Osteogenesis imperfecta type IX (OI type IX) is a rare autosomal recessive brittle bone disease caused by biallelic loss-of-function variants in PPIB, the gene encoding cyclophilin B (CyPB), a peptidyl-prolyl cis-trans isomerase (PPIase) of the endoplasmic reticulum. CyPB is the third member of the ER collagen prolyl 3-hydroxylation complex it forms in 1:1:1 proportion with cartilage-associated protein (CRTAP, deficient in OI type VII) and prolyl 3-hydroxylase 1 (P3H1, deficient in OI type VIII); the complex 3-hydroxylates a single proline of type I collagen (alpha1(I)Pro986), has peptidyl-prolyl cis-trans isomerase activity, and acts as a collagen chaperone. The reported phenotype spans perinatally lethal to moderately severe OI with low bone mass, recurrent fractures, growth deficiency, and long-bone bowing/deformity. Mechanistically, OI type IX is distinctive among the recessive 3-hydroxylation-complex OI types: CyPB stability is independent of CRTAP/P3H1, and the biochemical consequences of its loss are heterogeneous — some severe cases show reduced alpha1(I)Pro986 3-hydroxylation with collagen overmodification, whereas other (moderate) cases retain normal 3-hydroxylation and normal helical modification. Rhizomelia, a hallmark of types VII/VIII, is variable and severity-dependent in type IX — typically absent in the moderate cases, while a rhizomelic trend is reported in severe/lethal cases. Together with the heterogeneous biochemistry, the dominant lesion is loss of the CyPB folding/isomerase and chain-association function rather than loss of the 3-hydroxylation modification per se, and that CyPB is not the unique rate-limiting PPIase for collagen folding in vivo.
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name: Osteogenesis Imperfecta Type IX
creation_date: "2026-06-30T00:00:00Z"
category: Mendelian
disease_term:
preferred_term: Osteogenesis imperfecta type 9
term:
id: MONDO:0009805
label: osteogenesis imperfecta type 9
description: >-
Osteogenesis imperfecta type IX (OI type IX) is a rare autosomal recessive
brittle bone disease caused by biallelic loss-of-function variants in PPIB,
the gene encoding cyclophilin B (CyPB), a peptidyl-prolyl cis-trans isomerase
(PPIase) of the endoplasmic reticulum. CyPB is the third member of the ER
collagen prolyl 3-hydroxylation complex it forms in 1:1:1 proportion with
cartilage-associated protein (CRTAP, deficient in OI type VII) and prolyl
3-hydroxylase 1 (P3H1, deficient in OI type VIII); the complex 3-hydroxylates
a single proline of type I collagen (alpha1(I)Pro986), has peptidyl-prolyl
cis-trans isomerase activity, and acts as a collagen chaperone. The reported
phenotype spans perinatally lethal to moderately severe OI with low bone mass,
recurrent fractures, growth deficiency, and long-bone bowing/deformity.
Mechanistically, OI type IX is distinctive among the recessive
3-hydroxylation-complex OI types: CyPB stability is independent of CRTAP/P3H1,
and the biochemical consequences of its loss are heterogeneous — some severe
cases show reduced alpha1(I)Pro986 3-hydroxylation with collagen
overmodification, whereas other (moderate) cases retain normal 3-hydroxylation
and normal helical modification. Rhizomelia, a hallmark of types VII/VIII, is
variable and severity-dependent in type IX — typically absent in the moderate
cases, while a rhizomelic trend is reported in severe/lethal cases. Together
with the heterogeneous biochemistry, the dominant
lesion is loss of the CyPB folding/isomerase and chain-association function
rather than loss of the 3-hydroxylation modification per se, and that CyPB is
not the unique rate-limiting PPIase for collagen folding in vivo.
parents:
- Osteogenesis imperfecta
inheritance:
- name: Autosomal Recessive
description: >-
Autosomal recessive inheritance from biallelic loss-of-function PPIB
variants; heterozygous carriers are clinically unaffected.
inheritance_term:
preferred_term: Autosomal recessive inheritance
term:
id: HP:0000007
label: Autosomal recessive inheritance
evidence:
- reference: PMID:19781681
reference_title: "PPIB mutations cause severe osteogenesis imperfecta."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
To our knowledge we present the first two families with recessive OI
caused by PPIB gene mutations.
explanation: >-
Establishes the autosomal recessive inheritance of OI type IX from
biallelic PPIB mutations.
- reference: PMID:28242392
reference_title: "Two novel mutations in the PPIB gene cause a rare pedigree of osteogenesis imperfecta type IX."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We report a rare pedigree with an autosomal recessive osteogenesis
imperfecta type IX (OI-IX) caused by two novel PPIB mutations
explanation: >-
Independent pedigree confirming autosomal recessive OI type IX from
biallelic PPIB mutations.
prevalence:
- population: General (worldwide); Chinese population estimate
notes: >-
OI type IX is very rare, with only a small number of families reported
worldwide. A founder analysis in the Chinese population estimated the
incidence at approximately 1 in 1,000,000.
evidence:
- reference: PMID:34659339
reference_title: "A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
the conserved estimation of OI type IX incidence to be 1/1,000,000 in
Chinese population
explanation: >-
Provides a population-level incidence estimate for OI type IX in the
Chinese population.
pathophysiology:
- name: PPIB Loss Eliminates Cyclophilin B from the ER Collagen Prolyl 3-Hydroxylation Complex
description: >-
PPIB encodes cyclophilin B (CyPB), a peptidyl-prolyl cis-trans isomerase
that, with cartilage-associated protein (CRTAP) and prolyl 3-hydroxylase 1
(P3H1), forms the 1:1:1 endoplasmic-reticulum complex that 3-hydroxylates
alpha1(I)Pro986 of type I collagen, isomerizes prolyl peptide bonds, and
chaperones collagen folding. Biallelic loss-of-function PPIB variants
eliminate CyPB. Unlike CRTAP and P3H1 (which mutually stabilize each other),
CyPB stability is independent of the other two subunits, although PPIB-null
cells show moderately reduced CRTAP and P3H1 levels. The same complex
underlies the closely related recessive OI types VII (CRTAP) and VIII
(P3H1).
cell_types:
- preferred_term: osteoblast
term:
id: CL:0000062
label: osteoblast
- preferred_term: fibroblast
term:
id: CL:0000057
label: fibroblast
biological_processes:
- preferred_term: protein peptidyl-prolyl isomerization
term:
id: GO:0000413
label: protein peptidyl-prolyl isomerization
modifier: DECREASED
evidence:
- reference: PMID:19781681
reference_title: "PPIB mutations cause severe osteogenesis imperfecta."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
CRTAP, P3H1, and cyclophilin B (CyPB) form an intracellular
collagen-modifying complex that 3-hydroxylates proline at position 986
(P986) in the alpha1 chains of collagen type I.
explanation: >-
Defines the CRTAP-P3H1-CyPB complex and its substrate; CyPB is the subunit
lost in OI type IX.
- reference: PMID:25007323
reference_title: "Osteogenesis imperfecta due to mutations in non-collagenous genes: lessons in the biology of bone formation."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
CyPB is ubiquitously expressed and its stability is independent of
CRTAP/P3H1. PPIB-null cells, however, have moderately reduced CRTAP and
P3H1 protein levels, suggesting CyPB provides some support to the complex
explanation: >-
Documents that CyPB stability is independent of CRTAP/P3H1 (distinguishing
type IX from types VII/VIII) while still partially supporting the complex.
downstream:
- target: Impaired Procollagen Chain Association and Collagen Folding
description: >-
Loss of the CyPB isomerase/chaperone slows procollagen chain association
and triple-helix folding.
- name: Impaired Procollagen Chain Association and Collagen Folding
description: >-
CyPB has been considered the major PPIase catalyzing the rate-limiting
cis-trans isomerization step of collagen triple-helix folding, but its loss
also impairs folding of the C-terminal propeptide and proalpha chain
association into trimers. In severely affected PPIB-deficient cells,
proalpha1(I) chains assemble slowly into trimers and abnormal procollagen
accumulates in the rough ER, binding protein disulfide isomerase (PDI) and
prolyl 4-hydroxylase 1 (P4H1), with collagen overmodification. The
biochemical consequences are heterogeneous across patients, however: some
cases retain normal alpha1(I)Pro986 3-hydroxylation and normal helical
modification, indicating that another PPIase can partly substitute for CyPB
and that the primary lesion is loss of CyPB folding/chaperone function rather
than loss of 3-hydroxylation.
cell_types:
- preferred_term: fibroblast
term:
id: CL:0000057
label: fibroblast
- preferred_term: osteoblast
term:
id: CL:0000062
label: osteoblast
biological_processes:
- preferred_term: protein folding
term:
id: GO:0006457
label: protein folding
modifier: ABNORMAL
- preferred_term: collagen biosynthetic process
term:
id: GO:0032964
label: collagen biosynthetic process
modifier: ABNORMAL
evidence:
- reference: PMID:21282188
reference_title: "Mutations in PPIB (cyclophilin B) delay type I procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Proα1(I) chains are slow to assemble into trimers, and abnormal
procollagen molecules concentrate in the RER, and bind to protein
disulfide isomerase (PDI) and prolyl 4-hydroxylase 1 (P4H1).
explanation: >-
Documents delayed procollagen chain assembly and ER accumulation in
PPIB-deficient patient fibroblasts, implicating CyPB in chain association
and folding.
