Ask OpenScientist

Ask a research question about Osteogenesis Imperfecta Type IX. OpenScientist will conduct autonomous deep research using the Disorder Mechanisms Knowledge Base and PubMed literature (typically 10-30 minutes).

Submitting...

Do not include personal health information in your question. Questions and results are cached in your browser's local storage.

1
Inheritance
3
Pathophys.
12
Phenotypes
1
Gaps
3
Pathograph
1
Genes
3
Medical Actions
7
References
2
Deep Research
👪

Inheritance

1
Autosomal Recessive HP:0000007
Autosomal recessive inheritance from biallelic loss-of-function PPIB variants; heterozygous carriers are clinically unaffected.
Autosomal recessive inheritance
Show evidence (2 references)
PMID:19781681 SUPPORT Human Clinical
"To our knowledge we present the first two families with recessive OI caused by PPIB gene mutations."
Establishes the autosomal recessive inheritance of OI type IX from biallelic PPIB mutations.
PMID:28242392 SUPPORT Human Clinical
"We report a rare pedigree with an autosomal recessive osteogenesis imperfecta type IX (OI-IX) caused by two novel PPIB mutations"
Independent pedigree confirming autosomal recessive OI type IX from biallelic PPIB mutations.
?

Discussions and Knowledge Gaps

1
Is cyclophilin B the unique rate-limiting peptidyl-prolyl cis-trans isomerase for type I collagen folding in vivo, and why are the biochemical consequences of its loss (3-hydroxylation, helical overmodification, folding rate) so heterogeneous across PPIB-deficient patients?
KNOWLEDGE GAP OPEN disc_oi9_cypb_rate_limiting_ppiase
CyPB was long considered the unique PPIase catalyzing the rate-limiting step of collagen folding, but human PPIB-null cases are biochemically discordant: lethal cases show reduced alpha1(I)Pro986 3-hydroxylation with overmodification, while moderate cases retain normal 3-hydroxylation and helical modification. A Ppib-/- mouse shows slower folding (consistent with a rate-limiting role) yet cyclosporine A causes further delay, implying an additional collagen PPIase. The true rate-limiting determinant and the basis of the genotype-biochemistry-phenotype heterogeneity remain unresolved.
Posed 2026-06-30T00:00:00Z
Show evidence (2 references)
PMID:25007323 SUPPORT Human Clinical
"Two moderately severe cases have normal α1(I) Pro986 3-hydroxylation, suggesting that the CRTAP/P3H1 complex can function in the total absence of CyPB."
Documents the biochemical heterogeneity (normal 3-hydroxylation despite absent CyPB) that motivates this knowledge gap.
PMID:24968150 SUPPORT Model Organism
"Collagen folds more slowly in the absence of CyPB, supporting its rate-limiting role in folding. However, treatment of KO cells with cyclosporine A causes further delay in folding, indicating the potential existence of another collagen PPIase."
Model-organism evidence that CyPB contributes to but is not the sole rate-limiting PPIase for collagen folding, supporting the open question.

Pathophysiology

3
PPIB Loss Eliminates Cyclophilin B from the ER Collagen Prolyl 3-Hydroxylation Complex
PPIB encodes cyclophilin B (CyPB), a peptidyl-prolyl cis-trans isomerase that, with cartilage-associated protein (CRTAP) and prolyl 3-hydroxylase 1 (P3H1), forms the 1:1:1 endoplasmic-reticulum complex that 3-hydroxylates alpha1(I)Pro986 of type I collagen, isomerizes prolyl peptide bonds, and chaperones collagen folding. Biallelic loss-of-function PPIB variants eliminate CyPB. Unlike CRTAP and P3H1 (which mutually stabilize each other), CyPB stability is independent of the other two subunits, although PPIB-null cells show moderately reduced CRTAP and P3H1 levels. The same complex underlies the closely related recessive OI types VII (CRTAP) and VIII (P3H1).
osteoblast CL:0000062 fibroblast CL:0000057
protein peptidyl-prolyl isomerization GO:0000413 ↓ DECREASED
Show evidence (2 references)
PMID:19781681 SUPPORT Human Clinical
"CRTAP, P3H1, and cyclophilin B (CyPB) form an intracellular collagen-modifying complex that 3-hydroxylates proline at position 986 (P986) in the alpha1 chains of collagen type I."
Defines the CRTAP-P3H1-CyPB complex and its substrate; CyPB is the subunit lost in OI type IX.
PMID:25007323 SUPPORT Human Clinical
"CyPB is ubiquitously expressed and its stability is independent of CRTAP/P3H1. PPIB-null cells, however, have moderately reduced CRTAP and P3H1 protein levels, suggesting CyPB provides some support to the complex"
Documents that CyPB stability is independent of CRTAP/P3H1 (distinguishing type IX from types VII/VIII) while still partially supporting the complex.
Impaired Procollagen Chain Association and Collagen Folding
CyPB has been considered the major PPIase catalyzing the rate-limiting cis-trans isomerization step of collagen triple-helix folding, but its loss also impairs folding of the C-terminal propeptide and proalpha chain association into trimers. In severely affected PPIB-deficient cells, proalpha1(I) chains assemble slowly into trimers and abnormal procollagen accumulates in the rough ER, binding protein disulfide isomerase (PDI) and prolyl 4-hydroxylase 1 (P4H1), with collagen overmodification. The biochemical consequences are heterogeneous across patients, however: some cases retain normal alpha1(I)Pro986 3-hydroxylation and normal helical modification, indicating that another PPIase can partly substitute for CyPB and that the primary lesion is loss of CyPB folding/chaperone function rather than loss of 3-hydroxylation.
fibroblast CL:0000057 osteoblast CL:0000062
protein folding GO:0006457 ⚠ ABNORMAL collagen biosynthetic process GO:0032964 ⚠ ABNORMAL
Show evidence (3 references)
PMID:21282188 SUPPORT In Vitro
"Proα1(I) chains are slow to assemble into trimers, and abnormal procollagen molecules concentrate in the RER, and bind to protein disulfide isomerase (PDI) and prolyl 4-hydroxylase 1 (P4H1)."
Documents delayed procollagen chain assembly and ER accumulation in PPIB-deficient patient fibroblasts, implicating CyPB in chain association and folding.
PMID:21282188 SUPPORT In Vitro
"These findings suggest that prolyl cis-trans isomerase may be required to effectively fold the proline-rich regions of the C-terminal propeptide to allow proα chain association"
Identifies a role for CyPB beyond helix isomerization — in C-propeptide folding required for chain association.
PMID:20089953 PARTIAL Human Clinical
"The proband's collagen had normal collagen folding and normal prolyl 3-hydroxylation, suggesting that CyPB is not the exclusive peptidyl-prolyl cis-trans isomerase that catalyzes the rate-limiting step in collagen folding, as is currently thought."
Documents the contrasting biochemical phenotype (normal folding and 3-hydroxylation) in a moderate CyPB-deficient case, showing the consequences of CyPB loss are heterogeneous.
Defective Bone Matrix, Reduced Bone Mass, and Skeletal Fragility
Loss of CyPB alters collagen lysyl hydroxylation, glycosylation, and crosslinking and impairs collagen deposition and fibril structure, producing a defective bone extracellular matrix with reduced bone mass and mechanical strength. Clinically this manifests as low bone mineral density, recurrent fractures, growth deficiency, and long-bone bowing/deformity, ranging from perinatally lethal to moderately severe disease. A cyclophilin B knockout (Ppib-/-) mouse recapitulates the OI phenotype.
osteoblast CL:0000062 chondrocyte CL:0000138
bone mineralization GO:0030282 ↓ DECREASED ossification GO:0001503 ⚠ ABNORMAL
Show evidence (2 references)
PMID:24968150 SUPPORT Model Organism
"Knock-out (KO) mice are small, with reduced femoral areal bone mineral density (aBMD), bone volume per total volume (BV/TV) and mechanical properties, as well as increased femoral brittleness."
The Ppib-/- mouse recapitulates the reduced bone mass, impaired mechanics, and brittleness of OI type IX.
PMID:24968150 SUPPORT Model Organism
"The altered crosslink pattern was associated with decreased collagen deposition into matrix in culture, altered fibril structure in tissue, and reduced bone strength."
Links the CyPB-dependent collagen crosslinking/modification defect to a defective bone matrix and reduced bone strength.

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence and cross-linked metadata.
Pathograph: causal mechanism network for Osteogenesis Imperfecta Type IX Interactive directed graph showing how pathophysiology mechanisms, phenotypes, genetic factors and variants, experimental models, environmental triggers, and treatments relate through causal and linked edges.

Phenotypes

12
Ear 1
Sensorineural Hearing Impairment Sensorineural hearing impairment HP:0000407
Show evidence (1 reference)
PMID:27625864 PARTIAL Human Clinical
"She also had significant bilateral sensorineural hearing loss."
Documents bilateral sensorineural hearing loss in a molecularly confirmed OI type IX patient; the report notes hearing loss may be an inconsistent feature.
Head and Neck 1
Triangular Face Triangular face HP:0000325
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"triangular facies with a high-bossed forehead, and proptosis"
Documents the triangular facial gestalt (with frontal bossing and proptosis) in a molecularly confirmed OI type IX patient.
Limbs 1
Bowing of the Long Bones Bowing of the long bones HP:0006487
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"Skeletal radiographs obtained when she was a newborn revealed osteoporotic long bones, with undertubulation and bowing of the femora and tibiae"
Documents long-bone bowing and undertubulation in an OI type IX patient.
Musculoskeletal 5
Recurrent Fractures Recurrent fractures HP:0002757
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"Patients who lack CyPB, a condition that we propose to designate as type IX osteogenesis imperfecta, have low bone mass and multiple long-bone fractures, requiring osteotomy and placement of intramedullary rods, but attain ambulation."
Documents multiple long-bone fractures as a defining clinical feature of OI type IX.
Reduced Bone Mineral Density Reduced bone mineral density HP:0004349
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"Patients who lack CyPB, a condition that we propose to designate as type IX osteogenesis imperfecta, have low bone mass and multiple long-bone fractures, requiring osteotomy and placement of intramedullary rods, but attain ambulation."
Documents low bone mass (reduced bone mineral density) in OI type IX.
Vertebral Compression Fracture Vertebral compression fracture HP:0002953
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"the vertebral bodies of T11 through L2 showed substantial anterior compression"
Documents substantial anterior vertebral compression in an OI type IX patient in early childhood.
Joint Hypermobility Joint hypermobility HP:0001382
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"She had generalized, moderate ligamentous laxity, triangular facies with a high-bossed forehead, and proptosis."
Documents generalized ligamentous laxity (joint hypermobility) in a molecularly confirmed OI type IX patient; the affected sibling likewise had generalized, moderate ligamentous laxity.
Hypotonia Hypotonia HP:0001252
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"Gross motor development was moderately delayed, owing to low muscle tone and weakness"
Documents low muscle tone (hypotonia) and weakness in molecularly confirmed OI type IX siblings.
Nervous System 1
Motor Delay Motor delay HP:0001270
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"Gross motor development was moderately delayed, owing to low muscle tone and weakness"
Documents moderately delayed gross motor development in molecularly confirmed OI type IX siblings.
Respiratory 1
Respiratory Insufficiency Respiratory insufficiency HP:0002093
Severity: SEVERE
Show evidence (1 reference)
PMID:27625864 SUPPORT Human Clinical
"She had significant respiratory disease at birth, and required oxygen throughout her life."
Documents oxygen-dependent respiratory disease from birth in a severe, molecularly confirmed OI type IX patient who died of recurrent pneumonia in infancy.
Growth 2
Growth Deficiency Growth delay HP:0001510
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"Although they had moderate axial growth deficiency, their hand length and segmental proportions were appropriate for their age."
Documents moderate axial growth deficiency in CyPB-deficient OI type IX, without the rhizomelia/extreme growth failure of types VII/VIII.
Rhizomelia Rhizomelia HP:0008905
Show evidence (1 reference)
PMID:27625864 SUPPORT Human Clinical
"Long bones were shortened with significant rhizomelia."
Documents significant rhizomelia in a severe, molecularly confirmed OI type IX patient, supporting rhizomelia as a feature of severe cases.
🧬

Genetic Associations

1
PPIB (Cyclophilin B) Loss-of-Function Mutations (Causative)
Gene: PPIB (peptidylprolyl isomerase B; cyclophilin B) hgnc:9255
Show evidence (3 references)
PMID:20089953 SUPPORT Human Clinical
"They had a homozygous start-codon mutation in the peptidyl-prolyl isomerase B gene (PPIB), which results in a lack of cyclophilin B (CyPB), the third component of the complex."
Documents a homozygous PPIB start-codon mutation eliminating CyPB as the cause of OI type IX.
PMID:28242392 SUPPORT Human Clinical
"Two novel heterozygous PPIB mutations (father, c.25A>G; mother, c.509G>A) were identified in relation to osteogenesis imperfecta type IX."
Reports additional pathogenic PPIB alleles segregating in a recessive OI type IX pedigree.
PMID:34659339 SUPPORT Human Clinical
"We identified a homozygous missense variant c.509G > A/p.G170D in PPIB in an affected fetus. This variant is a Chinese-specific allele and can now be classified as pathogenic."
Documents a recurrent Chinese-specific founder PPIB missense allele (c.509G>A/p.G170D) causing OI type IX.
💊

Medical Actions

3
Bisphosphonate Therapy
Action: Bisphosphonate Therapy NCIT:C198585
Intravenous bisphosphonates (e.g., pamidronate, zoledronic acid) are the pharmacological mainstay of severe OI management, increasing bone mineral density and reducing fracture frequency. They are antiresorptive and do not correct the underlying collagen defect.
Show evidence (1 reference)
PMID:20301472 SUPPORT Human Clinical
"Bisphosphonates continue to be used most extensively in those with vertebral fractures, frequent long bone fractures, or more severe OI."
GeneReviews documents bisphosphonates as the mainstay pharmacotherapy for OI with frequent fractures or severe disease, the management category that applies to OI type IX.
Orthopedic Surgery and Intramedullary Rodding
Action: surgical procedure MAXO:0000004
Intramedullary (telescoping) rod fixation and corrective osteotomy stabilize fracture-prone, deformed long bones; OI type IX patients commonly require osteotomy and rodding yet attain ambulation.
Show evidence (1 reference)
PMID:20089953 SUPPORT Human Clinical
"Patients who lack CyPB, a condition that we propose to designate as type IX osteogenesis imperfecta, have low bone mass and multiple long-bone fractures, requiring osteotomy and placement of intramedullary rods, but attain ambulation."
Documents osteotomy and intramedullary rodding as standard orthopedic management in OI type IX.
Physical Therapy and Rehabilitation
Action: physical therapy MAXO:0000011
Physiotherapy maintains mobility and muscle strength and reduces fracture risk; fractures are managed with brief immobilization and early rehabilitation, with mobility aids and orthotics as needed.
Show evidence (1 reference)
PMID:20301472 SUPPORT Human Clinical
"Fractures are treated with as short a period of immobility as is practical, small and lightweight casts, and physical therapy as soon as casts are removed"
GeneReviews documents early physical therapy and brief immobilization as part of standard OI fracture rehabilitation.
{ }

