X-linked lymphoproliferative disease type 1 (XLP1, Duncan disease) is a rare inborn error of immunity caused by hemizygous loss-of-function variants in SH2D1A, which encodes SAP (SLAM-associated protein). SAP is a small adaptor built almost entirely from a single SH2 domain that couples the cytoplasmic tails of SLAM-family receptors — SLAM (CD150), 2B4 (CD244), NTB-A (SLAMF6), CD84 and Ly9 — to activating kinases. Without SAP these receptors do not simply fall silent: they recruit SH2-domain-containing phosphatases instead and switch from activating to inhibitory signaling. The consequence is paradoxical, and it is specific to the B-lymphocyte compartment that Epstein-Barr virus (EBV) inhabits, because SLAM-family ligands such as CD48 are densely expressed on EBV-infected B cells. NK cells and EBV-specific CD8+ cytotoxic T cells engage those targets and are inhibited by the encounter, so the virus-driven B-cell expansion is never contained. SAP loss also abolishes invariant NKT (type I NKT) cell development and cripples cognate T-B help and germinal-center formation. The classical triad is fulminant infectious mononucleosis/hemophagocytic lymphohistiocytosis (HLH) on primary EBV exposure, dysgammaglobulinemia, and B-cell lymphoma (historically often ileocecal). Rarer manifestations include hepatitis progressing to liver failure, aplastic anemia, vasculitis, and lymphomatoid granulomatosis. Allogeneic hematopoietic stem cell transplant is the only curative therapy, and outcome depends sharply on whether it is done before or after an HLH episode.
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name: X-linked Lymphoproliferative Disease Due To SH2D1A Deficiency
creation_date: '2026-09-01T00:00:00Z'
category: Genetic
synonyms:
- XLP1
- XLP type 1
- Duncan disease
- Purtilo syndrome
- SAP deficiency
- X-linked lymphoproliferative syndrome type 1
description: >-
X-linked lymphoproliferative disease type 1 (XLP1, Duncan disease) is a rare
inborn error of immunity caused by hemizygous loss-of-function variants in
SH2D1A, which encodes SAP (SLAM-associated protein). SAP is a small adaptor
built almost entirely from a single SH2 domain that couples the cytoplasmic
tails of SLAM-family receptors — SLAM (CD150), 2B4 (CD244), NTB-A (SLAMF6),
CD84 and Ly9 — to activating kinases. Without SAP these receptors do not
simply fall silent: they recruit SH2-domain-containing phosphatases instead
and switch from activating to inhibitory signaling. The consequence is
paradoxical, and it is specific to the B-lymphocyte compartment that
Epstein-Barr virus (EBV) inhabits, because SLAM-family ligands such as CD48
are densely expressed on EBV-infected B cells. NK cells and EBV-specific CD8+
cytotoxic T cells engage those targets and are inhibited by the encounter,
so the virus-driven B-cell expansion is never contained. SAP loss also
abolishes invariant NKT (type I NKT) cell development and cripples cognate
T-B help and germinal-center formation.
The classical triad is fulminant infectious mononucleosis/hemophagocytic
lymphohistiocytosis (HLH) on primary EBV exposure, dysgammaglobulinemia, and
B-cell lymphoma (historically often ileocecal). Rarer manifestations include
hepatitis progressing to liver failure, aplastic anemia, vasculitis, and
lymphomatoid granulomatosis. Allogeneic hematopoietic stem cell transplant is
the only curative therapy, and outcome depends sharply on whether it is done
before or after an HLH episode.
notes: >-
Scope note: this entry is the dedicated XLP1 (SH2D1A/SAP) disease entry. The
Hemophagocytic_Lymphohistiocytosis entry covers HLH as a syndrome and carries
XLP1 and XLP2 as HLH-predisposing subtypes; it is the place to look for the
general HLH pathophysiology, diagnostic criteria and HLH-94/HLH-2004
treatment protocols. This entry covers the SAP-specific mechanism and the
non-HLH arms of XLP1 (dysgammaglobulinemia, lymphoma, absent iNKT cells) that
the HLH entry does not model. XLP2 (XIAP/BIRC4 deficiency, MONDO:0010385) is a
separate disease and is not covered here.
disease_term:
preferred_term: X-linked lymphoproliferative disease type 1 (SAP deficiency)
term:
id: MONDO:0024551
label: X-linked lymphoproliferative disease due to SH2D1A deficiency
parents:
- X-linked lymphoproliferative syndrome
- Primary immunodeficiency
- Inborn error of immunity
references:
- reference: PMID:20301580
title: X-Linked Lymphoproliferative Disease.
tags:
- GeneReviews
classifications:
harrisons_chapter:
- classification_value: IMMUNE_RHEUMATOLOGIC
notes: >-
XLP1 is an inborn error of immunity (primary immunodeficiency) presenting
as severe immune dysregulation, placing it in the immunology grouping.
evidence:
- reference: PMID:20926771
reference_title: "X-linked lymphoproliferative disease due to SAP/SH2D1A deficiency: a multicenter study on the manifestations, management and outcome of the disease."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
X-linked lymphoproliferative disease (XLP1) is a rare immunodeficiency
characterized by severe immune dysregulation and caused by mutations in
the SH2D1A/SAP gene.
explanation: >-
Characterizes XLP1 as an immunodeficiency with severe immune
dysregulation, supporting placement in the immunologic Part.
- classification_value: GENETICS_ENVIRONMENT_DISEASE
notes: >-
XLP1 is a monogenic X-linked disorder whose clinical expression is gated
by an environmental exposure (primary EBV infection), so it also belongs
in the genetics/gene-environment Part.
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The diagnosis of XLP1 or XLP2 can be established in a male proband who
has a hemizygous germline pathogenic variant in SH2D1A (XLP1) or XIAP
(XLP2) identified on molecular genetic testing.
explanation: >-
Establishes XLP1 as a single-gene germline disorder diagnosed by
molecular genetic testing.
iuis_category:
classification_value: immune dysregulation
notes: >-
IUIS 2022 (Tangye et al.) places SAP deficiency (XLP1) in Table 4,
Diseases of immune dysregulation, subsection 7 "Susceptibility to EBV and
Lymphoproliferative Conditions".
evidence:
- reference: PMID:35748970
reference_title: "Human Inborn Errors of Immunity: 2022 Update on the Classification from the International Union of Immunological Societies Expert Committee."
supports: SUPPORT
evidence_source: OTHER
snippet: "SAP deficiency (XLP1) SH2D1A XL 300490"
explanation: >-
The IUIS Table 4 (Diseases of immune dysregulation) row for SAP
deficiency (XLP1), giving the gene SH2D1A, X-linked inheritance and OMIM
300490.
- reference: PMID:35748970
reference_title: "Human Inborn Errors of Immunity: 2022 Update on the Classification from the International Union of Immunological Societies Expert Committee."
supports: SUPPORT
evidence_source: OTHER
snippet: "7. Susceptibility to EBV and Lymphoproliferative Conditions"
explanation: >-
Names the Table 4 subsection under which the SAP deficiency row is
listed, fixing the IUIS placement within immune dysregulation.
inheritance:
- name: X-linked recessive
inheritance_term:
preferred_term: X-linked recessive inheritance
term:
id: HP:0001419
label: X-linked recessive inheritance
description: >-
XLP1 is inherited in an X-linked manner. Affected males carry a hemizygous
germline SH2D1A pathogenic variant; heterozygous female carriers are
typically unaffected, though symptomatic carriers with skewed X-chromosome
inactivation have been reported.
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "XLP is inherited in an X-linked manner."
explanation: States the inheritance mode directly.
