TUBGCP6-related Microcephaly and Chorioretinopathy

Mendelian MONDO:0009624 Pathograph 20 Show in embeddings browser hereditary disease congenital nervous system disorder eye disease

TUBGCP6-related microcephaly and chorioretinopathy (MCCRP1) is a rare autosomal-recessive neuro-ophthalmic disorder caused by biallelic TUBGCP6 variants. The reported phenotype combines congenital microcephaly and neurodevelopmental impairment with variable chorioretinal abnormalities and visual impairment. Short stature, pachygyria or abnormal sulcation, ventriculomegaly, cerebellar vermis hypoplasia, seizures, and retinal detachment have each been reported in source-specific cohorts or families. TUBGCP6 encodes a component of the gamma-tubulin ring complex. In DLD-1 cells, acute experimental degradation of endogenous TUBGCP6 causes parallel defects in centriole duplication and centrosome-driven microtubule nucleation, with monopolar-spindle mitotic arrest and reduced proliferation. These experiments establish cellular functions of TUBGCP6 but do not test patient alleles or neural or retinal developmental models, so the bridge from the cellular phenotype to the human brain and eye manifestations remains indirect. The combination of microcephaly and chorioretinopathy can resemble congenital toxoplasmosis or cytomegalovirus infection. Molecular confirmation is important because reported alleles include small sequence changes and a structural deletion detected by genome sequencing.

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1
Inheritance
8
Pathophys.
12
Phenotypes
1
Gaps
20
Pathograph
1
Genes
1
Medical Actions
4
Differentials
7
References
👪

Inheritance

1
Autosomal recessive inheritance HP:0000007
Affected individuals have biallelic TUBGCP6 variants. Reported families include homozygous and compound-heterozygous states; compound heterozygosity is therefore one observed configuration, not a disease-wide requirement.
Autosomal recessive inheritance
Show evidence (1 reference)
PMID:37031378 SUPPORT Human Clinical
"Autosomal recessive microcephaly and chorioretinopathy-1 (MCCRP1) is a rare Mendelian disorder resulting from biallelic loss of function variants in Tubulin-Gamma Complex Associated Protein 6 (TUBGCP6, MIM#610053)."
Directly states the recessive, biallelic disease association.
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Discussions and Knowledge Gaps

1
Do biallelic patient alleles reproduce the acute TUBGCP6-depletion phenotype in neural and retinal developmental systems, and which cellular defect drives each organ phenotype?
KNOWLEDGE GAP OPEN gap_tubgcp6_patient_allele_and_developmental_models
Acute loss of endogenously tagged TUBGCP6 in DLD-1 cells has a specific, rescuable effect on centriole duplication and also reduces nucleation and proliferation. The model does not contain a disease allele and is neither neural nor retinal. Human reports establish the brain and eye endpoints but do not measure the intervening mechanism. Patient-derived cells, cerebral or retinal organoids, and allele-specific rescue experiments are needed to test the bridge and to distinguish effects of nucleation, centriole duplication, mitotic arrest, and other unknown intermediates.
Show evidence (2 references)
PMID:31874114 SUPPORT In Vitro
"Expression of a TUBGCP6 transgene fully rescued centriole duplication in auxin-treated TUBGCP6AID cells, demonstrating that this transgene was able to functionally compensate for the loss of the endogenous protein (Fig. S5, F and G)."
Establishes a specific rescuable cellular phenotype in the acute DLD-1 model.
PMID:37031378 SUPPORT Human Clinical
"Clinical features of this disorder include microcephaly, cognitive impairment, dysmorphic features, and variable ophthalmological anomalies including chorioretinopathy."
Establishes the human endpoints without testing the cellular bridge.
⚙

Pathophysiology

8
Reduced TUBGCP6 Function
The 2023 disease review describes biallelic TUBGCP6 variants as loss-of-function, and reported alleles include sequence changes and deletions. That disease-level assignment still requires allele-level calibration: the founding p.Ter1820Gly read-through allele was predicted to extend the protein or promote non-stop-mediated decay but was not functionally tested in the founding report. Acute depletion of TUBGCP6 in DLD-1 cells models reduced protein availability, not any specific patient genotype.
TUBGCP6 hgnc:18127 HUGO Gene Nomenclature Committee (hgnc) Relation: this pathophysiological event involves this gene This pathophysiological event involves TUBGCP6 (hgnc:18127). hgnc:18127 is a gene from the HUGO Gene Nomenclature Committee.
Genetic context allele_type: reported sequence and deletion alleles with predicted or asserted loss of function variant_origin: GERMLINE functional_impact_category: LOSS_OF_FUNCTION
Biallelic variants are required, but the allelic configuration varies among families. The disease literature assigns loss of function broadly, but p.Ter1820Gly remains a predicted rather than experimentally demonstrated loss-of-function allele.
gamma-tubulin ring complex GO:0000931 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves gamma-tubulin ring complex (GO:0000931). GO:0000931 is a cellular component from the Gene Ontology.
Show evidence (4 references)
PMID:37031378 SUPPORT Human Clinical
"Autosomal recessive microcephaly and chorioretinopathy-1 (MCCRP1) is a rare Mendelian disorder resulting from biallelic loss of function variants in Tubulin-Gamma Complex Associated Protein 6 (TUBGCP6, MIM#610053)."
Supports the disease-level biallelic loss-of-function assignment.
PMID:39634241 SUPPORT Human Clinical
"Compound heterozygous variants were identified in TUBGCP6 including an eleven base pair deletion (inherited from father) and 405 base pair large deletion (inherited from mother)."
Documents two deletion alleles in trans in an affected family.
PMID:22279524 SUPPORT Human Clinical
"This read-through variant is predicted to incorporate 16 extra amino acids at the C-terminus of TUBGCP6 and/or may accelerate mRNA degradation via non-stop mediated decay."
Supports a predicted function-reducing mechanism for the founding allele while making clear that the mechanism was predictive, not experimentally demonstrated.
+ 1 more reference
Reduced Centrosome-Driven Microtubule Nucleation
Acute degradation of endogenously tagged TUBGCP6 in DLD-1 cells reduced centrosome-driven microtubule nucleation. This is a direct cellular assay in a colon-cancer cell line; neither neural nor retinal progenitors were tested.
microtubule nucleation GO:0007020 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased microtubule nucleation (GO:0007020). GO:0007020 is a biological process from the Gene Ontology. ↓ DECREASED
Show evidence (1 reference)
PMID:31874114 SUPPORT In Vitro
"Cells depleted of TUBGCP6 also exhibited mitotic defects similar to those observed following loss of WBP11, including reduced centrosome-driven microtubule nucleation and mitotic arrest with a monopolar spindle (Fig. 2, G and H; Fig. 7, E–G; and Videos 5 and 6)."
Directly reports reduced centrosome-driven microtubule nucleation.
Centriole Duplication Failure
Acute degradation of both endogenously tagged TUBGCP6 alleles in DLD-1 cells produced a pronounced failure of centriole duplication. Rescue by a TUBGCP6 transgene supports perturbation specificity, but this remains an acute cell-line model rather than a germline patient-allele assay.
centriole replication GO:0007099 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased centriole replication (GO:0007099). GO:0007099 is a biological process from the Gene Ontology. ↓ DECREASED
Show evidence (2 references)
PMID:31874114 SUPPORT In Vitro
"Degradation of TUBGCP6 led to a pronounced failure of centriole duplication that was similar to that observed in WBP11AID cells (Fig. 7, A–C)."
Directly reports centriole-duplication failure after TUBGCP6 loss.
PMID:31874114 SUPPORT In Vitro
"Expression of a TUBGCP6 transgene fully rescued centriole duplication in auxin-treated TUBGCP6AID cells, demonstrating that this transgene was able to functionally compensate for the loss of the endogenous protein (Fig. S5, F and G)."
Rescue supports specificity of the acute TUBGCP6-depletion phenotype.
Monopolar-Spindle Mitotic Arrest
TUBGCP6-depleted DLD-1 cells developed mitotic arrest with a monopolar spindle and predominantly underwent mitotic slippage at later observation times. These are in-vitro cell-division phenotypes.
mitotic spindle organization GO:0007052 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated mitotic spindle organization (GO:0007052). GO:0007052 is a biological process from the Gene Ontology. ↕ DYSREGULATED
Show evidence (1 reference)
PMID:31874114 SUPPORT In Vitro
"Cells depleted of TUBGCP6 also exhibited mitotic defects similar to those observed following loss of WBP11, including reduced centrosome-driven microtubule nucleation and mitotic arrest with a monopolar spindle (Fig. 2, G and H; Fig. 7, E–G; and Videos 5 and 6)."
Directly reports the monopolar-spindle mitotic arrest phenotype.
Reduced Cell Proliferation
Acute TUBGCP6 depletion dramatically reduced proliferation of DLD-1 cells. Reduced developmental progenitor output is a plausible bridge to the brain, chorioretinal, and somatic-growth endpoints, but that bridge has not been tested in patient-derived, neural, or retinal models.
cell population proliferation GO:0008283 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased cell population proliferation (GO:0008283). GO:0008283 is a biological process from the Gene Ontology. ↓ DECREASED
Show evidence (1 reference)
PMID:31874114 SUPPORT In Vitro
"Similar to WBP11AID cells, the mitotic deficits dramatically reduced the proliferation of cells depleted of TUBGCP6 (Fig. 7 H)."
Directly reports reduced proliferation in TUBGCP6-depleted cells.
Abnormal Cerebral Development
Human findings include congenital severe microcephaly, diffuse pachygyria, small cerebral hemispheres, cerebellar vermis hypoplasia, developmental and intellectual impairment, and occasional seizures. Later reports extend the imaging spectrum to agyria/pachygyria, ventriculomegaly, and abnormal sulcation. These observations define the tissue endpoint rather than proving the upstream cellular bridge.
Show evidence (2 references)
PMID:22279524 SUPPORT Human Clinical
"Magnetic resonance imaging shows diffuse pachygyria (Figure 2, C). The cerebral hemispheres are small relative to the cerebellum, which has a hypoplastic vermis (Figure 2, D)."
Directly documents the cerebral malformation pattern in the original cohort.
PMID:39634241 SUPPORT Human Clinical
"We report third trimester microcephaly with ventriculomegaly and abnormal sulcation as part of the antenatal presentation for this condition."
Extends the prenatal cerebral-imaging spectrum in one family.
Abnormal Chorioretinal Development
The original cohort had underdeveloped retina and choroid with focal areas of bare sclera, scalloped retina, abnormal peripheral tissue, vitreoretinal traction, and risk of retinal detachment. This anatomy is better represented by broad abnormal chorioretinal morphology than by assuming a uniform progressive dystrophy.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"The retina and choroid are underdeveloped and have focal defects that reveal bare sclera."
Directly describes abnormal chorioretinal development.
Reduced Somatic Growth
Short stature is reported in TUBGCP6-affected individuals, including the proband with compound-heterozygous deletion alleles. The relationship to the DLD-1 proliferation phenotype is plausible but untested.
Show evidence (2 references)
PMID:39634241 SUPPORT Human Clinical
"We present the first Indian family with an affected child and sibling fetus with microcephaly, dysmorphism, and agyria/pachygyria complex on brain imaging in both and short stature, intellectual disability, and visual impairment in proband."
Directly reports short stature in the affected proband.
PMID:25344692 SUPPORT Human Clinical
"Here we identify mutations in the genes encoding PLK4 kinase, a master regulator of centriole duplication, and its substrate TUBGCP6 in individuals with microcephalic primordial dwarfism and additional congenital anomalies, including retinopathy, thereby extending the human phenotypic spectrum..."
Supports growth restriction in the combined PLK4/TUBGCP6 ascertainment; the source abstract does not separate gene-specific counts.
⬡