- reference: PMID:21282188
reference_title: "Mutations in PPIB (cyclophilin B) delay type I procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
These findings suggest that prolyl cis-trans isomerase may be required to
effectively fold the proline-rich regions of the C-terminal propeptide to
allow proα chain association
explanation: >-
Identifies a role for CyPB beyond helix isomerization — in C-propeptide
folding required for chain association.
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: >-
The proband's collagen had normal collagen folding and normal prolyl
3-hydroxylation, suggesting that CyPB is not the exclusive
peptidyl-prolyl cis-trans isomerase that catalyzes the rate-limiting step
in collagen folding, as is currently thought.
explanation: >-
Documents the contrasting biochemical phenotype (normal folding and
3-hydroxylation) in a moderate CyPB-deficient case, showing the
consequences of CyPB loss are heterogeneous.
downstream:
- target: Defective Bone Matrix, Reduced Bone Mass, and Skeletal Fragility
description: >-
Abnormal collagen folding, modification, and crosslinking yield a
defective bone matrix with reduced bone mass and mechanical strength.
- name: Defective Bone Matrix, Reduced Bone Mass, and Skeletal Fragility
description: >-
Loss of CyPB alters collagen lysyl hydroxylation, glycosylation, and
crosslinking and impairs collagen deposition and fibril structure, producing
a defective bone extracellular matrix with reduced bone mass and mechanical
strength. Clinically this manifests as low bone mineral density, recurrent
fractures, growth deficiency, and long-bone bowing/deformity, ranging from
perinatally lethal to moderately severe disease. A cyclophilin B knockout
(Ppib-/-) mouse recapitulates the OI phenotype.
cell_types:
- preferred_term: osteoblast
term:
id: CL:0000062
label: osteoblast
- preferred_term: chondrocyte
term:
id: CL:0000138
label: chondrocyte
biological_processes:
- preferred_term: bone mineralization
term:
id: GO:0030282
label: bone mineralization
modifier: DECREASED
- preferred_term: ossification
term:
id: GO:0001503
label: ossification
modifier: ABNORMAL
evidence:
- reference: PMID:24968150
reference_title: "Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
Knock-out (KO) mice are small, with reduced femoral areal bone mineral
density (aBMD), bone volume per total volume (BV/TV) and mechanical
properties, as well as increased femoral brittleness.
explanation: >-
The Ppib-/- mouse recapitulates the reduced bone mass, impaired mechanics,
and brittleness of OI type IX.
- reference: PMID:24968150
reference_title: "Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
The altered crosslink pattern was associated with decreased collagen
deposition into matrix in culture, altered fibril structure in tissue, and
reduced bone strength.
explanation: >-
Links the CyPB-dependent collagen crosslinking/modification defect to a
defective bone matrix and reduced bone strength.
genetic:
- name: PPIB (Cyclophilin B) Loss-of-Function Mutations
association: Causative
gene_term:
preferred_term: PPIB (peptidylprolyl isomerase B; cyclophilin B)
term:
id: hgnc:9255
label: PPIB
notes: >-
Biallelic loss-of-function variants in PPIB on chromosome 15q22.31 cause OI
type IX. Reported alleles include start-codon (c.2T>G), nonsense, frameshift,
splice-site, and missense variants that abolish or downregulate cyclophilin
B. OI type IX is rare, with only a small number of families reported
worldwide.
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
They had a homozygous start-codon mutation in the peptidyl-prolyl
isomerase B gene (PPIB), which results in a lack of cyclophilin B (CyPB),
the third component of the complex.
explanation: >-
Documents a homozygous PPIB start-codon mutation eliminating CyPB as the
cause of OI type IX.
- reference: PMID:28242392
reference_title: "Two novel mutations in the PPIB gene cause a rare pedigree of osteogenesis imperfecta type IX."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Two novel heterozygous PPIB mutations (father, c.25A>G; mother, c.509G>A)
were identified in relation to osteogenesis imperfecta type IX.
explanation: >-
Reports additional pathogenic PPIB alleles segregating in a recessive OI
type IX pedigree.
- reference: PMID:34659339
reference_title: "A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We identified a homozygous missense variant c.509G > A/p.G170D in PPIB in
an affected fetus. This variant is a Chinese-specific allele and can now be
classified as pathogenic.
explanation: >-
Documents a recurrent Chinese-specific founder PPIB missense allele
(c.509G>A/p.G170D) causing OI type IX.
phenotypes:
- name: Recurrent Fractures
description: >-
Bone fragility with multiple long-bone fractures, frequently beginning in
infancy and recurring, often requiring orthopedic intervention.
phenotype_term:
preferred_term: Recurrent fractures
term:
id: HP:0002757
label: Recurrent fractures
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Patients who lack CyPB, a condition that we propose to designate as type
IX osteogenesis imperfecta, have low bone mass and multiple long-bone
fractures, requiring osteotomy and placement of intramedullary rods, but
attain ambulation.
explanation: >-
Documents multiple long-bone fractures as a defining clinical feature of
OI type IX.
- name: Reduced Bone Mineral Density
description: >-
Low bone mass with reduced bone mineral density; DXA Z-scores are reduced,
though typically less severely than in OI types VII and VIII.
phenotype_term:
preferred_term: Reduced bone mineral density
term:
id: HP:0004349
label: Reduced bone mineral density
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Patients who lack CyPB, a condition that we propose to designate as type
IX osteogenesis imperfecta, have low bone mass and multiple long-bone
fractures, requiring osteotomy and placement of intramedullary rods, but
attain ambulation.
explanation: >-
Documents low bone mass (reduced bone mineral density) in OI type IX.
- name: Growth Deficiency
description: >-
Growth deficiency ranging from moderate axial growth deficiency in milder
cases to severe growth failure in severe/lethal cases. Notably, the extreme
growth failure and rhizomelia characteristic of types VII/VIII are typically
absent in moderate CyPB-deficient cases.
phenotype_term:
preferred_term: Growth delay
term:
id: HP:0001510
label: Growth delay
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Although they had moderate axial growth deficiency, their hand length and
segmental proportions were appropriate for their age.
explanation: >-
Documents moderate axial growth deficiency in CyPB-deficient OI type IX,
without the rhizomelia/extreme growth failure of types VII/VIII.
- name: Bowing of the Long Bones
description: >-
Bowing and deformity of the long bones (e.g., femora and tibiae) with
undertubulation, reflecting the fragile, deformable bone matrix.
phenotype_term:
preferred_term: Bowing of the long bones
term:
id: HP:0006487
label: Bowing of the long bones
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Skeletal radiographs obtained when she was a newborn revealed osteoporotic
long bones, with undertubulation and bowing of the femora and tibiae
explanation: >-
Documents long-bone bowing and undertubulation in an OI type IX patient.
- name: Rhizomelia
description: >-
Rhizomelic (proximal) limb shortening is variable and severity-dependent in
OI type IX: typically absent in moderate cases but reported, sometimes
prominently, in severe/lethal cases (in contrast to its consistent presence
in types VII/VIII).
phenotype_term:
preferred_term: Rhizomelia
term:
id: HP:0008905
label: Rhizomelia
evidence:
- reference: PMID:27625864
reference_title: "Osteogenesis imperfecta caused by PPIB mutation with severe phenotype and congenital hearing loss."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Long bones were shortened with significant rhizomelia.
explanation: >-
Documents significant rhizomelia in a severe, molecularly confirmed OI
type IX patient, supporting rhizomelia as a feature of severe cases.
- name: Vertebral Compression Fracture
description: >-
Vertebral body compression develops in OI type IX, reflecting the fragile,
low-density bone of the axial skeleton; anterior vertebral compression has
been documented in early childhood.
phenotype_term:
preferred_term: Vertebral compression fracture
term:
id: HP:0002953
label: Vertebral compression fracture
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
the vertebral bodies of T11 through L2 showed substantial anterior
compression
explanation: >-
Documents substantial anterior vertebral compression in an OI type IX
patient in early childhood.
- name: Sensorineural Hearing Impairment
description: >-
Sensorineural hearing loss has been reported in OI type IX, including
congenital bilateral involvement in a severe case, although whether it is a
consistent feature or an incidental finding remains uncertain given the small
number of reported patients.
phenotype_term:
preferred_term: Sensorineural hearing impairment
term:
id: HP:0000407
label: Sensorineural hearing impairment
evidence:
- reference: PMID:27625864
reference_title: "Osteogenesis imperfecta caused by PPIB mutation with severe phenotype and congenital hearing loss."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: >-
She also had significant bilateral sensorineural hearing loss.
explanation: >-
Documents bilateral sensorineural hearing loss in a molecularly confirmed
OI type IX patient; the report notes hearing loss may be an inconsistent
feature.
- name: Joint Hypermobility
description: >-
Generalized ligamentous laxity (joint hypermobility) has been documented in
molecularly confirmed OI type IX, present in both affected siblings of the
founding CyPB-deficient cohort. It is typically mild-to-moderate and reflects
the connective-tissue involvement of the disorder.
phenotype_term:
preferred_term: Joint hypermobility
term:
id: HP:0001382
label: Joint hypermobility
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
She had generalized, moderate ligamentous laxity, triangular facies with a
high-bossed forehead, and proptosis.
explanation: >-
Documents generalized ligamentous laxity (joint hypermobility) in a
molecularly confirmed OI type IX patient; the affected sibling likewise had
generalized, moderate ligamentous laxity.
