Partial androgen insensitivity syndrome is an X-linked 46,XY difference of sex development caused most often by pathogenic variants in AR, the androgen receptor gene. Residual androgen receptor activity produces partial, variable target-tissue responsiveness to testosterone and dihydrotestosterone, leading to predominantly male or ambiguous external genitalia, hypospadias, cryptorchidism, gynecomastia, abnormal secondary sexual hair development, and impaired fertility.
Ask a research question about Partial androgen insensitivity syndrome. OpenScientist will conduct autonomous deep research using the Disorder Mechanisms Knowledge Base and PubMed literature (typically 10-30 minutes).
Do not include personal health information in your question. Questions and results are cached in your browser's local storage.
name: Partial androgen insensitivity syndrome
creation_date: "2026-05-11T05:50:01Z"
updated_date: "2026-05-11T05:50:01Z"
category: Mendelian
description: >-
Partial androgen insensitivity syndrome is an X-linked 46,XY difference of
sex development caused most often by pathogenic variants in AR, the androgen
receptor gene. Residual androgen receptor activity produces partial, variable
target-tissue responsiveness to testosterone and dihydrotestosterone, leading
to predominantly male or ambiguous external genitalia, hypospadias,
cryptorchidism, gynecomastia, abnormal secondary sexual hair development, and
impaired fertility.
disease_term:
preferred_term: partial androgen insensitivity syndrome
term:
id: MONDO:0010720
label: partial androgen insensitivity syndrome
synonyms:
- PAIS
- Partial androgen resistance syndrome
parents:
- Androgen insensitivity syndrome
- 46,XY disorder of sex development
- Androgen receptor signaling disorder
mappings:
mondo_mappings:
- term:
id: MONDO:0010720
label: partial androgen insensitivity syndrome
mapping_predicate: skos:exactMatch
mapping_source: MONDO
mapping_justification: Primary MONDO identifier for the disease.
inheritance:
- name: X-linked recessive
inheritance_term:
preferred_term: X-linked recessive inheritance
term:
id: HP:0001419
label: X-linked recessive inheritance
description: >-
Partial androgen insensitivity syndrome is inherited in an X-linked
recessive pattern through hemizygous pathogenic variants in AR.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "X-linked recessive"
explanation: Orphanet lists X-linked recessive inheritance for PAIS.
- reference: PMID:32338288
reference_title: Novel compound variants of the AR and MAP3K1 genes are related to the clinical heterogeneity of androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "AIS is inherited in an X-linked recessive manner and is caused by variants in the androgen receptor (AR) gene"
explanation: This AIS heterogeneity paper supports X-linked recessive inheritance due to AR variants.
prevalence:
- population: Worldwide
percentage: Unknown
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "Unknown | Worldwide | Point prevalence"
explanation: Orphanet records the worldwide point prevalence as unknown.
pathophysiology:
- name: AR Germline Pathogenic Variant
description: >-
Hemizygous pathogenic variants in AR disrupt the X-linked androgen receptor,
the nuclear receptor that mediates androgen-dependent transcriptional
programs in reproductive and other androgen-responsive tissues.
genes:
- preferred_term: AR
term:
id: hgnc:644
label: AR
biological_processes:
- preferred_term: androgen receptor signaling pathway
term:
id: GO:0030521
label: androgen receptor signaling pathway
modifier: DECREASED
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "AR | androgen receptor | hgnc:644 | Disease-causing germline mutation(s) in"
explanation: Orphanet records germline AR variants as disease-causing in PAIS.
- reference: PMID:29785970
reference_title: Phenotypic and molecular characteristics of androgen insensitivity syndrome patients.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "A pathogenic mutation of the androgen receptor gene (AR; OMIM# 313700) is the only established molecular cause of the X-linked recessive inherited disease."
explanation: This AIS cohort identifies pathogenic AR mutation as the established molecular cause.
downstream:
- target: Partial Androgen Receptor Dysfunction
causal_link_type: DIRECT
description: >-
AR variants impair receptor expression, ligand binding, DNA binding,
receptor interactions, or downstream transcriptional activation.
evidence:
- reference: PMID:32338288
reference_title: Novel compound variants of the AR and MAP3K1 genes are related to the clinical heterogeneity of androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "There are at least five potential mechanisms by which AR variants reduce or abolish AR function"
explanation: The paper summarizes mechanisms by which AR variants reduce or abolish receptor function.