- reference: PMID:48119
reference_title: "X-linked recessive progressive combined variable immunodeficiency (Duncan's disease)."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Approximately half the boys, including the half-brothers, were affected,
and girls were spared, implying sex-linked recessive inheritance.
explanation: >-
The original Duncan kindred segregation analysis that established X-linked
recessive inheritance for the disorder.
pathophysiology:
- name: SAP Adaptor Deficiency
biological_scale: MOLECULAR
description: >-
Hemizygous SH2D1A deletions, frameshifts, nonsense and missense variants
abolish or destabilize SAP, a 128-amino-acid protein consisting almost
entirely of a single SH2 domain. Affected males typically have absent or
markedly reduced intracellular SAP protein by flow cytometry. This is the
initiating molecular lesion of XLP1.
genetic_context:
variant_origin: GERMLINE
zygosity: HEMIZYGOUS
functional_impact_category: LOSS_OF_FUNCTION
genes:
- preferred_term: SH2D1A
term:
id: hgnc:10820
label: SH2D1A
description: >-
Hemizygous germline SH2D1A variants in males, including large constitutional
deletions, small intragenic deletions, nonsense and missense alleles.
Missense alleles such as R55L may retain detectable protein while remaining
functionally deficient.
molecular_functions:
- preferred_term: SAP signaling adaptor activity
term:
id: GO:0035591
label: signaling adaptor activity
modifier: LOSS_OF_FUNCTION
evidence:
- reference: PMID:9771704
reference_title: Host response to EBV infection in X-linked lymphoproliferative disease results from mutations in an SH2-domain encoding gene.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We have identified a gene, SH2D1A, that is mutated in XLP patients and
encodes a novel protein composed of a single SH2 domain.
explanation: >-
Identifies SH2D1A as the mutated gene in XLP and its product as a
single-SH2-domain protein.
- reference: PMID:9811875
reference_title: Inactivating mutations in an SH2 domain-encoding gene in X-linked lymphoproliferative syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We describe here the presence of small deletions and intragenic mutations
that specifically disrupt a gene named DSHP in 6 of 10 unrelated patients
with XLP.
explanation: >-
Independent identification of inactivating deletions and intragenic
mutations in the same gene (named DSHP in this report) in XLP patients.
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
These males typically have low or absent SAP or XIAP protein expression,
respectively, by flow cytometry.
explanation: >-
Confirms that the genetic lesion translates into absent or reduced SAP
protein in affected males.
downstream:
- target: SLAM-Family Receptor Signaling Failure
description: >-
Loss of the SAP adaptor removes the obligate coupling between SLAM-family
receptor cytoplasmic tails and downstream activating signaling.
causal_link_type: DIRECT
- name: SLAM-Family Receptor Signaling Failure
biological_scale: MOLECULAR
description: >-
SAP binds immunoreceptor tyrosine-based switch motifs in the cytoplasmic
tails of SLAM (CD150), 2B4 (CD244), NTB-A (SLAMF6), CD84 and Ly9, and
normally recruits the kinase FynT while blocking docking of SH2-containing
phosphatases. Without SAP, SHP-1/SHP-2 occupy those docking sites, so the
receptors deliver inhibitory rather than activating signals. This inversion —
rather than a simple absence of signal — is the defining molecular feature
of XLP1 and explains why the immune failure is targeted at SLAM-ligand-bearing
B lymphocytes.
molecular_functions:
- preferred_term: SAP SH2-domain binding to SLAM-family receptor tails
term:
id: GO:0042169
label: SH2 domain binding
modifier: LOSS_OF_FUNCTION
evidence:
- reference: PMID:9774102
reference_title: The X-linked lymphoproliferative-disease gene product SAP regulates signals induced through the co-receptor SLAM.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
acts as an inhibitor by blocking recruitment of the SH2-domain-containing
signal-transduction molecule SHP-2 to a docking site in the SLAM
cytoplasmic region
explanation: >-
Defines SAP's molecular role as competitively excluding SHP-2 from the
SLAM cytoplasmic tail, the step lost in XLP1.
- reference: PMID:9774102
reference_title: The X-linked lymphoproliferative-disease gene product SAP regulates signals induced through the co-receptor SLAM.
supports: SUPPORT
evidence_source: IN_VITRO
directness: INDIRECT
snippet: >-
Absence of the inhibitor SAP in XLP patients affects T/B-cell interactions
induced by SLAM, leading to an inability to control B-cell proliferation
caused by Epstein-Barr virus infections.
explanation: >-
Connects loss of SAP-dependent SLAM signaling to failure of control over
EBV-driven B-cell proliferation. Graded IN_VITRO with INDIRECT
directness because this is the authors' closing interpretation of their
COS-cell and Jurkat transfection experiments, not a clinical observation
reported in the paper; it matches the grading of the other quote from
this same publication above.
- reference: PMID:21219180
reference_title: SLAM family receptors and SAP adaptors in immunity.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
SAP consists almost entirely of a single SH2 protein domain that interacts
with the cytoplasmic tail of SLAM and related receptors, including 2B4,
Ly108, CD84, Ly9, and potentially CRACC.
explanation: >-
Enumerates the SLAM-family receptors whose signaling depends on SAP,
defining the breadth of the lesion. Review article, hence OTHER.
downstream:
- target: 2B4/NTB-A Inhibitory Switch on NK Cells
description: >-
On NK cells, uncoupled 2B4 and NTB-A engage their ligands on EBV-infected
B cells and transmit inhibitory signals.
causal_link_type: DIRECT
- target: Defective EBV-Specific CD8+ T Cell Cytotoxicity
description: >-
On EBV-specific cytotoxic T cells, the same SLAM-family receptors block
recognition of SLAM-ligand-positive B-cell targets.
causal_link_type: DIRECT
- target: Absent Invariant NKT Cell Development
description: >-
SAP-dependent SLAM-family homotypic signaling during thymic selection is
required for iNKT lineage commitment.
causal_link_type: DIRECT
- target: Defective T-B Cell Help and Germinal Center Formation
description: >-
SAP-dependent SLAM-family signaling sustains stable cognate T-B conjugates
and follicular helper T-cell function.
causal_link_type: DIRECT
- name: 2B4/NTB-A Inhibitory Switch on NK Cells
biological_scale: CELLULAR
description: >-
In XLP1 NK cells, 2B4 (CD244) not only fails to transduce a triggering
signal but actively inhibits cytolysis, and the same inversion affects
NTB-A. Because CD48 — the 2B4 ligand — is densely expressed on EBV-infected
B cells, XLP1 NK cells engaging an EBV-positive target receive a dominant
inhibitory signal and fail to kill it. Antibody-mediated masking of 2B4 and
NTB-A restores lysis, demonstrating that inhibition rather than absent
activation is the operative defect. Other NK triggering receptors (CD16,
NKp46, NKp44, NKp30) are intrinsically normal but are overridden by 2B4
engagement.
cell_types:
- preferred_term: natural killer cell
term:
id: CL:0000623
label: natural killer cell
biological_processes:
- preferred_term: NK-cell killing of EBV-infected B cells
term:
id: GO:0042267
label: natural killer cell mediated cytotoxicity
modifier: DECREASED
evidence:
- reference: PMID:10934222
reference_title: X-linked lymphoproliferative disease. 2B4 molecules displaying inhibitory rather than activating function are responsible for the inability of natural killer cells to kill Epstein-Barr virus-infected cells.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
We show that, in these patients, 2B4 not only fails to transduce
triggering signals, but also mediates a sharp inhibition of the NK-mediated
cytolysis.
explanation: >-
Direct demonstration that 2B4 signaling is inverted, not merely lost, in
XLP1 NK cells.
- reference: PMID:10934222
reference_title: X-linked lymphoproliferative disease. 2B4 molecules displaying inhibitory rather than activating function are responsible for the inability of natural killer cells to kill Epstein-Barr virus-infected cells.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Remarkably, NK cells from XLP patients could not kill EBV(+) B cell lines."
explanation: >-
Establishes the functional consequence: failure of XLP1 NK cells to kill
EBV-infected B cells.
- reference: PMID:11489943
reference_title: "NTB-A [correction of GNTB-A], a novel SH2D1A-associated surface molecule contributing to the inability of natural killer cells to kill Epstein-Barr virus-infected B cells in X-linked lymphoproliferative disease."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Thus, in XLP-NK cells, NTB-A mediates inhibitory rather than activating signals."
explanation: >-
Shows the inhibitory switch is not confined to 2B4 but extends to a second
SAP-dependent SLAM-family receptor.