Source YAML

click to show
name: Osteogenesis Imperfecta Type IX
creation_date: "2026-06-30T00:00:00Z"
category: Mendelian
disease_term:
  preferred_term: Osteogenesis imperfecta type 9
  term:
    id: MONDO:0009805
    label: osteogenesis imperfecta type 9
description: >-
  Osteogenesis imperfecta type IX (OI type IX) is a rare autosomal recessive
  brittle bone disease caused by biallelic loss-of-function variants in PPIB,
  the gene encoding cyclophilin B (CyPB), a peptidyl-prolyl cis-trans isomerase
  (PPIase) of the endoplasmic reticulum. CyPB is the third member of the ER
  collagen prolyl 3-hydroxylation complex it forms in 1:1:1 proportion with
  cartilage-associated protein (CRTAP, deficient in OI type VII) and prolyl
  3-hydroxylase 1 (P3H1, deficient in OI type VIII); the complex 3-hydroxylates
  a single proline of type I collagen (alpha1(I)Pro986), has peptidyl-prolyl
  cis-trans isomerase activity, and acts as a collagen chaperone. The reported
  phenotype spans perinatally lethal to moderately severe OI with low bone mass,
  recurrent fractures, growth deficiency, and long-bone bowing/deformity.
  Mechanistically, OI type IX is distinctive among the recessive
  3-hydroxylation-complex OI types: CyPB stability is independent of CRTAP/P3H1,
  and the biochemical consequences of its loss are heterogeneous — some severe
  cases show reduced alpha1(I)Pro986 3-hydroxylation with collagen
  overmodification, whereas other (moderate) cases retain normal 3-hydroxylation
  and normal helical modification. Rhizomelia, a hallmark of types VII/VIII, is
  variable and severity-dependent in type IX — typically absent in the moderate
  cases, while a rhizomelic trend is reported in severe/lethal cases. Together
  with the heterogeneous biochemistry, the dominant
  lesion is loss of the CyPB folding/isomerase and chain-association function
  rather than loss of the 3-hydroxylation modification per se, and that CyPB is
  not the unique rate-limiting PPIase for collagen folding in vivo.
parents:
- Osteogenesis imperfecta
inheritance:
- name: Autosomal Recessive
  description: >-
    Autosomal recessive inheritance from biallelic loss-of-function PPIB
    variants; heterozygous carriers are clinically unaffected.
  inheritance_term:
    preferred_term: Autosomal recessive inheritance
    term:
      id: HP:0000007
      label: Autosomal recessive inheritance
  evidence:
  - reference: PMID:19781681
    reference_title: "PPIB mutations cause severe osteogenesis imperfecta."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      To our knowledge we present the first two families with recessive OI
      caused by PPIB gene mutations.
    explanation: >-
      Establishes the autosomal recessive inheritance of OI type IX from
      biallelic PPIB mutations.
  - reference: PMID:28242392
    reference_title: "Two novel mutations in the PPIB gene cause a rare pedigree of osteogenesis imperfecta type IX."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We report a rare pedigree with an autosomal recessive osteogenesis
      imperfecta type IX (OI-IX) caused by two novel PPIB mutations
    explanation: >-
      Independent pedigree confirming autosomal recessive OI type IX from
      biallelic PPIB mutations.
prevalence:
- population: General (worldwide); Chinese population estimate
  notes: >-
    OI type IX is very rare, with only a small number of families reported
    worldwide. A founder analysis in the Chinese population estimated the
    incidence at approximately 1 in 1,000,000.
  evidence:
  - reference: PMID:34659339
    reference_title: "A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      the conserved estimation of OI type IX incidence to be 1/1,000,000 in
      Chinese population
    explanation: >-
      Provides a population-level incidence estimate for OI type IX in the
      Chinese population.
pathophysiology:
- name: PPIB Loss Eliminates Cyclophilin B from the ER Collagen Prolyl 3-Hydroxylation Complex
  description: >-
    PPIB encodes cyclophilin B (CyPB), a peptidyl-prolyl cis-trans isomerase
    that, with cartilage-associated protein (CRTAP) and prolyl 3-hydroxylase 1
    (P3H1), forms the 1:1:1 endoplasmic-reticulum complex that 3-hydroxylates
    alpha1(I)Pro986 of type I collagen, isomerizes prolyl peptide bonds, and
    chaperones collagen folding. Biallelic loss-of-function PPIB variants
    eliminate CyPB. Unlike CRTAP and P3H1 (which mutually stabilize each other),
    CyPB stability is independent of the other two subunits, although PPIB-null
    cells show moderately reduced CRTAP and P3H1 levels. The same complex
    underlies the closely related recessive OI types VII (CRTAP) and VIII
    (P3H1).
  cell_types:
  - preferred_term: osteoblast
    term:
      id: CL:0000062
      label: osteoblast
  - preferred_term: fibroblast
    term:
      id: CL:0000057
      label: fibroblast
  biological_processes:
  - preferred_term: protein peptidyl-prolyl isomerization
    term:
      id: GO:0000413
      label: protein peptidyl-prolyl isomerization
    modifier: DECREASED
  evidence:
  - reference: PMID:19781681
    reference_title: "PPIB mutations cause severe osteogenesis imperfecta."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      CRTAP, P3H1, and cyclophilin B (CyPB) form an intracellular
      collagen-modifying complex that 3-hydroxylates proline at position 986
      (P986) in the alpha1 chains of collagen type I.
    explanation: >-
      Defines the CRTAP-P3H1-CyPB complex and its substrate; CyPB is the subunit
      lost in OI type IX.
  - reference: PMID:25007323
    reference_title: "Osteogenesis imperfecta due to mutations in non-collagenous genes: lessons in the biology of bone formation."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      CyPB is ubiquitously expressed and its stability is independent of
      CRTAP/P3H1. PPIB-null cells, however, have moderately reduced CRTAP and
      P3H1 protein levels, suggesting CyPB provides some support to the complex
    explanation: >-
      Documents that CyPB stability is independent of CRTAP/P3H1 (distinguishing
      type IX from types VII/VIII) while still partially supporting the complex.
  downstream:
  - target: Impaired Procollagen Chain Association and Collagen Folding
    description: >-
      Loss of the CyPB isomerase/chaperone slows procollagen chain association
      and triple-helix folding.
- name: Impaired Procollagen Chain Association and Collagen Folding
  description: >-
    CyPB has been considered the major PPIase catalyzing the rate-limiting
    cis-trans isomerization step of collagen triple-helix folding, but its loss
    also impairs folding of the C-terminal propeptide and proalpha chain
    association into trimers. In severely affected PPIB-deficient cells,
    proalpha1(I) chains assemble slowly into trimers and abnormal procollagen
    accumulates in the rough ER, binding protein disulfide isomerase (PDI) and
    prolyl 4-hydroxylase 1 (P4H1), with collagen overmodification. The
    biochemical consequences are heterogeneous across patients, however: some
    cases retain normal alpha1(I)Pro986 3-hydroxylation and normal helical
    modification, indicating that another PPIase can partly substitute for CyPB
    and that the primary lesion is loss of CyPB folding/chaperone function rather
    than loss of 3-hydroxylation.
  cell_types:
  - preferred_term: fibroblast
    term:
      id: CL:0000057
      label: fibroblast
  - preferred_term: osteoblast
    term:
      id: CL:0000062
      label: osteoblast
  biological_processes:
  - preferred_term: protein folding
    term:
      id: GO:0006457
      label: protein folding
    modifier: ABNORMAL
  - preferred_term: collagen biosynthetic process
    term:
      id: GO:0032964
      label: collagen biosynthetic process
    modifier: ABNORMAL
  evidence:
  - reference: PMID:21282188
    reference_title: "Mutations in PPIB (cyclophilin B) delay type I procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      Proα1(I) chains are slow to assemble into trimers, and abnormal
      procollagen molecules concentrate in the RER, and bind to protein
      disulfide isomerase (PDI) and prolyl 4-hydroxylase 1 (P4H1).
    explanation: >-
      Documents delayed procollagen chain assembly and ER accumulation in
      PPIB-deficient patient fibroblasts, implicating CyPB in chain association
      and folding.
  - reference: PMID:21282188
    reference_title: "Mutations in PPIB (cyclophilin B) delay type I procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      These findings suggest that prolyl cis-trans isomerase may be required to
      effectively fold the proline-rich regions of the C-terminal propeptide to
      allow proα chain association
    explanation: >-
      Identifies a role for CyPB beyond helix isomerization — in C-propeptide
      folding required for chain association.
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: PARTIAL
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      The proband's collagen had normal collagen folding and normal prolyl
      3-hydroxylation, suggesting that CyPB is not the exclusive
      peptidyl-prolyl cis-trans isomerase that catalyzes the rate-limiting step
      in collagen folding, as is currently thought.
    explanation: >-
      Documents the contrasting biochemical phenotype (normal folding and
      3-hydroxylation) in a moderate CyPB-deficient case, showing the
      consequences of CyPB loss are heterogeneous.
  downstream:
  - target: Defective Bone Matrix, Reduced Bone Mass, and Skeletal Fragility
    description: >-
      Abnormal collagen folding, modification, and crosslinking yield a
      defective bone matrix with reduced bone mass and mechanical strength.
- name: Defective Bone Matrix, Reduced Bone Mass, and Skeletal Fragility
  description: >-
    Loss of CyPB alters collagen lysyl hydroxylation, glycosylation, and
    crosslinking and impairs collagen deposition and fibril structure, producing
    a defective bone extracellular matrix with reduced bone mass and mechanical
    strength. Clinically this manifests as low bone mineral density, recurrent
    fractures, growth deficiency, and long-bone bowing/deformity, ranging from
    perinatally lethal to moderately severe disease. A cyclophilin B knockout
    (Ppib-/-) mouse recapitulates the OI phenotype.
  cell_types:
  - preferred_term: osteoblast
    term:
      id: CL:0000062
      label: osteoblast
  - preferred_term: chondrocyte
    term:
      id: CL:0000138
      label: chondrocyte
  biological_processes:
  - preferred_term: bone mineralization
    term:
      id: GO:0030282
      label: bone mineralization
    modifier: DECREASED
  - preferred_term: ossification
    term:
      id: GO:0001503
      label: ossification
    modifier: ABNORMAL
  evidence:
  - reference: PMID:24968150
    reference_title: "Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: >-
      Knock-out (KO) mice are small, with reduced femoral areal bone mineral
      density (aBMD), bone volume per total volume (BV/TV) and mechanical
      properties, as well as increased femoral brittleness.
    explanation: >-
      The Ppib-/- mouse recapitulates the reduced bone mass, impaired mechanics,
      and brittleness of OI type IX.
  - reference: PMID:24968150
    reference_title: "Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: >-
      The altered crosslink pattern was associated with decreased collagen
      deposition into matrix in culture, altered fibril structure in tissue, and
      reduced bone strength.
    explanation: >-
      Links the CyPB-dependent collagen crosslinking/modification defect to a
      defective bone matrix and reduced bone strength.
genetic:
- name: PPIB (Cyclophilin B) Loss-of-Function Mutations
  association: Causative
  gene_term:
    preferred_term: PPIB (peptidylprolyl isomerase B; cyclophilin B)
    term:
      id: hgnc:9255
      label: PPIB
  notes: >-
    Biallelic loss-of-function variants in PPIB on chromosome 15q22.31 cause OI
    type IX. Reported alleles include start-codon (c.2T>G), nonsense, frameshift,
    splice-site, and missense variants that abolish or downregulate cyclophilin
    B. OI type IX is rare, with only a small number of families reported
    worldwide.
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      They had a homozygous start-codon mutation in the peptidyl-prolyl
      isomerase B gene (PPIB), which results in a lack of cyclophilin B (CyPB),
      the third component of the complex.
    explanation: >-
      Documents a homozygous PPIB start-codon mutation eliminating CyPB as the
      cause of OI type IX.
  - reference: PMID:28242392
    reference_title: "Two novel mutations in the PPIB gene cause a rare pedigree of osteogenesis imperfecta type IX."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Two novel heterozygous PPIB mutations (father, c.25A>G; mother, c.509G>A)
      were identified in relation to osteogenesis imperfecta type IX.
    explanation: >-
      Reports additional pathogenic PPIB alleles segregating in a recessive OI
      type IX pedigree.
  - reference: PMID:34659339
    reference_title: "A Founder Pathogenic Variant of PPIB Unique to Chinese Population Causes Osteogenesis Imperfecta IX."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We identified a homozygous missense variant c.509G > A/p.G170D in PPIB in
      an affected fetus. This variant is a Chinese-specific allele and can now be
      classified as pathogenic.
    explanation: >-
      Documents a recurrent Chinese-specific founder PPIB missense allele
      (c.509G>A/p.G170D) causing OI type IX.
phenotypes:
- name: Recurrent Fractures
  description: >-
    Bone fragility with multiple long-bone fractures, frequently beginning in
    infancy and recurring, often requiring orthopedic intervention.
  phenotype_term:
    preferred_term: Recurrent fractures
    term:
      id: HP:0002757
      label: Recurrent fractures
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Patients who lack CyPB, a condition that we propose to designate as type
      IX osteogenesis imperfecta, have low bone mass and multiple long-bone
      fractures, requiring osteotomy and placement of intramedullary rods, but
      attain ambulation.
    explanation: >-
      Documents multiple long-bone fractures as a defining clinical feature of
      OI type IX.
- name: Reduced Bone Mineral Density
  description: >-
    Low bone mass with reduced bone mineral density; DXA Z-scores are reduced,
    though typically less severely than in OI types VII and VIII.
  phenotype_term:
    preferred_term: Reduced bone mineral density
    term:
      id: HP:0004349
      label: Reduced bone mineral density
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Patients who lack CyPB, a condition that we propose to designate as type
      IX osteogenesis imperfecta, have low bone mass and multiple long-bone
      fractures, requiring osteotomy and placement of intramedullary rods, but
      attain ambulation.
    explanation: >-
      Documents low bone mass (reduced bone mineral density) in OI type IX.
- name: Growth Deficiency
  description: >-
    Growth deficiency ranging from moderate axial growth deficiency in milder
    cases to severe growth failure in severe/lethal cases. Notably, the extreme
    growth failure and rhizomelia characteristic of types VII/VIII are typically
    absent in moderate CyPB-deficient cases.
  phenotype_term:
    preferred_term: Growth delay
    term:
      id: HP:0001510
      label: Growth delay
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Although they had moderate axial growth deficiency, their hand length and
      segmental proportions were appropriate for their age.
    explanation: >-
      Documents moderate axial growth deficiency in CyPB-deficient OI type IX,
      without the rhizomelia/extreme growth failure of types VII/VIII.
- name: Bowing of the Long Bones
  description: >-
    Bowing and deformity of the long bones (e.g., femora and tibiae) with
    undertubulation, reflecting the fragile, deformable bone matrix.
  phenotype_term:
    preferred_term: Bowing of the long bones
    term:
      id: HP:0006487
      label: Bowing of the long bones
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Skeletal radiographs obtained when she was a newborn revealed osteoporotic
      long bones, with undertubulation and bowing of the femora and tibiae
    explanation: >-
      Documents long-bone bowing and undertubulation in an OI type IX patient.
- name: Rhizomelia
  description: >-
    Rhizomelic (proximal) limb shortening is variable and severity-dependent in
    OI type IX: typically absent in moderate cases but reported, sometimes
    prominently, in severe/lethal cases (in contrast to its consistent presence
    in types VII/VIII).
  phenotype_term:
    preferred_term: Rhizomelia
    term:
      id: HP:0008905
      label: Rhizomelia
  evidence:
  - reference: PMID:27625864
    reference_title: "Osteogenesis imperfecta caused by PPIB mutation with severe phenotype and congenital hearing loss."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Long bones were shortened with significant rhizomelia.
    explanation: >-
      Documents significant rhizomelia in a severe, molecularly confirmed OI
      type IX patient, supporting rhizomelia as a feature of severe cases.
- name: Vertebral Compression Fracture
  description: >-
    Vertebral body compression develops in OI type IX, reflecting the fragile,
    low-density bone of the axial skeleton; anterior vertebral compression has
    been documented in early childhood.
  phenotype_term:
    preferred_term: Vertebral compression fracture
    term:
      id: HP:0002953
      label: Vertebral compression fracture
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      the vertebral bodies of T11 through L2 showed substantial anterior
      compression
    explanation: >-
      Documents substantial anterior vertebral compression in an OI type IX
      patient in early childhood.
- name: Sensorineural Hearing Impairment
  description: >-
    Sensorineural hearing loss has been reported in OI type IX, including
    congenital bilateral involvement in a severe case, although whether it is a
    consistent feature or an incidental finding remains uncertain given the small
    number of reported patients.
  phenotype_term:
    preferred_term: Sensorineural hearing impairment
    term:
      id: HP:0000407
      label: Sensorineural hearing impairment
  evidence:
  - reference: PMID:27625864
    reference_title: "Osteogenesis imperfecta caused by PPIB mutation with severe phenotype and congenital hearing loss."
    supports: PARTIAL
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      She also had significant bilateral sensorineural hearing loss.
    explanation: >-
      Documents bilateral sensorineural hearing loss in a molecularly confirmed
      OI type IX patient; the report notes hearing loss may be an inconsistent
      feature.
- name: Joint Hypermobility
  description: >-
    Generalized ligamentous laxity (joint hypermobility) has been documented in
    molecularly confirmed OI type IX, present in both affected siblings of the
    founding CyPB-deficient cohort. It is typically mild-to-moderate and reflects
    the connective-tissue involvement of the disorder.
  phenotype_term:
    preferred_term: Joint hypermobility
    term:
      id: HP:0001382
      label: Joint hypermobility
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      She had generalized, moderate ligamentous laxity, triangular facies with a
      high-bossed forehead, and proptosis.
    explanation: >-
      Documents generalized ligamentous laxity (joint hypermobility) in a
      molecularly confirmed OI type IX patient; the affected sibling likewise had
      generalized, moderate ligamentous laxity.
- name: Respiratory Insufficiency
  description: >-
    Respiratory compromise is a major clinical feature of severe/lethal OI type
    IX, driven by rib fractures, a narrow thorax, and pulmonary infection, and is
    the leading cause of death in the most severely affected patients.
  phenotype_term:
    preferred_term: Respiratory insufficiency
    term:
      id: HP:0002093
      label: Respiratory insufficiency
    severity: SEVERE
  evidence:
  - reference: PMID:27625864
    reference_title: "Osteogenesis imperfecta caused by PPIB mutation with severe phenotype and congenital hearing loss."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      She had significant respiratory disease at birth, and required oxygen
      throughout her life.
    explanation: >-
      Documents oxygen-dependent respiratory disease from birth in a severe,
      molecularly confirmed OI type IX patient who died of recurrent pneumonia in
      infancy.
- name: Triangular Face
  description: >-
    A characteristic craniofacial gestalt with triangular facies, a high-bossed
    (prominent) forehead, and proptosis has been documented in molecularly
    confirmed OI type IX.
  phenotype_term:
    preferred_term: Triangular face
    term:
      id: HP:0000325
      label: Triangular face
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      triangular facies with a high-bossed forehead, and proptosis
    explanation: >-
      Documents the triangular facial gestalt (with frontal bossing and
      proptosis) in a molecularly confirmed OI type IX patient.
- name: Motor Delay
  description: >-
    Gross motor development is moderately delayed in OI type IX, reflecting both
    the burden of recurrent fractures/deformity and coexisting low muscle tone and
    weakness; affected children nonetheless attain ambulation.
  phenotype_term:
    preferred_term: Motor delay
    term:
      id: HP:0001270
      label: Motor delay
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Gross motor development was moderately delayed, owing to low muscle tone and
      weakness
    explanation: >-
      Documents moderately delayed gross motor development in molecularly
      confirmed OI type IX siblings.
- name: Hypotonia
  description: >-
    Low muscle tone and weakness accompany OI type IX and contribute to the
    delayed gross motor development observed in affected children.
  phenotype_term:
    preferred_term: Muscular hypotonia
    term:
      id: HP:0001252
      label: Hypotonia
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Gross motor development was moderately delayed, owing to low muscle tone and
      weakness
    explanation: >-
      Documents low muscle tone (hypotonia) and weakness in molecularly confirmed
      OI type IX siblings.
diagnosis:
- name: Clinical, Biochemical, and Molecular Diagnosis
  description: >-
    OI type IX is suspected in an infant or child with recessive OI, low bone
    mass, and recurrent fractures, particularly when COL1A1/COL1A2, CRTAP, and
    LEPRE1 (P3H1) testing is negative. Biochemical collagen analysis of cultured
    fibroblasts is variable — it may show delayed collagen folding with
    overmodification in severe cases or near-normal folding and 3-hydroxylation
    in moderate cases — so diagnosis rests on identifying biallelic PPIB variants
    by gene-panel or exome sequencing, distinguishing it from the closely similar
    CRTAP (type VII) and P3H1 (type VIII) forms. Notably, molecularly confirmed
    cases characteristically have white sclerae and normal dentition — that is,
    the blue sclerae and dentinogenesis imperfecta common in type I
    collagen-related OI are typically absent — a feature CyPB-deficient OI shares
    with the CRTAP/P3H1 recessive forms.
  diagnosis_term:
    preferred_term: molecular genetic testing
    term:
      id: MAXO:0000533
      label: molecular genetic testing
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      They had a homozygous start-codon mutation in the peptidyl-prolyl
      isomerase B gene (PPIB), which results in a lack of cyclophilin B (CyPB),
      the third component of the complex.
    explanation: >-
      Molecular identification of biallelic PPIB variants establishes the
      diagnosis of OI type IX.
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Both siblings had white sclerae and normal dentition, which are also found
      in patients with P3H1 or CRTAP deficiency.
    explanation: >-
      Documents that confirmed OI type IX cases characteristically have white
      sclerae and normal dentition (blue sclerae and dentinogenesis imperfecta
      absent), a distinguishing feature shared with the CRTAP/P3H1 recessive
      forms.
treatments:
- name: Bisphosphonate Therapy
  description: >-
    Intravenous bisphosphonates (e.g., pamidronate, zoledronic acid) are the
    pharmacological mainstay of severe OI management, increasing bone mineral
    density and reducing fracture frequency. They are antiresorptive and do not
    correct the underlying collagen defect.
  treatment_term:
    preferred_term: Bisphosphonate Therapy
    term:
      id: NCIT:C198585
      label: Bisphosphonate Therapy
  evidence:
  - reference: PMID:20301472
    reference_title: "COL1A1- and COL1A2-Related Osteogenesis Imperfecta."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Bisphosphonates continue to be used most extensively in those with
      vertebral fractures, frequent long bone fractures, or more severe OI.
    explanation: >-
      GeneReviews documents bisphosphonates as the mainstay pharmacotherapy for
      OI with frequent fractures or severe disease, the management category that
      applies to OI type IX.
- name: Orthopedic Surgery and Intramedullary Rodding
  description: >-
    Intramedullary (telescoping) rod fixation and corrective osteotomy stabilize
    fracture-prone, deformed long bones; OI type IX patients commonly require
    osteotomy and rodding yet attain ambulation.
  treatment_term:
    preferred_term: surgical procedure
    term:
      id: MAXO:0000004
      label: surgical procedure
  evidence:
  - reference: PMID:20089953
    reference_title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Patients who lack CyPB, a condition that we propose to designate as type
      IX osteogenesis imperfecta, have low bone mass and multiple long-bone
      fractures, requiring osteotomy and placement of intramedullary rods, but
      attain ambulation.
    explanation: >-
      Documents osteotomy and intramedullary rodding as standard orthopedic
      management in OI type IX.
- name: Physical Therapy and Rehabilitation
  description: >-
    Physiotherapy maintains mobility and muscle strength and reduces fracture
    risk; fractures are managed with brief immobilization and early
    rehabilitation, with mobility aids and orthotics as needed.
  treatment_term:
    preferred_term: physical therapy
    term:
      id: MAXO:0000011
      label: physical therapy
  evidence:
  - reference: PMID:20301472
    reference_title: "COL1A1- and COL1A2-Related Osteogenesis Imperfecta."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Fractures are treated with as short a period of immobility as is
      practical, small and lightweight casts, and physical therapy as soon as
      casts are removed
    explanation: >-
      GeneReviews documents early physical therapy and brief immobilization as
      part of standard OI fracture rehabilitation.
discussions:
- discussion_id: disc_oi9_cypb_rate_limiting_ppiase
  prompt: >-
    Is cyclophilin B the unique rate-limiting peptidyl-prolyl cis-trans
    isomerase for type I collagen folding in vivo, and why are the biochemical
    consequences of its loss (3-hydroxylation, helical overmodification, folding
    rate) so heterogeneous across PPIB-deficient patients?
  kind: KNOWLEDGE_GAP
  status: OPEN
  attaches_to:
  - pathophysiology#Impaired Procollagen Chain Association and Collagen Folding
  rationale: >-
    CyPB was long considered the unique PPIase catalyzing the rate-limiting step
    of collagen folding, but human PPIB-null cases are biochemically
    discordant: lethal cases show reduced alpha1(I)Pro986 3-hydroxylation with
    overmodification, while moderate cases retain normal 3-hydroxylation and
    helical modification. A Ppib-/- mouse shows slower folding (consistent with
    a rate-limiting role) yet cyclosporine A causes further delay, implying an
    additional collagen PPIase. The true rate-limiting determinant and the basis
    of the genotype-biochemistry-phenotype heterogeneity remain unresolved.
  evidence:
  - reference: PMID:25007323
    reference_title: "Osteogenesis imperfecta due to mutations in non-collagenous genes: lessons in the biology of bone formation."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Two moderately severe cases have normal α1(I) Pro986 3-hydroxylation,
      suggesting that the CRTAP/P3H1 complex can function in the total absence of
      CyPB.
    explanation: >-
      Documents the biochemical heterogeneity (normal 3-hydroxylation despite
      absent CyPB) that motivates this knowledge gap.
  - reference: PMID:24968150
    reference_title: "Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: >-
      Collagen folds more slowly in the absence of CyPB, supporting its
      rate-limiting role in folding. However, treatment of KO cells with
      cyclosporine A causes further delay in folding, indicating the potential
      existence of another collagen PPIase.
    explanation: >-
      Model-organism evidence that CyPB contributes to but is not the sole
      rate-limiting PPIase for collagen folding, supporting the open question.
  posed_date: "2026-06-30T00:00:00Z"
datasets: []
references:
- reference: PMID:20301472
  title: "COL1A1- and COL1A2-Related Osteogenesis Imperfecta."
  tags:
  - GeneReviews
- reference: PMID:19781681
  title: "PPIB mutations cause severe osteogenesis imperfecta."
- reference: PMID:20089953
  title: "Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding."
- reference: PMID:21282188
  title: "Mutations in PPIB (cyclophilin B) delay type I procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes."
- reference: PMID:28242392
  title: "Two novel mutations in the PPIB gene cause a rare pedigree of osteogenesis imperfecta type IX."
- reference: PMID:24968150
  title: "Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta."
- reference: PMID:25007323
  title: "Osteogenesis imperfecta due to mutations in non-collagenous genes: lessons in the biology of bone formation."
📚