- name: Partial Androgen Receptor Dysfunction
description: >-
The mutant androgen receptor retains variable residual function, so androgen
signaling is impaired but not completely absent in target tissues.
biological_processes:
- preferred_term: androgen receptor signaling pathway
term:
id: GO:0030521
label: androgen receptor signaling pathway
modifier: DECREASED
evidence:
- reference: PMID:29785970
reference_title: Phenotypic and molecular characteristics of androgen insensitivity syndrome patients.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "This protein functions as a steroid hormone-activated transcription factor"
explanation: The cohort paper describes the androgen receptor's normal transcription-factor function.
- reference: PMID:32338288
reference_title: Novel compound variants of the AR and MAP3K1 genes are related to the clinical heterogeneity of androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Impairment in androgen or DNA binding is the most common mechanism"
explanation: This supports impaired ligand or DNA binding as common mechanisms of receptor dysfunction.
downstream:
- target: Partial Androgen Target-Tissue Resistance
causal_link_type: DIRECT
description: >-
Reduced receptor signaling makes androgen-responsive tissues only
partially responsive to age-appropriate androgen exposure.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "partial responsiveness to age-appropriate levels of androgens."
explanation: Orphanet defines PAIS by partial responsiveness to age-appropriate androgens.
- name: Partial Androgen Target-Tissue Resistance
description: >-
Partial androgen resistance causes variable 46,XY undervirilization while
permitting some androgen-dependent masculinization and pubertal response.
evidence:
- reference: PMID:29785970
reference_title: Phenotypic and molecular characteristics of androgen insensitivity syndrome patients.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "complete or partial resistance to the biological actions of androgens."
explanation: The AIS cohort paper defines AIS as complete or partial resistance to androgen action.
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "abnormal genital development in a 46,XY individual with normal testis development"
explanation: Orphanet links partial androgen responsiveness to abnormal genital development in a 46,XY individual.
downstream:
- target: Variable 46XY Undervirilization
causal_link_type: DIRECT
description: >-
Partial androgen resistance produces a spectrum of hypospadias,
micropenis, bifid or fused labioscrotal structures, and ambiguous
genitalia.
evidence:
- reference: PMID:29785970
reference_title: Phenotypic and molecular characteristics of androgen insensitivity syndrome patients.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "partial androgen insensitivity syndrome (PAIS) with predominantly male or ambiguous external genitalia"
explanation: This directly supports variable external genital undervirilization in PAIS.
- target: Gynecomastia
causal_link_type: DIRECT
description: >-
Partial androgen resistance can alter pubertal sex-steroid balance and
breast development.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000771 | Gynecomastia | Frequent (79-30%)"
explanation: Orphanet records gynecomastia as frequent in PAIS.
- target: Abnormality of Secondary Sexual Hair
causal_link_type: DIRECT
description: >-
Partial androgen resistance can reduce or otherwise alter
androgen-dependent secondary sexual hair.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0009888 | Abnormality of secondary sexual hair | Occasional (29-5%)"
explanation: Orphanet records abnormality of secondary sexual hair as occasional in PAIS.
- target: Impaired Spermatogenesis and Sexual Function
causal_link_type: DIRECT
description: >-
Reduced androgen receptor signaling in testicular somatic cells disrupts
spermatogenesis and contributes to infertility and sexual dysfunction.
evidence:
- reference: PMID:26303086
reference_title: Androgen receptor roles in spermatogenesis and infertility.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Androgens exert their action through AR and its signalling in the testis is"
explanation: This review supports the need for AR signaling in spermatogenesis.
- target: Undescended Testes
causal_link_type: DIRECT
description: >-
Partial androgen resistance is associated with cryptorchidism and abnormal
scrotal development.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0008689 | Bilateral cryptorchidism | Frequent (79-30%)"
explanation: Orphanet records bilateral cryptorchidism as frequent in PAIS.
- name: Variable 46XY Undervirilization
description: >-
Affected individuals may present with predominantly male or ambiguous
external genitalia, including hypospadias, micropenis, perineal meatus,
bifid scrotum, clitoral hypertrophy, fused labia majora, blind vagina, or
urogenital sinus anomaly.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000047 | Hypospadias | Frequent (79-30%)"
explanation: Orphanet records hypospadias as frequent in PAIS.
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000062 | Ambiguous genitalia | Frequent (79-30%)"
explanation: Orphanet records ambiguous genitalia as frequent in PAIS.
- reference: PMID:33363845
reference_title: "Male pseudohermaphroditism: A case study of 46,XY disorder of sexual development using whole-exome sequencing."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "micropenis, penoscrotal hypospadias, perineal meatus, ventral preputial split, and testicular hypoplasia."
explanation: This PAIS case report documents several undervirilization features.