- reference: PMID:24985396
reference_title: Diagnosing XLP1 in patients with hemophagocytic lymphohistiocytosis.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
NK cells from all patients showed inhibitory 2B4 function and defective
killing of B-EBV cells.
explanation: >-
Confirms the inhibitory 2B4 phenotype in every patient of a genetically
confirmed XLP1 cohort, establishing it as a consistent disease feature.
downstream:
- target: Uncontrolled EBV-Driven B Cell Proliferation
description: >-
Failure of NK-mediated killing leaves the EBV-infected B-cell pool
unchecked during primary infection.
causal_link_type: DIRECT
- target: Decreased Natural Killer Cell-Induced Killing of Target Cells
causal_link_type: DIRECT
description: >-
The inhibitory switch is measured directly as impaired NK killing of
EBV-infected B-cell targets — the laboratory readout of this node.
- name: Defective EBV-Specific CD8+ T Cell Cytotoxicity
biological_scale: CELLULAR
description: >-
XLP1 patients who survive primary EBV infection mount numerically normal
EBV-specific CD8+ T-cell responses, but those T cells are selectively unable
to recognize SLAM-ligand-positive targets. CD8+ clones kill EBV-antigen-expressing
targets that lack SLAM ligands, yet fail against EBV-transformed lymphoblastoid
cell lines; blocking CD244 and NTB-A restores recognition. This selectivity
is the best available explanation for why XLP1 confers susceptibility to EBV
specifically rather than to viruses in general — EBV's tropism is for the
very B lymphocytes that carry the inhibitory ligands.
cell_types:
- preferred_term: EBV-specific CD8+ cytotoxic T cell
term:
id: CL:0000625
label: CD8-positive, alpha-beta T cell
biological_processes:
- preferred_term: CD8+ T-cell killing of EBV-transformed B cells
term:
id: GO:0001913
label: T cell mediated cytotoxicity
modifier: DECREASED
evidence:
- reference: PMID:20644117
reference_title: Impaired Epstein-Barr virus-specific CD8+ T-cell function in X-linked lymphoproliferative disease is restricted to SLAM family-positive B-cell targets.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
However, further investigation of in vitro-derived CD8(+) T-cell clones
established from 2 of these donors showed they efficiently recognized SLAM
ligand-negative target cells expressing EBV antigens, but showed impaired
recognition of EBV-transformed, SLAM ligand-positive, lymphoblastoid cell
lines (LCLs).
explanation: >-
Demonstrates that the CD8+ T-cell defect in XLP1 is target-restricted to
SLAM-ligand-positive B cells.
- reference: PMID:20644117
reference_title: Impaired Epstein-Barr virus-specific CD8+ T-cell function in X-linked lymphoproliferative disease is restricted to SLAM family-positive B-cell targets.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Importantly, LCL recognition was restored when interactions between the
SLAM receptors CD244 and natural killer-, T-, and B-cell antigen (NTBA) and
their ligands on LCLs were blocked.
explanation: >-
Rescue by receptor blockade identifies inhibitory SLAM-family signaling as
the operative cause of the CD8+ recognition failure.
downstream:
- target: Uncontrolled EBV-Driven B Cell Proliferation
description: >-
Loss of cytotoxic T-cell control over EBV-transformed B cells permits their
continued expansion.
causal_link_type: DIRECT
- name: Absent Invariant NKT Cell Development
biological_scale: CELLULAR
description: >-
SAP is required for the development of invariant (type I) NKT cells. Sh2d1a-null
mice lack NKT cells in thymus and periphery through a hematopoietic-cell-autonomous
defect that is rescued by restoring SAP expression in bone marrow, and seventeen
genetically confirmed XLP1 patients likewise lacked NKT cells. Absent iNKT cells
are a robust, near-universal cellular biomarker of SAP deficiency and are thought
to contribute to defective antiviral and antitumor immunity and to
hypogammaglobulinemia.
cell_types:
- preferred_term: invariant (type I) NKT cell
term:
id: CL:0000921
label: type I NK T cell
biological_processes:
- preferred_term: invariant NKT cell development
term:
id: GO:0001865
label: NK T cell differentiation
modifier: DECREASED
evidence:
- reference: PMID:15711562
reference_title: "Regulation of NKT cell development by SAP, the protein defective in XLP."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Seventeen individuals with X-linked lymphoproliferative disease (XLP), who
harbored germline mutations in SH2D1A, also lacked NKT cells.
explanation: >-
Establishes absent NKT cells in genetically confirmed human XLP1 patients.
- reference: PMID:15711562
reference_title: "Regulation of NKT cell development by SAP, the protein defective in XLP."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
The defect in NKT cell ontogeny was hematopoietic cell autonomous and could
be rescued by reconstitution of SAP expression within Sh2d1a-/- bone marrow
cells.
explanation: >-
Mouse genetics establishes that the NKT developmental block is caused by
SAP loss within the hematopoietic compartment and is SAP-reversible.
downstream:
- target: Impaired Immune Surveillance and B Cell Lymphomagenesis
description: >-
Loss of the iNKT compartment removes an antitumor effector arm, contributing
to defective surveillance of transformed B cells.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
- target: Failed Class Switching and Antibody Production
description: >-
Absent iNKT cells are proposed to contribute to the humoral defect of SAP
deficiency alongside the primary T-B help failure.
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
- name: Uncontrolled EBV-Driven B Cell Proliferation
biological_scale: CELLULAR
description: >-
With both NK- and CD8-mediated control of SLAM-ligand-positive targets lost,
primary EBV infection produces an uncontained expansion of virus-carrying B
cells accompanied by a massive reactive cytotoxic T-cell response. This is
the pivotal cellular event of XLP1 and the branch point from which both the
acute hyperinflammatory arm and the chronic lymphomagenesis arm descend.
cell_types:
- preferred_term: EBV-infected B cell
term:
id: CL:0000236
label: B cell
biological_processes:
- preferred_term: EBV-driven B cell proliferation
term:
id: GO:0030890
label: positive regulation of B cell proliferation
modifier: INCREASED
evidence:
- reference: PMID:9811875
reference_title: Inactivating mutations in an SH2 domain-encoding gene in X-linked lymphoproliferative syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In affected males, primary EBV infection leads to the uncontrolled
proliferation of virus-containing B cells and reactive cytotoxic T cells,
often culminating in the development of high-grade lymphoma.
explanation: >-
States the central pathophysiologic event and its two downstream
consequences.
- reference: PMID:9811875
reference_title: Inactivating mutations in an SH2 domain-encoding gene in X-linked lymphoproliferative syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
its inactivation in XLP patients results in a selective immunodeficiency to
EBV
explanation: >-
Emphasizes the EBV-selectivity of the immunodeficiency produced by loss of
this gene.
downstream:
- target: Unterminated Hyperinflammatory Response to Primary EBV Infection
description: >-
Persistent antigen load from uncleared EBV-infected B cells drives
unterminated lymphocyte and macrophage activation.
causal_link_type: DIRECT
- target: Impaired Immune Surveillance and B Cell Lymphomagenesis
description: >-
Sustained polyclonal B-cell proliferation provides the substrate on which
monoclonal malignant transformation occurs.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
- name: Unterminated Hyperinflammatory Response to Primary EBV Infection
biological_scale: ORGANISM
description: >-
The acute arm of XLP1. Because the activating stimulus is never cleared,
lymphocyte and macrophage activation continues without a termination signal,
producing a hyperinflammatory cytokine state clinically indistinguishable
from HLH: prolonged high fever, bi- or trilineage cytopenias,
hepatosplenomegaly and hemophagocytosis, with death typically from liver
failure or multiorgan dysfunction. This is the most severe feature of XLP1
and the principal determinant of outcome. The general HLH pathophysiology is
modeled in the Hemophagocytic_Lymphohistiocytosis entry.
cell_types:
- preferred_term: lymphocyte
term:
id: CL:0000542
label: lymphocyte
biological_processes:
- preferred_term: hyperinflammatory cytokine production
term:
id: GO:0002367
label: cytokine production involved in immune response
modifier: INCREASED
- preferred_term: systemic inflammatory response
term:
id: GO:0006954
label: inflammatory response
modifier: INCREASED
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HLH is characterized as an acute illness with prolonged and high fever,
bi- or trilineage cytopenias, and hepatosplenomegaly, which is often severe
or fatal.
explanation: Describes the clinical syndrome produced at this node.
