Trisomy 13 (Patau syndrome) is an autosomal trisomy caused by the presence of an extra chromosome 13 — most often free, homogeneous trisomy, less commonly mosaic trisomy or a Robertsonian translocation. Whole-chromosome gene-dosage imbalance disrupts midline and forebrain development and multiple organ systems, producing the classic clinical triad of cleft lip/palate, microphthalmia/anophthalmia, and postaxial polydactyly, together with holoprosencephaly, congenital heart defects, scalp defects, ear anomalies, and capillary hemangiomas. Expression is highly variable, and the severe birth defects (brain and heart) drive high in-utero and perinatal mortality.
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name: Trisomy 13
creation_date: "2026-08-22T00:00:00Z"
description: >-
Trisomy 13 (Patau syndrome) is an autosomal trisomy caused by the presence of an
extra chromosome 13 — most often free, homogeneous trisomy, less commonly mosaic
trisomy or a Robertsonian translocation. Whole-chromosome gene-dosage imbalance
disrupts midline and forebrain development and multiple organ systems, producing
the classic clinical triad of cleft lip/palate, microphthalmia/anophthalmia, and
postaxial polydactyly, together with holoprosencephaly, congenital heart defects,
scalp defects, ear anomalies, and capillary hemangiomas. Expression is highly
variable, and the severe birth defects (brain and heart) drive high in-utero and
perinatal mortality.
category: Genetic
synonyms:
- Patau syndrome
- trisomy 13 syndrome
- complete trisomy 13
parents:
- hereditary disease
- chromosomal disorder
disease_term:
preferred_term: trisomy 13
term:
id: MONDO:0018068
label: trisomy 13
has_subtypes:
- name: Full trisomy 13
display_name: Free, homogeneous trisomy 13
description: >-
The most common form (~80%) — three complete copies of chromosome 13 in all
cells from meiotic nondisjunction; associated with the full, severe phenotype.
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Most frequent cytogenetic abnormality is free and homogeneous trisomy 13 (80.0%), rarely being detected trisomy mosaics or Robertsonian translocations."
explanation: Establishes free homogeneous trisomy 13 as the predominant (~80%) cytogenetic form.
- name: Mosaic or translocation trisomy 13
display_name: Mosaic trisomy 13 or Robertsonian translocation
description: >-
Mosaic trisomy (two cell lines) or a Robertsonian translocation. Mosaic cases
typically show a less dysmorphic appearance and longer survival than full
trisomy 13.
evidence:
- reference: PMID:25943247
reference_title: "Cutaneous manifestations in trisomy 13 mosaicism: A rare case and review of the literature."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "As a rule, the phenotype is mitigated to a less dysmorphic appearance and longer survival"
explanation: Documents the milder phenotype and longer survival of mosaic trisomy 13.
prevalence:
- population: Live births
measure_type: BIRTH_PREVALENCE
prevalence_class: BAND_1_9_PER_100000
rate_per_100000: 6.7
rate_low: 5.0
rate_high: 10.0
notes: >-
Incidence ~1 in 10,000 to 1 in 20,000 (5-10 per 100,000). Live-born prevalence
is reduced by high in-utero and perinatal mortality.
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Patau syndrome has an incidence of 1/10.000-20.000, the clinical diagnosis being suggested by the triad cleft lip and palate, microphthalmia/anophthalmia and postaxial polydactyly."
explanation: Provides the incidence range and the diagnostic clinical triad.
pathophysiology:
- name: Trisomy 13 (Extra Chromosome 13)
biological_scale: MOLECULAR
description: >-
Presence of a third copy of chromosome 13 — free homogeneous trisomy (most
cases), mosaic trisomy, or a Robertsonian translocation.
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Most frequent cytogenetic abnormality is free and homogeneous trisomy 13 (80.0%), rarely being detected trisomy mosaics or Robertsonian translocations."
explanation: Establishes the causal lesion and its cytogenetic forms.
downstream:
- target: Chromosome 13 Gene Dosage Imbalance
causal_link_type: DIRECT
description: The extra chromosome raises the dosage of all chromosome 13 genes.