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence and cross-linked metadata.
Pathograph: causal mechanism network for TUBGCP6-related Microcephaly and Chorioretinopathy Interactive directed graph showing how pathophysiology mechanisms, phenotypes, genetic factors and variants, experimental models, environmental triggers, and treatments relate through causal and linked edges.
●

Phenotypes

12
Eye 3
Chorioretinopathy Abnormal chorioretinal morphology HP:0000532 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Abnormal chorioretinal morphology (HP:0000532). HP:0000532 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"The retina and choroid are underdeveloped and have focal defects that reveal bare sclera."
Directly describes the chorioretinal morphology.
Visual Impairment HP:0000505 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Visual impairment (HP:0000505). HP:0000505 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:37031378 SUPPORT Human Clinical
"visual impairment becomes evident during the first year of life"
Directly reports early visual impairment.
Retinal Detachment HP:0000541 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Retinal detachment (HP:0000541). HP:0000541 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"Condensations of vitreous may attach to the retina in transition regions between scalloped and gray tissue, marking points of traction for retinal detachment."
Directly describes traction associated with retinal detachment.
Head and Neck 2
Microcephaly HP:0000252 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Microcephaly (HP:0000252). HP:0000252 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"All patients are born with microcephaly, a sloping forehead, diminutive anterior fontanelle, and sutural ridging (Figure 2, A)."
Directly documents congenital microcephaly in the original cohort.
Sloping Forehead HP:0000340 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Sloping forehead (HP:0000340). HP:0000340 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"All patients are born with microcephaly, a sloping forehead, diminutive anterior fontanelle, and sutural ridging (Figure 2, A)."
Directly reports sloping forehead in the founding cohort.
Nervous System 6
Intellectual Disability HP:0001249 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Intellectual disability (HP:0001249). HP:0001249 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:39634241 SUPPORT Human Clinical
"We present the first Indian family with an affected child and sibling fetus with microcephaly, dysmorphism, and agyria/pachygyria complex on brain imaging in both and short stature, intellectual disability, and visual impairment in proband."
Directly reports intellectual disability in the affected proband.
Global Developmental Delay HP:0001263 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Global developmental delay (HP:0001263). HP:0001263 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"Children walk independently between 14 and 36 months of age and language emerges at an appropriate age but remains rudimentary."
Documents delayed walking and limited language development.
Pachygyria HP:0001302 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Pachygyria (HP:0001302). HP:0001302 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"Magnetic resonance imaging shows diffuse pachygyria (Figure 2, C)."
Directly reports diffuse pachygyria on MRI.
Hypoplasia of the Corpus Callosum HP:0002079 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Hypoplasia of the corpus callosum (HP:0002079). HP:0002079 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"area of the corpus callosum is approximately half that of an age- matched control child (2.75 cm 2 versus 5.61 cm 2)."
Supports reduced callosal size in one child; the hypoplasia term is an anatomical interpretation rather than source wording.
Cerebellar Vermis Hypoplasia HP:0001320 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Cerebellar vermis hypoplasia (HP:0001320). HP:0001320 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"The cerebral hemispheres are small relative to the cerebellum, which has a hypoplastic vermis (Figure 2, D)."
Directly reports cerebellar vermis hypoplasia on MRI.
Seizure 2/9 (22%) in the original Mennonite cohort HP:0001250 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Seizure (HP:0001250). HP:0001250 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"Two of nine patients (22%) have epilepsy: one started having drop attacks in late childhood and another developed nocturnal epilepsy as an adult."
Gives the exact cohort-specific count and seizure presentations.
Growth 1
Short Stature HP:0004322 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Short stature (HP:0004322). HP:0004322 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:39634241 SUPPORT Human Clinical
"We present the first Indian family with an affected child and sibling fetus with microcephaly, dysmorphism, and agyria/pachygyria complex on brain imaging in both and short stature, intellectual disability, and visual impairment in proband."
Directly reports short stature in the affected proband.
🧬

Genetic Associations

1
TUBGCP6 (Causative)
Gene: TUBGCP6 (tubulin gamma complex associated protein 6) hgnc:18127 HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is TUBGCP6 (tubulin gamma complex associated protein 6), annotated with TUBGCP6 (hgnc:18127). hgnc:18127 is a gene from the HUGO Gene Nomenclature Committee.
Show evidence (1 reference)
PMID:37031378 SUPPORT Human Clinical
"biallelic loss of function variants in Tubulin-Gamma Complex Associated Protein 6 (TUBGCP6, MIM#610053)"
Names TUBGCP6 as the biallelic causative gene.
💊