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Death is generally secondary to liver failure or multisystem organ
dysfunction.
explanation: >-
Identifies the organ-level mechanism of death in the acute arm.
- reference: PMID:3030174
reference_title: Epstein-Barr virus infections in males with the X-linked lymphoproliferative syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We hypothesized that the defective lymphoproliferative control locus on the
X chromosome results in unregulated cytotoxic lymphocytic responses to the
Epstein-Barr virus; hence, severe hepatitis and virus-associated
hemophagocytic syndrome occur with the infectious mononucleosis phenotype.
explanation: >-
The registry-era formulation of this node: unregulated cytotoxic
lymphocytic response producing hepatitis and hemophagocytic syndrome.
- reference: PMID:20926771
reference_title: "X-linked lymphoproliferative disease due to SAP/SH2D1A deficiency: a multicenter study on the manifestations, management and outcome of the disease."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The advent of better treatment strategies for HLH and malignancy has
greatly reduced mortality for these patients, but HLH still remains the
most severe feature of XLP1.
explanation: >-
Establishes HLH as the dominant severity determinant in a modern
91-patient XLP1 cohort.
downstream:
- target: Fulminant Infectious Mononucleosis with Hemophagocytic Lymphohistiocytosis
causal_link_type: DIRECT
description: >-
The unterminated hyperinflammatory state is what presents clinically as
fulminant infectious mononucleosis and/or HLH.
- target: Hemophagocytosis
causal_link_type: DIRECT
description: >-
Activated macrophages engulf haematopoietic cells, the marrow finding that
gives the syndrome its name.
- target: Prolonged high fever
causal_link_type: DIRECT
description: >-
Sustained hypercytokinaemia from the unterminated response drives the
prolonged high fever that opens the HLH episode.
- target: Bi- or trilineage cytopenias
causal_link_type: DIRECT
description: >-
Marrow suppression by the same cytokine excess, compounded by
hemophagocytosis of haematopoietic precursors, depresses two or three
peripheral lineages during the episode.
- target: Hepatitis
causal_link_type: DIRECT
description: >-
Lymphocytic infiltration of the liver during the hyperinflammatory
response produces hepatitis.
- target: Hepatosplenomegaly
causal_link_type: DIRECT
description: >-
Organ infiltration by activated lymphocytes and macrophages enlarges liver
and spleen.
- target: Lymphadenopathy
causal_link_type: DIRECT
description: >-
The same uncontrolled lymphoproliferation enlarges lymph nodes.
- target: Aplastic Anemia
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: >-
Marrow failure is a recognized outcome of the acute arm; whether it
reflects haemophagocytic consumption, cytokine suppression of
haematopoiesis, or a distinct process is not resolved in these cohorts.
- target: Vasculitis
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: >-
Vasculitis is reported among the XLP1 manifestations; the path from the
hyperinflammatory state to vessel injury is not established.
- name: Defective T-B Cell Help and Germinal Center Formation
biological_scale: CELLULAR
description: >-
SAP-dependent SLAM-family signaling sustains stable cognate interactions
between follicular helper T cells and antigen-engaged B cells, and is
required for germinal-center development. XLP1 patients have normal B-cell
development but markedly reduced memory B cells, and the few present are
IgM-positive, indicating failed in vivo isotype switching. The block is
B-cell extrinsic: XLP1 B cells proliferate and differentiate normally in
vitro, while XLP1 CD4+ T cells fail to differentiate into IL-10-producing
effectors, fail to upregulate ICOS, and provide poor B-cell help — a defect
partially corrected by exogenous IL-10 or restored SAP expression.
cell_types:
- preferred_term: T follicular helper cell
term:
id: CL:0002038
label: T follicular helper cell
- preferred_term: memory B cell
term:
id: CL:0000787
label: memory B cell
biological_processes:
- preferred_term: germinal center formation
term:
id: GO:0002467
label: germinal center formation
modifier: DECREASED
evidence:
- reference: PMID:15761493
reference_title: Impaired humoral immunity in X-linked lymphoproliferative disease is associated with defective IL-10 production by CD4+ T cells.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Our analysis of 14 XLP patients revealed normal B cell development but a
marked reduction in the number of memory B cells.
explanation: >-
Localizes the humoral lesion downstream of B-cell development, at memory
B-cell generation.
- reference: PMID:15761493
reference_title: Impaired humoral immunity in X-linked lymphoproliferative disease is associated with defective IL-10 production by CD4+ T cells.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The few memory cells detected were IgM(+), revealing deficient isotype
switching in vivo.
explanation: >-
Demonstrates failed in vivo class switching, the hallmark of a defective
germinal-center reaction.
- reference: PMID:15761493
reference_title: Impaired humoral immunity in X-linked lymphoproliferative disease is associated with defective IL-10 production by CD4+ T cells.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
XLP CD4(+) T cells did not efficiently differentiate into IL-10(+) effector
cells or provide optimal B cell help in vitro
explanation: >-
Identifies the T-cell-intrinsic help defect that makes the B-cell block
extrinsic.
- reference: PMID:22500829
reference_title: "From SAP-less T cells to helpless B cells and back: dynamic T-B cell interactions underlie germinal center development and function."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Signaling lymphocytic activation molecule (SLAM)-associated protein (SAP)
has recently been defined as a pivotal molecule that controls cognate T-B
interactions and GC formation.
explanation: >-
Review establishing SAP as the controller of cognate T-B interaction and
germinal-center formation. Review article, hence OTHER.
downstream:
- target: Failed Class Switching and Antibody Production
description: >-
Failure of germinal-center output and class switching produces the
abnormal serum immunoglobulin profile.
causal_link_type: DIRECT
- name: Failed Class Switching and Antibody Production
biological_scale: ORGANISM
description: >-
The humoral endpoint of XLP1. Serum immunoglobulins are abnormal, most often
as hypogammaglobulinemia but historically spanning agammaglobulinemia to
polyclonal hypergammaglobulinemia — hence "dysgammaglobulinemia" rather than
a purely quantitative deficit. Untreated, it causes recurrent respiratory
infection and bronchiectasis and can itself be fatal. It may be the presenting
feature in a boy with no EBV history, and can be indistinguishable from common
variable immunodeficiency.
biological_processes:
- preferred_term: immunoglobulin class switch recombination
term:
id: GO:0045190
label: isotype switching
modifier: DECREASED
- preferred_term: immunoglobulin production
term:
id: GO:0002377
label: immunoglobulin production
modifier: DYSREGULATED
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In those with XLP1, dys- or hypogammaglobulinemia can lead to varying
degrees of humoral immune dysfunction associated with bronchiectasis and
recurrent respiratory infections that, if untreated, may result in death.
explanation: >-
Establishes dysgammaglobulinemia and its clinical consequences as an XLP1
manifestation.
- reference: PMID:48119
reference_title: "X-linked recessive progressive combined variable immunodeficiency (Duncan's disease)."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Fever, pharyngitis, lymphadenomegaly, hepatosplenomegaly, atypical
lymphocytosis, and a spectrum ranging from agammaglobulinaemia to
polyclonal hyper-gammaglobulinaemia occurred.
explanation: >-
The original description of the bidirectional immunoglobulin abnormality
that the term dysgammaglobulinemia captures.
downstream:
- target: Dysgammaglobulinemia
causal_link_type: DIRECT
description: >-
The failure of class switching and antibody output is measured as the
abnormal serum immunoglobulin profile.