- name: Respiratory Insufficiency
description: >-
Respiratory compromise is a major clinical feature of severe/lethal OI type
IX, driven by rib fractures, a narrow thorax, and pulmonary infection, and is
the leading cause of death in the most severely affected patients.
phenotype_term:
preferred_term: Respiratory insufficiency
term:
id: HP:0002093
label: Respiratory insufficiency
severity: SEVERE
evidence:
- reference: PMID:27625864
reference_title: "Osteogenesis imperfecta caused by PPIB mutation with severe phenotype and congenital hearing loss."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
She had significant respiratory disease at birth, and required oxygen
throughout her life.
explanation: >-
Documents oxygen-dependent respiratory disease from birth in a severe,
molecularly confirmed OI type IX patient who died of recurrent pneumonia in
infancy.
- name: Triangular Face
description: >-
A characteristic craniofacial gestalt with triangular facies, a high-bossed
(prominent) forehead, and proptosis has been documented in molecularly
confirmed OI type IX.
phenotype_term:
preferred_term: Triangular face
term:
id: HP:0000325
label: Triangular face
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
triangular facies with a high-bossed forehead, and proptosis
explanation: >-
Documents the triangular facial gestalt (with frontal bossing and
proptosis) in a molecularly confirmed OI type IX patient.
- name: Motor Delay
description: >-
Gross motor development is moderately delayed in OI type IX, reflecting both
the burden of recurrent fractures/deformity and coexisting low muscle tone and
weakness; affected children nonetheless attain ambulation.
phenotype_term:
preferred_term: Motor delay
term:
id: HP:0001270
label: Motor delay
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Gross motor development was moderately delayed, owing to low muscle tone and
weakness
explanation: >-
Documents moderately delayed gross motor development in molecularly
confirmed OI type IX siblings.
- name: Hypotonia
description: >-
Low muscle tone and weakness accompany OI type IX and contribute to the
delayed gross motor development observed in affected children.
phenotype_term:
preferred_term: Muscular hypotonia
term:
id: HP:0001252
label: Hypotonia
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Gross motor development was moderately delayed, owing to low muscle tone and
weakness
explanation: >-
Documents low muscle tone (hypotonia) and weakness in molecularly confirmed
OI type IX siblings.
diagnosis:
- name: Clinical, Biochemical, and Molecular Diagnosis
description: >-
OI type IX is suspected in an infant or child with recessive OI, low bone
mass, and recurrent fractures, particularly when COL1A1/COL1A2, CRTAP, and
LEPRE1 (P3H1) testing is negative. Biochemical collagen analysis of cultured
fibroblasts is variable — it may show delayed collagen folding with
overmodification in severe cases or near-normal folding and 3-hydroxylation
in moderate cases — so diagnosis rests on identifying biallelic PPIB variants
by gene-panel or exome sequencing, distinguishing it from the closely similar
CRTAP (type VII) and P3H1 (type VIII) forms. Notably, molecularly confirmed
cases characteristically have white sclerae and normal dentition — that is,
the blue sclerae and dentinogenesis imperfecta common in type I
collagen-related OI are typically absent — a feature CyPB-deficient OI shares
with the CRTAP/P3H1 recessive forms.
diagnosis_term:
preferred_term: molecular genetic testing
term:
id: MAXO:0000533
label: molecular genetic testing
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
They had a homozygous start-codon mutation in the peptidyl-prolyl
isomerase B gene (PPIB), which results in a lack of cyclophilin B (CyPB),
the third component of the complex.
explanation: >-
Molecular identification of biallelic PPIB variants establishes the
diagnosis of OI type IX.
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Both siblings had white sclerae and normal dentition, which are also found
in patients with P3H1 or CRTAP deficiency.
explanation: >-
Documents that confirmed OI type IX cases characteristically have white
sclerae and normal dentition (blue sclerae and dentinogenesis imperfecta
absent), a distinguishing feature shared with the CRTAP/P3H1 recessive
forms.
treatments:
- name: Bisphosphonate Therapy
description: >-
Intravenous bisphosphonates (e.g., pamidronate, zoledronic acid) are the
pharmacological mainstay of severe OI management, increasing bone mineral
density and reducing fracture frequency. They are antiresorptive and do not
correct the underlying collagen defect.
treatment_term:
preferred_term: Bisphosphonate Therapy
term:
id: NCIT:C198585
label: Bisphosphonate Therapy
evidence:
- reference: PMID:20301472
reference_title: "COL1A1- and COL1A2-Related Osteogenesis Imperfecta."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Bisphosphonates continue to be used most extensively in those with
vertebral fractures, frequent long bone fractures, or more severe OI.
explanation: >-
GeneReviews documents bisphosphonates as the mainstay pharmacotherapy for
OI with frequent fractures or severe disease, the management category that
applies to OI type IX.
- name: Orthopedic Surgery and Intramedullary Rodding
description: >-
Intramedullary (telescoping) rod fixation and corrective osteotomy stabilize
fracture-prone, deformed long bones; OI type IX patients commonly require
osteotomy and rodding yet attain ambulation.
treatment_term:
preferred_term: surgical procedure
term:
id: MAXO:0000004
label: surgical procedure
evidence:
- reference: PMID:20089953
reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Patients who lack CyPB, a condition that we propose to designate as type
IX osteogenesis imperfecta, have low bone mass and multiple long-bone
fractures, requiring osteotomy and placement of intramedullary rods, but
attain ambulation.
explanation: >-
Documents osteotomy and intramedullary rodding as standard orthopedic
management in OI type IX.
- name: Physical Therapy and Rehabilitation
description: >-
Physiotherapy maintains mobility and muscle strength and reduces fracture
risk; fractures are managed with brief immobilization and early
rehabilitation, with mobility aids and orthotics as needed.
treatment_term:
preferred_term: physical therapy
term:
id: MAXO:0000011
label: physical therapy
evidence:
- reference: PMID:20301472
reference_title: "COL1A1- and COL1A2-Related Osteogenesis Imperfecta."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Fractures are treated with as short a period of immobility as is
practical, small and lightweight casts, and physical therapy as soon as
casts are removed
explanation: >-
GeneReviews documents early physical therapy and brief immobilization as
part of standard OI fracture rehabilitation.
discussions:
- discussion_id: disc_oi9_cypb_rate_limiting_ppiase
prompt: >-
Is cyclophilin B the unique rate-limiting peptidyl-prolyl cis-trans
isomerase for type I collagen folding in vivo, and why are the biochemical
consequences of its loss (3-hydroxylation, helical overmodification, folding
rate) so heterogeneous across PPIB-deficient patients?
kind: KNOWLEDGE_GAP
status: OPEN
attaches_to:
- pathophysiology#Impaired Procollagen Chain Association and Collagen Folding
rationale: >-
CyPB was long considered the unique PPIase catalyzing the rate-limiting step
of collagen folding, but human PPIB-null cases are biochemically
discordant: lethal cases show reduced alpha1(I)Pro986 3-hydroxylation with
overmodification, while moderate cases retain normal 3-hydroxylation and
helical modification. A Ppib-/- mouse shows slower folding (consistent with
a rate-limiting role) yet cyclosporine A causes further delay, implying an
additional collagen PPIase. The true rate-limiting determinant and the basis
of the genotype-biochemistry-phenotype heterogeneity remain unresolved.
evidence:
- reference: PMID:25007323
reference_title: "Osteogenesis imperfecta due to mutations in non-collagenous genes: lessons in the biology of bone formation."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Two moderately severe cases have normal α1(I) Pro986 3-hydroxylation,
suggesting that the CRTAP/P3H1 complex can function in the total absence of
CyPB.
explanation: >-
Documents the biochemical heterogeneity (normal 3-hydroxylation despite
absent CyPB) that motivates this knowledge gap.
- reference: PMID:24968150
reference_title: "Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
Collagen folds more slowly in the absence of CyPB, supporting its
rate-limiting role in folding. However, treatment of KO cells with
cyclosporine A causes further delay in folding, indicating the potential
existence of another collagen PPIase.
explanation: >-
Model-organism evidence that CyPB contributes to but is not the sole
rate-limiting PPIase for collagen folding, supporting the open question.
posed_date: "2026-06-30T00:00:00Z"
datasets: []
references:
- reference: PMID:20301472
title: "COL1A1- and COL1A2-Related Osteogenesis Imperfecta."
tags:
- GeneReviews
- reference: PMID:19781681
title: "PPIB mutations cause severe osteogenesis imperfecta."
- reference: PMID:20089953
title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
- reference: PMID:21282188
title: "Mutations in PPIB (cyclophilin B) delay type I procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes."
- reference: PMID:28242392
title: "Two novel mutations in the PPIB gene cause a rare pedigree of osteogenesis imperfecta type IX."
- reference: PMID:24968150
title: "Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta."
- reference: PMID:25007323
title: "Osteogenesis imperfecta due to mutations in non-collagenous genes: lessons in the biology of bone formation."