Medical Actions

1
Genetic Counseling
Action: Genetic CounselingNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Genetic Counseling (NCIT:C15240). NCIT:C15240 is a clinical intervention from the NCI Thesaurus. NCIT:C15240
Establishing the biallelic TUBGCP6 diagnosis can inform family reproductive planning. The cited source supports that management consequence but does not state a numeric recurrence risk, surveillance schedule, or treatment outcome, so none is asserted here.
Show evidence (1 reference)
PMID:37031378 SUPPORT Human Clinical
"it is important to recognize and diagnose this syndrome in view of its impact on patient health management and familial reproductive plans"
Supports reproductive-planning implications of molecular recognition; it does not provide a counseling protocol or a numeric recurrence figure.
🔬

Diagnosis

2
Ophthalmological examination
Ophthalmological assessment can characterize the retina, choroid, and vitreoretinal interface. The original description documents underdevelopment, focal defects, and traction associated with detachment rather than one uniform dystrophic pattern.
eye examination NCIT:C38060 NCI Thesaurus (NCIT)
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"The retina and choroid are underdeveloped and have focal defects that reveal bare sclera."
Documents the ocular anatomy that ophthalmological evaluation must characterize.
Sequence and structural-variant-sensitive genetic testing
Confirmation requires two pathogenic TUBGCP6 alleles. Testing should be able to detect small sequence variants and deletions or other structural variants; genome sequencing identified an 11-base-pair deletion in trans with a 405-base-pair deletion in one family.
genetic testing NCIT:C15709 NCI Thesaurus (NCIT)
Show evidence (1 reference)
PMID:39634241 SUPPORT Human Clinical
"Genome sequencing through the Indian Undiagnosed Disease Program (I-UDP) confirmed the diagnosis in both proband and sibling fetus. Compound heterozygous variants were identified in TUBGCP6 including an eleven base pair deletion (inherited from father) and 405 base pair large deletion (inherited..."
Directly supports genome sequencing and deletion-sensitive analysis for molecular confirmation.
🩻

Imaging Findings

3
Diffuse pachygyria on brain MRI
Diffuse pachygyria was documented by MRI in the original cohort.
Mri Diffuse
Pachygyria HP:0001302 Human Phenotype Ontology (HP) brain UBERON:0000955 Uberon multi-species anatomy ontology (UBERON)
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"Microcephaly with chorioretinopathy. The phenotype was originally described by Victor McKusick ... Magnetic resonance imaging shows diffuse pachygyria (Figure 2, C). ... Microcephaly and chorioretinopathy due to a homozygous TUBGCP6 mutation."
Retains the diffuse-pachygyria observation and restores the microcephaly/chorioretinopathy context and the figure's explicit TUBGCP6 attribution. Ellipses mark omitted source text in order.
Cerebellar vermis hypoplasia on brain MRI
A hypoplastic cerebellar vermis accompanied small cerebral hemispheres on MRI.
Mri
Cerebellar vermis hypoplasia HP:0001320 Human Phenotype Ontology (HP) cerebellar vermis UBERON:0004720 Uberon multi-species anatomy ontology (UBERON)
Show evidence (1 reference)
PMID:22279524 SUPPORT Human Clinical
"The cerebral hemispheres are small relative to the cerebellum, which has a hypoplastic vermis (Figure 2, D)."
Directly reports cerebellar vermis hypoplasia on MRI.
Prenatal ventriculomegaly and abnormal sulcation on fetal imaging
Ventriculomegaly and abnormal sulcation were reported in the third trimester. The cached abstract does not identify the imaging modality, so OTHER is used rather than inferring ultrasound or MRI.
Other
Ventriculomegaly HP:0002119 Human Phenotype Ontology (HP) brain UBERON:0000955 Uberon multi-species anatomy ontology (UBERON)
Show evidence (1 reference)
PMID:39634241 SUPPORT Human Clinical
"We report third trimester microcephaly with ventriculomegaly and abnormal sulcation as part of the antenatal presentation for this condition."
Directly reports the prenatal findings without specifying modality.
🌍

Epidemiology

2
Molecularly confirmed cases reported before the 2023 series
The 2023 review stated that seven molecularly confirmed patients from five unrelated families had previously been reported. This is a literature case count, not a population prevalence estimate.
Show evidence (1 reference)
PMID:37031378 SUPPORT Human Clinical
"To date, only seven molecularly confirmed patients from five unrelated families have been reported."
Gives the source-specific pre-existing case and family count.
Cases added by the 2023 series
The 2023 report added four unrelated patients, including one prenatal diagnosis. This report-specific increment is kept separate from the prior case count to avoid an inferred pooled denominator.
Show evidence (1 reference)
PMID:37031378 SUPPORT Human Clinical
"We report an additional four unrelated patients with TUBGCP6 variants including one prenatal diagnosis and review the clinical phenotypes and genotypes of all the known cases."
Gives the report-specific increment and prenatal case.
🔀

Differential Diagnoses

4

Conditions with similar clinical presentations that must be differentiated from TUBGCP6-related Microcephaly and Chorioretinopathy:

Congenital toxoplasmosis or cytomegalovirus infection
Overlapping Features Acquired congenital infection can combine microcephaly with chorioretinal abnormalities. Infection testing and demonstration of biallelic TUBGCP6 variants distinguish these acquired conditions from MCCRP1.
Distinguishing Features
  • MCCRP1 is confirmed by biallelic TUBGCP6 variants.
Show evidence (1 reference)
PMID:37031378 SUPPORT Human Clinical
"The clinical presentation resembles the findings in some acquired conditions such as congenital toxoplasmosis and cytomegalovirus infections; thus, it is important to recognize and diagnose this syndrome in view of its impact on patient health management and familial reproductive plans."
Directly identifies the acquired-infection differential.
{ }

Source YAML

click to show
name: TUBGCP6-related Microcephaly and Chorioretinopathy
creation_date: "2026-08-20T17:45:00Z"
category: Mendelian
disease_term:
  preferred_term: microcephaly and chorioretinopathy 1
  term:
    id: MONDO:0009624
    label: microcephaly and chorioretinopathy 1
description: >-
  TUBGCP6-related microcephaly and chorioretinopathy (MCCRP1) is a rare
  autosomal-recessive neuro-ophthalmic disorder caused by biallelic TUBGCP6
  variants. The reported phenotype combines congenital microcephaly and
  neurodevelopmental impairment with variable chorioretinal abnormalities and
  visual impairment. Short stature, pachygyria or abnormal sulcation,
  ventriculomegaly, cerebellar vermis hypoplasia, seizures, and retinal
  detachment have each been reported in source-specific cohorts or families.

  TUBGCP6 encodes a component of the gamma-tubulin ring complex. In DLD-1 cells,
  acute experimental degradation of endogenous TUBGCP6 causes parallel defects
  in centriole duplication and centrosome-driven microtubule nucleation, with
  monopolar-spindle mitotic arrest and reduced proliferation. These experiments
  establish cellular functions of TUBGCP6 but do not test patient alleles or
  neural or retinal developmental models, so the bridge from the cellular
  phenotype to the human brain and eye manifestations remains indirect.