- name: Gynecomastia
description: >-
Pubertal androgen resistance can produce gynecomastia through altered
androgen responsiveness and sex-steroid balance.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000771 | Gynecomastia | Frequent (79-30%)"
explanation: Orphanet records gynecomastia as frequent in PAIS.
- name: Abnormality of Secondary Sexual Hair
description: >-
Pubertal androgen resistance can produce abnormal androgen-dependent
secondary sexual hair.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0009888 | Abnormality of secondary sexual hair | Occasional (29-5%)"
explanation: Orphanet records abnormality of secondary sexual hair as occasional in PAIS.
- name: Impaired Spermatogenesis and Sexual Function
description: >-
Partial AR dysfunction impairs spermatogenesis, frequently causing male
infertility and sexual dysfunction; azoospermia is also reported.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0003251 | Male infertility | Very frequent (99-80%)"
explanation: Orphanet records male infertility as very frequent in PAIS.
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0040307 | Male sexual dysfunction | Very frequent (99-80%)"
explanation: Orphanet records male sexual dysfunction as very frequent in PAIS.
- reference: PMID:26303086
reference_title: Androgen receptor roles in spermatogenesis and infertility.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "milder mutations may be responsible for some cases of male infertility."
explanation: This review links milder AR mutations to male infertility.
- name: Undescended Testes
description: >-
Testicular descent is abnormal in many individuals with PAIS, with bilateral
cryptorchidism recorded as a frequent phenotype.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0008689 | Bilateral cryptorchidism | Frequent (79-30%)"
explanation: Orphanet records bilateral cryptorchidism as frequent in PAIS.
- reference: PMID:29785970
reference_title: Phenotypic and molecular characteristics of androgen insensitivity syndrome patients.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "ambiguous external genitalia, including perineal hypospadias, unilateral cryptorchidism"
explanation: The cohort includes a PAIS patient with cryptorchidism and ambiguous genitalia.
downstream:
- target: Gonadal Germ Cell Neoplasia Risk
causal_link_type: DIRECT
description: >-
Retained undescended gonadal tissue creates a tumor-risk management issue
in AIS and is consistent with Orphanet's germ-cell-neoplasia listing for
PAIS.
evidence:
- reference: PMID:22698698
reference_title: Androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "include gonadectomy to avoid gonad tumours in later"
explanation: The Lancet seminar links AIS gonadectomy decisions to later gonadal tumor prevention.
- name: Gonadal Germ Cell Neoplasia Risk
description: >-
Germ cell neoplasia is an occasional reported complication, particularly
relevant when gonads are retained outside the scrotum.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0100728 | Germ cell neoplasia | Occasional (29-5%)"
explanation: Orphanet records germ cell neoplasia as occasional in PAIS.
phenotypes:
- name: Azoospermia
category: Reproductive
frequency: OCCASIONAL
description: Azoospermia is reported in a minority of affected individuals.
phenotype_term:
preferred_term: Azoospermia
term:
id: HP:0000027
label: Azoospermia
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000027 | Azoospermia | Occasional (29-5%)"
explanation: Orphanet records azoospermia as occasional in PAIS.
- name: Hypospadias
category: Genitourinary
frequency: FREQUENT
description: Hypospadias is frequently reported.
phenotype_term:
preferred_term: Hypospadias
term:
id: HP:0000047
label: Hypospadias
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000047 | Hypospadias | Frequent (79-30%)"
explanation: Orphanet records hypospadias as frequent in PAIS.
- name: Bifid scrotum
category: Genitourinary
frequency: OCCASIONAL
description: Bifid scrotum is reported in a minority of affected individuals.
phenotype_term:
preferred_term: Bifid scrotum
term:
id: HP:0000048
label: Bifid scrotum
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000048 | Bifid scrotum | Occasional (29-5%)"
explanation: Orphanet records bifid scrotum as occasional in PAIS.
- name: Perineal hypospadias
category: Genitourinary
frequency: OCCASIONAL
description: Perineal hypospadias is reported in a minority of affected individuals.
phenotype_term:
preferred_term: Perineal hypospadias
term:
id: HP:0000051
label: Perineal hypospadias
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000051 | Perineal hypospadias | Occasional (29-5%)"
explanation: Orphanet records perineal hypospadias as occasional in PAIS.