- target: Decreased Circulating Immunoglobulin Concentration
causal_link_type: DIRECT
description: >-
Hypogammaglobulinemia is the commonest direction the abnormality takes.
- target: Recurrent Respiratory Infections and Bronchiectasis
causal_link_type: DIRECT
description: >-
Untreated antibody deficiency produces recurrent sinopulmonary infection
and, over time, bronchiectasis.
- name: Impaired Immune Surveillance and B Cell Lymphomagenesis
biological_scale: TISSUE
description: >-
The chronic arm of XLP1. Sustained polyclonal B-cell proliferation, combined
with loss of NK-, CD8- and iNKT-mediated surveillance of transformed cells,
provides both the substrate and the permissive environment for conversion to
monoclonal B-cell malignancy. Lymphoma is essentially confined to XLP1 among
the X-linked lymphoproliferative syndromes and typically arises in childhood,
usually after EBV exposure; extranodal ileocecal/ileal B-cell lymphoma is the
classically described site, and the original Duncan kindred included
lymphomas of the ileum.
cell_types:
- preferred_term: transformed B cell
term:
id: CL:0000236
label: B cell
biological_processes:
- preferred_term: immune surveillance of transformed B cells
term:
id: GO:0002418
label: immune response to tumor cell
modifier: DECREASED
evidence:
- reference: PMID:3030174
reference_title: Epstein-Barr virus infections in males with the X-linked lymphoproliferative syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
A sustained polyclonal B-cell proliferation probably converts to a
monoclonal B-cell malignancy as a result of molecular alterations.
explanation: >-
States the polyclonal-to-monoclonal transition that this node models.
- reference: PMID:21119115
reference_title: Clinical similarities and differences of patients with X-linked lymphoproliferative syndrome type 1 (XLP-1/SAP deficiency) versus type 2 (XLP-2/XIAP deficiency).
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Although only XLP-1 patients developed lymphomas (30%), XLP-2 patients
(17%) had chronic hemorrhagic colitis as documented by histopathology.
explanation: >-
Direct comparison establishing that lymphomagenesis is specific to the
SAP-deficient (XLP1) form, which supports it being a SAP-dependent
surveillance failure rather than a generic XLP feature.
- reference: PMID:48119
reference_title: "X-linked recessive progressive combined variable immunodeficiency (Duncan's disease)."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In addition, 2 half-brothers had lymphomas of the ileum and central nervous
system.
explanation: >-
The original kindred documenting the characteristic extranodal ileal site
of XLP lymphoma.
downstream:
- target: B-Cell Lymphoma
causal_link_type: DIRECT
description: >-
Failed surveillance of proliferating B cells permits frank lymphoma,
characteristically extranodal and often ileocecal.
phenotypes:
- category: Immunologic
name: Fulminant Infectious Mononucleosis with Hemophagocytic Lymphohistiocytosis
description: >-
The defining acute presentation: an overwhelming response to primary EBV
infection producing severe or fatal mononucleosis and/or HLH with prolonged
high fever, cytopenias, hepatosplenomegaly and hemophagocytosis. It is the
most common presentation of XLP and the leading cause of death. In the
modern Pachlopnik Schmid cohort HLH occurred in 55% of XLP-1 patients and
was EBV-triggered in 92%; in the historical Purtilo registry 57% of affected
males died of infectious mononucleosis.
frequency: FREQUENT
phenotype_term:
preferred_term: Severe Epstein-Barr virus infection
term:
id: HP:0031693
label: Severe Epstein Barr virus infection
temporality: ACUTE
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HLH / fulminant infectious mononucleosis is the most common presentation
regardless of subtype.
explanation: >-
Establishes fulminant infectious mononucleosis / HLH as the most common
presentation.
- reference: PMID:21119115
reference_title: Clinical similarities and differences of patients with X-linked lymphoproliferative syndrome type 1 (XLP-1/SAP deficiency) versus type 2 (XLP-2/XIAP deficiency).
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HLH (XLP-1, 55%; XLP-2, 76%) and hypogammaglobulinemia (XLP-1, 67%; XLP-2,
33%) occurred in both groups.
explanation: >-
Quantifies HLH frequency at 55% in a 33-patient XLP-1 cohort, supporting
the FREQUENT band.
- reference: PMID:21119115
reference_title: Clinical similarities and differences of patients with X-linked lymphoproliferative syndrome type 1 (XLP-1/SAP deficiency) versus type 2 (XLP-2/XIAP deficiency).
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Epstein-Barr virus infection in XLP-1 and XLP-2 was the common trigger of
HLH (XLP-1, 92%; XLP-2, 83%).
explanation: >-
Quantifies EBV as the trigger in 92% of XLP-1 HLH episodes.
- reference: PMID:21119115
reference_title: Clinical similarities and differences of patients with X-linked lymphoproliferative syndrome type 1 (XLP-1/SAP deficiency) versus type 2 (XLP-2/XIAP deficiency).
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Survival rates and mean ages at the first HLH episode did not differ for
both groups, but HLH was more severe with lethal outcome in XLP-1 (XLP-1,
61%; XLP-2, 23%).
explanation: >-
Documents the high lethality of HLH specifically in the SAP-deficient form.
- category: Hematologic
name: Hemophagocytosis
description: >-
Histologic hemophagocytosis in bone marrow, liver, spleen or lymph node is
the pathologic correlate of the HLH episode in XLP1.
phenotype_term:
preferred_term: Hemophagocytosis
term:
id: HP:0012156
label: Hemophagocytosis
evidence:
- reference: PMID:3030174
reference_title: Epstein-Barr virus infections in males with the X-linked lymphoproliferative syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
hence, severe hepatitis and virus-associated hemophagocytic syndrome occur
with the infectious mononucleosis phenotype
explanation: >-
Documents hemophagocytic syndrome as part of the XLP infectious
mononucleosis phenotype.
- category: Clinical
name: Prolonged high fever
description: >-
Prolonged, high fever is one of the three cardinal features of the HLH
episode, alongside cytopenias and hepatosplenomegaly. It is curated as its
own phenotype rather than left inside the HLH narrative because it is the
presenting sign that brings these patients to attention, and because the
sibling XLP2 entry binds it from the same GeneReviews sentence.
frequency: FREQUENT
phenotype_term:
preferred_term: Prolonged high fever
term:
id: HP:0001945
label: Fever
temporality: PROLONGED
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HLH is characterized as an acute illness with prolonged and high fever,
bi- or trilineage cytopenias, and hepatosplenomegaly, which is often
severe or fatal.
explanation: >-
GeneReviews names prolonged high fever as a defining feature of the HLH
episode, which the same source reports as the most common presentation of
XLP regardless of subtype.
- reference: PMID:21119115
reference_title: Clinical similarities and differences of patients with X-linked lymphoproliferative syndrome type 1 (XLP-1/SAP deficiency) versus type 2 (XLP-2/XIAP deficiency).
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HLH (XLP-1, 55%; XLP-2, 76%) and hypogammaglobulinemia (XLP-1, 67%; XLP-2,
33%) occurred in both groups.
explanation: >-
The FREQUENT band is inherited from the 55% HLH rate in XLP-1, since
GeneReviews defines the episode as including this feature.
- category: Laboratory
name: Bi- or trilineage cytopenias
description: >-
Anemia, thrombocytopenia and/or neutropenia accompanying the acute
hyperinflammatory episode. Distinct from the separately curated Aplastic
Anemia phenotype, which is a marrow-failure entity rather than the transient
cytopenia of an HLH episode.
frequency: FREQUENT
phenotype_term:
preferred_term: Bi- or trilineage cytopenias
term:
id: HP:0001876
label: Pancytopenia
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HLH is characterized as an acute illness with prolonged and high fever,
bi- or trilineage cytopenias, and hepatosplenomegaly, which is often
severe or fatal.
explanation: >-
GeneReviews names bi- or trilineage cytopenias as a defining feature of
the HLH episode.
- reference: PMID:21119115
reference_title: Clinical similarities and differences of patients with X-linked lymphoproliferative syndrome type 1 (XLP-1/SAP deficiency) versus type 2 (XLP-2/XIAP deficiency).