- name: Chromosome 13 Gene Dosage Imbalance
biological_scale: MOLECULAR
description: >-
Increased dosage across chromosome 13 genes disrupts midline and forebrain
development and multiple organ systems, producing a variably expressive pattern
of severe malformations rather than acting through a single critical gene.
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Patau syndrome is a disease with variable expression and is characterized by a pattern of abnormal prenatal development characterized by facial dysmorphia, polydactyly and severe birth defects (heart, brain) that generate an increased in utero and perinatal mortality."
explanation: Describes the variably expressive multisystem malformation pattern and its mortality.
downstream:
- target: Impaired Forebrain/Midline Development
causal_link_type: DIRECT
description: Disruption of forebrain and midline development, with holoprosencephaly at the severe end.
- target: Congenital Heart Defects
causal_link_type: DIRECT
- target: Postaxial Polydactyly
causal_link_type: DIRECT
- name: Impaired Forebrain/Midline Development
biological_scale: TISSUE
description: >-
Failure of normal forebrain cleavage and midline development produces
holoprosencephaly (up to cyclopia at the severe extreme) and midline facial
clefting.
locations:
- preferred_term: forebrain
term:
id: UBERON:0001890
label: forebrain
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "postaxial polydactyly (7 cases), scalp defects (6 cases), congenital heart anomalies (10 cases, 6 patients with atrial septal defect), complete holoprosencephaly (4 cases), ear abnormalities (11 cases), broad nasal root (10 cases)"
explanation: Documents holoprosencephaly among the malformation counts in the cohort.
downstream:
- target: Holoprosencephaly
causal_link_type: DIRECT
- target: Orofacial Cleft
causal_link_type: DIRECT
phenotypes:
- category: Craniofacial
name: Orofacial Cleft
frequency: FREQUENT
diagnostic: true
notes: Cleft lip and palate; a component of the classic diagnostic triad.
phenotype_term:
preferred_term: Cleft lip and palate
term:
id: HP:0000202
label: Orofacial cleft
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "the clinical diagnosis being suggested by the triad cleft lip and palate, microphthalmia/anophthalmia and postaxial polydactyly"
explanation: Cleft lip and palate is a component of the diagnostic triad.
- category: Ocular
name: Microphthalmia/Anophthalmia
frequency: FREQUENT
notes: Microphthalmia or anophthalmia (cyclopia at the severe extreme); a component of the classic diagnostic triad.
phenotype_term:
preferred_term: Microphthalmia/anophthalmia
term:
id: HP:0000568
label: Microphthalmia
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "ocular abnormalities (microphthalmia/anophthalmia--7 cases; cyclopia--1 case)"
explanation: Microphthalmia/anophthalmia in 7/14 cohort cases; a triad component.
- category: Limbs
name: Postaxial Polydactyly
frequency: FREQUENT
diagnostic: true
notes: A component of the classic diagnostic triad.
phenotype_term:
preferred_term: Postaxial polydactyly
term:
id: HP:0100259
label: Postaxial polydactyly
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "postaxial polydactyly (7 cases), scalp defects (6 cases), congenital heart anomalies (10 cases, 6 patients with atrial septal defect), complete holoprosencephaly (4 cases), ear abnormalities (11 cases), broad nasal root (10 cases)"
explanation: Postaxial polydactyly in 7/14 cohort cases; a triad component.
- category: Neurologic
name: Holoprosencephaly
frequency: OCCASIONAL
phenotype_term:
preferred_term: Holoprosencephaly
term:
id: HP:0001360
label: Holoprosencephaly
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "postaxial polydactyly (7 cases), scalp defects (6 cases), congenital heart anomalies (10 cases, 6 patients with atrial septal defect), complete holoprosencephaly (4 cases), ear abnormalities (11 cases), broad nasal root (10 cases)"
explanation: Complete holoprosencephaly in 4/14 cohort cases.