- name: Micropenis
category: Genitourinary
frequency: OCCASIONAL
description: Micropenis is reported in a minority of affected individuals.
phenotype_term:
preferred_term: Micropenis
term:
id: HP:0000054
label: Micropenis
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000054 | Micropenis | Occasional (29-5%)"
explanation: Orphanet records micropenis as occasional in PAIS.
- name: Ambiguous genitalia
category: Genitourinary
frequency: FREQUENT
description: Ambiguous genitalia are frequently reported.
phenotype_term:
preferred_term: Ambiguous genitalia
term:
id: HP:0000062
label: Ambiguous genitalia
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000062 | Ambiguous genitalia | Frequent (79-30%)"
explanation: Orphanet records ambiguous genitalia as frequent in PAIS.
- name: Aplasia of the uterus
category: Genitourinary
frequency: VERY_FREQUENT
description: The uterus is usually absent in PAIS, although rare atypical cases with Mullerian remnants are described.
phenotype_term:
preferred_term: Aplasia of the uterus
term:
id: HP:0000151
label: Aplasia of the uterus
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000151 | Aplasia of the uterus | Very frequent (99-80%)"
explanation: Orphanet records uterine aplasia as very frequent in PAIS.
- name: Gynecomastia
category: Endocrine
frequency: FREQUENT
description: Gynecomastia is frequently reported.
phenotype_term:
preferred_term: Gynecomastia
term:
id: HP:0000771
label: Gynecomastia
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000771 | Gynecomastia | Frequent (79-30%)"
explanation: Orphanet records gynecomastia as frequent in PAIS.
- name: Primary amenorrhea
category: Genitourinary
frequency: OCCASIONAL
description: Primary amenorrhea may occur in phenotypically female or predominantly female presentations.
phenotype_term:
preferred_term: Primary amenorrhea
term:
id: HP:0000786
label: Primary amenorrhea
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0000786 | Primary amenorrhea | Occasional (29-5%)"
explanation: Orphanet records primary amenorrhea as occasional in PAIS.
- name: Abnormally high-pitched voice
category: Endocrine
frequency: OCCASIONAL
description: Voice masculinization may be reduced.
phenotype_term:
preferred_term: Abnormally high-pitched voice
term:
id: HP:0001620
label: Abnormally high-pitched voice
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0001620 | Abnormally high-pitched voice | Occasional (29-5%)"
explanation: Orphanet records abnormally high-pitched voice as occasional in PAIS.
- name: Male infertility
category: Reproductive
frequency: VERY_FREQUENT
description: Male infertility is very frequently reported.
phenotype_term:
preferred_term: Male infertility
term:
id: HP:0003251
label: Male infertility
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0003251 | Male infertility | Very frequent (99-80%)"
explanation: Orphanet records male infertility as very frequent in PAIS.
- name: Insulin insensitivity
category: Endocrine
frequency: OCCASIONAL
description: Insulin insensitivity is reported in a minority of affected individuals.
phenotype_term:
preferred_term: Insulin insensitivity
term:
id: HP:0008189
label: Insulin insensitivity
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0008189 | Insulin insensitivity | Occasional (29-5%)"
explanation: Orphanet records insulin insensitivity as occasional in PAIS.
- name: Clitoral hypertrophy
category: Genitourinary
frequency: OCCASIONAL
description: Clitoral hypertrophy is reported in a minority of affected individuals.
phenotype_term:
preferred_term: Clitoral hypertrophy
term:
id: HP:0008665
label: Clitoral hypertrophy
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0008665 | Clitoral hypertrophy | Occasional (29-5%)"
explanation: Orphanet records clitoral hypertrophy as occasional in PAIS.
- name: Bilateral cryptorchidism
category: Genitourinary
frequency: FREQUENT
description: Both testes may remain undescended.
phenotype_term:
preferred_term: Bilateral cryptorchidism
term:
id: HP:0008689
label: Bilateral cryptorchidism
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0008689 | Bilateral cryptorchidism | Frequent (79-30%)"
explanation: Orphanet records bilateral cryptorchidism as frequent in PAIS.
- name: Abnormality of secondary sexual hair
category: Dermatologic
frequency: OCCASIONAL
description: Secondary sexual hair may be reduced or otherwise abnormal.
phenotype_term:
preferred_term: Abnormality of secondary sexual hair
term:
id: HP:0009888
label: Abnormality of secondary sexual hair
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0009888 | Abnormality of secondary sexual hair | Occasional (29-5%)"
explanation: Orphanet records abnormality of secondary sexual hair as occasional in PAIS.