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HLH (XLP-1, 55%; XLP-2, 76%) and hypogammaglobulinemia (XLP-1, 67%; XLP-2,
33%) occurred in both groups.
explanation: >-
The FREQUENT band is inherited from the 55% HLH rate in XLP-1, since
GeneReviews defines the episode as including this feature.
- category: Immunologic
name: Dysgammaglobulinemia
description: >-
Abnormal serum immunoglobulin concentrations, most commonly
hypogammaglobulinemia. Reported in 67% of XLP-1 patients in the Pachlopnik
Schmid cohort and in 29% of the historical Purtilo registry as acquired
hypogammaglobulinemia. May be the presenting feature and mimics common
variable immunodeficiency.
frequency: FREQUENT
phenotype_term:
preferred_term: Dysgammaglobulinemia
term:
id: HP:0010701
label: Abnormal circulating immunoglobulin concentration
evidence:
- reference: PMID:21119115
reference_title: Clinical similarities and differences of patients with X-linked lymphoproliferative syndrome type 1 (XLP-1/SAP deficiency) versus type 2 (XLP-2/XIAP deficiency).
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HLH (XLP-1, 55%; XLP-2, 76%) and hypogammaglobulinemia (XLP-1, 67%; XLP-2,
33%) occurred in both groups.
explanation: >-
Quantifies hypogammaglobulinemia at 67% in XLP-1, supporting the FREQUENT
band.
- reference: PMID:20926771
reference_title: "X-linked lymphoproliferative disease due to SAP/SH2D1A deficiency: a multicenter study on the manifestations, management and outcome of the disease."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Clinical manifestations are varied and include hemophagocytic
lymphohistiocytosis (HLH), lymphoma and dysgammaglobulinemia, often
triggered by Epstein-Barr virus infection.
explanation: >-
Lists dysgammaglobulinemia among the core manifestations in the 91-patient
XLP1 cohort.
- category: Immunologic
name: Decreased Circulating Immunoglobulin Concentration
description: >-
Hypogammaglobulinemia specifically, the most common direction of the
dysgammaglobulinemia, and the manifestation that drives immunoglobulin
replacement therapy.
phenotype_term:
preferred_term: Hypogammaglobulinemia
term:
id: HP:0004313
label: Decreased circulating immunoglobulin concentration
evidence:
- reference: PMID:3030174
reference_title: Epstein-Barr virus infections in males with the X-linked lymphoproliferative syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Fifty-seven percent of the males died of infectious mononucleosis, 29%
developed acquired hypogammaglobulinemia, and 24% had malignant lymphoma.
explanation: >-
Registry data quantifying acquired hypogammaglobulinemia in 29% of affected
males.
- category: Oncologic
name: B-Cell Lymphoma
description: >-
Malignant lymphoma, characteristically B-lineage and often extranodal with a
predilection for the ileocecal region. Occurred in 30% of XLP-1 patients in
the Pachlopnik Schmid cohort and 24% of the Purtilo registry, and is specific
to XLP1 among the XLP subtypes. Usually develops in childhood following EBV
exposure.
frequency: FREQUENT
phenotype_term:
preferred_term: B-cell lymphoma
term:
id: HP:0012191
label: B-cell lymphoma
evidence:
- reference: PMID:21119115
reference_title: Clinical similarities and differences of patients with X-linked lymphoproliferative syndrome type 1 (XLP-1/SAP deficiency) versus type 2 (XLP-2/XIAP deficiency).
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Although only XLP-1 patients developed lymphomas (30%), XLP-2 patients
(17%) had chronic hemorrhagic colitis as documented by histopathology.
explanation: >-
Quantifies lymphoma at 30% in XLP-1 and establishes its specificity to the
SAP-deficient subtype.
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Lymphoproliferative disease (malignant lymphoma) and other
lymphoproliferative diseases are specific to XLP1 and often develop in
childhood, usually following EBV exposure.
explanation: >-
Establishes XLP1-specificity, childhood onset and the EBV relationship of
the lymphoma.
- reference: PMID:48119
reference_title: "X-linked recessive progressive combined variable immunodeficiency (Duncan's disease)."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In addition, 2 half-brothers had lymphomas of the ileum and central nervous
system.
explanation: >-
Original documentation of the characteristic ileal (ileocecal) lymphoma
site in the Duncan kindred.
- category: Hepatic
name: Hepatitis
description: >-
Severe hepatitis accompanies the fulminant infectious mononucleosis
phenotype and reflects lymphocytic infiltration and hemophagocytosis in the
liver.
phenotype_term:
preferred_term: Hepatitis
term:
id: HP:0012115
label: Hepatitis
severity: SEVERE
evidence:
- reference: PMID:3030174
reference_title: Epstein-Barr virus infections in males with the X-linked lymphoproliferative syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
hence, severe hepatitis and virus-associated hemophagocytic syndrome occur
with the infectious mononucleosis phenotype
explanation: >-
Documents severe hepatitis as a component of the XLP infectious
mononucleosis phenotype.
sequelae:
- target: Hepatic Failure
causal_link_type: DIRECT
description: >-
Progressive hepatic necrosis during fulminant disease culminates in liver
failure, the usual proximate cause of death.
- category: Hepatic
name: Hepatic Failure
description: >-
Liver failure is the usual proximate cause of death in fulminant XLP1
disease, alongside multisystem organ dysfunction.
phenotype_term:
preferred_term: Hepatic failure
term:
id: HP:0001399
label: Hepatic failure
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Death is generally secondary to liver failure or multisystem organ
dysfunction.
explanation: >-
Identifies liver failure as the leading terminal event.
- category: Hematologic
name: Aplastic Anemia
description: >-
A rarer manifestation of XLP1, reflecting marrow failure in the setting of
severe immune dysregulation.
frequency: OCCASIONAL
phenotype_term:
preferred_term: Aplastic anemia
term:
id: HP:0001915
label: Aplastic anemia
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Rarer findings in those with XLP1 can include aplastic anemia, vasculitis,
and lymphoid granulomatosis.
explanation: >-
GeneReviews lists aplastic anemia among the rarer XLP1 findings; the
"rarer" wording maps to the OCCASIONAL band.
- category: Vascular
name: Vasculitis
description: >-
Vasculitis, including lymphomatoid granulomatosis, is an uncommon
manifestation of XLP1 reflecting the underlying lymphoproliferative and
immune-dysregulatory process.
frequency: OCCASIONAL
phenotype_term:
preferred_term: Vasculitis
term:
id: HP:0002633
label: Vasculitis
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Rarer findings in those with XLP1 can include aplastic anemia, vasculitis,
and lymphoid granulomatosis.
explanation: >-
GeneReviews lists vasculitis among the rarer XLP1 findings.
- category: Respiratory
name: Recurrent Respiratory Infections and Bronchiectasis
description: >-
Untreated dysgammaglobulinemia produces recurrent respiratory infection and
bronchiectasis, which can itself be fatal. This is the manifestation that
immunoglobulin replacement is intended to prevent.
phenotype_term:
preferred_term: Bronchiectasis
term:
id: HP:0002110
label: Bronchiectasis
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In those with XLP1, dys- or hypogammaglobulinemia can lead to varying
degrees of humoral immune dysfunction associated with bronchiectasis and
recurrent respiratory infections that, if untreated, may result in death.
explanation: >-
Directly links the humoral defect to bronchiectasis and recurrent
respiratory infection.
- category: Immunologic
name: Decreased Natural Killer Cell-Induced Killing of Target Cells
description: >-
A cellular phenotype and diagnostic assay readout: XLP1 NK cells show
inhibitory 2B4 function and fail to kill EBV-transformed B-cell targets. The
combination of SAP expression by flow cytometry and a 2B4 functional assay
identifies XLP1 patients whom SAP staining alone would miss.
phenotype_term:
preferred_term: Decreased natural killer cell-induced killing of target cells
term:
id: HP:0025808
label: Decreased natural killer cell-induced killing of target cells
evidence:
- reference: PMID:24985396
reference_title: Diagnosing XLP1 in patients with hemophagocytic lymphohistiocytosis.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
NK cells from all patients showed inhibitory 2B4 function and defective
killing of B-EBV cells.
explanation: >-
Documents defective NK killing of EBV-transformed targets in every patient
of a genetically confirmed XLP1 cohort.