Osteogenesis Imperfecta Type IX (OI9; OI type 9) is a rare, autosomal recessive form of brittle bone disease caused by loss-of-function variants in the PPIB gene (peptidylprolyl isomerase B), which encodes cyclophilin B (CyPB), an endoplasmic reticulum–resident peptidyl-prolyl cis-trans isomerase. OI type IX was formally delineated as a molecular subtype when Van Dijk et al. (2009) demonstrated that homozygous null mutations in PPIB cause severe-to-lethal bone fragility (PMID: 19781681). It is distinguished from other recessive OI types affecting the prolyl 3-hydroxylation complex (types VII and VIII, caused by CRTAP and LEPRE1/P3H1 mutations, respectively) primarily by the absence of rhizomelia (proximal limb shortening) and by a relatively broader phenotypic spectrum ranging from perinatal lethality to moderate deforming disease.
| Resource | Identifier |
|---|---|
| OMIM | #259440 |
| Orphanet | ORPHA:216820 |
| MONDO | MONDO:0012978 |
| ICD-10 | Q78.0 (Osteogenesis imperfecta) |
| ICD-11 | LD24.00 |
| MeSH | C537614 |
| NCBITaxon | 9606 (Homo sapiens) |
| Gene HGNC | hgnc:9239 (PPIB) |
Information is derived from aggregated disease-level resources (OMIM, Orphanet), published molecular genetics studies, individual patient case reports, and animal model data from the Ppib-null mouse. Because OI type IX is extremely rare, the clinical literature consists primarily of small case series and individual family reports rather than large epidemiological cohorts.
OI type IX is a monogenic disorder. It is caused exclusively by biallelic (homozygous or compound heterozygous) loss-of-function variants in PPIB (chromosome 15q22.31), the gene encoding cyclophilin B (CyPB). There are no established non-genetic causes. The disorder arises from deficiency of CyPB, which impairs post-translational modification of type I procollagen in the endoplasmic reticulum.
| Variant | Effect | Families | Reference |
|---|---|---|---|
| c.556–559delAAGA (exon 5); p.Lys186GlnfsX8 | Frameshift, truncation of 31 C-terminal amino acids | 1 | PMID: 19781681 |
| c.451C>T (exon 4); p.Gln151X | Nonsense, removes 65 C-terminal amino acids | 1 | PMID: 19781681 |
| c.136-2A>G (splice site) | Likely NMD/null | 1 (Native American) | PMID: 27625864 |
| c.509G>A (exon 4); p.Gly170Asp | Missense, pro-isomerase domain | Multiple Chinese families | PMID: 34659339 |
| Multiple additional loss-of-function variants | Various null effects | Multiple | PMID: 21282188 |
Functional consequences: All reported variants result in absence or severe reduction of CyPB protein. Critically, CyPB loss is independent of its complex partners: in patient fibroblasts, P3H1 levels are substantially reduced (indicating P3H1 stability depends partially on CyPB), but CRTAP remains unaffected (PMID: 19781681).
No environmental risk factors specifically modulate risk of OI type IX. As a Mendelian autosomal recessive disorder, risk is determined entirely by carrier status of parents. Advanced parental age is not a significant risk factor. Consanguinity increases the probability of biallelic inheritance in rare-allele families.
No genetic protective factors have been identified that prevent disease expression once biallelic PPIB mutations are inherited. Modifier alleles affecting collagen processing could theoretically modulate severity but have not been systematically identified.
OI type IX spans a spectrum from perinatal lethality to moderate deforming disease (PMID: 21282188). The majority of reported patients have severe-to-lethal phenotypes, but at least one molecularly confirmed patient without rhizomelia has had a moderate disease course.
| Phenotype | HPO Term | Frequency | Severity | Notes |
|---|---|---|---|---|
| Recurrent bone fractures | HP:0002757 | Very frequent (80–100%) | Severe | Often begin prenatally; long bone and rib fractures at birth |
| Multiple prenatal fractures | HP:0002813 | Frequent | Severe | Key distinguishing feature of severe/lethal form |
| Osteoporosis / osteopenia | HP:0000939 | Very frequent | Severe | Dramatically reduced bone mineral density |
| Bone deformity / bowing of long bones | HP:0002645 | Frequent | Moderate–severe | Bowed femora and tibiae |
| Short stature | HP:0004322 | Frequent | Moderate–severe | Progressive growth deficiency |
| Kyphosis | HP:0002808 | Frequent | Progressive | Progressive spinal curvature; prominent in mouse model (PMID: 19997487) |
| Scoliosis | HP:0002650 | Frequent | Progressive | — |
| Platyspondyly | HP:0000926 | Present | Moderate | Flattened vertebral bodies |
| Pectus deformity | HP:0000768 | Present | Variable | Narrow chest contributing to respiratory compromise |
| Wormian bones | HP:0002645 (radiographic) | Present | — | Sutural bones on skull radiograph |
| Joint hypermobility | HP:0001382 | Present | Mild | Ligamentous laxity |
| Decreased calvarial ossification | HP:0002683 | Present in severe cases | — | — |
| Phenotype | HPO Term | Frequency | Notes |
|---|---|---|---|
| Blue sclerae | HP:0000592 | Present (variable) | Caused by abnormal scleral collagen; not consistently reported in all PPIB cases |
| Dentinogenesis imperfecta | HP:0000703 | Present (variable) | Discolored, translucent, fragile teeth |
| Sensorineural hearing loss | HP:0000407 | Present (inconsistent) | Congenital bilateral SNHL documented in one Native American case (PMID: 27625864); may be co-incidental in some patients |
| Loose/lax skin | HP:0000963 | Present in model | Documented prominently in Ppib-KO mouse; human data limited |
| Respiratory compromise | HP:0002093 | Frequent in severe cases | Secondary to narrow chest and rib fractures |
| Triangular face | HP:0000325 | Present | Characteristic facial gestalt |
| Delayed motor development | HP:0001270 | Frequent | Secondary to fractures and deformity |
| Wheelchair dependence | HP:0004736 | Present in severe cases | One surviving patient wheelchair-dependent by age 7 (PMID: 19781681) |
A key distinguishing phenotypic feature is the absence of rhizomelia (proximal limb shortening) in OI type IX, contrasting with OI types VII (CRTAP) and VIII (LEPRE1/P3H1), which typically show rhizomelic shortening of upper extremities. As noted for the Native American patient: "There appears to be a trend toward rhizomelic shortening and less severe bowing of the extremities, as compared to patients with comparably severe OI caused by COL1A1 or COL1A2 mutation" (PMID: 27625864)—though one case did show prenatal rhizomelia, indicating phenotypic overlap.
Hearing loss management recommendations: "Patients with OI caused by PPIB mutation should have appropriate early and regular management of their hearing" (PMID: 27625864). Whether congenital sensorineural hearing loss is a true recurrent feature of OI type IX or represents a co-incidental finding remains uncertain given limited case numbers.
All reported disease-causing variants are classified pathogenic or likely pathogenic (ACMG/AMP criteria). The founder variant p.Gly170Asp received PM3, PM1 (change at pro-isomerase domain), and PP3 (REVEL score 0.94) evidence codes (PMID: 34659339).
Variant types reported: - Nonsense (PTC) - Frameshift (deletion) - Splice-site - Missense (affecting pro-isomerase domain)
All result in loss of function. Biochemical studies consistently reveal undetectable CyPB protein in patient fibroblasts from families with frameshift/nonsense mutations (PMID: 19781681).
OI type IX is exclusively a germline disorder. Somatic mosaicism is theoretically possible but has not been documented in published literature.
No confirmed modifier genes have been described for OI type IX specifically. In the broader OI context, variants in BMP1, PLOD2, IFITM5, and other collagen-modifying genes have been considered modifiers, but these have not been specifically studied in PPIB-null disease.
Not applicable; OI type IX is a point mutation / small insertion-deletion disorder without large-scale chromosomal changes.
No specific environmental toxins, radiation, or occupational exposures are known to cause or exacerbate the molecular defect in OI type IX. As with all OI, secondary fracture risk may be modulated by environmental factors including fall risk, activity level, and calcium/vitamin D nutrition, but these do not alter the underlying genetic defect.
Respiratory infections are a significant complication (not cause) in patients with severe thoracic involvement. The Native American patient with lethal OI IX died at age 16 months from pneumonia (PMID: 27625864). Recurrent respiratory infections are a major source of morbidity in the severe phenotype.
The central pathophysiological mechanism in OI type IX is deficiency of cyclophilin B (CyPB), disrupting multiple post-translational modification steps of type I collagen in the endoplasmic reticulum.
CyPB (PPIB) functions as a component of a heterotrimeric complex with: 1. P3H1 (prolyl 3-hydroxylase 1, encoded by LEPRE1/P3H1) — the enzymatic hydroxylase 2. CRTAP (cartilage-associated protein) — structural scaffolding
This complex performs the 3-hydroxylation of proline at position 986 (P986) in the α1(I) chain of type I collagen — a modification essential for normal collagen fibril structure and bone mechanical properties.