- name: Aplasia of the ovary
category: Genitourinary
frequency: VERY_FREQUENT
description: Ovaries are absent in 46,XY individuals with testis development.
phenotype_term:
preferred_term: Aplasia of the ovary
term:
id: HP:0010463
label: Aplasia of the ovary
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0010463 | Aplasia of the ovary | Very frequent (99-80%)"
explanation: Orphanet records ovarian aplasia as very frequent in PAIS.
- name: Elevated circulating luteinizing hormone level
category: Endocrine
frequency: VERY_FREQUENT
description: Luteinizing hormone levels are often elevated.
phenotype_term:
preferred_term: Elevated circulating luteinizing hormone level
term:
id: HP:0011969
label: Elevated circulating luteinizing hormone level
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0011969 | Elevated circulating luteinizing hormone level | Very frequent (99-80%)"
explanation: Orphanet records elevated LH as very frequent in PAIS.
- name: Abnormal circulating estrogen level
category: Endocrine
frequency: FREQUENT
description: Circulating estrogen levels are frequently abnormal.
phenotype_term:
preferred_term: Abnormal circulating estrogen level
term:
id: HP:0025132
label: Abnormal circulating estrogen level
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0025132 | Abnormal circulating estrogen level | Frequent (79-30%)"
explanation: Orphanet records abnormal circulating estrogen level as frequent in PAIS.
- name: Increased serum estradiol
category: Endocrine
frequency: OCCASIONAL
description: Serum estradiol may be increased.
phenotype_term:
preferred_term: Increased serum estradiol
term:
id: HP:0025134
label: Increased serum estradiol
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0025134 | Increased serum estradiol | Occasional (29-5%)"
explanation: Orphanet records increased serum estradiol as occasional in PAIS.
- name: Fused labia majora
category: Genitourinary
frequency: OCCASIONAL
description: Fused labia majora are reported in a minority of affected individuals.
phenotype_term:
preferred_term: Fused labia majora
term:
id: HP:0025486
label: Fused labia majora
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0025486 | Fused labia majora | Occasional (29-5%)"
explanation: Orphanet records fused labia majora as occasional in PAIS.
- name: Increased serum testosterone level
category: Endocrine
frequency: VERY_FREQUENT
description: Serum testosterone is often increased in relation to the androgen-resistance phenotype.
phenotype_term:
preferred_term: Increased serum testosterone level
term:
id: HP:0030088
label: Increased serum testosterone level
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0030088 | Increased serum testosterone level | Very frequent (99-80%)"
explanation: Orphanet records increased serum testosterone level as very frequent in PAIS.
- name: Increased circulating antimullerian hormone concentration
category: Endocrine
frequency: VERY_FREQUENT
description: Antimullerian hormone is often increased in the 46,XY DSD context.
phenotype_term:
preferred_term: Increased circulating antimullerian hormone concentration
term:
id: HP:0031102
label: Increased circulating antimullerian hormone concentration
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0031102 | Increased antimullerian hormone level | Very frequent (99-80%)"
explanation: Orphanet records increased antimullerian hormone level as very frequent in PAIS.
- name: Male sexual dysfunction
category: Reproductive
frequency: VERY_FREQUENT
description: Male sexual dysfunction is very frequently reported.
phenotype_term:
preferred_term: Male sexual dysfunction
term:
id: HP:0040307
label: Male sexual dysfunction
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0040307 | Male sexual dysfunction | Very frequent (99-80%)"
explanation: Orphanet records male sexual dysfunction as very frequent in PAIS.
- name: Blind vagina
category: Genitourinary
frequency: OCCASIONAL
description: A blind-ending vagina is reported in a minority of affected individuals.
phenotype_term:
preferred_term: Blind vagina
term:
id: HP:0040314
label: Blind vagina
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0040314 | Blind vagina | Occasional (29-5%)"
explanation: Orphanet records blind vagina as occasional in PAIS.
- name: Germ cell neoplasia
category: Neoplastic
frequency: OCCASIONAL
description: Germ cell neoplasia is an occasional reported complication.
phenotype_term:
preferred_term: Germ cell neoplasia
term:
id: HP:0100728
label: Germ cell neoplasia
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0100728 | Germ cell neoplasia | Occasional (29-5%)"
explanation: Orphanet records germ cell neoplasia as occasional in PAIS.