- reference: PMID:24985396
reference_title: Diagnosing XLP1 in patients with hemophagocytic lymphohistiocytosis.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Study of SAP expression is specific but may have insufficient sensitivity
for screening XLP1 as a single tool. Combination with 2B4 functional assay
allows identification of all cases.
explanation: >-
Establishes the diagnostic value of the NK functional readout alongside SAP
protein staining.
- category: Lymphatic
name: Lymphadenopathy
description: >-
Lymphadenomegaly accompanies both the acute mononucleosis-like illness and
the lymphoproliferative manifestations of XLP1.
phenotype_term:
preferred_term: Lymphadenopathy
term:
id: HP:0002716
label: Lymphadenopathy
evidence:
- reference: PMID:48119
reference_title: "X-linked recessive progressive combined variable immunodeficiency (Duncan's disease)."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Fever, pharyngitis, lymphadenomegaly, hepatosplenomegaly, atypical
lymphocytosis, and a spectrum ranging from agammaglobulinaemia to
polyclonal hyper-gammaglobulinaemia occurred.
explanation: >-
Original clinical description documenting lymphadenomegaly in affected
males.
- category: Gastrointestinal
name: Hepatosplenomegaly
description: >-
Hepatosplenomegaly is a core feature of the HLH episode and was present in
the original Duncan kindred description.
phenotype_term:
preferred_term: Hepatosplenomegaly
term:
id: HP:0001433
label: Hepatosplenomegaly
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HLH is characterized as an acute illness with prolonged and high fever,
bi- or trilineage cytopenias, and hepatosplenomegaly, which is often severe
or fatal.
explanation: >-
Lists hepatosplenomegaly as a defining component of the HLH presentation.
genetic:
- name: SH2D1A
gene_term:
preferred_term: SH2D1A
term:
id: hgnc:10820
label: SH2D1A
association: CAUSATIVE
relationship_type: CAUSATIVE
inheritance:
- name: X-linked recessive
inheritance_term:
preferred_term: X-linked recessive inheritance
term:
id: HP:0001419
label: X-linked recessive inheritance
notes: >-
XLP1 is caused by hemizygous germline loss-of-function variants in SH2D1A
(Xq25), encoding SAP. Reported alleles include large constitutional genomic
deletions, small intragenic deletions, frameshift, nonsense, splice-site and
missense changes. Most abolish SAP protein expression; a minority (e.g.
R55L) retain detectable protein but are functionally deficient.
evidence:
- reference: PMID:9771704
reference_title: Host response to EBV infection in X-linked lymphoproliferative disease results from mutations in an SH2-domain encoding gene.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We have identified a gene, SH2D1A, that is mutated in XLP patients and
encodes a novel protein composed of a single SH2 domain.
explanation: Establishes SH2D1A as the XLP1 disease gene.
- reference: PMID:9774102
reference_title: The X-linked lymphoproliferative-disease gene product SAP regulates signals induced through the co-receptor SLAM.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The gene encoding SAP maps to the same area of the X chromosome as the
locus for X-linked lymphoproliferative disease (XLP) and we found mutations
in the SAP gene in three XLP patients.
explanation: >-
Independent identification of SAP gene mutations in XLP patients, with
positional concordance at the XLP locus.
- reference: PMID:24985396
reference_title: Diagnosing XLP1 in patients with hemophagocytic lymphohistiocytosis.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Nine cases were SAP(-), 2 expressed SAP with mean relative fluorescence
intensity values below the range of healthy controls (SAP(dull)), and 1,
carrying the R55L mutation, was SAP(+).
explanation: >-
Documents allelic heterogeneity: most SH2D1A variants abolish SAP protein,
but some (R55L) preserve expression while remaining functionally
deficient.
environmental:
- name: Primary Epstein-Barr Virus Infection
description: >-
Primary EBV infection is the disease-defining environmental trigger of XLP1.
The genetic lesion is present from birth, but the fulminant infectious
mononucleosis/HLH phenotype is precipitated by the first encounter with the
virus, which was the trigger in 92% of XLP-1 HLH episodes in the Pachlopnik
Schmid cohort. GeneReviews accordingly lists EBV contact as an
agent/circumstance to avoid. Note that EBV is not required for every
manifestation — dysgammaglobulinemia may precede or occur without documented
EBV infection — so this is modeled as a trigger of the acute arm rather than
of the disease as a whole.
exposure_term:
preferred_term: exposure to Epstein-Barr virus
term:
id: ECTO:3000001
label: exposure to virus
effect: Precipitates fulminant infectious mononucleosis and HLH in SAP-deficient males.
influences_mechanisms:
- target: Unterminated Hyperinflammatory Response to Primary EBV Infection
environmental_effect: TRIGGERS
causal_link_type: DIRECT
description: >-
Primary EBV infection supplies the SLAM-ligand-bearing B-cell target
population that SAP-deficient NK and CD8+ T cells cannot clear, and is the
documented precipitant of the great majority of XLP1 HLH episodes.
evidence:
- reference: PMID:21119115
reference_title: Clinical similarities and differences of patients with X-linked lymphoproliferative syndrome type 1 (XLP-1/SAP deficiency) versus type 2 (XLP-2/XIAP deficiency).
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Epstein-Barr virus infection in XLP-1 and XLP-2 was the common trigger of
HLH (XLP-1, 92%; XLP-2, 83%).
explanation: >-
Quantifies EBV infection as the precipitant of 92% of HLH episodes in
XLP-1, supporting a TRIGGERS edge onto the HLH node.
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Individuals with XLP who come into contact with EBV are at risk of
developing HLH and/or lymphoproliferation.
explanation: >-
States the exposure-outcome relationship directly, as an
agent/circumstance to avoid.
evidence:
- reference: PMID:9771704
reference_title: Host response to EBV infection in X-linked lymphoproliferative disease results from mutations in an SH2-domain encoding gene.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
X-linked lymphoproliferative syndrome (XLP or Duncan disease) is
characterized by extreme sensitivity to Epstein-Barr virus (EBV), resulting
in a complex phenotype manifested by severe or fatal infectious
mononucleosis, acquired hypogammaglobulinemia and malignant lymphoma.
explanation: >-
Establishes EBV sensitivity as the defining environmental dimension of the
disease.
- reference: PMID:48119
reference_title: "X-linked recessive progressive combined variable immunodeficiency (Duncan's disease)."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
This study suggests that the Epstein-Barr virus or other viruses triggered
the fatal proliferation of lymphocytes
explanation: >-
The original hypothesis that a viral exposure triggers the fatal
lymphoproliferation, later confirmed as EBV.
prevalence:
- population: Worldwide (males)
measure_type: UNKNOWN
prevalence_class: BAND_1_9_PER_1000000
rate_per_100000: 0.1
notes: >-
Approximately one affected male per million. Two caveats: the source figure
is for X-linked lymphoproliferative syndrome as a whole (XLP1 plus XLP2),
not XLP1 alone, and the source does not state whether the estimate is a
point prevalence or a birth incidence, so measure_type is UNKNOWN. The same
source notes the condition is probably underdiagnosed. An Orphanet-backed
record keyed on ORPHA:538931 would give a second, independently derived
estimate and split XLP1 from XLP2, and is worth adding.
evidence:
- reference: PMID:31754776
reference_title: "X-linked lymphoproliferative syndrome in mainland China: review of clinical, genetic, and immunological characteristic."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
XLP is estimated to affect approximately one per million males
explanation: >-
Source for the approximately one-per-million-males estimate underlying the
1-9 per 1,000,000 band.