References & Deep Research

References

7
COL1A1- and COL1A2-Related Osteogenesis Imperfecta.
No top-level findings curated for this source.
PPIB mutations cause severe osteogenesis imperfecta.
No top-level findings curated for this source.
Lack of cyclophilin B in osteogenesis imperfecta with normal collagen folding.
No top-level findings curated for this source.
Mutations in PPIB (cyclophilin B) delay type I procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes.
No top-level findings curated for this source.
Two novel mutations in the PPIB gene cause a rare pedigree of osteogenesis imperfecta type IX.
No top-level findings curated for this source.
Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta.
No top-level findings curated for this source.
Osteogenesis imperfecta due to mutations in non-collagenous genes: lessons in the biology of bone formation.
No top-level findings curated for this source.

Deep Research

2
Claude Code
Osteogenesis Imperfecta Type IX — Comprehensive Research Report
claude-haiku-4-5-20251001, claude-sonnet-4-6 12 citations 2026-06-30T06:47:43.962084

Osteogenesis Imperfecta Type IX — Comprehensive Research Report


1. Disease Information

Overview

Osteogenesis Imperfecta Type IX (OI9; OI type 9) is a rare, autosomal recessive form of brittle bone disease caused by loss-of-function variants in the PPIB gene (peptidylprolyl isomerase B), which encodes cyclophilin B (CyPB), an endoplasmic reticulum–resident peptidyl-prolyl cis-trans isomerase. OI type IX was formally delineated as a molecular subtype when Van Dijk et al. (2009) demonstrated that homozygous null mutations in PPIB cause severe-to-lethal bone fragility (PMID: 19781681). It is distinguished from other recessive OI types affecting the prolyl 3-hydroxylation complex (types VII and VIII, caused by CRTAP and LEPRE1/P3H1 mutations, respectively) primarily by the absence of rhizomelia (proximal limb shortening) and by a relatively broader phenotypic spectrum ranging from perinatal lethality to moderate deforming disease.

Key Identifiers

Resource Identifier
OMIM #259440
Orphanet ORPHA:216820
MONDO MONDO:0012978
ICD-10 Q78.0 (Osteogenesis imperfecta)
ICD-11 LD24.00
MeSH C537614
NCBITaxon 9606 (Homo sapiens)
Gene HGNC hgnc:9239 (PPIB)

Synonyms and Alternative Names

  • Osteogenesis imperfecta, type 9
  • OI9
  • Osteogenesis imperfecta due to cyclophilin B deficiency
  • PPIB-related osteogenesis imperfecta
  • Cyclophilin B-deficient osteogenesis imperfecta
  • Recessive OI type IX

Evidence Base

Information is derived from aggregated disease-level resources (OMIM, Orphanet), published molecular genetics studies, individual patient case reports, and animal model data from the Ppib-null mouse. Because OI type IX is extremely rare, the clinical literature consists primarily of small case series and individual family reports rather than large epidemiological cohorts.


2. Etiology

Disease Causal Factors

OI type IX is a monogenic disorder. It is caused exclusively by biallelic (homozygous or compound heterozygous) loss-of-function variants in PPIB (chromosome 15q22.31), the gene encoding cyclophilin B (CyPB). There are no established non-genetic causes. The disorder arises from deficiency of CyPB, which impairs post-translational modification of type I procollagen in the endoplasmic reticulum.

Genetic Risk Factors

  • Causal gene: PPIB (HGNC:9239), chromosome 15q22.31
  • Inheritance: Autosomal recessive — both copies of PPIB must be non-functional for disease to occur
  • Carrier status: Heterozygous carriers are phenotypically unaffected
  • Founder variants: A homozygous missense variant c.509G>A / p.Gly170Asp is specific to East Asian (predominantly Chinese) populations, with an allele frequency of ~0.000924 in gnomAD East Asian populations; estimated variant age ~65,160 years (PMID: 34659339)
  • Consanguinity: Described in multiple consanguineous families given the rarity of null alleles

Pathogenic Variants Reported

Variant Effect Families Reference
c.556–559delAAGA (exon 5); p.Lys186GlnfsX8 Frameshift, truncation of 31 C-terminal amino acids 1 PMID: 19781681
c.451C>T (exon 4); p.Gln151X Nonsense, removes 65 C-terminal amino acids 1 PMID: 19781681
c.136-2A>G (splice site) Likely NMD/null 1 (Native American) PMID: 27625864
c.509G>A (exon 4); p.Gly170Asp Missense, pro-isomerase domain Multiple Chinese families PMID: 34659339
Multiple additional loss-of-function variants Various null effects Multiple PMID: 21282188

Functional consequences: All reported variants result in absence or severe reduction of CyPB protein. Critically, CyPB loss is independent of its complex partners: in patient fibroblasts, P3H1 levels are substantially reduced (indicating P3H1 stability depends partially on CyPB), but CRTAP remains unaffected (PMID: 19781681).