Molecular functions of CyPB: - Peptidyl-prolyl cis-trans isomerase (PPIase) activity: CyPB is proposed to be the major PPIase catalyzing the rate-limiting step in collagen triple-helix formation, catalyzing cis-to-trans isomerization of proline imidic peptide bonds (proline constitutes ~20% of collagen residues) - Chaperone function: CyPB participates in ER chaperone complexes with BiP, GRP94, PDI, and calreticulin - Complex stabilization: CyPB is required for proper P3H1 retention/stability in cells; loss of CyPB leads to substantial reduction of P3H1 levels in patient fibroblasts
Prolyl-3 hydroxylation: In PPIB-null patient fibroblasts, P986 3-hydroxylation is severely reduced (to ~33% of controls in OI IX, compared to 93–100% in controls). Paradoxically, this is less severe than in OI VII (CRTAP null, ~16%) and OI VIII (P3H1 null, ~22%), suggesting CyPB influences complex function but P3H1 retains partial activity without CyPB (PMID: 19781681). In the Ppib-KO mouse, only 5–11% of α1(I) P986 residues were hydroxylated in osteoblasts and fibroblasts, and 1–2% in tissue (PMID: 24968150).
Collagen folding delay: "Collagen folds more slowly in the absence of CyPB," with 5–8 minute delays in triple helix formation documented in Ppib-KO osteoblasts. This implicates CyPB as the predominant collagen PPIase, though residual CsA-sensitive activity (possibly FKBPs) provides partial redundancy (PMID: 24968150).
Lysyl hydroxylation defects — a distinctive biochemical signature: Beyond the prolyl-3 hydroxylation defect, CyPB deficiency creates tissue-specific dysregulation of helical lysyl hydroxylation and glycosylation by disrupting lysyl hydroxylase (LH) chaperone complexes: - In bone: site-specific underhydroxylation at crosslinking residues α1(I) K87 (57% vs. 98% in wild-type) and α2(I) K87 (45% vs. 77%), leading to an altered collagen crosslink profile - In skin: >80% decrease in total hydroxylysine; positive regulatory LH chaperones (FKBP65/Sc65/P3H3) drop to <11% of wild-type while negative regulator HSP47 increases - "CyPB deficiency profoundly affects Lys post-translational modifications of collagen likely by modulating LH chaperone complexes" (PMID: 30562343)
Crosslink abnormalities: In Ppib-KO bone: - Nearly 3-fold increase in the helical lysine-involved crosslink hydroxylysinonorleucine (HLNL) - Lysylpyridinoline (LP) increased 4–5-fold - HP/LP (hydroxylysylpyridinoline/lysylpyridinoline) ratio decreased 4.25- to 5.6-fold - Deoxy-HHMD and LNL (non-hydroxylysine crosslinks) form exclusively in KO tissue (PMID: 24968150)
These crosslink alterations reduce bone mechanical competence independently of the prolyl-3 hydroxylation defect.
ER trafficking defect: In CyPB-deficient fibroblasts, "a significant amount of collagen remained in the ER" rather than trafficking properly to the Golgi after ascorbic acid stimulation (PMID: 19997487), indicating disrupted intracellular collagen transport.
Reduced collagen deposition: Collagen deposited into insoluble extracellular matrix by Ppib-KO osteoblasts was decreased ~80%, linked to altered fibrillogenesis and abnormal fibril structure (PMID: 24968150).
Transmission electron microscopy of Ppib-KO mice shows collagen fibrils are abnormally enlarged — on average 1.45 times wider than controls (114.6 ± 22.4 nm vs. 78.6 ± 12.4 nm diameter) (PMID: 19997487), indicating disrupted fibril assembly.
Biallelic PPIB loss-of-function mutation
↓
Absence of cyclophilin B (CyPB) in ER
↓
[Branch 1] Reduced P3H1 stability → decreased Pro-986 3-hydroxylation
[Branch 2] Disrupted PPIase activity → delayed collagen triple-helix folding
[Branch 3] Disrupted LH chaperone complexes → abnormal helical lysyl hydroxylation
↓
Altered collagen crosslink chemistry (LP↑, HP/LP ratio↓)
Abnormal fibril morphology (enlarged fibrils)
Reduced collagen matrix deposition
↓
Defective bone matrix organization and mechanical incompetence
↓
Severe osteoporosis, bone fragility, susceptibility to fractures
Primary cell types: - Osteoblasts (CL:0000062): Primary producers of type I collagen; most severely affected by CyPB deficiency - Chondrocytes (CL:0000138): Type II collagen also lacks Pro3-hydroxylation in KO mice - Fibroblasts (CL:0000057): Show ER retention of collagen and reduced P3H1 levels - Odontoblasts (CL:0000060): Involved in dentinogenesis imperfecta
GO Biological Processes: - Collagen fibril organization (GO:0030199) - Peptidyl-proline modification (GO:0018208) - Post-translational protein modification (GO:0043687) - Collagen biosynthetic process (GO:0032964) - Bone mineralization (GO:0030282) - Protein folding (GO:0006457) - Endoplasmic reticulum to Golgi vesicle-mediated transport (GO:0006888)
GO Cellular Components: - Endoplasmic reticulum lumen (GO:0005788) - Collagen-containing extracellular matrix (GO:0062023) - Extracellular matrix (GO:0031012)
No sex predilection — autosomal recessive, affects males and females equally.
OI type IX cases have been reported in multiple ethnic and geographic contexts: - North America (consanguineous families; one Native American family) - China/Taiwan (multiple families with founder variant) - Middle Eastern consanguineous families (not specifically OI IX, but recessive OI broadly)
No OI-type-IX-specific diagnostic criteria exist. Diagnosis follows the general OI diagnostic approach combined with molecular confirmation:
Available genetic tests: NIH GTR lists 34 clinical tests for OI type IX conditions, including sequence analysis (31 tests), deletion/duplication analysis (18), and targeted variant analysis (7).
| Condition | Key Distinguishing Feature |
|---|---|
| OI Type VII (CRTAP) | Rhizomelia present; similar prolyl 3-hydroxylation defect |
| OI Type VIII (LEPRE1/P3H1) | Rhizomelia; white sclerae; P986 hydroxylation more severely reduced |
| OI Type I-IV (dominant, COL1A1/2) | Autosomal dominant; structurally abnormal collagen; different collagen electrophoresis |
| Child abuse / non-accidental injury | Normal genetics; absence of family history |
| Hypophosphatasia | Low ALP; ALPL mutation; responsive to enzyme replacement |
Bisphosphonates are the most established pharmacological treatment across all OI types, including recessive forms:
No PPIB-specific pharmacological trials exist; bisphosphonate data for OI IX is extrapolated from broader OI studies.
MAXO term: MAXO:0000647 (chemotherapy) — not applicable; pharmacotherapy with bisphosphonates: NCIT:C15986 (Pharmacotherapy); specific agents: CHEBI:60753 (pamidronate), CHEBI:74699 (zoledronic acid)
MAXO term: MAXO:0000950 (supportive care) for symptom management
MAXO term: MAXO:0000004 (surgical procedure)
OI type IX is not documented as a naturally occurring disease in veterinary species. The PPIB orthologue is highly conserved across mammals.