- name: Urogenital sinus anomaly
category: Genitourinary
frequency: OCCASIONAL
description: Urogenital sinus anomaly is reported in a minority of affected individuals.
phenotype_term:
preferred_term: Urogenital sinus anomaly
term:
id: HP:0100779
label: Urogenital sinus anomaly
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0100779 | Urogenital sinus anomaly | Occasional (29-5%)"
explanation: Orphanet records urogenital sinus anomaly as occasional in PAIS.
biochemical:
- name: Testosterone
presence: INCREASED
context: >-
Testosterone production is generally preserved relative to the androgen
resistance phenotype, and Orphanet records increased serum testosterone as
very frequent.
biomarker_term:
preferred_term: testosterone
term:
id: CHEBI:17347
label: testosterone
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0030088 | Increased serum testosterone level | Very frequent (99-80%)"
explanation: Orphanet records increased serum testosterone level as very frequent in PAIS.
- reference: PMID:32338288
reference_title: Novel compound variants of the AR and MAP3K1 genes are related to the clinical heterogeneity of androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "After hCG stimulation, testosterone also displayed a normal rise, excluding testosterone synthesis defects."
explanation: This AIS case supports preserved testosterone synthesis after hCG stimulation.
- name: Estradiol
presence: ABNORMAL
context: Circulating estrogen levels are frequently abnormal, with increased serum estradiol occasionally reported.
biomarker_term:
preferred_term: estradiol
term:
id: CHEBI:23965
label: estradiol
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0025132 | Abnormal circulating estrogen level | Frequent (79-30%)"
explanation: Orphanet records abnormal circulating estrogen level as frequent in PAIS.
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0025134 | Increased serum estradiol | Occasional (29-5%)"
explanation: Orphanet records increased serum estradiol as occasional in PAIS.
- name: Luteinizing hormone
presence: INCREASED
context: Luteinizing hormone is very frequently elevated.
biomarker_term:
preferred_term: Luteinizing hormone
term:
id: CHEBI:81568
label: Luteinizing hormone
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0011969 | Elevated circulating luteinizing hormone level | Very frequent (99-80%)"
explanation: Orphanet records elevated circulating luteinizing hormone level as very frequent in PAIS.
- name: Antimullerian hormone
presence: INCREASED
context: Antimullerian hormone is very frequently increased in PAIS.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0031102 | Increased antimullerian hormone level | Very frequent (99-80%)"
explanation: Orphanet records increased antimullerian hormone level as very frequent in PAIS.
genetic:
- name: AR
association: Causal hemizygous pathogenic variant
relationship_type: CAUSATIVE
variant_origin: GERMLINE
gene_term:
preferred_term: AR
term:
id: hgnc:644
label: AR
notes: >-
PAIS is AR-associated, but molecular yield is lower and genotype-phenotype
correlation is less complete than in CAIS. Somatic mosaicism can also cause
variable AIS phenotypes.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "AR | androgen receptor | hgnc:644 | Disease-causing germline mutation(s) in"
explanation: Orphanet records AR as the PAIS disease gene.
- reference: PMID:30251955
reference_title: "Androgen Insensitivity Syndrome: Clinical Phenotype and Molecular Analysis in a Single Tertiary Center Cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "while in the partial form (PAIS) a mutation in AR was detected in only 13"
explanation: This cohort supports AR pathogenic variants in a subset of clinically suspected PAIS.
- reference: PMID:32202729
reference_title: "[Somatic mutations in the androgen receptor gene as the cause of androgen insensitivity syndrome]."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "mutations in this gene have been described rather rarely."
explanation: This report supports rare somatic AR mutations as a contributor to AIS variability.
- name: MAP3K1
association: Candidate phenotype modifier
relationship_type: MODIFIER
variant_origin: GERMLINE
gene_term:
preferred_term: MAP3K1
term:
id: hgnc:6848
label: MAP3K1
notes: >-
MAP3K1 is not the primary Orphanet-listed disease gene for PAIS, but a
reported AIS case supports a possible modifier role in phenotypic
heterogeneity.
evidence:
- reference: PMID:32338288
reference_title: Novel compound variants of the AR and MAP3K1 genes are related to the clinical heterogeneity of androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The rare heterozygous variant in the MAP3K1 gene might act as a genetic modifier of the phenotype"
explanation: This case study supports MAP3K1 as a candidate modifier of AIS phenotype heterogeneity.
diagnosis:
- name: Clinical 46,XY DSD assessment
description: >-
PAIS is suspected when a 46,XY individual with testes has predominantly male
or ambiguous external genitalia, hypospadias, cryptorchidism, gynecomastia,
or other signs of partial androgen resistance.
diagnosis_term:
preferred_term: clinical assessment
term:
id: MAXO:0000487
label: clinical assessment
results: 46,XY DSD phenotype with partial androgen-resistance features.
evidence:
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "abnormal genital development in a 46,XY individual with normal testis development"
explanation: Orphanet defines PAIS by abnormal genital development in a 46,XY individual with normal testis development.