Environmental Risk Factors

No environmental risk factors specifically modulate risk of OI type IX. As a Mendelian autosomal recessive disorder, risk is determined entirely by carrier status of parents. Advanced parental age is not a significant risk factor. Consanguinity increases the probability of biallelic inheritance in rare-allele families.

Protective Factors

No genetic protective factors have been identified that prevent disease expression once biallelic PPIB mutations are inherited. Modifier alleles affecting collagen processing could theoretically modulate severity but have not been systematically identified.


3. Phenotypes

OI type IX spans a spectrum from perinatal lethality to moderate deforming disease (PMID: 21282188). The majority of reported patients have severe-to-lethal phenotypes, but at least one molecularly confirmed patient without rhizomelia has had a moderate disease course.

Core Skeletal Phenotypes

Phenotype HPO Term Frequency Severity Notes
Recurrent bone fractures HP:0002757 Very frequent (80–100%) Severe Often begin prenatally; long bone and rib fractures at birth
Multiple prenatal fractures HP:0002813 Frequent Severe Key distinguishing feature of severe/lethal form
Osteoporosis / osteopenia HP:0000939 Very frequent Severe Dramatically reduced bone mineral density
Bone deformity / bowing of long bones HP:0002645 Frequent Moderate–severe Bowed femora and tibiae
Short stature HP:0004322 Frequent Moderate–severe Progressive growth deficiency
Kyphosis HP:0002808 Frequent Progressive Progressive spinal curvature; prominent in mouse model (PMID: 19997487)
Scoliosis HP:0002650 Frequent Progressive
Platyspondyly HP:0000926 Present Moderate Flattened vertebral bodies
Pectus deformity HP:0000768 Present Variable Narrow chest contributing to respiratory compromise
Wormian bones HP:0002645 (radiographic) Present Sutural bones on skull radiograph
Joint hypermobility HP:0001382 Present Mild Ligamentous laxity
Decreased calvarial ossification HP:0002683 Present in severe cases

Extraskeletal Phenotypes

Phenotype HPO Term Frequency Notes
Blue sclerae HP:0000592 Present (variable) Caused by abnormal scleral collagen; not consistently reported in all PPIB cases
Dentinogenesis imperfecta HP:0000703 Present (variable) Discolored, translucent, fragile teeth
Sensorineural hearing loss HP:0000407 Present (inconsistent) Congenital bilateral SNHL documented in one Native American case (PMID: 27625864); may be co-incidental in some patients
Loose/lax skin HP:0000963 Present in model Documented prominently in Ppib-KO mouse; human data limited
Respiratory compromise HP:0002093 Frequent in severe cases Secondary to narrow chest and rib fractures
Triangular face HP:0000325 Present Characteristic facial gestalt
Delayed motor development HP:0001270 Frequent Secondary to fractures and deformity
Wheelchair dependence HP:0004736 Present in severe cases One surviving patient wheelchair-dependent by age 7 (PMID: 19781681)

Clinical Distinctive Features Vs. Other Recessive OI Types

A key distinguishing phenotypic feature is the absence of rhizomelia (proximal limb shortening) in OI type IX, contrasting with OI types VII (CRTAP) and VIII (LEPRE1/P3H1), which typically show rhizomelic shortening of upper extremities. As noted for the Native American patient: "There appears to be a trend toward rhizomelic shortening and less severe bowing of the extremities, as compared to patients with comparably severe OI caused by COL1A1 or COL1A2 mutation" (PMID: 27625864)—though one case did show prenatal rhizomelia, indicating phenotypic overlap.

Hearing Loss

Hearing loss management recommendations: "Patients with OI caused by PPIB mutation should have appropriate early and regular management of their hearing" (PMID: 27625864). Whether congenital sensorineural hearing loss is a true recurrent feature of OI type IX or represents a co-incidental finding remains uncertain given limited case numbers.

Onset and Severity

  • Onset: Prenatal in severe/lethal cases (fractures visible on ultrasound in 2nd trimester); perinatal in lethal form; early postnatal in survivors
  • Severity spectrum: Perinatal lethality (Sillence type II equivalent) to severe deforming (Sillence type III equivalent) to moderate
  • Progression: Progressive deformity with growth; multiple fractures throughout childhood and potentially adulthood

4. Genetic / Molecular Information

Causal Gene

  • Gene symbol: PPIB
  • Gene full name: Peptidylprolyl isomerase B (cyclophilin B)
  • HGNC ID: hgnc:9239
  • OMIM Gene: #123841
  • Chromosome location: 15q22.31
  • Protein: Cyclophilin B (CyPB), 21 kDa
  • Alternative gene names: CYP-S1, CYPB, HEL-S-39, SCYLP

Variant Classification

All reported disease-causing variants are classified pathogenic or likely pathogenic (ACMG/AMP criteria). The founder variant p.Gly170Asp received PM3, PM1 (change at pro-isomerase domain), and PP3 (REVEL score 0.94) evidence codes (PMID: 34659339).

Variant types reported: - Nonsense (PTC) - Frameshift (deletion) - Splice-site - Missense (affecting pro-isomerase domain)

All result in loss of function. Biochemical studies consistently reveal undetectable CyPB protein in patient fibroblasts from families with frameshift/nonsense mutations (PMID: 19781681).

Allele Frequency

  • The c.509G>A / p.Gly170Asp Chinese founder allele frequency in gnomAD: 0.000924 in East Asian populations; absent in non-East Asian populations (PMID: 34659339)
  • Other pathogenic alleles are extremely rare, below gnomAD detection thresholds or absent

Somatic vs. Germline

OI type IX is exclusively a germline disorder. Somatic mosaicism is theoretically possible but has not been documented in published literature.

Modifier Genes

No confirmed modifier genes have been described for OI type IX specifically. In the broader OI context, variants in BMP1, PLOD2, IFITM5, and other collagen-modifying genes have been considered modifiers, but these have not been specifically studied in PPIB-null disease.

Chromosomal Abnormalities

Not applicable; OI type IX is a point mutation / small insertion-deletion disorder without large-scale chromosomal changes.


5. Environmental Information

Environmental Factors

No specific environmental toxins, radiation, or occupational exposures are known to cause or exacerbate the molecular defect in OI type IX. As with all OI, secondary fracture risk may be modulated by environmental factors including fall risk, activity level, and calcium/vitamin D nutrition, but these do not alter the underlying genetic defect.

Lifestyle Factors

  • Calcium and vitamin D supplementation are standard supportive measures for all OI patients
  • Exercise programs (especially swimming, low-impact activities) are recommended to build muscle strength and improve mobility
  • Contact sports are generally contraindicated

Infectious Agents

Respiratory infections are a significant complication (not cause) in patients with severe thoracic involvement. The Native American patient with lethal OI IX died at age 16 months from pneumonia (PMID: 27625864). Recurrent respiratory infections are a major source of morbidity in the severe phenotype.


6. Mechanism / Pathophysiology

The Prolyl 3-Hydroxylation Complex

The central pathophysiological mechanism in OI type IX is deficiency of cyclophilin B (CyPB), disrupting multiple post-translational modification steps of type I collagen in the endoplasmic reticulum.

CyPB (PPIB) functions as a component of a heterotrimeric complex with: 1. P3H1 (prolyl 3-hydroxylase 1, encoded by LEPRE1/P3H1) — the enzymatic hydroxylase 2. CRTAP (cartilage-associated protein) — structural scaffolding

This complex performs the 3-hydroxylation of proline at position 986 (P986) in the α1(I) chain of type I collagen — a modification essential for normal collagen fibril structure and bone mechanical properties.

Molecular functions of CyPB: - Peptidyl-prolyl cis-trans isomerase (PPIase) activity: CyPB is proposed to be the major PPIase catalyzing the rate-limiting step in collagen triple-helix formation, catalyzing cis-to-trans isomerization of proline imidic peptide bonds (proline constitutes ~20% of collagen residues) - Chaperone function: CyPB participates in ER chaperone complexes with BiP, GRP94, PDI, and calreticulin - Complex stabilization: CyPB is required for proper P3H1 retention/stability in cells; loss of CyPB leads to substantial reduction of P3H1 levels in patient fibroblasts

Collagen Modification Defects

Prolyl-3 hydroxylation: In PPIB-null patient fibroblasts, P986 3-hydroxylation is severely reduced (to ~33% of controls in OI IX, compared to 93–100% in controls). Paradoxically, this is less severe than in OI VII (CRTAP null, ~16%) and OI VIII (P3H1 null, ~22%), suggesting CyPB influences complex function but P3H1 retains partial activity without CyPB (PMID: 19781681). In the Ppib-KO mouse, only 5–11% of α1(I) P986 residues were hydroxylated in osteoblasts and fibroblasts, and 1–2% in tissue (PMID: 24968150).

Collagen folding delay: "Collagen folds more slowly in the absence of CyPB," with 5–8 minute delays in triple helix formation documented in Ppib-KO osteoblasts. This implicates CyPB as the predominant collagen PPIase, though residual CsA-sensitive activity (possibly FKBPs) provides partial redundancy (PMID: 24968150).

Lysyl hydroxylation defects — a distinctive biochemical signature: Beyond the prolyl-3 hydroxylation defect, CyPB deficiency creates tissue-specific dysregulation of helical lysyl hydroxylation and glycosylation by disrupting lysyl hydroxylase (LH) chaperone complexes: - In bone: site-specific underhydroxylation at crosslinking residues α1(I) K87 (57% vs. 98% in wild-type) and α2(I) K87 (45% vs. 77%), leading to an altered collagen crosslink profile - In skin: >80% decrease in total hydroxylysine; positive regulatory LH chaperones (FKBP65/Sc65/P3H3) drop to <11% of wild-type while negative regulator HSP47 increases - "CyPB deficiency profoundly affects Lys post-translational modifications of collagen likely by modulating LH chaperone complexes" (PMID: 30562343)

Crosslink abnormalities: In Ppib-KO bone: - Nearly 3-fold increase in the helical lysine-involved crosslink hydroxylysinonorleucine (HLNL) - Lysylpyridinoline (LP) increased 4–5-fold - HP/LP (hydroxylysylpyridinoline/lysylpyridinoline) ratio decreased 4.25- to 5.6-fold - Deoxy-HHMD and LNL (non-hydroxylysine crosslinks) form exclusively in KO tissue (PMID: 24968150)

These crosslink alterations reduce bone mechanical competence independently of the prolyl-3 hydroxylation defect.

ER trafficking defect: In CyPB-deficient fibroblasts, "a significant amount of collagen remained in the ER" rather than trafficking properly to the Golgi after ascorbic acid stimulation (PMID: 19997487), indicating disrupted intracellular collagen transport.

Reduced collagen deposition: Collagen deposited into insoluble extracellular matrix by Ppib-KO osteoblasts was decreased ~80%, linked to altered fibrillogenesis and abnormal fibril structure (PMID: 24968150).

Collagen Fibril Morphology

Transmission electron microscopy of Ppib-KO mice shows collagen fibrils are abnormally enlarged — on average 1.45 times wider than controls (114.6 ± 22.4 nm vs. 78.6 ± 12.4 nm diameter) (PMID: 19997487), indicating disrupted fibril assembly.

Causal Chain Summary

Biallelic PPIB loss-of-function mutation
    ↓
Absence of cyclophilin B (CyPB) in ER
    ↓
[Branch 1] Reduced P3H1 stability → decreased Pro-986 3-hydroxylation
[Branch 2] Disrupted PPIase activity → delayed collagen triple-helix folding
[Branch 3] Disrupted LH chaperone complexes → abnormal helical lysyl hydroxylation
    ↓
Altered collagen crosslink chemistry (LP↑, HP/LP ratio↓)
Abnormal fibril morphology (enlarged fibrils)
Reduced collagen matrix deposition
    ↓
Defective bone matrix organization and mechanical incompetence
    ↓
Severe osteoporosis, bone fragility, susceptibility to fractures

Cell Types and Biological Processes Involved

Primary cell types: - Osteoblasts (CL:0000062): Primary producers of type I collagen; most severely affected by CyPB deficiency - Chondrocytes (CL:0000138): Type II collagen also lacks Pro3-hydroxylation in KO mice - Fibroblasts (CL:0000057): Show ER retention of collagen and reduced P3H1 levels - Odontoblasts (CL:0000060): Involved in dentinogenesis imperfecta

GO Biological Processes: - Collagen fibril organization (GO:0030199) - Peptidyl-proline modification (GO:0018208) - Post-translational protein modification (GO:0043687) - Collagen biosynthetic process (GO:0032964) - Bone mineralization (GO:0030282) - Protein folding (GO:0006457) - Endoplasmic reticulum to Golgi vesicle-mediated transport (GO:0006888)

GO Cellular Components: - Endoplasmic reticulum lumen (GO:0005788) - Collagen-containing extracellular matrix (GO:0062023) - Extracellular matrix (GO:0031012)


7. Anatomical Structures Affected

Skeletal System (Primary)

  • Long bones (UBERON:0002492): Femur, tibia, humerus, radius, ulna — cortical thinning, bowing, fractures
  • Spine (UBERON:0001617): Platyspondyly, kyphoscoliosis
  • Skull (UBERON:0003129): Decreased calvarial ossification, wormian bones (sutural ossification)
  • Ribs (UBERON:0002228): Fractures, narrow thorax
  • Teeth (UBERON:0007759): Dentinogenesis imperfecta

Secondary Organ Involvement

  • Lung / respiratory system (UBERON:0001004): Restrictive lung disease secondary to narrow chest; recurrent pneumonias in severe cases
  • Ear (UBERON:0001690): Sensorineural hearing loss (cochlea); possibly also conductive component
  • Eye / sclera (UBERON:0001827): Blue sclerae from abnormal scleral collagen
  • Skin (UBERON:0002097): Documented loose/lax skin; abnormal collagen crosslinking

Tissue and Cell Level

  • Bone tissue (UBERON:0002481): Primary affected tissue — osteoporotic cortical and trabecular bone
  • Connective tissue (UBERON:0002384): Broadly affected given ubiquitous type I collagen
  • Cartilage (UBERON:0002418): Type II collagen also affected in KO model

Subcellular Level

  • Endoplasmic reticulum (GO:0005783): Site of CyPB action; collagen retained here in CyPB deficiency
  • Golgi apparatus (GO:0005794): Impaired collagen trafficking
  • Extracellular matrix (GO:0031012): Reduced collagen deposition, abnormal fibril assembly

8. Temporal Development

Onset

  • Perinatal lethal form: Fractures present in utero (detectable by ultrasound at 2nd trimester); bowed long bones at birth; respiratory failure common
  • Severe deforming (non-lethal) form: Fractures at birth or early infancy; wheelchair dependence by age 7 documented (PMID: 19781681)
  • Moderate form: Onset with fractures in early childhood; slower progression

Progression

  • Disease course: Chronic, progressive
  • Fracture accumulation: Multiple fractures through childhood and adolescence, often with minimal trauma
  • Deformity progression: Progressive kyphoscoliosis and long-bone deformity from repeated fracture-healing cycles
  • Lifespan: Variable — perinatal lethality in severe cases; the Ppib-KO mouse has a lifespan of 40–50 weeks with progressive kyphosis (PMID: 19997487)

Critical Periods

  • Prenatal period: Fracture accumulation in utero in severe cases
  • Early childhood: Most critical for fracture management and mobility preservation; "The age at onset of long bone fractures is a critical predictor of future ambulatory ability"
  • Puberty: BMD typically improves relative to childhood during growth but deformity may worsen

9. Inheritance and Population

Epidemiology

  • Overall OI prevalence: ~1 in 15,000–20,000 births across all types
  • OI type IX specifically: Extremely rare; estimated incidence in Chinese population ~1/1,000,000 (PMID: 34659339); worldwide frequency not established due to rarity
  • Fraction of all OI: OI types caused by CRTAP, LEPRE1, and PPIB mutations collectively account for a small minority of OI cases (~5% of total OI); PPIB variants are the least common of the three

Inheritance Pattern

  • Autosomal recessive (AR)
  • Penetrance: Complete — biallelic loss-of-function results in disease
  • Expressivity: Variable (perinatal lethal to moderate)
  • Consanguinity: Multiple reported families involve parental consanguinity, consistent with AR inheritance of rare alleles

Founder Effect

  • East Asian (Chinese) populations have a specific founder variant c.509G>A/p.Gly170Asp with estimated mutation age 65,160 years (~3,258 generations), implying spread from a single common ancestral haplotype. This provides the basis for targeted carrier screening in Chinese populations (PMID: 34659339).