NCBI Taxon: Mus musculus (10090) — primary model
The Ppib-null (cyclophilin B-deficient) mouse is the principal model organism for OI type IX and was characterized by Choi et al. (PMID: 19997487):
Phenotype: - Severe osteopenia with dramatically reduced trabecular bone volume - Increased trabecular separation, reduced trabecular number - Progressive kyphosis, evident by 8 weeks, progressively worsening - Reduced body size and weight - Lifespan 40–50 weeks - Loose, lax skin (Ehlers-Danlos-like properties) - Normal femur-to-tibia ratios (no rhizomelia) - Normal fertility and birth appearance
Collagen findings: - Abnormally enlarged collagen fibrils (114.6 ± 22.4 nm vs. 78.6 ± 12.4 nm in controls) — "on average 1.45 times wider than similar samples from littermate control mice" (PMID: 19997487) - Near-total loss of Pro-986 3-hydroxylation (1–5% vs. near-100% in controls) - Severely disrupted helical lysyl hydroxylation and crosslink pattern (PMID: 24968150) - 80% reduction in collagen matrix deposition by osteoblasts - Reduced total skin collagen content; reduced skin tensile strength
Molecular findings: - P3H1 levels substantially reduced; CRTAP levels unaffected — demonstrating CyPB-dependent P3H1 stabilization - Collagen retained in ER rather than trafficking to Golgi - Residual collagen PPIase activity attributable to cyclosporine A-sensitive enzymes (suggesting FKBP redundancy)
Model limitations (Human-Model Mismatch considerations): - Mice do not show rhizomelia observed in some human cases - Mouse lifespan (40–50 weeks) and the degree of phenotypic severity may not fully recapitulate the human perinatal lethal form - Mice show pronounced skin laxity; this is less well-documented in human patients - Mouse bone biology differs from human (faster remodeling, different cortical organization)
Genetic model type: Constitutive knockout (whole-body Ppib deletion)
Available resources: - MGI: Available through IMPC and KOMP2 programs - JAX: Ppib-null alleles available for research
| PMID | Description |
|---|---|
| 19781681 | Van Dijk et al. — First description of PPIB mutations causing OI (2 families; molecular basis established) |
| 19997487 | Choi et al. — Severe OI in Ppib-KO mice; phenotypic and molecular characterization |
| 20089953 | Barnes et al. (NEJM) — Lack of cyclophilin B in OI with normal collagen folding (homozygous start-codon mutation; moderate OI, no rhizomelia) |
| 21282188 | Van Dijk et al. — PPIB mutations delay procollagen chain association; perinatal lethal to moderate phenotype spectrum |
| 24968150 | Pokidysheva et al. — Abnormal type I collagen PTM and crosslinking in Ppib-KO mouse; lysyl hydroxylation and crosslink chemistry |
| 27625864 | Balasubramanian et al. — PPIB mutation with severe phenotype and congenital hearing loss (Native American case) |
| 34659339 | Zhu et al. — Founder PPIB variant p.Gly170Asp in Chinese population; prevalence estimate 1/1,000,000 |
| 30562343 | Ishikawa et al. — Cyclophilin B control of skin type I collagen lysine PTMs via LH chaperone complexes |
Suggested MONDO ID: MONDO:0012978 (Osteogenesis imperfecta type IX)
Key HPO terms: - HP:0002757 (Recurrent fractures) - HP:0000939 (Osteoporosis) - HP:0002645 (Wormian bones) - HP:0002808 (Kyphosis) - HP:0002650 (Scoliosis) - HP:0000592 (Blue sclerae) - HP:0000703 (Dentinogenesis imperfecta) - HP:0000407 (Sensorineural hearing impairment) - HP:0004322 (Short stature) - HP:0001382 (Joint hypermobility) - HP:0000926 (Platyspondyly)
Key GO terms (Biological Process): - GO:0030199 (Collagen fibril organization) - GO:0018208 (Peptidyl-proline modification) - GO:0032964 (Collagen biosynthetic process) - GO:0006457 (Protein folding)
Key CL terms: - CL:0000062 (Osteoblast) - CL:0000057 (Fibroblast) - CL:0000138 (Chondrocyte)
Sources: - PPIB Mutations Cause Severe Osteogenesis Imperfecta (PMC2756556) - Severe Osteogenesis Imperfecta in Cyclophilin B–Deficient Mice (PMC2777385) - Abnormal Type I Collagen PTM and Crosslinking in Cyclophilin B KO Mouse (PMC4072593) - Osteogenesis imperfecta caused by PPIB mutation with congenital hearing loss (PMC5020983) - A Founder Pathogenic Variant of PPIB Unique to Chinese Population (PMC8511635) - Cyclophilin B control of lysine PTMs of skin type I collagen (PMC6602281) - Osteogenesis Imperfecta - StatPearls (NBK536957) - OMIM #259440 — Osteogenesis Imperfecta, Type IX - NIH GTR — Osteogenesis imperfecta type 9 - Setrusumab for OI — Phase 2b ASTEROID Study (PMC11371902) - Mutations in PPIB delay procollagen chain association (HMG, PMID:21282188) - Bisphosphonate therapy for osteogenesis imperfecta (PMC6611487)
Osteogenesis Imperfecta Type IX (OI type IX) is an autosomal recessive form of osteogenesis imperfecta, a heritable skeletal dysplasia characterized by bone fragility, skeletal deformity, and growth deficiency (jovanovic2024updateonthe pages 8-9). OI type IX is caused by biallelic mutations in the PPIB gene (MIM 123841), which encodes cyclophilin B (CyPB), a 21-kDa endoplasmic reticulum (ER)-resident peptidyl-prolyl cis-trans isomerase (PPIase) (dijk2009ppibmutationscause pages 1-2). The disease was first described in 2009 when van Dijk et al. reported the initial two families with PPIB mutations causing severe OI (dijk2009ppibmutationscause pages 1-2).
The following table summarizes the key disease characteristics:
| Characteristic | Summary |
|---|---|
| Disease Name | Osteogenesis Imperfecta Type IX (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, jovanovic2024updateonthe pages 8-9) |
| OMIM ID | 259440 (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 1-2) |
| Gene | PPIB (peptidyl-prolyl cis-trans isomerase B) (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 2-3) |
| Protein | Cyclophilin B (CyPB), an ER-resident peptidyl-prolyl cis-trans isomerase and collagen chaperone (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, jovanovic2024updateonthe pages 8-9) |
| Chromosome | 15q22.31 (reported genomic locus for PPIB; chromosome location not explicitly stated in retrieved context) (pyott2011mutationsinppib pages 2-3) |
| Inheritance | Autosomal recessive (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 3-4) |
| Severity Range | Moderate to perinatal lethal; reported phenotypes span moderate OI to severe/perinatal lethal disease (jovanovic2024updateonthe pages 8-9, pyott2011mutationsinppib pages 1-2) |
| Key Clinical Features | Bone fragility, multiple fractures, short stature/growth deficiency, bowed long bones, scoliosis/kyphosis, gray sclerae, joint hypermobility, absence of rhizomelia, and no dentinogenesis imperfecta reported in at least one patient (dijk2009ppibmutationscause pages 2-3, pyott2011mutationsinppib pages 3-4, cotti2025moleculardriversof pages 9-10) |
| Molecular Mechanism | Impaired procollagen prolyl 3-hydroxylation, delayed collagen folding/chain association, abnormal post-translational modification and cross-linking, intracellular retention of overmodified collagen with ER stress/cellular stress (cabral2014abnormaltypei pages 1-2, etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 1-2) |
| Prevalence | Ultra-rare; literature in retrieved context includes the first 2 families (2009) and 3 additional families (2011), consistent with <10 families reported in early literature (dijk2009ppibmutationscause pages 1-2, pyott2011mutationsinppib pages 3-4) |
| Animal Models | Ppib−/− mice recapitulate OI with kyphosis, osteoporosis, reduced BMD/BV/TV, abnormal collagen fibrils, increased brittleness, and reduced bone strength (cabral2014abnormaltypei pages 2-3, choi2009severeosteogenesisimperfecta pages 1-2, cabral2014abnormaltypei pages 1-2) |
| Treatment | Supportive multidisciplinary care; bisphosphonates are standard for moderate/severe OI, and intravenous pamidronate was used in reported PPIB-mutant patients; orthopedic surgery, physiotherapy, and rehabilitation are important adjuncts (dijk2009ppibmutationscause pages 2-3, etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8, kresnadi2024theroleof pages 5-7) |
Table: This table summarizes the core disease characteristics of Osteogenesis Imperfecta Type IX, including genetics, clinical presentation, mechanism, rarity, model systems, and current management. It is useful as a compact knowledge-base style overview anchored to cited evidence from the retrieved literature.
The information is derived from aggregated disease-level resources including landmark genetic studies, reviews, and animal model characterization, rather than individual patient electronic health records.
OI type IX is a monogenic disorder caused exclusively by homozygous or compound heterozygous loss-of-function mutations in the PPIB gene (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 2-3). There are no known environmental or infectious etiological components. The disease is purely genetic in origin, arising from defects in the collagen biosynthetic machinery (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4).
No specific environmental risk factors have been identified for OI type IX. As a congenital genetic disorder, the disease manifests independently of environmental exposures. However, environmental factors such as trauma, inadequate nutrition (particularly calcium and vitamin D deficiency), and immobilization may exacerbate fracture risk in affected individuals.
No genetic or environmental protective factors specific to OI type IX have been identified. General bone health measures (adequate nutrition, weight-bearing activity when possible) may offer modest benefit as in all forms of OI.
No specific gene-environment interactions have been described for OI type IX.
OI type IX presents with a phenotypic spectrum ranging from moderate to perinatal lethal disease, clinically compatible with Sillence type II-B/III OI (dijk2009ppibmutationscause pages 1-2). The condition is generally described as less severe than OI types VII (CRTAP) and VIII (P3H1), and notably occurs without rhizomelia (cotti2025moleculardriversof pages 9-10).
Skeletal phenotype (HP:0000924 – Abnormality of the skeletal system): - Bone fragility / recurrent fractures (HP:0002757): Multiple long-bone fractures, often with prenatal or neonatal onset. Fractures of humeri, radii, ulna, femora, tibiae, and fibula with callus formation have been reported (dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 1-2). Frequency: virtually 100% of affected individuals. - Bowed long bones (HP:0002982): Bowing of femora, tibiae, ulnae, and anterior bowing of tibiae are consistent findings (dijk2009ppibmutationscause pages 2-3, cotti2025moleculardriversof pages 9-10). Frequency: high, >90%. - Short stature (HP:0004322): Severe growth deficiency. One patient at age 8 years had a height of 79.9 cm (SDS −8.4), corresponding to the 50th percentile for a 17-month-old child. Another patient at 6 months measured 47.4 cm (SDS −8.8) (dijk2009ppibmutationscause pages 2-3). - Scoliosis / Kyphoscoliosis (HP:0002650, HP:0002751): Kyphoscoliosis of thoracic and lumbar spine was evident in reported patients (dijk2009ppibmutationscause pages 2-3, cotti2025moleculardriversof pages 9-10). - Abnormal rib morphology (HP:0000772): Discontinuously beaded ribs, slender ribs, and small bell-shaped thorax have been described (dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 1-2). - Platyspondyly (HP:0000926): Described in some patients (pyott2011mutationsinppib pages 3-4). - Decreased calvarial mineralization (HP:0100252): Near-absence of calvarial mineralization described in severe cases (pyott2011mutationsinppib pages 3-4). - Large anterior fontanelle (HP:0000260): Noted in affected neonates (dijk2009ppibmutationscause pages 2-3).