- reference: PMID:29785970
reference_title: Phenotypic and molecular characteristics of androgen insensitivity syndrome patients.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "partial androgen insensitivity syndrome (PAIS) with predominantly male or ambiguous external genitalia"
explanation: This AIS cohort paper describes the PAIS clinical phenotype.
- name: Karyotyping
description: Karyotyping confirms the 46,XY chromosomal sex context for the DSD presentation.
diagnosis_term:
preferred_term: karyotyping
term:
id: MAXO:0001611
label: karyotyping
results: 46,XY karyotype.
evidence:
- reference: PMID:29785970
reference_title: Phenotypic and molecular characteristics of androgen insensitivity syndrome patients.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "all had a 46, XY karyotype."
explanation: The cohort describes karyotyping as part of AIS clinical characterization.
- name: Hormone measurement and hCG stimulation
description: >-
Hormone testing evaluates testosterone production and gonadotropins,
distinguishing androgen resistance from testosterone biosynthesis defects.
diagnosis_term:
preferred_term: hormone measurement
term:
id: MAXO:0035058
label: hormone measurement
results: Preserved or increased testosterone production with androgen-resistance phenotype.
evidence:
- reference: PMID:33363845
reference_title: "Male pseudohermaphroditism: A case study of 46,XY disorder of sexual development using whole-exome sequencing."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Testosterone levels were undetectable, but showed a response to the human chorionic gonadotrophin (hCG) stimulation"
explanation: This PAIS case supports hormone testing with hCG stimulation in diagnostic workup.
- reference: PMID:32338288
reference_title: Novel compound variants of the AR and MAP3K1 genes are related to the clinical heterogeneity of androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "After hCG stimulation, testosterone also displayed a normal rise, excluding testosterone synthesis defects."
explanation: This supports hCG-stimulated testosterone testing to distinguish AIS from testosterone synthesis defects.
- name: AR molecular genetic testing
description: >-
Sequencing AR and, when indicated, broader DSD gene testing supports
diagnostic confirmation and family counseling, recognizing that clinically
suspected PAIS can remain AR-negative.
diagnosis_term:
preferred_term: genetic testing
term:
id: MAXO:0000127
label: genetic testing
results: Hemizygous pathogenic AR variant or a molecularly unresolved PAIS-compatible DSD.
evidence:
- reference: PMID:29785970
reference_title: Phenotypic and molecular characteristics of androgen insensitivity syndrome patients.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "usefulness of AR gene sequencing to support a diagnosis of AIS and to enable"
explanation: The cohort paper supports AR sequencing as diagnostic evidence for AIS.
- reference: PMID:30251955
reference_title: "Androgen Insensitivity Syndrome: Clinical Phenotype and Molecular Analysis in a Single Tertiary Center Cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "suspected PAIS, the identification of AR mutation occurred significantly less"
explanation: This supports molecular testing while documenting lower AR diagnostic yield in suspected PAIS.
- reference: PMID:33363845
reference_title: "Male pseudohermaphroditism: A case study of 46,XY disorder of sexual development using whole-exome sequencing."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The results of our study demonstrate that WES provides a rapid and effective approach to identify novel mutations in DSD"
explanation: This PAIS case supports broader sequencing when DSD etiology is heterogeneous.
treatments:
- name: Multidisciplinary DSD care and counseling
description: >-
PAIS care is individualized in a multidisciplinary DSD setting, including
endocrine, surgical, genetic, psychosocial, fertility, and disclosure
counseling.
treatment_term:
preferred_term: supportive care
term:
id: MAXO:0000950
label: supportive care
evidence:
- reference: PMID:22698698
reference_title: Androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "multidisciplinary team and include gonadectomy to avoid gonad tumours in later"
explanation: The Lancet seminar supports multidisciplinary management for AIS.
- name: Individualized gonadectomy
description: >-
Gonadectomy is considered when gonadal tumor-risk management, gonadal
position, sex assignment, pubertal goals, fertility goals, and hormone
replacement planning support removal.
treatment_term:
preferred_term: gonadectomy
term:
id: MAXO:0001055
label: gonadectomy
evidence:
- reference: PMID:22698698
reference_title: Androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "include gonadectomy to avoid gonad tumours in later"
explanation: The Lancet seminar supports gonadectomy as part of AIS management to reduce later gonadal tumor risk.