Carrier Frequency

  • Based on gnomAD data for the Chinese founder allele (AF ~0.000924), carrier frequency is approximately 1/540 in East Asian populations for this single variant
  • No reliable carrier frequency data for global PPIB pathogenic variants

Sex Ratio

No sex predilection — autosomal recessive, affects males and females equally.

Geographic Distribution

OI type IX cases have been reported in multiple ethnic and geographic contexts: - North America (consanguineous families; one Native American family) - China/Taiwan (multiple families with founder variant) - Middle Eastern consanguineous families (not specifically OI IX, but recessive OI broadly)


10. Diagnostics

Clinical Criteria

No OI-type-IX-specific diagnostic criteria exist. Diagnosis follows the general OI diagnostic approach combined with molecular confirmation:

  1. Clinical recognition of bone fragility with multiple fractures, ± blue sclerae, ± DI, ± hearing loss
  2. Exclusion of non-accidental injury
  3. Radiographic assessment (wormian bones, osteopenia, long-bone bowing, platyspondyly)
  4. DXA bone mineral density (reduced Z-score for age/height)
  5. Molecular genetic confirmation (PPIB sequencing)

Laboratory Tests

  • Routine labs are typically normal in OI (including calcium, phosphate, alkaline phosphatase); ALP may be mildly elevated
  • Collagen biochemical analysis: Electrophoretic analysis of type I collagen from fibroblast culture can show slightly delayed migration (from altered PTMs); may reveal reduced P3H1 complex function
  • Pro-986 hydroxylation assay: Mass spectrometric analysis can demonstrate reduced Pro-986 3-hydroxylation in collagen from patient fibroblasts (33% vs. controls 93–100%) (PMID: 19781681)

Imaging

  • Radiographs (X-ray): Primary modality — reveals osteopenia, long-bone bowing, fractures, platyspondyly, wormian bones
  • Prenatal ultrasound: Short/bowed long bones in severe cases detectable in 2nd trimester
  • DXA: Quantitative BMD measurement; height-adjusted Z-scores used in children; reveals severely reduced BMD
  • CT: For assessment of scoliosis, basilar invagination

Genetic Testing

  • Preferred approach: Next-generation sequencing (NGS) gene panel for OI-related genes (includes COL1A1, COL1A2, PPIB, CRTAP, LEPRE1/P3H1, and others)
  • Whole exome sequencing (WES): Highly effective; identified novel PPIB variants in multiple families (PMID: 34659339: average WES coverage 242×)
  • Sanger sequencing: Targeted confirmation of variants and parental carrier testing
  • ACMG/AMP classification: All reported PPIB variants are pathogenic or likely pathogenic
  • Carrier testing: Targeted Sanger sequencing of familial variant for parental/sibling testing
  • Prenatal diagnosis: Chorionic villus sampling or amniocentesis with targeted PPIB analysis is feasible once familial variant is known

Available genetic tests: NIH GTR lists 34 clinical tests for OI type IX conditions, including sequence analysis (31 tests), deletion/duplication analysis (18), and targeted variant analysis (7).

Differential Diagnosis

Condition Key Distinguishing Feature
OI Type VII (CRTAP) Rhizomelia present; similar prolyl 3-hydroxylation defect
OI Type VIII (LEPRE1/P3H1) Rhizomelia; white sclerae; P986 hydroxylation more severely reduced
OI Type I-IV (dominant, COL1A1/2) Autosomal dominant; structurally abnormal collagen; different collagen electrophoresis
Child abuse / non-accidental injury Normal genetics; absence of family history
Hypophosphatasia Low ALP; ALPL mutation; responsive to enzyme replacement

11. Outcome / Prognosis

Survival and Mortality

  • Perinatal lethal form (Type II-equivalent): Death in utero or within days of birth from respiratory failure secondary to rib fractures and pulmonary hypoplasia
  • Severe deforming form (Type III-equivalent): Variable survival; one reported patient died at 16 months from pneumonia (PMID: 27625864); survival into adulthood possible with intensive support
  • Life expectancy: Not established for OI IX specifically; severe OI overall has significantly reduced life expectancy, primarily from pulmonary and neurological complications (basilar invagination)

Morbidity

  • Mobility: Progressive loss of ambulatory ability in severe cases; wheelchair dependence may occur by mid-childhood
  • Respiratory: Restrictive lung disease is a major cause of morbidity and death in severe cases
  • Hearing: Early-onset bilateral sensorineural hearing loss documented; requires audiological follow-up
  • Chronic pain: From recurrent fractures and skeletal deformity

Prognostic Factors

  • Severity of skeletal phenotype at birth — most important prognostic indicator
  • Achievement of motor milestones — children achieving independent sitting/standing by age 12 have better ambulatory prognosis
  • Spinal deformity — severe kyphoscoliosis worsens pulmonary and cardiovascular prognosis
  • Response to bisphosphonate treatment — improves BMD and may reduce fracture rate

12. Treatment

Bisphosphonate Therapy (Standard of Care)

Bisphosphonates are the most established pharmacological treatment across all OI types, including recessive forms:

  • Intravenous pamidronate: Most widely used in children; typical regimen 1–3 mg/kg every 3–4 months; reduces fracture rate and improves lumbar spine BMD (~25% annual increase in young children); PMID: 25054949
  • Intravenous zoledronic acid: 0.05 mg/kg/dose; comparable efficacy to pamidronate with fewer infusions; both increase lumbar spine BMD (51.8% vs. 67.6% respectively)
  • Oral alendronate: Alternative for milder cases
  • Duration: Typically continued through childhood growth; drug holiday considered after reaching final height

No PPIB-specific pharmacological trials exist; bisphosphonate data for OI IX is extrapolated from broader OI studies.

MAXO term: MAXO:0000647 (chemotherapy) — not applicable; pharmacotherapy with bisphosphonates: NCIT:C15986 (Pharmacotherapy); specific agents: CHEBI:60753 (pamidronate), CHEBI:74699 (zoledronic acid)

Emerging Pharmacological Treatments

  • Setrusumab (UX143): Anti-sclerostin monoclonal antibody promoting bone formation; Phase 2b ASTEROID trial showed BMD improvement in adult OI; Phase 3 ORBIT and COSMIC trials missed primary endpoint (fracture rate reduction) but achieved secondary endpoints (BMD increase); FDA Breakthrough Therapy designation granted. No specific data for OI IX.
  • Anti-TGF-β antibodies (fresolimumab): Preclinical studies showing promise in OI mouse models
  • 4-Phenylbutyrate (4-PBA): Chemical chaperone shown to rescue ER stress in recessive OI zebrafish models; targets the cellular stress from impaired prolyl hydroxylation complex
  • Denosumab: Anti-RANKL antibody; small studies in severe pediatric OI; not standard

MAXO term: MAXO:0000950 (supportive care) for symptom management

Surgical Management

  • Intramedullary rodding (telescoping rods — Fassier-Duval, Bailey-Dubow): Prophylactic stabilization of femora/tibiae prone to bowing and fracture; telescoping rods accommodate growth; telescopic nailing significantly reduces fracture rates (33.3% vs. 75%) and deformity rates (23.3% vs. 50%) vs. traditional nails
  • Osteotomy with internal fixation: For correction of severe long-bone deformity
  • Spinal surgery: For severe progressive scoliosis (>40–50°); high complication risk given osteoporotic bone

MAXO term: MAXO:0000004 (surgical procedure)

Supportive Care

  • Physiotherapy: Aquatic therapy, low-impact exercise; improves muscle strength and mobility; MAXO:0000011 (physical therapy)
  • Occupational therapy: Adaptive equipment, fall prevention
  • Calcium and Vitamin D supplementation: Standard nutritional support
  • Hearing aids / audiological management: For sensorineural hearing loss; recommended for all PPIB-OI patients (PMID: 27625864)
  • Respiratory support: Supplemental oxygen, ventilatory assistance in severe cases

Gene Therapy (Preclinical)

  • AAV-based gene editing for collagen mutations is in preclinical development; no specific PPIB-targeted gene therapy trials
  • CRISPR/Cas9 and gene addition approaches are in animal model testing
  • Stem cell therapy (mesenchymal stem cell transplantation — BOOSTB4 trial) is under investigation for severe OI, potentially applicable to recessive forms

13. Prevention

Primary Prevention

  • Genetic counseling for families with a known PPIB mutation — essential before further pregnancies (MAXO:0000079 genetic counseling)
  • Cascade screening of siblings and relatives of affected individuals and known carriers
  • Preimplantation genetic diagnosis (PGD): Available for couples where both are identified carriers

Secondary Prevention (Early Detection)

  • Prenatal diagnosis: Molecular analysis of CVS or amniocentesis for known familial PPIB variants; prenatal ultrasound for skeletal dysplasia signs in at-risk pregnancies
  • Newborn screening: Not currently part of national newborn screening programs; no metabolite-based test exists; diagnosis requires clinical suspicion + genetic testing
  • Founder variant carrier screening: In East Asian (Chinese) populations, screening for the c.509G>A/p.Gly170Asp founder allele may be considered in preconception or prenatal settings given carrier frequency ~1/540

Tertiary Prevention (Preventing Complications)

  • Fracture prevention: Bisphosphonate therapy, intramedullary rodding, avoidance of contact sports
  • Hearing loss monitoring: Audiological testing at diagnosis and regular follow-up
  • Respiratory monitoring: Pulmonary function tests; prompt treatment of respiratory infections
  • Scoliosis surveillance: Regular spinal imaging; early intervention when curvature progresses
  • Nutritional optimization: Calcium, Vitamin D, protein intake

14. Other Species / Natural Disease

Animal Models

OI type IX is not documented as a naturally occurring disease in veterinary species. The PPIB orthologue is highly conserved across mammals.

NCBI Taxon: Mus musculus (10090) — primary model


15. Model Organisms

Ppib Knockout Mouse Model

The Ppib-null (cyclophilin B-deficient) mouse is the principal model organism for OI type IX and was characterized by Choi et al. (PMID: 19997487):

Phenotype: - Severe osteopenia with dramatically reduced trabecular bone volume - Increased trabecular separation, reduced trabecular number - Progressive kyphosis, evident by 8 weeks, progressively worsening - Reduced body size and weight - Lifespan 40–50 weeks - Loose, lax skin (Ehlers-Danlos-like properties) - Normal femur-to-tibia ratios (no rhizomelia) - Normal fertility and birth appearance

Collagen findings: - Abnormally enlarged collagen fibrils (114.6 ± 22.4 nm vs. 78.6 ± 12.4 nm in controls) — "on average 1.45 times wider than similar samples from littermate control mice" (PMID: 19997487) - Near-total loss of Pro-986 3-hydroxylation (1–5% vs. near-100% in controls) - Severely disrupted helical lysyl hydroxylation and crosslink pattern (PMID: 24968150) - 80% reduction in collagen matrix deposition by osteoblasts - Reduced total skin collagen content; reduced skin tensile strength

Molecular findings: - P3H1 levels substantially reduced; CRTAP levels unaffected — demonstrating CyPB-dependent P3H1 stabilization - Collagen retained in ER rather than trafficking to Golgi - Residual collagen PPIase activity attributable to cyclosporine A-sensitive enzymes (suggesting FKBP redundancy)

Model limitations (Human-Model Mismatch considerations): - Mice do not show rhizomelia observed in some human cases - Mouse lifespan (40–50 weeks) and the degree of phenotypic severity may not fully recapitulate the human perinatal lethal form - Mice show pronounced skin laxity; this is less well-documented in human patients - Mouse bone biology differs from human (faster remodeling, different cortical organization)

Genetic model type: Constitutive knockout (whole-body Ppib deletion)

Available resources: - MGI: Available through IMPC and KOMP2 programs - JAX: Ppib-null alleles available for research


Summary of Key Evidence Citations

PMID Description
19781681 Van Dijk et al. — First description of PPIB mutations causing OI (2 families; molecular basis established)
19997487 Choi et al. — Severe OI in Ppib-KO mice; phenotypic and molecular characterization
20089953 Barnes et al. (NEJM) — Lack of cyclophilin B in OI with normal collagen folding (homozygous start-codon mutation; moderate OI, no rhizomelia)
21282188 Van Dijk et al. — PPIB mutations delay procollagen chain association; perinatal lethal to moderate phenotype spectrum
24968150 Pokidysheva et al. — Abnormal type I collagen PTM and crosslinking in Ppib-KO mouse; lysyl hydroxylation and crosslink chemistry
27625864 Balasubramanian et al. — PPIB mutation with severe phenotype and congenital hearing loss (Native American case)
34659339 Zhu et al. — Founder PPIB variant p.Gly170Asp in Chinese population; prevalence estimate 1/1,000,000
30562343 Ishikawa et al. — Cyclophilin B control of skin type I collagen lysine PTMs via LH chaperone complexes

Suggested MONDO ID: MONDO:0012978 (Osteogenesis imperfecta type IX)

Key HPO terms: - HP:0002757 (Recurrent fractures) - HP:0000939 (Osteoporosis) - HP:0002645 (Wormian bones) - HP:0002808 (Kyphosis) - HP:0002650 (Scoliosis) - HP:0000592 (Blue sclerae) - HP:0000703 (Dentinogenesis imperfecta) - HP:0000407 (Sensorineural hearing impairment) - HP:0004322 (Short stature) - HP:0001382 (Joint hypermobility) - HP:0000926 (Platyspondyly)

Key GO terms (Biological Process): - GO:0030199 (Collagen fibril organization) - GO:0018208 (Peptidyl-proline modification) - GO:0032964 (Collagen biosynthetic process) - GO:0006457 (Protein folding)

Key CL terms: - CL:0000062 (Osteoblast) - CL:0000057 (Fibroblast) - CL:0000138 (Chondrocyte)


Sources: - PPIB Mutations Cause Severe Osteogenesis Imperfecta (PMC2756556) - Severe Osteogenesis Imperfecta in Cyclophilin B–Deficient Mice (PMC2777385) - Abnormal Type I Collagen PTM and Crosslinking in Cyclophilin B KO Mouse (PMC4072593) - Osteogenesis imperfecta caused by PPIB mutation with congenital hearing loss (PMC5020983) - A Founder Pathogenic Variant of PPIB Unique to Chinese Population (PMC8511635) - Cyclophilin B control of lysine PTMs of skin type I collagen (PMC6602281) - Osteogenesis Imperfecta - StatPearls (NBK536957) - OMIM #259440 — Osteogenesis Imperfecta, Type IX - NIH GTR — Osteogenesis imperfecta type 9 - Setrusumab for OI — Phase 2b ASTEROID Study (PMC11371902) - Mutations in PPIB delay procollagen chain association (HMG, PMID:21282188) - Bisphosphonate therapy for osteogenesis imperfecta (PMC6611487)

Falcon
1. Disease Information
Edison Scientific Literature 42 citations 2026-06-30T07:02:06.465243

1. Disease Information

Overview

Osteogenesis Imperfecta Type IX (OI type IX) is an autosomal recessive form of osteogenesis imperfecta, a heritable skeletal dysplasia characterized by bone fragility, skeletal deformity, and growth deficiency (jovanovic2024updateonthe pages 8-9). OI type IX is caused by biallelic mutations in the PPIB gene (MIM 123841), which encodes cyclophilin B (CyPB), a 21-kDa endoplasmic reticulum (ER)-resident peptidyl-prolyl cis-trans isomerase (PPIase) (dijk2009ppibmutationscause pages 1-2). The disease was first described in 2009 when van Dijk et al. reported the initial two families with PPIB mutations causing severe OI (dijk2009ppibmutationscause pages 1-2).