  The combination of microcephaly and chorioretinopathy can resemble congenital
  toxoplasmosis or cytomegalovirus infection. Molecular confirmation is
  important because reported alleles include small sequence changes and a
  structural deletion detected by genome sequencing.
parents:
- hereditary disease
- congenital nervous system disorder
- eye disease
references:
- reference: PMID:37031378
  title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
- reference: PMID:39634241
  title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
- reference: PMID:22279524
  title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
- reference: PMID:25344692
  title: Mutations in PLK4, encoding a master regulator of centriole biogenesis, cause microcephaly, growth failure and retinopathy.
- reference: PMID:31874114
  title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
- reference: PMID:25124931
  title: Phenotypic overlap between familial exudative vitreoretinopathy and microcephaly, lymphedema, and chorioretinal dysplasia caused by KIF11 mutations.
- reference: PMID:25817018
  title: Mutations in TUBGCP4 alter microtubule organization via the γ-tubulin ring complex in autosomal-recessive microcephaly with chorioretinopathy.
inheritance:
- name: Autosomal recessive inheritance
  inheritance_term:
    preferred_term: Autosomal recessive inheritance
    term:
      id: HP:0000007
      label: Autosomal recessive inheritance
  description: >-
    Affected individuals have biallelic TUBGCP6 variants. Reported families
    include homozygous and compound-heterozygous states; compound heterozygosity
    is therefore one observed configuration, not a disease-wide requirement.
  evidence:
  - reference: PMID:37031378
    reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Autosomal recessive microcephaly and chorioretinopathy-1 (MCCRP1) is a rare
      Mendelian disorder resulting from biallelic loss of function variants in
      Tubulin-Gamma Complex Associated Protein 6 (TUBGCP6, MIM#610053).
    explanation: Directly states the recessive, biallelic disease association.
pathophysiology:
- name: Reduced TUBGCP6 Function
  role: TRIGGER
  biological_scale: MOLECULAR
  description: >-
    The 2023 disease review describes biallelic TUBGCP6 variants as
    loss-of-function, and reported alleles include sequence changes and
    deletions. That disease-level assignment still requires allele-level
    calibration: the founding p.Ter1820Gly read-through allele was predicted to
    extend the protein or promote non-stop-mediated decay but was not
    functionally tested in the founding report. Acute depletion of TUBGCP6 in
    DLD-1 cells models reduced protein availability, not any specific patient
    genotype.
  genetic_context:
    functional_impact_category: LOSS_OF_FUNCTION
    variant_origin: GERMLINE
    allele_type: reported sequence and deletion alleles with predicted or asserted loss of function
    description: >-
      Biallelic variants are required, but the allelic configuration varies
      among families. The disease literature assigns loss of function broadly,
      but p.Ter1820Gly remains a predicted rather than experimentally
      demonstrated loss-of-function allele.
  genes:
  - preferred_term: TUBGCP6
    term:
      id: hgnc:18127
      label: TUBGCP6
  cellular_components:
  - preferred_term: gamma-tubulin ring complex
    term:
      id: GO:0000931
      label: gamma-tubulin ring complex
  evidence:
  - reference: PMID:37031378
    reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Autosomal recessive microcephaly and chorioretinopathy-1 (MCCRP1) is a rare
      Mendelian disorder resulting from biallelic loss of function variants in
      Tubulin-Gamma Complex Associated Protein 6 (TUBGCP6, MIM#610053).
    explanation: Supports the disease-level biallelic loss-of-function assignment.
  - reference: PMID:39634241
    reference_title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Compound heterozygous variants were identified in TUBGCP6 including an
      eleven base pair deletion (inherited from father) and 405 base pair large
      deletion (inherited from mother).
    explanation: Documents two deletion alleles in trans in an affected family.
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      This read-through variant is predicted to incorporate 16 extra amino acids
      at the C-terminus of TUBGCP6 and/or may accelerate mRNA degradation via
      non-stop mediated decay.
    explanation: >-
      Supports a predicted function-reducing mechanism for the founding allele
      while making clear that the mechanism was predictive, not experimentally
      demonstrated.
  - reference: PMID:31874114
    reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      TUBGCP6, a core component of the γ-tubulin ring complex (γ-TuRC) that is
      required for the nucleation of centriolar microtubules
    explanation: >-
      Identifies TUBGCP6 as a core γ-TuRC component in the cell-biology study;
      it does not test a patient allele or a developmental disease model.
  downstream:
  - target: Reduced Centrosome-Driven Microtubule Nucleation
    causal_link_type: DIRECT
    description: >-
      Acute loss of TUBGCP6 reduced centrosome-driven microtubule nucleation in
      DLD-1 cells. Application to germline patient alleles is model extrapolation.
    evidence:
    - reference: PMID:31874114
      reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
      supports: SUPPORT
      evidence_source: IN_VITRO
      snippet: >-
        Cells depleted of TUBGCP6 also exhibited mitotic defects similar to those
        observed following loss of WBP11, including reduced centrosome-driven
        microtubule nucleation and mitotic arrest with a monopolar spindle (Fig.
        2, G and H; Fig. 7, E–G; and Videos 5 and 6).
      explanation: >-
        Directly measures reduced nucleation after acute TUBGCP6 depletion in
        DLD-1 cells; it does not test a patient allele.
  - target: Centriole Duplication Failure
    causal_link_type: DIRECT
    description: >-
      Acute endogenous TUBGCP6 degradation caused centriole-duplication failure
      in DLD-1 cells, and a TUBGCP6 transgene rescued that experimental defect.
    evidence:
    - reference: PMID:31874114
      reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
      supports: SUPPORT
      evidence_source: IN_VITRO
      snippet: >-
        Degradation of TUBGCP6 led to a pronounced failure of centriole
        duplication that was similar to that observed in WBP11AID cells (Fig. 7,
        A–C).
      explanation: >-
        Directly demonstrates the cellular consequence of acute TUBGCP6 loss,
        with the caveat that this is not a patient-allele experiment.
- name: Reduced Centrosome-Driven Microtubule Nucleation
  biological_scale: CELLULAR
  description: >-
    Acute degradation of endogenously tagged TUBGCP6 in DLD-1 cells reduced
    centrosome-driven microtubule nucleation. This is a direct cellular assay in
    a colon-cancer cell line; neither neural nor retinal progenitors were tested.
  biological_processes:
  - preferred_term: microtubule nucleation
    term:
      id: GO:0007020
      label: microtubule nucleation
    modifier: DECREASED
  evidence:
  - reference: PMID:31874114
    reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      Cells depleted of TUBGCP6 also exhibited mitotic defects similar to those
      observed following loss of WBP11, including reduced centrosome-driven
      microtubule nucleation and mitotic arrest with a monopolar spindle (Fig. 2,
      G and H; Fig. 7, E–G; and Videos 5 and 6).
    explanation: Directly reports reduced centrosome-driven microtubule nucleation.
  downstream:
  - target: Monopolar-Spindle Mitotic Arrest
    causal_link_type: UNKNOWN
    description: >-
      Reduced nucleation and monopolar-spindle arrest co-occurred after the same
      depletion; the experiment did not isolate nucleation as the sole mediator.
    evidence:
    - reference: PMID:31874114
      reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
      supports: SUPPORT
      evidence_source: IN_VITRO
      snippet: >-
        Cells depleted of TUBGCP6 also exhibited mitotic defects similar to those
        observed following loss of WBP11, including reduced centrosome-driven
        microtubule nucleation and mitotic arrest with a monopolar spindle (Fig.
        2, G and H; Fig. 7, E–G; and Videos 5 and 6).
      explanation: >-
        Shows co-occurrence under one perturbation but does not establish that
        reduced nucleation alone causes the arrest.
- name: Centriole Duplication Failure
  biological_scale: CELLULAR
  description: >-
    Acute degradation of both endogenously tagged TUBGCP6 alleles in DLD-1 cells
    produced a pronounced failure of centriole duplication. Rescue by a TUBGCP6
    transgene supports perturbation specificity, but this remains an acute
    cell-line model rather than a germline patient-allele assay.
  biological_processes:
  - preferred_term: centriole replication
    term:
      id: GO:0007099
      label: centriole replication
    modifier: DECREASED
  evidence:
  - reference: PMID:31874114
    reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      Degradation of TUBGCP6 led to a pronounced failure of centriole
      duplication that was similar to that observed in WBP11AID cells (Fig. 7,
      A–C).
    explanation: Directly reports centriole-duplication failure after TUBGCP6 loss.
  - reference: PMID:31874114
    reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      Expression of a TUBGCP6 transgene fully rescued centriole duplication in
      auxin-treated TUBGCP6AID cells, demonstrating that this transgene was able
      to functionally compensate for the loss of the endogenous protein (Fig.
      S5, F and G).
    explanation: Rescue supports specificity of the acute TUBGCP6-depletion phenotype.
  downstream:
  - target: Monopolar-Spindle Mitotic Arrest
    causal_link_type: UNKNOWN
    description: >-
      Centriole-duplication failure and monopolar-spindle arrest co-occurred after
      TUBGCP6 depletion, but the paper did not isolate their causal ordering.
    evidence:
    - reference: PMID:31874114
      reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
      supports: SUPPORT
      evidence_source: IN_VITRO
      snippet: >-
        First, loss of TUBGCP6, WBP11, and SNW1 share phenotypic similarities,
        including the formation of monopolar spindles, a prolonged mitosis, and
        centriole duplication failure.
      explanation: >-
        Reports both phenotypes after loss of TUBGCP6 but does not resolve the
        ordering between duplication failure and monopolar arrest.
- name: Monopolar-Spindle Mitotic Arrest
  biological_scale: CELLULAR
  description: >-
    TUBGCP6-depleted DLD-1 cells developed mitotic arrest with a monopolar
    spindle and predominantly underwent mitotic slippage at later observation
    times. These are in-vitro cell-division phenotypes.
  biological_processes:
  - preferred_term: mitotic spindle organization
    term:
      id: GO:0007052
      label: mitotic spindle organization
    modifier: DYSREGULATED
  evidence:
  - reference: PMID:31874114
    reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      Cells depleted of TUBGCP6 also exhibited mitotic defects similar to those
      observed following loss of WBP11, including reduced centrosome-driven
      microtubule nucleation and mitotic arrest with a monopolar spindle (Fig. 2,
      G and H; Fig. 7, E–G; and Videos 5 and 6).