- category: Cardiac
name: Congenital Heart Defects
frequency: FREQUENT
notes: Atrial septal defect was the most common in the cohort.
phenotype_term:
preferred_term: Congenital heart defect
term:
id: HP:0001627
label: Abnormal heart morphology
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "postaxial polydactyly (7 cases), scalp defects (6 cases), congenital heart anomalies (10 cases, 6 patients with atrial septal defect), complete holoprosencephaly (4 cases), ear abnormalities (11 cases), broad nasal root (10 cases)"
explanation: Congenital heart anomalies in 10/14 cohort cases (6 with atrial septal defect).
- category: Skin
name: Scalp Defects (Aplasia Cutis Congenita)
frequency: FREQUENT
phenotype_term:
preferred_term: Scalp defect (aplasia cutis congenita)
term:
id: HP:0001057
label: Aplasia cutis congenita
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "postaxial polydactyly (7 cases), scalp defects (6 cases), congenital heart anomalies (10 cases, 6 patients with atrial septal defect), complete holoprosencephaly (4 cases), ear abnormalities (11 cases), broad nasal root (10 cases)"
explanation: Scalp defects (aplasia cutis) in 6/14 cohort cases.
- category: Craniofacial
name: Ear Anomalies
frequency: FREQUENT
phenotype_term:
preferred_term: Abnormal ear morphology
term:
id: HP:0000598
label: Abnormality of the ear
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "postaxial polydactyly (7 cases), scalp defects (6 cases), congenital heart anomalies (10 cases, 6 patients with atrial septal defect), complete holoprosencephaly (4 cases), ear abnormalities (11 cases), broad nasal root (10 cases)"
explanation: Ear abnormalities in 11/14 cohort cases.
- category: Craniofacial
name: Broad Nasal Root
frequency: FREQUENT
phenotype_term:
preferred_term: Broad nasal root
term:
id: HP:0000431
label: Wide nasal bridge
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "postaxial polydactyly (7 cases), scalp defects (6 cases), congenital heart anomalies (10 cases, 6 patients with atrial septal defect), complete holoprosencephaly (4 cases), ear abnormalities (11 cases), broad nasal root (10 cases)"
explanation: Broad nasal root in 10/14 cohort cases.
- category: Skin
name: Capillary Hemangioma
frequency: FREQUENT
phenotype_term:
preferred_term: Capillary hemangioma
term:
id: HP:0001028
label: Hemangioma
evidence:
- reference: PMID:25943247
reference_title: "Cutaneous manifestations in trisomy 13 mosaicism: A rare case and review of the literature."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Capillary hemangiomas are a common feature of full trisomy 13, seen in 27-56% of all cases."
explanation: Capillary hemangiomas reported in 27-56% of full trisomy 13.
genetic:
- name: Trisomy 13 (extra chromosome 13)
association: Causal
notes: >-
Presence of an extra copy of chromosome 13 — free homogeneous trisomy (~80%,
typically meiotic nondisjunction), mosaic trisomy, or a Robertsonian
translocation (copy-number gain). No coordinate slot exists in the schema; the
whole-chromosome gain is recorded here in prose.
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Most frequent cytogenetic abnormality is free and homogeneous trisomy 13 (80.0%), rarely being detected trisomy mosaics or Robertsonian translocations."
explanation: Gives the cytogenetic breakdown of the causative trisomy.
diagnosis:
- name: Karyotype Analysis
presence: 47,XX,+13 or 47,XY,+13
notes: Clinical diagnosis suggested by the triad; confirmed cytogenetically (karyotype), often prenatally.
evidence:
- reference: PMID:24340511
reference_title: "Phenotypic variability in Patau syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "the clinical diagnosis being suggested by the triad cleft lip and palate, microphthalmia/anophthalmia and postaxial polydactyly"
explanation: The clinical triad prompts cytogenetic confirmation of trisomy 13.
treatments:
- name: Supportive and Palliative Care
description: >-
No curative therapy exists. Management is supportive and individualized —
respiratory, feeding, and cardiac support with attention to the severe
malformation burden; intensity of care is decided with the family.
treatment_term:
preferred_term: supportive care
term:
id: NCIT:C15747
label: Supportive Care
references:
- reference: PMID:24340511
title: "Phenotypic variability in Patau syndrome."
- reference: PMID:25943247
title: "Cutaneous manifestations in trisomy 13 mosaicism: A rare case and review of the literature."