The following table summarizes the key disease characteristics:

Characteristic Summary
Disease Name Osteogenesis Imperfecta Type IX (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, jovanovic2024updateonthe pages 8-9)
OMIM ID 259440 (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 1-2)
Gene PPIB (peptidyl-prolyl cis-trans isomerase B) (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 2-3)
Protein Cyclophilin B (CyPB), an ER-resident peptidyl-prolyl cis-trans isomerase and collagen chaperone (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, jovanovic2024updateonthe pages 8-9)
Chromosome 15q22.31 (reported genomic locus for PPIB; chromosome location not explicitly stated in retrieved context) (pyott2011mutationsinppib pages 2-3)
Inheritance Autosomal recessive (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 3-4)
Severity Range Moderate to perinatal lethal; reported phenotypes span moderate OI to severe/perinatal lethal disease (jovanovic2024updateonthe pages 8-9, pyott2011mutationsinppib pages 1-2)
Key Clinical Features Bone fragility, multiple fractures, short stature/growth deficiency, bowed long bones, scoliosis/kyphosis, gray sclerae, joint hypermobility, absence of rhizomelia, and no dentinogenesis imperfecta reported in at least one patient (dijk2009ppibmutationscause pages 2-3, pyott2011mutationsinppib pages 3-4, cotti2025moleculardriversof pages 9-10)
Molecular Mechanism Impaired procollagen prolyl 3-hydroxylation, delayed collagen folding/chain association, abnormal post-translational modification and cross-linking, intracellular retention of overmodified collagen with ER stress/cellular stress (cabral2014abnormaltypei pages 1-2, etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 1-2)
Prevalence Ultra-rare; literature in retrieved context includes the first 2 families (2009) and 3 additional families (2011), consistent with <10 families reported in early literature (dijk2009ppibmutationscause pages 1-2, pyott2011mutationsinppib pages 3-4)
Animal Models Ppib−/− mice recapitulate OI with kyphosis, osteoporosis, reduced BMD/BV/TV, abnormal collagen fibrils, increased brittleness, and reduced bone strength (cabral2014abnormaltypei pages 2-3, choi2009severeosteogenesisimperfecta pages 1-2, cabral2014abnormaltypei pages 1-2)
Treatment Supportive multidisciplinary care; bisphosphonates are standard for moderate/severe OI, and intravenous pamidronate was used in reported PPIB-mutant patients; orthopedic surgery, physiotherapy, and rehabilitation are important adjuncts (dijk2009ppibmutationscause pages 2-3, etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8, kresnadi2024theroleof pages 5-7)

Table: This table summarizes the core disease characteristics of Osteogenesis Imperfecta Type IX, including genetics, clinical presentation, mechanism, rarity, model systems, and current management. It is useful as a compact knowledge-base style overview anchored to cited evidence from the retrieved literature.

Key Identifiers

  • OMIM Phenotype: 259440 (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 1-2)
  • OMIM Gene: PPIB, 123841
  • ICD-10: Q78.0 (Osteogenesis imperfecta, general)
  • MONDO: MONDO:0013329 (osteogenesis imperfecta type 9)
  • Orphanet: ORPHA:2769 (classified under rare OI forms)

Synonyms

  • Osteogenesis Imperfecta Type 9
  • OI Type IX
  • PPIB-related Osteogenesis Imperfecta
  • Cyclophilin B-deficient OI

Information Source

The information is derived from aggregated disease-level resources including landmark genetic studies, reviews, and animal model characterization, rather than individual patient electronic health records.


2. Etiology

Disease Causal Factors

OI type IX is a monogenic disorder caused exclusively by homozygous or compound heterozygous loss-of-function mutations in the PPIB gene (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 2-3). There are no known environmental or infectious etiological components. The disease is purely genetic in origin, arising from defects in the collagen biosynthetic machinery (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4).

Genetic Risk Factors

  • Causal gene: PPIB (peptidyl-prolyl cis-trans isomerase B), located on chromosome 15q22.31 (pyott2011mutationsinppib pages 2-3)
  • Causal variants: Frameshift deletions, nonsense mutations, splice-site mutations, and start-codon substitutions in PPIB (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 3-4, cotti2025moleculardriversof pages 9-10)
  • Inheritance: Autosomal recessive; both parents must be heterozygous carriers (pyott2011mutationsinppib pages 3-4)
  • Consanguinity role: At least one of the originally reported families (van Dijk family 2) involved consanguineous Pakistani parents (first cousins), consistent with the autosomal recessive inheritance pattern (dijk2009ppibmutationscause pages 2-3)

Environmental Risk Factors

No specific environmental risk factors have been identified for OI type IX. As a congenital genetic disorder, the disease manifests independently of environmental exposures. However, environmental factors such as trauma, inadequate nutrition (particularly calcium and vitamin D deficiency), and immobilization may exacerbate fracture risk in affected individuals.

Protective Factors

No genetic or environmental protective factors specific to OI type IX have been identified. General bone health measures (adequate nutrition, weight-bearing activity when possible) may offer modest benefit as in all forms of OI.

Gene-Environment Interactions

No specific gene-environment interactions have been described for OI type IX.


3. Phenotypes

Clinical Features

OI type IX presents with a phenotypic spectrum ranging from moderate to perinatal lethal disease, clinically compatible with Sillence type II-B/III OI (dijk2009ppibmutationscause pages 1-2). The condition is generally described as less severe than OI types VII (CRTAP) and VIII (P3H1), and notably occurs without rhizomelia (cotti2025moleculardriversof pages 9-10).

Skeletal phenotype (HP:0000924 – Abnormality of the skeletal system): - Bone fragility / recurrent fractures (HP:0002757): Multiple long-bone fractures, often with prenatal or neonatal onset. Fractures of humeri, radii, ulna, femora, tibiae, and fibula with callus formation have been reported (dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 1-2). Frequency: virtually 100% of affected individuals. - Bowed long bones (HP:0002982): Bowing of femora, tibiae, ulnae, and anterior bowing of tibiae are consistent findings (dijk2009ppibmutationscause pages 2-3, cotti2025moleculardriversof pages 9-10). Frequency: high, >90%. - Short stature (HP:0004322): Severe growth deficiency. One patient at age 8 years had a height of 79.9 cm (SDS −8.4), corresponding to the 50th percentile for a 17-month-old child. Another patient at 6 months measured 47.4 cm (SDS −8.8) (dijk2009ppibmutationscause pages 2-3). - Scoliosis / Kyphoscoliosis (HP:0002650, HP:0002751): Kyphoscoliosis of thoracic and lumbar spine was evident in reported patients (dijk2009ppibmutationscause pages 2-3, cotti2025moleculardriversof pages 9-10). - Abnormal rib morphology (HP:0000772): Discontinuously beaded ribs, slender ribs, and small bell-shaped thorax have been described (dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 1-2). - Platyspondyly (HP:0000926): Described in some patients (pyott2011mutationsinppib pages 3-4). - Decreased calvarial mineralization (HP:0100252): Near-absence of calvarial mineralization described in severe cases (pyott2011mutationsinppib pages 3-4). - Large anterior fontanelle (HP:0000260): Noted in affected neonates (dijk2009ppibmutationscause pages 2-3).

Non-skeletal features: - Gray sclerae (HP:0000592): Gray-colored sclerae typical of severe OI were noted in at least one patient, not the distinctly blue sclerae of OI type I (dijk2009ppibmutationscause pages 2-3). - No dentinogenesis imperfecta: Absence of dentinogenesis imperfecta was specifically noted in at least one patient (dijk2009ppibmutationscause pages 2-3). - Joint hypermobility (HP:0001382): Hypermobility of joints, especially hip and finger joints, was observed (dijk2009ppibmutationscause pages 2-3, cotti2025moleculardriversof pages 9-10). - Motor developmental delay (HP:0001270): Gross motor development was delayed; one patient achieved unsupported sitting at age 2.5 years and standing with support at age 4.5 years, and never walked independently (dijk2009ppibmutationscause pages 2-3). - Skin laxity: Loose, thin skin similar to OI patients has been observed in animal models (choi2009severeosteogenesisimperfecta pages 2-3, choi2009severeosteogenesisimperfecta pages 3-5).

HPO Terms

  • HP:0002757 – Recurrent fractures
  • HP:0002982 – Bowed long bones
  • HP:0004322 – Short stature
  • HP:0002650 – Scoliosis
  • HP:0002751 – Kyphosis
  • HP:0000772 – Abnormal rib morphology
  • HP:0001382 – Joint hypermobility
  • HP:0000592 – Blue/gray sclerae
  • HP:0001270 – Motor delay
  • HP:0000926 – Platyspondyly
  • HP:0100252 – Decreased calvarial mineralization
  • HP:0000260 – Wide anterior fontanelle

Quality of Life Impact

Patients with OI type IX experience severe impairment in mobility and activities of daily living. The most severely affected children are wheelchair-dependent and unable to ambulate independently (dijk2009ppibmutationscause pages 2-3). Chronic fractures, skeletal deformity, and short stature profoundly affect quality of life. Perinatal lethal forms preclude survival.


4. Genetic/Molecular Information

Causal Gene

PPIB (Peptidyl-Prolyl Isomerase B; HGNC:9255; OMIM 123841), located on chromosome 15q22.31, comprises 5 exons and encodes a 216-amino acid protein (pyott2011mutationsinppib pages 2-3, pyott2011mutationsinppib pages 3-4). The gene product, cyclophilin B (CyPB), is an ER-resident PPIase belonging to the cyclophilin family, with roles in collagen folding, prolyl 3-hydroxylation, inflammation, viral infection, and cancer (dijk2009ppibmutationscause pages 1-2, jovanovic2024updateonthe pages 8-9).

Pathogenic Variants

The following table details the specific PPIB mutations reported in OI type IX patients:

Family / report Mutation (DNA level) Mutation (protein level) Mutation type Exon / intron location Effect on CyPB protein Clinical severity Reference / year
van Dijk family 1 c.556_559delAAGA p.Lys186Glnfs*8 Homozygous frameshift deletion Exon 5 Replaces the last 31 highly conserved C-terminal amino acids; mutant mRNA present, but intracellular CyPB was undetectable in proband fibroblasts, consistent with absent or unstable truncated protein (dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 3-6) Perinatal lethal / severe, compatible with Sillence type II-B; prenatal fractures, bowed/fractured long bones without rhizomelia (dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 1-2) van Dijk et al., 2009 (dijk2009ppibmutationscause pages 1-2, dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 3-6)
van Dijk family 2 c.451C>T p.Gln151* Homozygous nonsense Exon 4 Premature truncation removing the last 65 amino acids at the C-terminus; predicted to impair function or trigger nonsense-mediated decay (dijk2009ppibmutationscause pages 3-6) Severe deforming to moderately severe OI; one child survived with OI type III, marked short stature, kyphoscoliosis, wheelchair dependence; affected sib diagnosed prenatally/neonatally (dijk2009ppibmutationscause pages 2-3) van Dijk et al., 2009 (dijk2009ppibmutationscause pages 1-2, dijk2009ppibmutationscause pages 2-3, dijk2009ppibmutationscause pages 3-6)
Pyott family 1 (P1) c.414_423del p.Ser139Thrfs*21 Homozygous frameshift deletion Exon 4 Creates a premature termination codon 61 nt downstream; marked nonsense-mediated mRNA decay; predicted shortened 158-aa protein not detected on western blot (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 3-4) Perinatal lethal to very severe OI phenotype (study cohort range stated as perinatal lethal to moderate) (pyott2011mutationsinppib pages 2-3, pyott2011mutationsinppib pages 1-2) Pyott et al., 2011 (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 3-4, pyott2011mutationsinppib pages 1-2)
Pyott family 2 (P2) c.120delC + c.313G>A frameshift allele truncating downstream of c.120delC; p.Gly105Arg on second allele Compound heterozygous: frameshift + missense Exon 2 + exon 2 c.120delC allele undergoes rapid mRNA degradation; only the c.313A transcript is readily detected in cDNA; western blot showed only a very small amount of CYPB protein, indicating marked reduction of residual protein (pyott2011mutationsinppib pages 5-6) Moderate OI within reported spectrum; study title and text state phenotypes ranged from perinatal lethal to moderate (pyott2011mutationsinppib pages 2-3, pyott2011mutationsinppib pages 1-2) Pyott et al., 2011 (pyott2011mutationsinppib pages 5-6, pyott2011mutationsinppib pages 1-2)
Pyott family 3 (P3) c.343+1G>A Splice defect causing p.Gly115 deletion plus 10-aa insertion in one transcript; exon 3 skipping in alternate transcript Homozygous splice-donor mutation Intron 3 donor site Produced two abnormal transcripts: one with retention of 27 bp of intron 3 yielding an in-frame altered protein, and one with exon 3 skipping causing frameshift/PTC and NMD; no CYPB detected on western blot (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 5-6) Moderate OI within reported spectrum; radiographs at 9–16 years showed broad poorly modeled femora, cortical thinning, and stable scoliosis (pyott2011mutationsinppib pages 3-4, pyott2011mutationsinppib pages 1-2) Pyott et al., 2011 (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 5-6, pyott2011mutationsinppib pages 3-4, pyott2011mutationsinppib pages 1-2)
Additional patients noted in later review Start-codon Arg-to-Met substitution (exact cDNA not provided in available context) Arg-to-Met substitution affecting translation initiation / start codon Start-codon missense / initiation codon defect Start codon Reported in other OI type IX patients; notable because it was described as not delaying collagen folding or altering proline 3-hydroxylation levels in the cited review summary, suggesting residual or atypical function (cotti2025moleculardriversof pages 9-10) OI type IX with severe bone deformities in broader phenotype spectrum; exact family-level severity not detailed in available context (cotti2025moleculardriversof pages 9-10) Cotti et al., 2025 review summary (cotti2025moleculardriversof pages 9-10)

Table: This table summarizes the reported PPIB variants associated with osteogenesis imperfecta type IX, including their molecular class, predicted effect on cyclophilin B, and associated clinical severity. It is useful for linking genotype to mechanism and phenotype across the key early case series and later review evidence.

Key variant types include: - Frameshift deletions: c.556_559delAAGA (p.Lys186GlnfsX8), c.414_423del (p.Ser139ThrfsX21), c.120delC (dijk2009ppibmutationscause pages 2-3, pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 3-4) - Nonsense: c.451C>T (p.Gln151X) (dijk2009ppibmutationscause pages 3-6) - Splice-site: c.343+1G>A (IVS3+1G>A) (pyott2011mutationsinppib pages 4-5) - Missense (compound heterozygous): c.313G>A (p.Gly105Arg) (pyott2011mutationsinppib pages 5-6) - Start codon substitution: Arg-to-Met substitution affecting translation initiation (cotti2025moleculardriversof pages 9-10)

All reported variants are classified as pathogenic and result in absent or severely reduced CyPB protein levels (dijk2009ppibmutationscause pages 3-6, pyott2011mutationsinppib pages 5-6). The variants are germline in origin. Population allele frequencies in gnomAD are expected to be extremely low or absent, consistent with ultra-rare recessive disease.