    explanation: Directly reports the monopolar-spindle mitotic arrest phenotype.
  downstream:
  - target: Reduced Cell Proliferation
    causal_link_type: DIRECT
    description: The mitotic deficits reduced proliferation in the same cell model.
    evidence:
    - reference: PMID:31874114
      reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
      supports: SUPPORT
      evidence_source: IN_VITRO
      snippet: >-
        Similar to WBP11AID cells, the mitotic deficits dramatically reduced the
        proliferation of cells depleted of TUBGCP6 (Fig. 7 H).
      explanation: Directly links the observed mitotic deficits to reduced proliferation.
- name: Reduced Cell Proliferation
  biological_scale: CELLULAR
  description: >-
    Acute TUBGCP6 depletion dramatically reduced proliferation of DLD-1 cells.
    Reduced developmental progenitor output is a plausible bridge to the brain,
    chorioretinal, and somatic-growth endpoints, but that bridge has not been
    tested in patient-derived, neural, or retinal models.
  biological_processes:
  - preferred_term: cell population proliferation
    term:
      id: GO:0008283
      label: cell population proliferation
    modifier: DECREASED
  evidence:
  - reference: PMID:31874114
    reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      Similar to WBP11AID cells, the mitotic deficits dramatically reduced the
      proliferation of cells depleted of TUBGCP6 (Fig. 7 H).
    explanation: Directly reports reduced proliferation in TUBGCP6-depleted cells.
  downstream:
  - target: Abnormal Cerebral Development
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
    intermediate_mechanisms:
    - Developmental neural-progenitor loss or dysfunction is hypothesized but untested in TUBGCP6 models.
    description: >-
      The cellular model and human cerebral phenotype are consistent with this
      bridge, but no TUBGCP6 neural-development experiment establishes it.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        Magnetic resonance imaging shows diffuse pachygyria (Figure 2, C). The
        cerebral hemispheres are small relative to the cerebellum, which has a
        hypoplastic vermis (Figure 2, D).
      explanation: >-
        Establishes the human cerebral endpoint but not the mechanistic bridge
        from the DLD-1 proliferation assay.
  - target: Abnormal Chorioretinal Development
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
    intermediate_mechanisms:
    - Developmental retinal or choroidal progenitor loss or dysfunction is hypothesized but untested in TUBGCP6 models.
    description: >-
      The cellular model and human chorioretinal phenotype are consistent with
      this bridge, but no TUBGCP6 retinal-development experiment establishes it.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        The retina and choroid are underdeveloped and have focal defects that
        reveal bare sclera.
      explanation: >-
        Establishes the human tissue endpoint but not the mechanistic bridge
        from the DLD-1 proliferation assay.
  - target: Reduced Somatic Growth
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
    intermediate_mechanisms:
    - Developmental growth restriction downstream of impaired proliferation is hypothesized but untested for patient alleles.
    description: >-
      Short stature is reported clinically, but the cellular-to-organism growth
      bridge has not been tested for TUBGCP6 patient variants.
    evidence:
    - reference: PMID:39634241
      reference_title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        We present the first Indian family with an affected child and sibling
        fetus with microcephaly, dysmorphism, and agyria/pachygyria complex on
        brain imaging in both and short stature, intellectual disability, and
        visual impairment in proband.
      explanation: Reports the human growth endpoint without establishing its cellular mechanism.
- name: Abnormal Cerebral Development
  biological_scale: TISSUE
  description: >-
    Human findings include congenital severe microcephaly, diffuse pachygyria,
    small cerebral hemispheres, cerebellar vermis hypoplasia, developmental and
    intellectual impairment, and occasional seizures. Later reports extend the
    imaging spectrum to agyria/pachygyria, ventriculomegaly, and abnormal
    sulcation. These observations define the tissue endpoint rather than proving
    the upstream cellular bridge.
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Magnetic resonance imaging shows diffuse pachygyria (Figure 2, C). The
      cerebral hemispheres are small relative to the cerebellum, which has a
      hypoplastic vermis (Figure 2, D).
    explanation: Directly documents the cerebral malformation pattern in the original cohort.
  - reference: PMID:39634241
    reference_title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We report third trimester microcephaly with ventriculomegaly and abnormal
      sulcation as part of the antenatal presentation for this condition.
    explanation: Extends the prenatal cerebral-imaging spectrum in one family.
  downstream:
  - target: Microcephaly
    causal_link_type: DIRECT
    description: Reduced cerebral growth presents as congenital microcephaly.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        All patients are born with microcephaly, a sloping forehead, diminutive
        anterior fontanelle, and sutural ridging (Figure 2, A).
      explanation: Directly documents congenital microcephaly in the original cohort.
  - target: Global Developmental Delay
    causal_link_type: DIRECT
    description: Developmental delay is part of the reported cerebral phenotype.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        Children walk independently between 14 and 36 months of age and language
        emerges at an appropriate age but remains rudimentary.
      explanation: Documents delayed walking and limited language development.
  - target: Intellectual Disability
    causal_link_type: DIRECT
    description: Intellectual impairment accompanies the congenital brain phenotype.
    evidence:
    - reference: PMID:37031378
      reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        Clinical features of this disorder include microcephaly, cognitive
        impairment, dysmorphic features, and variable ophthalmological anomalies
        including chorioretinopathy.
      explanation: Lists cognitive impairment among the clinical features.
  - target: Pachygyria
    causal_link_type: DIRECT
    description: Pachygyria is a directly imaged cortical malformation.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: Magnetic resonance imaging shows diffuse pachygyria (Figure 2, C).
      explanation: Directly reports diffuse pachygyria on MRI.
  - target: Hypoplasia of the Corpus Callosum
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
    description: >-
      At this tissue-to-phenotype graph scale, reduced callosal area is an
      observed structural manifestation of abnormal cerebral development. This
      does not establish the upstream cellular mechanism or a disease-wide
      frequency.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: |-
        area of the corpus callosum is approximately half that of an age-
        matched control child (2.75 cm 2 versus 5.61 cm 2).
      explanation: >-
        Quantifies reduced corpus-callosum area in one imaged child; the HPO
        hypoplasia mapping is a conservative anatomical interpretation.
  - target: Cerebellar Vermis Hypoplasia
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
    description: >-
      A hypoplastic vermis is a directly imaged structural manifestation at the
      cerebral-development tissue endpoint.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        The cerebral hemispheres are small relative to the cerebellum, which has
        a hypoplastic vermis (Figure 2, D).
      explanation: Directly documents cerebellar vermis hypoplasia on MRI.
  - target: Seizure
    causal_link_type: DIRECT
    description: Seizures occurred in a minority of the original cohort.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        Two of nine patients (22%) have epilepsy: one started having drop attacks
        in late childhood and another developed nocturnal epilepsy as an adult.
      explanation: Provides the exact cohort-specific seizure count and presentations.
- name: Abnormal Chorioretinal Development
  biological_scale: TISSUE
  description: >-
    The original cohort had underdeveloped retina and choroid with focal areas of
    bare sclera, scalloped retina, abnormal peripheral tissue, vitreoretinal
    traction, and risk of retinal detachment. This anatomy is better represented
    by broad abnormal chorioretinal morphology than by assuming a uniform
    progressive dystrophy.
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      The retina and choroid are underdeveloped and have focal defects that
      reveal bare sclera.
    explanation: Directly describes abnormal chorioretinal development.
  downstream:
  - target: Chorioretinopathy
    causal_link_type: DIRECT
    description: Underdeveloped retina and choroid produce the defining ocular morphology.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        The retina and choroid are underdeveloped and have focal defects that
        reveal bare sclera.
      explanation: Directly supports abnormal chorioretinal morphology.
  - target: Visual Impairment
    causal_link_type: DIRECT
    description: The ocular abnormality is accompanied by early visual impairment.
    evidence:
    - reference: PMID:37031378
      reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        Microcephaly can be recognized prenatally and visual impairment becomes
        evident during the first year of life.
      explanation: Directly reports visual impairment and its observed onset.
  - target: Retinal Detachment
    causal_link_type: DIRECT
    description: Vitreoretinal traction creates points at risk for retinal detachment.
    evidence:
    - reference: PMID:22279524
      reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        Condensations of vitreous may attach to the retina in transition regions
        between scalloped and gray tissue, marking points of traction for retinal
        detachment.
      explanation: Directly describes the tractional basis for retinal detachment.
- name: Reduced Somatic Growth
  biological_scale: ORGANISM
  description: >-
    Short stature is reported in TUBGCP6-affected individuals, including the
    proband with compound-heterozygous deletion alleles. The relationship to the
    DLD-1 proliferation phenotype is plausible but untested.
  evidence:
  - reference: PMID:39634241
    reference_title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We present the first Indian family with an affected child and sibling
      fetus with microcephaly, dysmorphism, and agyria/pachygyria complex on brain
      imaging in both and short stature, intellectual disability, and visual
      impairment in proband.
    explanation: Directly reports short stature in the affected proband.
  - reference: PMID:25344692
    reference_title: Mutations in PLK4, encoding a master regulator of centriole biogenesis, cause microcephaly, growth failure and retinopathy.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Here we identify mutations in the genes encoding PLK4 kinase, a master
      regulator of centriole duplication, and its substrate TUBGCP6 in
      individuals with microcephalic primordial dwarfism and additional