- reference: ORPHA:90797
reference_title: Partial androgen insensitivity syndrome
supports: SUPPORT
evidence_source: OTHER
snippet: "HP:0100728 | Germ cell neoplasia | Occasional (29-5%)"
explanation: Orphanet records germ cell neoplasia as an occasional PAIS complication relevant to gonadal tumor-risk management.
- name: Sex hormone replacement or androgen trial
description: >-
Sex-steroid therapy is individualized by sex assignment, gonadal status, and
residual androgen responsiveness; short-course androgen therapy has been
reported to increase penile and scrotal tissue size in a PAIS case.
treatment_term:
preferred_term: sex hormone modifying agent therapy
term:
id: MAXO:0000282
label: sex hormone modifying agent therapy
therapeutic_agent:
- preferred_term: testosterone
term:
id: CHEBI:17347
label: testosterone
evidence:
- reference: PMID:22698698
reference_title: Androgen insensitivity syndrome.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "appropriate sex-hormone replacement at puberty and beyond"
explanation: The Lancet seminar supports sex-hormone replacement in AIS management.
- reference: PMID:33363845
reference_title: "Male pseudohermaphroditism: A case study of 46,XY disorder of sexual development using whole-exome sequencing."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Omnadren) was prescribed that resulted in an increase in the size of the penis, scrotal skin, and foreskin"
explanation: This PAIS case supports an individualized androgen-therapy trial in a partially responsive phenotype.
clinical_trials: []
datasets: []
notes: >-
PAIS overlaps clinically with other 46,XY DSDs, including testosterone
biosynthesis defects, so diagnosis requires careful integration of phenotype,
karyotype, hormone testing, and molecular results. The Asta deep-research run
surfaced a PAIS PBMC RNA-seq biomarker paper (PMID:34867780); this entry cites
it in the reference list but does not model transcriptomic screening as a
routine diagnostic procedure because the abstract frames the markers as
potential clinical-screening candidates for future investigation.
references:
- reference: ORPHA:90797
title: Partial androgen insensitivity syndrome
tags: []
findings:
- statement: >-
Orphanet structured record supporting PAIS definition, X-linked
inheritance, AR disease-gene association, unknown worldwide prevalence,
exact HPO phenotype rows, MONDO mapping, and OMIM cross-reference.
- reference: PMID:29785970
title: Phenotypic and molecular characteristics of androgen insensitivity syndrome patients.
tags: []
findings:
- statement: >-
AIS cohort/review source supporting AR molecular causality, AR receptor
biology, PAIS external-genital phenotype, hormone profiles, karyotyping,
and AR sequencing utility.
- reference: PMID:30251955
title: "Androgen Insensitivity Syndrome: Clinical Phenotype and Molecular Analysis in a Single Tertiary Center Cohort."
tags: []
findings:
- statement: >-
Tertiary-center AIS cohort documenting lower AR mutation detection in
clinically suspected PAIS and somatic mosaicism among AR-positive AIS
patients.
- reference: PMID:32338288
title: Novel compound variants of the AR and MAP3K1 genes are related to the clinical heterogeneity of androgen insensitivity syndrome.
tags: []
findings:
- statement: >-
AIS heterogeneity source supporting X-linked AR causality, AR dysfunction
mechanisms, preserved testosterone response after hCG stimulation, and a
possible MAP3K1 modifier effect.
- reference: PMID:33363845
title: "Male pseudohermaphroditism: A case study of 46,XY disorder of sexual development using whole-exome sequencing."
tags: []
findings:
- statement: >-
PAIS case report supporting 46,XY DSD presentation, WES-based diagnostic
workup, hCG stimulation testing, and short-course androgen therapy response.
- reference: PMID:26303086
title: Androgen receptor roles in spermatogenesis and infertility.
tags: []
findings:
- statement: >-
Review supporting the role of androgen receptor signaling in
spermatogenesis and male fertility.
- reference: PMID:22698698
title: Androgen insensitivity syndrome.
tags: []
findings:
- statement: >-
Lancet seminar supporting multidisciplinary AIS care, gonadectomy for
gonadal tumor-risk management, and sex-hormone replacement.
- reference: PMID:34867780
title: Identification of Potential Genes in Pathogenesis and Diagnostic Value Analysis of Partial Androgen Insensitivity Syndrome Using Bioinformatics Analysis.
tags: []
findings:
- statement: >-
PAIS PBMC RNA-seq study surfaced by deep research; retained as
investigational biomarker context rather than modeled as routine clinical
diagnosis.
This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.