Functional Consequences

PPIB mutations predominantly cause loss of function through: 1. Nonsense-mediated mRNA decay (NMD) leading to absent protein (pyott2011mutationsinppib pages 4-5, pyott2011mutationsinppib pages 3-4) 2. Protein truncation/instability with undetectable CyPB on western blot (dijk2009ppibmutationscause pages 3-6, pyott2011mutationsinppib pages 4-5) 3. Marked reduction of CyPB protein with residual partial function in compound heterozygotes (pyott2011mutationsinppib pages 5-6)

Notably, PPIB mutations do not destabilize the other complex members CRTAP and P3H1; immunohistochemistry of bone tissue from PPIB-mutant patients showed positive staining for both CRTAP and P3H1, despite absent CyPB signal (dijk2009ppibmutationscause pages 3-6). This contrasts with CRTAP or LEPRE1 (P3H1) mutations, where the partner proteins are also destabilized.

Modifier Genes

No specific modifier genes have been identified for OI type IX.

Epigenetic Information

No disease-specific epigenetic modifications have been described for OI type IX.


5. Environmental Information

OI type IX is a purely genetic disorder with no identified environmental causal factors, lifestyle contributors, or infectious agents. General bone health optimization (nutrition, vitamin D, calcium, and avoidance of high-impact trauma) is recommended as supportive management.


6. Mechanism / Pathophysiology

Molecular Pathways

CyPB participates in multiple interconnected pathways relevant to collagen biosynthesis:

1. Prolyl 3-Hydroxylation Complex (GO:0030867 – rough endoplasmic reticulum membrane): CyPB forms a 1:1:1 complex with P3H1 (encoded by LEPRE1) and CRTAP in the ER, responsible for 3-hydroxylation of proline at position 986 (Pro986) in the α1 chains of type I collagen (dijk2009ppibmutationscause pages 1-2, cabral2014abnormaltypei pages 1-2). In PPIB-deficient patients, Pro986 3-hydroxylation is reduced to approximately 30% of control levels (compared to 16% in CRTAP-deficient and 22% in P3H1-deficient patients) (dijk2009ppibmutationscause pages 3-6). In Ppib knockout mice, 3-hydroxylation is essentially absent (2–11% residual activity) (cabral2014abnormaltypei pages 1-2).

2. Peptidyl-Prolyl Cis-Trans Isomerization (GO:0003755): CyPB catalyzes the cis-trans isomerization of prolyl-peptide bonds, which is the rate-limiting step in collagen triple helix folding (cabral2014abnormaltypei pages 1-2). Loss of CyPB delays collagen folding, leading to extended exposure of unfolded procollagen chains to modifying enzymes (hydroxylases and glycosyltransferases), resulting in overmodification of the collagen triple helix (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, cotti2025moleculardriversof pages 7-9).

3. Procollagen Chain Association and C-Propeptide Folding: CyPB facilitates folding of the proline-rich C-terminal propeptide regions required for procollagen chain association. Loss of CyPB causes slow incorporation of proα1(I) chains into trimers (pyott2011mutationsinppib pages 1-2).

4. Lysyl Hydroxylation and Collagen Crosslinking: CyPB indirectly regulates lysyl hydroxylase 1 (LH1/PLOD1) activity. In CyPB-deficient mice and cells, site-specific helical lysine hydroxylation is altered, particularly at the critical crosslinking residue K87, which shows significantly reduced hydroxylation (~20% unhydroxylated vs. <1% in wild-type) (cabral2014abnormaltypei pages 12-13, cabral2014abnormaltypei pages 6-8). This leads to increased underhydroxylated crosslinks, altered HP/LP (hydroxylysyl pyridinoline/lysyl pyridinoline) crosslink ratios, and ultimately compromised collagen fiber integrity and bone strength (cabral2014abnormaltypei pages 12-13, cabral2014abnormaltypei pages 1-2).

Cellular Processes

ER Stress and Unfolded Protein Response (UPR): Overmodified procollagen accumulates in the ER, where it binds to protein disulfide isomerase (PDI) and prolyl 4-hydroxylase 1 (P4H1), triggering ER stress and UPR activation (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, jovanovic2024updateonthe pages 15-16). Application of the chaperone 4-phenylbutyrate (4-PBA) has been shown to decrease UPR and ameliorate cellular homeostasis in OI patient fibroblasts with prolyl 3-hydroxylation complex defects (jovanovic2024updateonthe pages 15-16).

Impaired Procollagen Trafficking: In CyPB-deficient cells, procollagen fails to properly localize to the Golgi apparatus and instead accumulates in the ER (choi2009severeosteogenesisimperfecta pages 1-2, choi2009severeosteogenesisimperfecta pages 2-3). CyPB normally traverses the ER with procollagen into pre-Golgi intermediate vesicles, facilitating procollagen export (jovanovic2024updateonthe pages 19-20).

Abnormal Collagen Fibrillogenesis: Collagen fibrils in CyPB-deficient tissues exhibit abnormal morphology, with fibrils approximately 1.45 times wider than normal (114.6 nm vs. 78.6 nm diameter) (choi2009severeosteogenesisimperfecta pages 2-3). Collagen deposition into the extracellular matrix is decreased in CyPB-deficient cells (cabral2014abnormaltypei pages 1-2).

GO Terms for Biological Processes

  • GO:0032502 – developmental process
  • GO:0001503 – ossification
  • GO:0006457 – protein folding
  • GO:0003755 – peptidyl-prolyl cis-trans isomerase activity
  • GO:0030867 – rough endoplasmic reticulum membrane
  • GO:0030199 – collagen fibril organization
  • GO:0018401 – peptidyl-proline hydroxylation to 4-hydroxy-L-proline

CL Terms for Cell Types

  • CL:0000062 – osteoblast
  • CL:0000138 – fibroblast
  • CL:0000092 – osteocyte
  • CL:0000137 – osteoclast (involved in bone remodeling response)

7. Anatomical Structures Affected

Organ Level

  • Primary organs: Skeletal system (bones), including long bones, vertebrae, ribs, skull (UBERON:0001474 – bone element)
  • Secondary involvement: Connective tissues broadly, including skin (loose/thin skin observed) (choi2009severeosteogenesisimperfecta pages 2-3, choi2009severeosteogenesisimperfecta pages 3-5); potential respiratory compromise due to thoracic deformity
  • Body systems: Musculoskeletal system primarily; potential cardiovascular and respiratory involvement as secondary complications in severe OI generally (jovanovic2024updateonthe pages 16-17)

Tissue and Cell Level

  • Tissue types: Bone (UBERON:0002481), cartilage, connective tissue (dermis)
  • Cell populations: Osteoblasts (CL:0000062 – primary bone-forming cells affected), fibroblasts (CL:0000138), chondrocytes

Subcellular Level

  • Endoplasmic reticulum (GO:0005783): Primary site of CyPB function; procollagen accumulation and ER stress occur here (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, choi2009severeosteogenesisimperfecta pages 1-2)
  • Golgi apparatus (GO:0005794): Impaired procollagen trafficking to Golgi (choi2009severeosteogenesisimperfecta pages 1-2)
  • Extracellular matrix (GO:0031012): Abnormal collagen deposition, fibril formation, and crosslinking (cabral2014abnormaltypei pages 1-2)

UBERON Terms

  • UBERON:0002481 – bone tissue
  • UBERON:0001474 – bone element
  • UBERON:0000004 – nose (craniofacial)
  • UBERON:0001137 – dorsum (spine/kyphosis)
  • UBERON:0002229 – femur
  • UBERON:0004247 – rib

8. Temporal Development

Onset

  • Age of onset: Congenital; fractures are typically detected prenatally (by 20 weeks gestation on ultrasound) or at birth (dijk2009ppibmutationscause pages 2-3). In the most severe cases, pregnancy termination occurred at 16–22 weeks after prenatal diagnosis (dijk2009ppibmutationscause pages 2-3).
  • Onset pattern: Congenital with chronic progressive course

Progression

  • Disease course: Chronic, lifelong, progressive skeletal deformity with ongoing fracture risk (cotti2025moleculardriversof pages 9-10)
  • Progression rate: Variable; some patients survive infancy and childhood with progressive deformity (scoliosis, bowing), while others die perinatally (dijk2009ppibmutationscause pages 2-3, pyott2011mutationsinppib pages 1-2)
  • Milestones in reported patients: One patient (P2-1, van Dijk family 2) had no new fractures between birth and age 3 years while on pamidronate therapy, achieved unsupported sitting at age 2.5 years, standing with support at 4.5 years, and remained wheelchair-dependent at age 7 years (dijk2009ppibmutationscause pages 2-3)

Critical Periods

  • Prenatal period is critical for diagnosis (ultrasound detection of fractures/bowing)
  • Growth periods in childhood represent windows for maximal bisphosphonate benefit (etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8)

9. Inheritance and Population

Epidemiology

  • Overall OI prevalence: Approximately 1 in 15,000–20,000 births worldwide (chetty2021theevolutionof pages 5-6)
  • OI type IX prevalence: Ultra-rare; only a handful of families have been reported since the initial description in 2009. The initial reports included 2 families (4 affected individuals) by van Dijk et al. (2009) and 3 additional families by Pyott et al. (2011) (dijk2009ppibmutationscause pages 1-2, pyott2011mutationsinppib pages 3-4). Additional cases have been reported subsequently, including a Chinese pedigree (Jiang et al. 2017, not fully available in current search).
  • Proportion of OI: Recessive forms collectively account for approximately 10% of all OI cases, with PPIB mutations representing an extremely small fraction of these (chetty2021theevolutionof pages 5-6)

Inheritance Pattern

  • Autosomal recessive (AR) (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4, pyott2011mutationsinppib pages 3-4)
  • Penetrance: Complete in homozygotes/compound heterozygotes for pathogenic variants
  • Expressivity: Variable; phenotype ranges from moderate OI to perinatal lethal (jovanovic2024updateonthe pages 8-9, pyott2011mutationsinppib pages 1-2)
  • Carrier frequency: Unknown but expected to be extremely low
  • Consanguinity: Consanguinity has been documented in at least one family (first-cousin Pakistani parents) (dijk2009ppibmutationscause pages 2-3)
  • Geographic distribution: Cases reported from diverse ethnic backgrounds including North European and Pakistani families (dijk2009ppibmutationscause pages 2-3), and Chinese families
  • Sex ratio: No sex predilection; males and females equally affected (autosomal inheritance)

10. Diagnostics

Clinical Tests

  • Radiographic findings (imaging): Skeletal surveys reveal shortened/bowed long bones, fractures with callus formation, discontinuously beaded ribs, bell-shaped thorax, platyspondyly, irregular metaphyses, decreased calvarial mineralization, and osteopenia (dijk2009ppibmutationscause pages 2-3, pyott2011mutationsinppib pages 3-4, dijk2009ppibmutationscause pages 1-2)
  • Bone densitometry (DXA): Decreased bone mineral density (BMD) Z-scores (dijk2014osteogenesisimperfectaclinical pages 5-7)
  • Collagen electrophoresis: Overmodification of type I collagen (slower electrophoretic migration) on SDS-PAGE analysis of fibroblast-produced collagen, with normal thermal stability—distinguishing it from dominant collagen mutations (pyott2011mutationsinppib pages 2-3, pyott2011mutationsinppib pages 1-2)
  • Prenatal ultrasound: Advanced ultrasound at 20 weeks gestation can detect long-bone fractures and bowing (dijk2009ppibmutationscause pages 2-3)

Genetic Testing

  • Recommended approach: Next-generation sequencing (NGS) gene panels for OI-related genes including COL1A1, COL1A2, CRTAP, LEPRE1, PPIB, SERPINH1, FKBP10, SERPINF1, IFITM5, and other known OI genes (dinulescu2024newperspectivesof pages 2-4)
  • Whole exome sequencing (WES): Useful for identifying PPIB mutations, particularly in cases where standard collagen gene testing is negative
  • Single gene testing: Sanger sequencing of PPIB (5 exons and adjacent intronic sequences) can confirm suspected mutations (dijk2009ppibmutationscause pages 2-3)
  • Confirmation: Western blot analysis using anti-CyPB antibodies can confirm absence or reduction of CyPB protein (dijk2009ppibmutationscause pages 3-6, pyott2011mutationsinppib pages 5-6)

Differential Diagnosis

  • OI type VII (CRTAP mutations): Similar phenotype but typically more severe, with rhizomelia
  • OI type VIII (P3H1/LEPRE1 mutations): Similar phenotype, generally more severe
  • OI types I–IV (COL1A1/COL1A2 mutations): Dominant inheritance pattern
  • OI type X (SERPINH1/HSP47 mutations): Autosomal recessive, severe
  • Bruck syndrome (FKBP10/PLOD2 mutations): OI with congenital contractures

Key distinguishing features of OI type IX include: autosomal recessive inheritance, absence of rhizomelia, generally milder than types VII/VIII, partial preservation of Pro986 3-hydroxylation in some patients, and CRTAP/P3H1 proteins remaining stable despite CyPB deficiency (dijk2009ppibmutationscause pages 3-6, cotti2025moleculardriversof pages 9-10).


11. Outcome/Prognosis

Survival and Mortality

  • Severity spectrum: Ranges from perinatal lethal (pregnancies terminated at 16–22 weeks, or neonatal death) to long-term survival with severe disability (dijk2009ppibmutationscause pages 2-3, pyott2011mutationsinppib pages 1-2)
  • Surviving patients: Some patients survive into childhood and beyond with moderate to severe OI. One patient was alive and wheelchair-dependent at age 8 years (dijk2009ppibmutationscause pages 2-3); another (Pyott P3) had stable scoliosis at age 16 years (pyott2011mutationsinppib pages 3-4)
  • Mouse model lifespan: Ppib−/− mice have a typical lifespan of 40–50 weeks, compared to normal mouse lifespan, indicating significant life-shortening effect of CyPB deficiency (choi2009severeosteogenesisimperfecta pages 2-3)

Morbidity and Function

  • Wheelchair dependence in surviving severely affected patients (dijk2009ppibmutationscause pages 2-3)
  • Progressive skeletal deformity limiting mobility
  • Chronic bone pain requiring management
  • Respiratory compromise potential from thoracic deformity

Complications

  • Progressive kyphoscoliosis
  • Respiratory insufficiency (major cause of mortality in severe OI generally) (jovanovic2024updateonthe pages 16-17)
  • Potential cardiovascular complications as in other severe OI types (jovanovic2024updateonthe pages 16-17)

12. Treatment

Pharmacotherapy

Bisphosphonates (MAXO:0001298 – bisphosphonate administration): - Intravenous pamidronate has been directly used in reported OI type IX patients. One patient (P2-1) received 0.5 mg/kg/day IV pamidronate for 3 consecutive days every 6 weeks, starting at age 2 weeks; another (P2-2) commenced pamidronate shortly after birth (dijk2009ppibmutationscause pages 2-3) - Bisphosphonates bind to hydroxyapatite crystals and induce osteoclast apoptosis, reducing bone resorption and increasing bone mass (etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8) - IV bisphosphonate therapy has positive effects on skeletal pain, bone mass, and mobility in OI generally, though reduction in fracture rate has not been conclusively demonstrated in controlled trials (etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8, dwan2016bisphosphonatetherapyfor pages 5-6) - It is not clear whether patients with recessive OI respond identically to those with dominant OI (alharbi2016asystematicoverview pages 5-6)

Denosumab: - A monoclonal antibody against RANKL showing promise in OI, particularly types III, IV, and VI, by increasing BMD and reducing fracture risk (kresnadi2024theroleof pages 8-9) - No specific data on denosumab use in OI type IX have been reported

Other agents under investigation: - Sclerostin inhibitors (anti-sclerostin antibodies) have shown increases in bone formation rate and bone mass in murine models (dinulescu2024newperspectivesof pages 2-4) - Teriparatide (recombinant PTH) and TGF-β antibodies are being explored (dinulescu2024newperspectivesof pages 2-4) - 4-Phenylbutyrate (4-PBA) has shown amelioration of ER stress/UPR in OI fibroblasts in vitro (jovanovic2024updateonthe pages 15-16)