Non-skeletal features: - Gray sclerae (HP:0000592): Gray-colored sclerae typical of severe OI were noted in at least one patient, not the distinctly blue sclerae of OI type I (dijk2009ppibmutationscause pages 2-3). - No dentinogenesis imperfecta: Absence of dentinogenesis imperfecta was specifically noted in at least one patient (dijk2009ppibmutationscause pages 2-3). - Joint hypermobility (HP:0001382): Hypermobility of joints, especially hip and finger joints, was observed (dijk2009ppibmutationscause pages 2-3, cotti2025moleculardriversof pages 9-10). - Motor developmental delay (HP:0001270): Gross motor development was delayed; one patient achieved unsupported sitting at age 2.5 years and standing with support at age 4.5 years, and never walked independently (dijk2009ppibmutationscause pages 2-3). - Skin laxity: Loose, thin skin similar to OI patients has been observed in animal models (choi2009severeosteogenesisimperfecta pages 2-3, choi2009severeosteogenesisimperfecta pages 3-5).
Patients with OI type IX experience severe impairment in mobility and activities of daily living. The most severely affected children are wheelchair-dependent and unable to ambulate independently (dijk2009ppibmutationscause pages 2-3). Chronic fractures, skeletal deformity, and short stature profoundly affect quality of life. Perinatal lethal forms preclude survival.
PPIB (Peptidyl-Prolyl Isomerase B; HGNC:9255; OMIM 123841), located on chromosome 15q22.31, comprises 5 exons and encodes a 216-amino acid protein (pyott2011mutationsinppib pages 2-3, pyott2011mutationsinppib pages 3-4). The gene product, cyclophilin B (CyPB), is an ER-resident PPIase belonging to the cyclophilin family, with roles in collagen folding, prolyl 3-hydroxylation, inflammation, viral infection, and cancer (dijk2009ppibmutationscause pages 1-2, jovanovic2024updateonthe pages 8-9).
The following table details the specific PPIB mutations reported in OI type IX patients:
| Family / report | Mutation (DNA level) | Mutation (protein level) | Mutation type | Exon / intron location | Effect on CyPB protein | Clinical severity | Reference / year |
|---|---|---|---|---|---|---|---|
| van Dijk family 1 | c.556_559delAAGA | p.Lys186Glnfs*8 | Homozygous frameshift deletion | Exon 5 | Replaces the last 31 highly conserved C-terminal amino acids; mutant mRNA present, but intracellular CyPB was undetectable in proband fibroblasts, consistent with absent or unstable truncated protein (dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 3-6) | Perinatal lethal / severe, compatible with Sillence type II-B; prenatal fractures, bowed/fractured long bones without rhizomelia (dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 1-2) | van Dijk et al., 2009 (dijk2009ppibmutationscause pages 1-2, dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 3-6) |
| van Dijk family 2 | c.451C>T | p.Gln151* | Homozygous nonsense | Exon 4 | Premature truncation removing the last 65 amino acids at the C-terminus; predicted to impair function or trigger nonsense-mediated decay (dijk2009ppibmutationscause pages 3-6) | Severe deforming to moderately severe OI; one child survived with OI type III, marked short stature, kyphoscoliosis, wheelchair dependence; affected sib diagnosed prenatally/neonatally (dijk2009ppibmutationscause pages 2-3) | van Dijk et al., 2009 (dijk2009ppibmutationscause pages 1-2, dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 3-6) |
| Pyott family 1 (P1) | c.414_423del | p.Ser139Thrfs*21 | Homozygous frameshift deletion | Exon 4 | Creates a premature termination codon 61 nt downstream; marked nonsense-mediated mRNA decay; predicted shortened 158-aa protein not detected on western blot (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 3-4) | Perinatal lethal to very severe OI phenotype (study cohort range stated as perinatal lethal to moderate) (pyott2011mutationsinppib pages 2-3, pyott2011mutationsinppib pages 1-2) | Pyott et al., 2011 (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 3-4, pyott2011mutationsinppib pages 1-2) |
| Pyott family 2 (P2) | c.120delC + c.313G>A | frameshift allele truncating downstream of c.120delC; p.Gly105Arg on second allele | Compound heterozygous: frameshift + missense | Exon 2 + exon 2 | c.120delC allele undergoes rapid mRNA degradation; only the c.313A transcript is readily detected in cDNA; western blot showed only a very small amount of CYPB protein, indicating marked reduction of residual protein (pyott2011mutationsinppib pages 5-6) | Moderate OI within reported spectrum; study title and text state phenotypes ranged from perinatal lethal to moderate (pyott2011mutationsinppib pages 2-3, pyott2011mutationsinppib pages 1-2) | Pyott et al., 2011 (pyott2011mutationsinppib pages 5-6, pyott2011mutationsinppib pages 1-2) |
| Pyott family 3 (P3) | c.343+1G>A | Splice defect causing p.Gly115 deletion plus 10-aa insertion in one transcript; exon 3 skipping in alternate transcript | Homozygous splice-donor mutation | Intron 3 donor site | Produced two abnormal transcripts: one with retention of 27 bp of intron 3 yielding an in-frame altered protein, and one with exon 3 skipping causing frameshift/PTC and NMD; no CYPB detected on western blot (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 5-6) | Moderate OI within reported spectrum; radiographs at 9–16 years showed broad poorly modeled femora, cortical thinning, and stable scoliosis (pyott2011mutationsinppib pages 3-4, pyott2011mutationsinppib pages 1-2) | Pyott et al., 2011 (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 5-6, pyott2011mutationsinppib pages 3-4, pyott2011mutationsinppib pages 1-2) |
| Additional patients noted in later review | Start-codon Arg-to-Met substitution (exact cDNA not provided in available context) | Arg-to-Met substitution affecting translation initiation / start codon | Start-codon missense / initiation codon defect | Start codon | Reported in other OI type IX patients; notable because it was described as not delaying collagen folding or altering proline 3-hydroxylation levels in the cited review summary, suggesting residual or atypical function (cotti2025moleculardriversof pages 9-10) | OI type IX with severe bone deformities in broader phenotype spectrum; exact family-level severity not detailed in available context (cotti2025moleculardriversof pages 9-10) | Cotti et al., 2025 review summary (cotti2025moleculardriversof pages 9-10) |
Table: This table summarizes the reported PPIB variants associated with osteogenesis imperfecta type IX, including their molecular class, predicted effect on cyclophilin B, and associated clinical severity. It is useful for linking genotype to mechanism and phenotype across the key early case series and later review evidence.
Key variant types include: - Frameshift deletions: c.556_559delAAGA (p.Lys186GlnfsX8), c.414_423del (p.Ser139ThrfsX21), c.120delC (dijk2009ppibmutationscause pages 2-3, pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 3-4) - Nonsense: c.451C>T (p.Gln151X) (dijk2009ppibmutationscause pages 3-6) - Splice-site: c.343+1G>A (IVS3+1G>A) (pyott2011mutationsinppib pages 4-5) - Missense (compound heterozygous): c.313G>A (p.Gly105Arg) (pyott2011mutationsinppib pages 5-6) - Start codon substitution: Arg-to-Met substitution affecting translation initiation (cotti2025moleculardriversof pages 9-10)
All reported variants are classified as pathogenic and result in absent or severely reduced CyPB protein levels (dijk2009ppibmutationscause pages 3-6, pyott2011mutationsinppib pages 5-6). The variants are germline in origin. Population allele frequencies in gnomAD are expected to be extremely low or absent, consistent with ultra-rare recessive disease.
PPIB mutations predominantly cause loss of function through: 1. Nonsense-mediated mRNA decay (NMD) leading to absent protein (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 3-4) 2. Protein truncation/instability with undetectable CyPB on western blot (dijk2009ppibmutationscause pages 3-6, pyott2011mutationsinppib pages 4-5) 3. Marked reduction of CyPB protein with residual partial function in compound heterozygotes (pyott2011mutationsinppib pages 5-6)
Notably, PPIB mutations do not destabilize the other complex members CRTAP and P3H1; immunohistochemistry of bone tissue from PPIB-mutant patients showed positive staining for both CRTAP and P3H1, despite absent CyPB signal (dijk2009ppibmutationscause pages 3-6). This contrasts with CRTAP or LEPRE1 (P3H1) mutations, where the partner proteins are also destabilized.
No specific modifier genes have been identified for OI type IX.
No disease-specific epigenetic modifications have been described for OI type IX.
OI type IX is a purely genetic disorder with no identified environmental causal factors, lifestyle contributors, or infectious agents. General bone health optimization (nutrition, vitamin D, calcium, and avoidance of high-impact trauma) is recommended as supportive management.
CyPB participates in multiple interconnected pathways relevant to collagen biosynthesis:
1. Prolyl 3-Hydroxylation Complex (GO:0030867 – rough endoplasmic reticulum membrane): CyPB forms a 1:1:1 complex with P3H1 (encoded by LEPRE1) and CRTAP in the ER, responsible for 3-hydroxylation of proline at position 986 (Pro986) in the α1 chains of type I collagen (dijk2009ppibmutationscause pages 1-2, cabral2014abnormaltypei pages 1-2). In PPIB-deficient patients, Pro986 3-hydroxylation is reduced to approximately 30% of control levels (compared to 16% in CRTAP-deficient and 22% in P3H1-deficient patients) (dijk2009ppibmutationscause pages 3-6). In Ppib knockout mice, 3-hydroxylation is essentially absent (2–11% residual activity) (cabral2014abnormaltypei pages 1-2).