treatments:
- name: Allogeneic Hematopoietic Stem Cell Transplantation
description: >-
Allogeneic HSCT is the only known curative therapy for XLP1: it replaces the
SAP-deficient hematopoietic compartment, restoring NK, CD8+ T and iNKT
function. Outcome depends sharply on timing. In the 91-patient Booth cohort,
survival after allogeneic HSCT was 81.4% overall but fell to 50% in patients
who had HLH as a feature of disease, while untransplanted patients who had
had HLH survived only 18.8% of the time. The evidence therefore supports
pre-emptive transplantation in asymptomatic males rather than waiting for an
HLH episode.
therapeutic_modality: CELL_THERAPY
treatment_term:
preferred_term: allogeneic hematopoietic stem cell transplantation
term:
id: NCIT:C15431
label: Hematopoietic Cell Transplantation
target_mechanisms:
- target: SAP Adaptor Deficiency
treatment_effect: RESTORES
description: >-
Donor-derived hematopoiesis reconstitutes SAP-expressing lymphocytes,
correcting the initiating molecular lesion in the hematopoietic
compartment.
evidence:
- reference: PMID:20926771
reference_title: "X-linked lymphoproliferative disease due to SAP/SH2D1A deficiency: a multicenter study on the manifestations, management and outcome of the disease."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Survival after allogeneic HSCT is 81.4% with good immune reconstitution
in the large majority of patients and little evidence of posttransplant
lymphoproliferative disease.
explanation: >-
Good immune reconstitution after HSCT, with resolution of the
lymphoproliferative risk, indicates correction of the underlying SAP
defect in the hematopoietic compartment.
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The only known curative therapy for XLP1 is allogeneic hematopoietic stem
cell transplant (HSCT), which should be strongly considered in all males as
early in life as is feasible, particularly in those who have not developed
symptoms
explanation: >-
Establishes HSCT as the only curative therapy and supports pre-emptive
timing.
- reference: PMID:20926771
reference_title: "X-linked lymphoproliferative disease due to SAP/SH2D1A deficiency: a multicenter study on the manifestations, management and outcome of the disease."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
However, survival falls to 50% in patients with HLH as a feature of
disease.
explanation: >-
Quantifies the outcome penalty of transplanting after HLH rather than
preemptively.
- reference: PMID:20926771
reference_title: "X-linked lymphoproliferative disease due to SAP/SH2D1A deficiency: a multicenter study on the manifestations, management and outcome of the disease."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
HSCT should be undertaken in all patients with HLH, because outcome without
transplant is extremely poor.
explanation: >-
The cohort's management conclusion: HSCT is mandatory once HLH has
occurred.
- name: Rituximab
description: >-
Anti-CD20 monoclonal antibody depletion of B cells removes the EBV-infected
B-cell reservoir that XLP1 NK and CD8+ T cells cannot clear, addressing the
antigen source that sustains the hyperinflammatory state. It is used as part
of the management of fulminant EBV infection / HLH in XLP.
therapeutic_modality: MONOCLONAL_ANTIBODY
treatment_term:
preferred_term: Pharmacotherapy
term:
id: NCIT:C15986
label: Pharmacotherapy
therapeutic_agent:
- preferred_term: rituximab
term:
id: NCIT:C1702
label: Rituximab
- preferred_term: monoclonal antibody
term:
id: NCIT:C20401
label: Monoclonal Antibody
target_mechanisms:
- target: Uncontrolled EBV-Driven B Cell Proliferation
treatment_effect: INHIBITS
description: >-
CD20-directed depletion removes the expanding EBV-infected B-cell
population directly, bypassing the SAP-dependent cytotoxic pathways that
cannot act on it.
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Standard treatment for liver dysfunction/failure, hypogammaglobulinemia
(IVIG or IgG), fulminant EBV infection / HLH (including etoposide and
steroids and consideration of rituximab), lymphoma, colitis, aplastic
anemia, and vasculitis.
explanation: >-
Places rituximab in the management of fulminant EBV infection / HLH,
which is where the EBV-driven B-cell expansion is the therapeutic target.
directness: INDIRECT
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Standard treatment for liver dysfunction/failure, hypogammaglobulinemia
(IVIG or IgG), fulminant EBV infection / HLH (including etoposide and
steroids and consideration of rituximab), lymphoma, colitis, aplastic
anemia, and vasculitis.
explanation: >-
GeneReviews management guidance naming rituximab as a consideration in
fulminant EBV infection / HLH.
- name: Immunoglobulin Replacement Therapy
description: >-
Intravenous or subcutaneous immunoglobulin replaces the antibody the failed
germinal-center reaction cannot generate, preventing the recurrent
respiratory infection and bronchiectasis that untreated dysgammaglobulinemia
causes. It is supportive rather than curative: in the Booth cohort the
majority of untransplanted survivors were maintained on immunoglobulin
replacement.
therapeutic_modality: PROTEIN_REPLACEMENT
treatment_term:
preferred_term: immunoglobulin replacement therapy
term:
id: NCIT:C62710
label: Immunoglobulin Therapy
target_mechanisms:
- target: Failed Class Switching and Antibody Production
treatment_effect: BYPASSES
description: >-
Exogenous polyclonal IgG substitutes for the class-switched antibody that
SAP-deficient T-B collaboration fails to produce; it does not repair the
germinal-center defect.
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Standard treatment for liver dysfunction/failure, hypogammaglobulinemia
(IVIG or IgG), fulminant EBV infection / HLH (including etoposide and
steroids and consideration of rituximab), lymphoma, colitis, aplastic
anemia, and vasculitis.
explanation: >-
Names IVIG/IgG as the standard treatment for the hypogammaglobulinemia
arm of XLP.
evidence:
- reference: PMID:20926771
reference_title: "X-linked lymphoproliferative disease due to SAP/SH2D1A deficiency: a multicenter study on the manifestations, management and outcome of the disease."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Untransplanted patients have an overall survival of 62.5% with the majority
on immunoglobulin replacement therapy, but the outcome for those
untransplanted after HLH is extremely poor (18.8%).
explanation: >-
Documents immunoglobulin replacement as the mainstay for untransplanted
XLP1 patients, and its limits once HLH has occurred.
- name: HLH-Directed Etoposide-Based Therapy
description: >-
Etoposide plus corticosteroids (the HLH-94/HLH-2004 backbone) suppresses the
activated lymphocyte and macrophage compartment driving the hyperinflammatory
state. In XLP1 this is a bridge, not a cure: it controls the acute episode so
that curative HSCT can be performed. The detailed HLH protocol is modeled in
the Hemophagocytic_Lymphohistiocytosis entry.
therapeutic_modality: SMALL_MOLECULE
treatment_term:
preferred_term: chemotherapy
term:
id: NCIT:C15632
label: Chemotherapy
therapeutic_agent:
- preferred_term: etoposide
term:
id: CHEBI:4911
label: etoposide
target_mechanisms:
- target: Unterminated Hyperinflammatory Response to Primary EBV Infection
treatment_effect: INHIBITS
description: >-
Etoposide-based cytoreduction deletes the activated lymphocytes and
macrophages sustaining the cytokine state, interrupting the
hyperinflammatory arm without correcting the SAP defect.
evidence:
- reference: PMID:20301580
reference_title: X-Linked Lymphoproliferative Disease.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Standard treatment for liver dysfunction/failure, hypogammaglobulinemia
(IVIG or IgG), fulminant EBV infection / HLH (including etoposide and
steroids and consideration of rituximab), lymphoma, colitis, aplastic
anemia, and vasculitis.
explanation: >-
Names etoposide and steroids as the standard treatment for the fulminant
EBV infection / HLH manifestation this node represents.
evidence:
- reference: PMID:20926771
reference_title: "X-linked lymphoproliferative disease due to SAP/SH2D1A deficiency: a multicenter study on the manifestations, management and outcome of the disease."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The advent of better treatment strategies for HLH and malignancy has
greatly reduced mortality for these patients, but HLH still remains the
most severe feature of XLP1.
explanation: >-
Attributes the modern mortality reduction to improved HLH-directed
treatment, while noting it does not eliminate HLH as the dominant risk.