      congenital anomalies, including retinopathy, thereby extending the human
      phenotypic spectrum associated with centriole dysfunction.
    explanation: >-
      Supports growth restriction in the combined PLK4/TUBGCP6 ascertainment;
      the source abstract does not separate gene-specific counts.
  downstream:
  - target: Short Stature
    causal_link_type: DIRECT
    description: Reduced somatic growth is clinically expressed as short stature.
    evidence:
    - reference: PMID:39634241
      reference_title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        We present the first Indian family with an affected child and sibling
        fetus with microcephaly, dysmorphism, and agyria/pachygyria complex on
        brain imaging in both and short stature, intellectual disability, and
        visual impairment in proband.
      explanation: Directly reports short stature in the proband.
phenotypes:
- name: Microcephaly
  description: >-
    Congenital microcephaly was severe in the original cohort and has also been
    recognized prenatally in later families.
  phenotype_term:
    preferred_term: Microcephaly
    term:
      id: HP:0000252
      label: Microcephaly
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      All patients are born with microcephaly, a sloping forehead, diminutive
      anterior fontanelle, and sutural ridging (Figure 2, A).
    explanation: Directly documents congenital microcephaly in the original cohort.
- name: Sloping Forehead
  description: >-
    Sloping forehead accompanied congenital microcephaly in the founding cohort.
    It is retained as an unwired clinical phenotype because the source reports
    co-occurrence but does not establish a directional cerebral-development
    mechanism.
  phenotype_term:
    preferred_term: Sloping forehead
    term:
      id: HP:0000340
      label: Sloping forehead
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      All patients are born with microcephaly, a sloping forehead, diminutive
      anterior fontanelle, and sutural ridging (Figure 2, A).
    explanation: Directly reports sloping forehead in the founding cohort.
- name: Chorioretinopathy
  description: >-
    Variable abnormal chorioretinal morphology, including underdevelopment and
    focal defects of the retina and choroid. The broad HPO term is intentional:
    the later disease review describes variable ophthalmological anomalies, and
    the founding cohort's developmental morphology does not establish uniform
    formal dysplasia or progressive dystrophy across all affected individuals.
  phenotype_term:
    preferred_term: Abnormal chorioretinal morphology
    term:
      id: HP:0000532
      label: Abnormal chorioretinal morphology
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      The retina and choroid are underdeveloped and have focal defects that
      reveal bare sclera.
    explanation: Directly describes the chorioretinal morphology.
- name: Visual Impairment
  description: Visual impairment may become evident during the first year of life.
  phenotype_term:
    preferred_term: Visual impairment
    term:
      id: HP:0000505
      label: Visual impairment
  evidence:
  - reference: PMID:37031378
    reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: visual impairment becomes evident during the first year of life
    explanation: Directly reports early visual impairment.
- name: Intellectual Disability
  description: Intellectual or cognitive impairment is part of the reported phenotype.
  phenotype_term:
    preferred_term: Intellectual disability
    term:
      id: HP:0001249
      label: Intellectual disability
  evidence:
  - reference: PMID:39634241
    reference_title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We present the first Indian family with an affected child and sibling fetus
      with microcephaly, dysmorphism, and agyria/pachygyria complex on brain
      imaging in both and short stature, intellectual disability, and visual
      impairment in proband.
    explanation: Directly reports intellectual disability in the affected proband.
- name: Global Developmental Delay
  description: Delayed independent walking and limited language were described in the original cohort.
  phenotype_term:
    preferred_term: Global developmental delay
    term:
      id: HP:0001263
      label: Global developmental delay
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Children walk independently between 14 and 36 months of age and language
      emerges at an appropriate age but remains rudimentary.
    explanation: Documents delayed walking and limited language development.
- name: Pachygyria
  description: Diffuse pachygyria is reported on MRI; a later family had an agyria/pachygyria complex.
  phenotype_term:
    preferred_term: Pachygyria
    term:
      id: HP:0001302
      label: Pachygyria
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: Magnetic resonance imaging shows diffuse pachygyria (Figure 2, C).
    explanation: Directly reports diffuse pachygyria on MRI.
- name: Hypoplasia of the Corpus Callosum
  description: >-
    One imaged affected child had a corpus-callosum surface area approximately
    half that of an age-matched control. The phenotype is recorded without a
    disease-wide frequency, and the HPO hypoplasia mapping is conservative
    because the source reports the quantitative reduction rather than naming it.
  phenotype_term:
    preferred_term: Hypoplasia of the corpus callosum
    term:
      id: HP:0002079
      label: Hypoplasia of the corpus callosum
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: |-
      area of the corpus callosum is approximately half that of an age-
      matched control child (2.75 cm 2 versus 5.61 cm 2).
    explanation: >-
      Supports reduced callosal size in one child; the hypoplasia term is an
      anatomical interpretation rather than source wording.
- name: Cerebellar Vermis Hypoplasia
  description: >-
    A hypoplastic cerebellar vermis accompanied the small cerebral hemispheres
    on MRI. This phenotype assertion is retained separately from the structured
    imaging finding because the schema serves both clinical-phenotype and
    imaging consumers.
  phenotype_term:
    preferred_term: Cerebellar vermis hypoplasia
    term:
      id: HP:0001320
      label: Cerebellar vermis hypoplasia
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      The cerebral hemispheres are small relative to the cerebellum, which has a
      hypoplastic vermis (Figure 2, D).
    explanation: Directly reports cerebellar vermis hypoplasia on MRI.
- name: Short Stature
  description: Short stature is reported in the proband from the deletion-allele family.
  phenotype_term:
    preferred_term: Short stature
    term:
      id: HP:0004322
      label: Short stature
  evidence:
  - reference: PMID:39634241
    reference_title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We present the first Indian family with an affected child and sibling fetus
      with microcephaly, dysmorphism, and agyria/pachygyria complex on brain
      imaging in both and short stature, intellectual disability, and visual
      impairment in proband.
    explanation: Directly reports short stature in the affected proband.
- name: Seizure
  description: >-
    Seizures were reported in two of nine people in the original Mennonite
    cohort; this cohort-specific observation should not be generalized into a
    disease-wide prevalence estimate.
  frequency: 2/9 (22%) in the original Mennonite cohort
  phenotype_term:
    preferred_term: Seizure
    term:
      id: HP:0001250
      label: Seizure
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Two of nine patients (22%) have epilepsy: one started having drop attacks
      in late childhood and another developed nocturnal epilepsy as an adult.
    explanation: Gives the exact cohort-specific count and seizure presentations.
- name: Retinal Detachment
  description: >-
    Vitreoretinal condensations and traction were described at transition zones,
    providing a structural basis for retinal detachment.
  phenotype_term:
    preferred_term: Retinal detachment
    term:
      id: HP:0000541
      label: Retinal detachment
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Condensations of vitreous may attach to the retina in transition regions
      between scalloped and gray tissue, marking points of traction for retinal
      detachment.
    explanation: Directly describes traction associated with retinal detachment.
genetic:
- name: TUBGCP6
  association: Causative
  gene_term:
    preferred_term: TUBGCP6 (tubulin gamma complex associated protein 6)
    term:
      id: hgnc:18127
      label: TUBGCP6
  notes: >-
    TUBGCP6 encodes a gamma-tubulin-complex associated protein, not a tubulin
    isotype. MCCRP1 is kept distinct from TUBGCP4-, TUBGCP2-, TUBG1-, KIF11-,
    and PLK4-related disorders despite mechanistic or phenotypic overlap.
  evidence:
  - reference: PMID:37031378
    reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      biallelic loss of function variants in Tubulin-Gamma Complex Associated
      Protein 6 (TUBGCP6, MIM#610053)
    explanation: Names TUBGCP6 as the biallelic causative gene.
epidemiology:
- name: Molecularly confirmed cases reported before the 2023 series
  description: >-
    The 2023 review stated that seven molecularly confirmed patients from five
    unrelated families had previously been reported. This is a literature case
    count, not a population prevalence estimate.
  evidence:
  - reference: PMID:37031378
    reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      To date, only seven molecularly confirmed patients from five unrelated
      families have been reported.
    explanation: Gives the source-specific pre-existing case and family count.
- name: Cases added by the 2023 series
  description: >-
    The 2023 report added four unrelated patients, including one prenatal
    diagnosis. This report-specific increment is kept separate from the prior
    case count to avoid an inferred pooled denominator.
  evidence:
  - reference: PMID:37031378
    reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We report an additional four unrelated patients with TUBGCP6 variants
      including one prenatal diagnosis and review the clinical phenotypes and
      genotypes of all the known cases.
    explanation: Gives the report-specific increment and prenatal case.
diagnosis:
- name: Ophthalmological examination
  description: >-
    Ophthalmological assessment can characterize the retina, choroid, and
    vitreoretinal interface. The original description documents underdevelopment,
    focal defects, and traction associated with detachment rather than one uniform
    dystrophic pattern.
  diagnosis_term:
    preferred_term: eye examination
    term:
      id: NCIT:C38060
      label: Eye Examination
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      The retina and choroid are underdeveloped and have focal defects that
      reveal bare sclera.
    explanation: Documents the ocular anatomy that ophthalmological evaluation must characterize.
- name: Sequence and structural-variant-sensitive genetic testing
  description: >-
    Confirmation requires two pathogenic TUBGCP6 alleles. Testing should be able
    to detect small sequence variants and deletions or other structural variants;
    genome sequencing identified an 11-base-pair deletion in trans with a
    405-base-pair deletion in one family.
  diagnosis_term:
    preferred_term: genetic testing
    term:
      id: NCIT:C15709
      label: Genetic Testing
  evidence:
  - reference: PMID:39634241
    reference_title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Genome sequencing through the Indian Undiagnosed Disease Program (I-UDP)
      confirmed the diagnosis in both proband and sibling fetus. Compound
      heterozygous variants were identified in TUBGCP6 including an eleven base
      pair deletion (inherited from father) and 405 base pair large deletion
      (inherited from mother).
    explanation: >-
      Directly supports genome sequencing and deletion-sensitive analysis for
      molecular confirmation.
treatments:
- name: Genetic Counseling
  description: >-
    Establishing the biallelic TUBGCP6 diagnosis can inform family reproductive
    planning. The cited source supports that management consequence but does not
    state a numeric recurrence risk, surveillance schedule, or treatment outcome,
    so none is asserted here.
  treatment_term:
    preferred_term: Genetic Counseling
    term:
      id: NCIT:C15240
      label: Genetic Counseling
  evidence:
  - reference: PMID:37031378
    reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      it is important to recognize and diagnose this syndrome in view of its
      impact on patient health management and familial reproductive plans
    explanation: >-
      Supports reproductive-planning implications of molecular recognition;
      it does not provide a counseling protocol or a numeric recurrence figure.
imaging_findings:
- name: Diffuse pachygyria on brain MRI
  modality: MRI
  imaging_finding_term:
    preferred_term: Pachygyria
    term:
      id: HP:0001302
      label: Pachygyria
  located_in:
    preferred_term: brain
    term:
      id: UBERON:0000955
      label: brain
  spatial_extent: DIFFUSE
  diagnostic: false
  description: Diffuse pachygyria was documented by MRI in the original cohort.
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Microcephaly with chorioretinopathy. The phenotype was originally described by Victor McKusick
      ... Magnetic resonance imaging shows diffuse pachygyria (Figure 2, C). ... Microcephaly and
      chorioretinopathy due to a homozygous TUBGCP6 mutation.
    explanation: >-
      Retains the diffuse-pachygyria observation and restores the microcephaly/chorioretinopathy
      context and the figure's explicit TUBGCP6 attribution. Ellipses mark omitted source text in
      order.
- name: Cerebellar vermis hypoplasia on brain MRI
  modality: MRI
  imaging_finding_term:
    preferred_term: Cerebellar vermis hypoplasia
    term:
      id: HP:0001320
      label: Cerebellar vermis hypoplasia
  located_in:
    preferred_term: cerebellar vermis
    term:
      id: UBERON:0004720
      label: cerebellar vermis
  diagnostic: false
  description: A hypoplastic cerebellar vermis accompanied small cerebral hemispheres on MRI.
  evidence:
  - reference: PMID:22279524
    reference_title: Genetic mapping and exome sequencing identify variants associated with five novel diseases.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      The cerebral hemispheres are small relative to the cerebellum, which has a
      hypoplastic vermis (Figure 2, D).
    explanation: Directly reports cerebellar vermis hypoplasia on MRI.
- name: Prenatal ventriculomegaly and abnormal sulcation on fetal imaging
  modality: OTHER
  imaging_finding_term:
    preferred_term: Ventriculomegaly
    term:
      id: HP:0002119
      label: Ventriculomegaly
  located_in:
    preferred_term: brain
    term:
      id: UBERON:0000955
      label: brain
  diagnostic: false
  description: >-
    Ventriculomegaly and abnormal sulcation were reported in the third trimester.
    The cached abstract does not identify the imaging modality, so OTHER is used
    rather than inferring ultrasound or MRI.
  evidence:
  - reference: PMID:39634241
    reference_title: Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We report third trimester microcephaly with ventriculomegaly and abnormal
      sulcation as part of the antenatal presentation for this condition.
    explanation: Directly reports the prenatal findings without specifying modality.
differential_diagnoses:
- name: Congenital toxoplasmosis or cytomegalovirus infection
  description: >-
    Acquired congenital infection can combine microcephaly with chorioretinal
    abnormalities. Infection testing and demonstration of biallelic TUBGCP6
    variants distinguish these acquired conditions from MCCRP1.
  distinguishing_features:
  - MCCRP1 is confirmed by biallelic TUBGCP6 variants.
  evidence:
  - reference: PMID:37031378
    reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      The clinical presentation resembles the findings in some acquired
      conditions such as congenital toxoplasmosis and cytomegalovirus infections;
      thus, it is important to recognize and diagnose this syndrome in view of
      its impact on patient health management and familial reproductive plans.
    explanation: Directly identifies the acquired-infection differential.
- name: KIF11-related microcephaly with chorioretinal dysplasia
  description: >-
    KIF11-related disease overlaps through microcephaly, chorioretinal dysplasia,
    retinal folds or detachment, and a FEVR-like presentation. Heterozygous KIF11
    variants and possible lymphedema distinguish it from recessive TUBGCP6 MCCRP1.
  distinguishing_features:
  - KIF11-related disease is associated with heterozygous KIF11 variants.
  - Lymphedema and FEVR-like peripheral avascularity favor KIF11-related disease.
  evidence:
  - reference: PMID:25124931
    reference_title: Phenotypic overlap between familial exudative vitreoretinopathy and microcephaly, lymphedema, and chorioretinal dysplasia caused by KIF11 mutations.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Retinal detachment with avascularity of the peripheral retina, typically
      associated with familial exudative vitreoretinopathy (FEVR), can result
      from mutations in KIF11, a gene recently identified to cause microcephaly,
      lymphedema, and chorioretinal dysplasia (MLCRD) as well as chorioretinal
      dysplasia, microcephaly, and mental retardation (CDMMR).
    explanation: Defines the overlapping KIF11-associated neuro-ophthalmic phenotype.
  - reference: PMID:25124931
    reference_title: Phenotypic overlap between familial exudative vitreoretinopathy and microcephaly, lymphedema, and chorioretinal dysplasia caused by KIF11 mutations.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Four novel heterozygous KIF11 mutations and 1 previously published mutation
      were identified in probands with FEVR: p.A218Gfs*15, p.E470X, p.R221G,
      c.790-1G>T, and the previously described heterozygous p.R47X. Documentation
      of peripheral avascular areas on intravenous fluorescein angiography was
      possible in 2 probands with fibrovascular proliferation demonstrating
      phenotypic overlap with FEVR.
    explanation: Supports the heterozygous KIF11 and peripheral-avascularity distinctions.
- name: TUBGCP4-related microcephaly and chorioretinopathy
  description: >-
    TUBGCP4-related disease is a distinct autosomal-recessive
    gamma-tubulin-complex disorder with overlapping microcephaly and
    chorioretinopathy. Molecular identification of TUBGCP4 rather than TUBGCP6
    variants distinguishes it.
  distinguishing_features:
  - Causative biallelic variants are in TUBGCP4 rather than TUBGCP6.
  - Patient-fibroblast functional findings reported for TUBGCP4 must not be transferred to TUBGCP6.
  evidence:
  - reference: PMID:25817018
    reference_title: Mutations in TUBGCP4 alter microtubule organization via the γ-tubulin ring complex in autosomal-recessive microcephaly with chorioretinopathy.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We have identified TUBGCP4 variants in individuals with autosomal-recessive
      microcephaly and chorioretinopathy. Whole-exome sequencing performed on one
      family with two affected siblings and independently on another family with
      one affected child revealed compound-heterozygous mutations in TUBGCP4.
    explanation: Directly defines the overlapping but genetically distinct TUBGCP4 disorder.
- name: PLK4-related microcephalic primordial dwarfism
  description: >-
    PLK4-related disease overlaps through severe microcephaly, growth failure,
    retinopathy, and additional congenital anomalies. Molecular identification
    of PLK4 rather than TUBGCP6 variants establishes the distinct diagnosis; PLK4
    cell and zebrafish experiments do not provide TUBGCP6 functional evidence.
  distinguishing_features:
  - Causative variants are in PLK4 rather than TUBGCP6.
  evidence:
  - reference: PMID:25344692
    reference_title: Mutations in PLK4, encoding a master regulator of centriole biogenesis, cause microcephaly, growth failure and retinopathy.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Here we identify mutations in the genes encoding PLK4 kinase, a master
      regulator of centriole duplication, and its substrate TUBGCP6 in
      individuals with microcephalic primordial dwarfism and additional
      congenital anomalies, including retinopathy, thereby extending the human
      phenotypic spectrum associated with centriole dysfunction.
    explanation: Establishes the overlapping PLK4 and TUBGCP6 clinical ascertainment.
discussions:
- discussion_id: gap_tubgcp6_patient_allele_and_developmental_models
  prompt: >-
    Do biallelic patient alleles reproduce the acute TUBGCP6-depletion phenotype
    in neural and retinal developmental systems, and which cellular defect
    drives each organ phenotype?
  kind: KNOWLEDGE_GAP
  status: OPEN
  attaches_to:
  - pathophysiology#Reduced TUBGCP6 Function
  - pathophysiology#Reduced Cell Proliferation
  - pathophysiology#Abnormal Cerebral Development
  - pathophysiology#Abnormal Chorioretinal Development
  rationale: >-
    Acute loss of endogenously tagged TUBGCP6 in DLD-1 cells has a specific,
    rescuable effect on centriole duplication and also reduces nucleation and
    proliferation. The model does not contain a disease allele and is neither
    neural nor retinal. Human reports establish the brain and eye endpoints but
    do not measure the intervening mechanism. Patient-derived cells, cerebral or
    retinal organoids, and allele-specific rescue experiments are needed to test
    the bridge and to distinguish effects of nucleation, centriole duplication,
    mitotic arrest, and other unknown intermediates.
  evidence:
  - reference: PMID:31874114
    reference_title: WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      Expression of a TUBGCP6 transgene fully rescued centriole duplication in
      auxin-treated TUBGCP6AID cells, demonstrating that this transgene was able
      to functionally compensate for the loss of the endogenous protein (Fig.
      S5, F and G).
    explanation: Establishes a specific rescuable cellular phenotype in the acute DLD-1 model.
  - reference: PMID:37031378
    reference_title: "Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Clinical features of this disorder include microcephaly, cognitive
      impairment, dysmorphic features, and variable ophthalmological anomalies
      including chorioretinopathy.
    explanation: Establishes the human endpoints without testing the cellular bridge.
notes: >-
  Reviewed against the original 2012 clinical report, later TUBGCP6 case series,
  the 2024 deletion family, and a direct 2020 TUBGCP6-depletion study. MCCRP1 is
  maintained as the MONDO:0009624 TUBGCP6 disorder and is not collapsed into
  TUBGCP4-, TUBGCP2-, TUBG1-, KIF11-, PLK4-, or Seckel-spectrum diagnoses.