2. Peptidyl-Prolyl Cis-Trans Isomerization (GO:0003755): CyPB catalyzes the cis-trans isomerization of prolyl-peptide bonds, which is the rate-limiting step in collagen triple helix folding (cabral2014abnormaltypei pages 1-2). Loss of CyPB delays collagen folding, leading to extended exposure of unfolded procollagen chains to modifying enzymes (hydroxylases and glycosyltransferases), resulting in overmodification of the collagen triple helix (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, cotti2025moleculardriversof pages 7-9).
3. Procollagen Chain Association and C-Propeptide Folding: CyPB facilitates folding of the proline-rich C-terminal propeptide regions required for procollagen chain association. Loss of CyPB causes slow incorporation of proα1(I) chains into trimers (pyott2011mutationsinppib pages 1-2).
4. Lysyl Hydroxylation and Collagen Crosslinking: CyPB indirectly regulates lysyl hydroxylase 1 (LH1/PLOD1) activity. In CyPB-deficient mice and cells, site-specific helical lysine hydroxylation is altered, particularly at the critical crosslinking residue K87, which shows significantly reduced hydroxylation (~20% unhydroxylated vs. <1% in wild-type) (cabral2014abnormaltypei pages 12-13, cabral2014abnormaltypei pages 6-8). This leads to increased underhydroxylated crosslinks, altered HP/LP (hydroxylysyl pyridinoline/lysyl pyridinoline) crosslink ratios, and ultimately compromised collagen fiber integrity and bone strength (cabral2014abnormaltypei pages 12-13, cabral2014abnormaltypei pages 1-2).
ER Stress and Unfolded Protein Response (UPR): Overmodified procollagen accumulates in the ER, where it binds to protein disulfide isomerase (PDI) and prolyl 4-hydroxylase 1 (P4H1), triggering ER stress and UPR activation (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, jovanovic2024updateonthe pages 15-16). Application of the chaperone 4-phenylbutyrate (4-PBA) has been shown to decrease UPR and ameliorate cellular homeostasis in OI patient fibroblasts with prolyl 3-hydroxylation complex defects (jovanovic2024updateonthe pages 15-16).
Impaired Procollagen Trafficking: In CyPB-deficient cells, procollagen fails to properly localize to the Golgi apparatus and instead accumulates in the ER (choi2009severeosteogenesisimperfecta pages 1-2, choi2009severeosteogenesisimperfecta pages 2-3). CyPB normally traverses the ER with procollagen into pre-Golgi intermediate vesicles, facilitating procollagen export (jovanovic2024updateonthe pages 19-20).
Abnormal Collagen Fibrillogenesis: Collagen fibrils in CyPB-deficient tissues exhibit abnormal morphology, with fibrils approximately 1.45 times wider than normal (114.6 nm vs. 78.6 nm diameter) (choi2009severeosteogenesisimperfecta pages 2-3). Collagen deposition into the extracellular matrix is decreased in CyPB-deficient cells (cabral2014abnormaltypei pages 1-2).
Key distinguishing features of OI type IX include: autosomal recessive inheritance, absence of rhizomelia, generally milder than types VII/VIII, partial preservation of Pro986 3-hydroxylation in some patients, and CRTAP/P3H1 proteins remaining stable despite CyPB deficiency (dijk2009ppibmutationscause pages 3-6, cotti2025moleculardriversof pages 9-10).
Bisphosphonates (MAXO:0001298 – bisphosphonate administration): - Intravenous pamidronate has been directly used in reported OI type IX patients. One patient (P2-1) received 0.5 mg/kg/day IV pamidronate for 3 consecutive days every 6 weeks, starting at age 2 weeks; another (P2-2) commenced pamidronate shortly after birth (dijk2009ppibmutationscause pages 2-3) - Bisphosphonates bind to hydroxyapatite crystals and induce osteoclast apoptosis, reducing bone resorption and increasing bone mass (etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8) - IV bisphosphonate therapy has positive effects on skeletal pain, bone mass, and mobility in OI generally, though reduction in fracture rate has not been conclusively demonstrated in controlled trials (etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8, dwan2016bisphosphonatetherapyfor pages 5-6) - It is not clear whether patients with recessive OI respond identically to those with dominant OI (alharbi2016asystematicoverview pages 5-6)
Denosumab: - A monoclonal antibody against RANKL showing promise in OI, particularly types III, IV, and VI, by increasing BMD and reducing fracture risk (kresnadi2024theroleof pages 8-9) - No specific data on denosumab use in OI type IX have been reported
Other agents under investigation: - Sclerostin inhibitors (anti-sclerostin antibodies) have shown increases in bone formation rate and bone mass in murine models (dinulescu2024newperspectivesof pages 2-4) - Teriparatide (recombinant PTH) and TGF-β antibodies are being explored (dinulescu2024newperspectivesof pages 2-4) - 4-Phenylbutyrate (4-PBA) has shown amelioration of ER stress/UPR in OI fibroblasts in vitro (jovanovic2024updateonthe pages 15-16)
No naturally occurring PPIB-mutation OI has been documented in companion animals or wildlife. The orthologous gene Ppib in mouse (Mus musculus, NCBI Taxon: 10090) has been studied extensively through knockout models.
Two independent Ppib knockout mouse models have been generated and characterized:
Choi et al. (2009) model (choi2009severeosteogenesisimperfecta pages 1-2, choi2009severeosteogenesisimperfecta pages 2-3): - Generated using Cre/lox system targeting exon 3 of Ppib - Phenotype: kyphosis appearing at 8 weeks of age and progressing with age; severe osteoporosis; reduced bone density on DXA; abnormal collagen fibril morphology (fibrils ~1.45× wider than normal, 114.6 nm vs. 78.6 nm); absence of rhizomelia; loose/thin skin; reduced body mass; lifespan approximately 40–50 weeks - Molecular findings: essentially absent Pro986 3-hydroxylation; substantially reduced P3H1 levels (while CRTAP unaffected); impaired procollagen localization to Golgi; procollagen accumulation in ER
Cabral/Marini et al. (2014) model (cabral2014abnormaltypei pages 1-2, cabral2014abnormaltypei pages 2-3, cabral2014abnormaltypei pages 3-6): - Phenotype: small body size (~25% less body weight); reduced femoral aBMD and BV/TV; reduced mechanical properties with 48% less energy required to fracture, 37% reduced stiffness; dramatically increased brittleness (77% reduced post-yield displacement, 89% reduced plastic energy); deformed rib cage; kyphosis - Molecular findings: only 2–11% residual prolyl 3-hydroxylation; slower collagen folding but treatment with cyclosporine A (CsA) caused further delay, suggesting existence of another collagen PPIase; site-specific underhydroxylation at K87 (~20% unhydroxylated vs. <1% wild-type) and K933; increased underhydroxylated crosslinks; altered HP/LP crosslink ratio; decreased collagen deposition into matrix; abnormal fibril structure
Both models faithfully recapitulate the human OI type IX phenotype, including bone fragility, osteoporosis, kyphosis, growth deficiency, abnormal collagen fibrils, and absence of rhizomelia (choi2009severeosteogenesisimperfecta pages 1-2). The models have been essential for understanding the molecular pathophysiology, particularly the dual role of CyPB in both prolyl 3-hydroxylation and collagen crosslinking regulation.
Osteogenesis Imperfecta Type IX is an ultra-rare autosomal recessive bone fragility disorder caused by loss-of-function mutations in PPIB, encoding cyclophilin B (CyPB). The disease was first described in 2009 and fewer than 10 families have been reported in the literature (dijk2009ppibmutationscause pages 1-2, pyott2011mutationsinppib pages 3-4). CyPB is a multifunctional ER-resident protein that serves as a peptidyl-prolyl cis-trans isomerase, molecular chaperone, and component of the P3H1/CRTAP/CyPB prolyl 3-hydroxylation complex (jovanovic2024updateonthe pages 8-9, dijk2009ppibmutationscause pages 1-2). Its deficiency leads to delayed collagen folding, overmodification, impaired crosslinking, ER stress, and ultimately fragile bone with diminished mechanical properties (cabral2014abnormaltypei pages 1-2, etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4). The clinical phenotype spans moderate to perinatal lethal severity, with features including multiple fractures, severe short stature, bowed long bones, kyphoscoliosis, and gray sclerae (dijk2009ppibmutationscause pages 2-3, cotti2025moleculardriversof pages 9-10). Current management relies on bisphosphonate therapy, orthopedic intervention, and supportive care, with novel therapeutic approaches including gene therapy and anti-sclerostin antibodies under investigation for OI broadly (dinulescu2024newperspectivesof pages 2-4, etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8). Ppib knockout mice provide valuable preclinical models that faithfully recapitulate the human disease phenotype (cabral2014abnormaltypei pages 2-3, choi2009severeosteogenesisimperfecta pages 1-2).
References
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