  PMID:31874114 provides direct in-vitro evidence from acute degradation of both
  endogenously tagged TUBGCP6 alleles in DLD-1 cells. It does not test germline
  patient alleles, neural progenitors, retinal cells, or an animal model.
  PMID:25344692 provides patient-level TUBGCP6 overlap in its abstract, but its
  PLK4 cellular and zebrafish experiments are not transferred to TUBGCP6.
  PMID:25817018 is used only to define the TUBGCP4 differential, not as evidence
  for a TUBGCP6 mechanism.

  The cached records for PMID:37031378 and PMID:39634241 expose abstract text for
  snippet validation. PMID:22279524 and PMID:31874114 expose cached full text.
  Genetic counseling is included only to the extent supported by the explicit
  familial-reproductive-planning statement; no numeric recurrence risk is added.
  No disease-specific treatment outcome, clinical trial, animal model, dataset,
  or population prevalence was identified in the source-local review, so none
  is asserted here.
📚

References & Deep Research

References

7
Biallelic variants in TUBGCP6 result in microcephaly and chorioretinopathy 1: Report of four cases and a literature review.
No top-level findings curated for this source.
Two-Compound Heterozygous Deletions Affecting TUBGCP6 in a Patient with Microcephaly and Ocular Abnormalities and in an Unborn Sibling with Abnormal Sulcation.
No top-level findings curated for this source.
Genetic mapping and exome sequencing identify variants associated with five novel diseases.
No top-level findings curated for this source.
Mutations in PLK4, encoding a master regulator of centriole biogenesis, cause microcephaly, growth failure and retinopathy.
No top-level findings curated for this source.
WBP11 is required for splicing the TUBGCP6 pre-mRNA to promote centriole duplication.
No top-level findings curated for this source.
Phenotypic overlap between familial exudative vitreoretinopathy and microcephaly, lymphedema, and chorioretinal dysplasia caused by KIF11 mutations.
No top-level findings curated for this source.
Mutations in TUBGCP4 alter microtubule organization via the γ-tubulin ring complex in autosomal-recessive microcephaly with chorioretinopathy.
No top-level findings curated for this source.