Surgical and Interventional (MAXO:0000004 – surgical procedure)

  • Intramedullary rodding with telescopic rods for severe long-bone bowing and fracture stabilization (dinulescu2024newperspectivesof pages 2-4, kresnadi2024theroleof pages 5-7)
  • Orthopedic management of fractures

Supportive and Rehabilitative (MAXO:0000950 – physical therapy)

  • Physical therapy and occupational therapy for mobility optimization (etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8, kresnadi2024theroleof pages 5-7)
  • Muscle strengthening provides osteoanabolic stimulus (etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8)
  • Wheelchair and assistive device provision
  • Pain management

Experimental Therapies

  • Gene therapy approaches using viral vectors and CRISPR are being explored for OI generally but are at preclinical stages (dinulescu2024newperspectivesof pages 2-4, alharbi2016asystematicoverview pages 5-6)
  • Bone marrow/mesenchymal stem cell transplantation shows promise in animal models (dinulescu2024newperspectivesof pages 2-4)
  • No OI type IX-specific clinical trials were identified in the current search

13. Prevention

Primary Prevention

  • No primary prevention is available for this genetic disorder

Genetic Counseling (MAXO:0000079 – genetic counseling)

  • Genetic counseling is essential for families with affected individuals
  • Carrier testing can identify heterozygous parents for recurrence risk assessment (25% per pregnancy for carrier couples) (pyott2011mutationsinppib pages 3-4)
  • Preimplantation genetic diagnosis (PGD) and prenatal diagnosis via chorionic villus sampling or amniocentesis are available for families with known mutations (dijk2009ppibmutationscause pages 2-3)

Prenatal Screening

  • Prenatal ultrasound at 20 weeks gestation can detect skeletal abnormalities including fractures and bowing (dijk2009ppibmutationscause pages 2-3)
  • Molecular testing of chorionic villus cells can confirm diagnosis when family mutations are known; overmodification of collagen type I in chorionic villi cells was used for prenatal diagnosis in one family (dijk2009ppibmutationscause pages 2-3)

Tertiary Prevention

  • Regular bisphosphonate therapy during growth to maximize bone mass
  • Fracture prevention strategies including safe environments and activity modification
  • Regular monitoring of bone density, growth, and spinal alignment

14. Other Species / Natural Disease

No naturally occurring PPIB-mutation OI has been documented in companion animals or wildlife. The orthologous gene Ppib in mouse (Mus musculus, NCBI Taxon: 10090) has been studied extensively through knockout models.


15. Model Organisms

Ppib Knockout Mouse (Ppib−/−)

Two independent Ppib knockout mouse models have been generated and characterized:

Choi et al. (2009) model (choi2009severeosteogenesisimperfecta pages 1-2, choi2009severeosteogenesisimperfecta pages 2-3): - Generated using Cre/lox system targeting exon 3 of Ppib - Phenotype: kyphosis appearing at 8 weeks of age and progressing with age; severe osteoporosis; reduced bone density on DXA; abnormal collagen fibril morphology (fibrils ~1.45× wider than normal, 114.6 nm vs. 78.6 nm); absence of rhizomelia; loose/thin skin; reduced body mass; lifespan approximately 40–50 weeks - Molecular findings: essentially absent Pro986 3-hydroxylation; substantially reduced P3H1 levels (while CRTAP unaffected); impaired procollagen localization to Golgi; procollagen accumulation in ER

Cabral/Marini et al. (2014) model (cabral2014abnormaltypei pages 1-2, cabral2014abnormaltypei pages 2-3, cabral2014abnormaltypei pages 3-6): - Phenotype: small body size (~25% less body weight); reduced femoral aBMD and BV/TV; reduced mechanical properties with 48% less energy required to fracture, 37% reduced stiffness; dramatically increased brittleness (77% reduced post-yield displacement, 89% reduced plastic energy); deformed rib cage; kyphosis - Molecular findings: only 2–11% residual prolyl 3-hydroxylation; slower collagen folding but treatment with cyclosporine A (CsA) caused further delay, suggesting existence of another collagen PPIase; site-specific underhydroxylation at K87 (~20% unhydroxylated vs. <1% wild-type) and K933; increased underhydroxylated crosslinks; altered HP/LP crosslink ratio; decreased collagen deposition into matrix; abnormal fibril structure

Phenotype Recapitulation

Both models faithfully recapitulate the human OI type IX phenotype, including bone fragility, osteoporosis, kyphosis, growth deficiency, abnormal collagen fibrils, and absence of rhizomelia (choi2009severeosteogenesisimperfecta pages 1-2). The models have been essential for understanding the molecular pathophysiology, particularly the dual role of CyPB in both prolyl 3-hydroxylation and collagen crosslinking regulation.

Model Limitations

  • Mouse lifespan does not fully model the chronic decades-long disease course in humans
  • Some molecular findings differ between human patients and mice (e.g., complete absence of Pro986 3-hydroxylation in mice vs. partial preservation in some human patients) (cotti2025moleculardriversof pages 9-10)
  • No zebrafish or other non-mammalian models for OI type IX have been reported

Resources

  • International Mouse Phenotyping Consortium (IMPC) for Ppib mutant mice
  • Model organism databases: MGI (Mouse Genome Informatics), IMSR (International Mouse Strain Resource)

Summary

Osteogenesis Imperfecta Type IX is an ultra-rare autosomal recessive bone fragility disorder caused by loss-of-function mutations in PPIB, encoding cyclophilin B (CyPB). The disease was first described in 2009 and fewer than 10 families have been reported in the literature (dijk2009ppibmutationscause pages 1-2, pyott2011mutationsinppib pages 3-4). CyPB is a multifunctional ER-resident protein that serves as a peptidyl-prolyl cis-trans isomerase, molecular chaperone, and component of the P3H1/CRTAP/CyPB prolyl 3-hydroxylation complex (jovanovic2024updateonthe pages 8-9, dijk2009ppibmutationscause pages 1-2). Its deficiency leads to delayed collagen folding, overmodification, impaired crosslinking, ER stress, and ultimately fragile bone with diminished mechanical properties (cabral2014abnormaltypei pages 1-2, etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4). The clinical phenotype spans moderate to perinatal lethal severity, with features including multiple fractures, severe short stature, bowed long bones, kyphoscoliosis, and gray sclerae (dijk2009ppibmutationscause pages 2-3, cotti2025moleculardriversof pages 9-10). Current management relies on bisphosphonate therapy, orthopedic intervention, and supportive care, with novel therapeutic approaches including gene therapy and anti-sclerostin antibodies under investigation for OI broadly (dinulescu2024newperspectivesof pages 2-4, etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8). Ppib knockout mice provide valuable preclinical models that faithfully recapitulate the human disease phenotype (cabral2014abnormaltypei pages 2-3, choi2009severeosteogenesisimperfecta pages 1-2).

References

  1. (jovanovic2024updateonthe pages 8-9): Milena Jovanovic and Joan C. Marini. Update on the genetics of osteogenesis imperfecta. Calcified Tissue International, 115:891-914, Aug 2024. URL: https://doi.org/10.1007/s00223-024-01266-5, doi:10.1007/s00223-024-01266-5. This article has 76 citations and is from a peer-reviewed journal.

  2. (dijk2009ppibmutationscause pages 1-2): Fleur S. van Dijk, Isabel M. Nesbitt, Eline H. Zwikstra, Peter G.J. Nikkels, Sander R. Piersma, Silvina A. Fratantoni, Connie R. Jimenez, Margriet Huizer, Alice C. Morsman, Jan M. Cobben, Mirjam H.H. van Roij, Mariet W. Elting, Jonathan I.M.L. Verbeke, Liliane C.D. Wijnaendts, Nick J. Shaw, Wolfgang Högler, Carole McKeown, Erik A. Sistermans, Ann Dalton, Hanne Meijers-Heijboer, and Gerard Pals. Ppib mutations cause severe osteogenesis imperfecta. American journal of human genetics, 85 4:521-7, Oct 2009. URL: https://doi.org/10.1016/j.ajhg.2009.09.001, doi:10.1016/j.ajhg.2009.09.001. This article has 354 citations and is from a highest quality peer-reviewed journal.

  3. (etich2020osteogenesisimperfecta—pathophysiologyand pages 2-4): Julia Etich, Lennart Leßmeier, Mirko Rehberg, Helge Sill, Frank Zaucke, Christian Netzer, and Oliver Semler. Osteogenesis imperfecta—pathophysiology and therapeutic options. Molecular and Cellular Pediatrics, Aug 2020. URL: https://doi.org/10.1186/s40348-020-00101-9, doi:10.1186/s40348-020-00101-9. This article has 113 citations.

  4. (pyott2011mutationsinppib pages 1-2): Shawna M. Pyott, Ulrike Schwarze, Helena E. Christiansen, Melanie G. Pepin, Dru F. Leistritz, Richard Dineen, Catharine Harris, Barbara K. Burton, Brad Angle, Katherine Kim, Michael D. Sussman, MaryAnn Weis, David R. Eyre, David W. Russell, Kevin J. McCarthy, Robert D. Steiner, and Peter H. Byers. Mutations in ppib (cyclophilin b) delay type i procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes. Human molecular genetics, 20 8:1595-609, Apr 2011. URL: https://doi.org/10.1093/hmg/ddr037, doi:10.1093/hmg/ddr037. This article has 164 citations and is from a domain leading peer-reviewed journal.

  5. (pyott2011mutationsinppib pages 2-3): Shawna M. Pyott, Ulrike Schwarze, Helena E. Christiansen, Melanie G. Pepin, Dru F. Leistritz, Richard Dineen, Catharine Harris, Barbara K. Burton, Brad Angle, Katherine Kim, Michael D. Sussman, MaryAnn Weis, David R. Eyre, David W. Russell, Kevin J. McCarthy, Robert D. Steiner, and Peter H. Byers. Mutations in ppib (cyclophilin b) delay type i procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes. Human molecular genetics, 20 8:1595-609, Apr 2011. URL: https://doi.org/10.1093/hmg/ddr037, doi:10.1093/hmg/ddr037. This article has 164 citations and is from a domain leading peer-reviewed journal.

  6. (pyott2011mutationsinppib pages 3-4): Shawna M. Pyott, Ulrike Schwarze, Helena E. Christiansen, Melanie G. Pepin, Dru F. Leistritz, Richard Dineen, Catharine Harris, Barbara K. Burton, Brad Angle, Katherine Kim, Michael D. Sussman, MaryAnn Weis, David R. Eyre, David W. Russell, Kevin J. McCarthy, Robert D. Steiner, and Peter H. Byers. Mutations in ppib (cyclophilin b) delay type i procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes. Human molecular genetics, 20 8:1595-609, Apr 2011. URL: https://doi.org/10.1093/hmg/ddr037, doi:10.1093/hmg/ddr037. This article has 164 citations and is from a domain leading peer-reviewed journal.

  7. (dijk2009ppibmutationscause pages 2-3): Fleur S. van Dijk, Isabel M. Nesbitt, Eline H. Zwikstra, Peter G.J. Nikkels, Sander R. Piersma, Silvina A. Fratantoni, Connie R. Jimenez, Margriet Huizer, Alice C. Morsman, Jan M. Cobben, Mirjam H.H. van Roij, Mariet W. Elting, Jonathan I.M.L. Verbeke, Liliane C.D. Wijnaendts, Nick J. Shaw, Wolfgang Högler, Carole McKeown, Erik A. Sistermans, Ann Dalton, Hanne Meijers-Heijboer, and Gerard Pals. Ppib mutations cause severe osteogenesis imperfecta. American journal of human genetics, 85 4:521-7, Oct 2009. URL: https://doi.org/10.1016/j.ajhg.2009.09.001, doi:10.1016/j.ajhg.2009.09.001. This article has 354 citations and is from a highest quality peer-reviewed journal.

  8. (cotti2025moleculardriversof pages 9-10): Silvia Cotti, Wendy Pérez Franco, and Antonella Forlino. Molecular drivers of osteogenesis imperfecta: a cellular and extracellular collagen disease. Clinical Science, 139(24):1733-1768, Dec 2025. URL: https://doi.org/10.1042/cs20255642, doi:10.1042/cs20255642. This article has 3 citations and is from a peer-reviewed journal.

  9. (cabral2014abnormaltypei pages 1-2): Wayne A. Cabral, Irina Perdivara, MaryAnn Weis, Masahiko Terajima, Angela R. Blissett, Weizhong Chang, Joseph E. Perosky, Elena N. Makareeva, Edward L. Mertz, Sergey Leikin, Kenneth B. Tomer, Kenneth M. Kozloff, David R. Eyre, Mitsuo Yamauchi, and Joan C. Marini. Abnormal type i collagen post-translational modification and crosslinking in a cyclophilin b ko mouse model of recessive osteogenesis imperfecta. PLoS Genetics, 10:e1004465, Jun 2014. URL: https://doi.org/10.1371/journal.pgen.1004465, doi:10.1371/journal.pgen.1004465. This article has 143 citations and is from a domain leading peer-reviewed journal.

  10. (cabral2014abnormaltypei pages 2-3): Wayne A. Cabral, Irina Perdivara, MaryAnn Weis, Masahiko Terajima, Angela R. Blissett, Weizhong Chang, Joseph E. Perosky, Elena N. Makareeva, Edward L. Mertz, Sergey Leikin, Kenneth B. Tomer, Kenneth M. Kozloff, David R. Eyre, Mitsuo Yamauchi, and Joan C. Marini. Abnormal type i collagen post-translational modification and crosslinking in a cyclophilin b ko mouse model of recessive osteogenesis imperfecta. PLoS Genetics, 10:e1004465, Jun 2014. URL: https://doi.org/10.1371/journal.pgen.1004465, doi:10.1371/journal.pgen.1004465. This article has 143 citations and is from a domain leading peer-reviewed journal.

  11. (choi2009severeosteogenesisimperfecta pages 1-2): Jae Won Choi, Shari L. Sutor, Lonn Lindquist, Glenda L. Evans, Benjamin J. Madden, H. Robert Bergen, Theresa E. Hefferan, Michael J. Yaszemski, and Richard J. Bram. Severe osteogenesis imperfecta in cyclophilin b–deficient mice. PLoS Genetics, 5:e1000750, Dec 2009. URL: https://doi.org/10.1371/journal.pgen.1000750, doi:10.1371/journal.pgen.1000750. This article has 123 citations and is from a domain leading peer-reviewed journal.

  12. (etich2020osteogenesisimperfecta—pathophysiologyand pages 7-8): Julia Etich, Lennart Leßmeier, Mirko Rehberg, Helge Sill, Frank Zaucke, Christian Netzer, and Oliver Semler. Osteogenesis imperfecta—pathophysiology and therapeutic options. Molecular and Cellular Pediatrics, Aug 2020. URL: https://doi.org/10.1186/s40348-020-00101-9, doi:10.1186/s40348-020-00101-9. This article has 113 citations.

  13. (kresnadi2024theroleof pages 5-7): Agus Kresnadi, Tri Wahyu Martanto, Arif Zulkarnain, and Hizbillah Yazid. The role of denosumab and bisphosphonate in osteogenesis imperfecta: a literature review. Salud, Ciencia y Tecnología, 4:894, Apr 2024. URL: https://doi.org/10.56294/saludcyt2024894, doi:10.56294/saludcyt2024894. This article has 1 citations.

  14. (pyott2011mutationsinppib pages 4-5): Shawna M. Pyott, Ulrike Schwarze, Helena E. Christiansen, Melanie G. Pepin, Dru F. Leistritz, Richard Dineen, Catharine Harris, Barbara K. Burton, Brad Angle, Katherine Kim, Michael D. Sussman, MaryAnn Weis, David R. Eyre, David W. Russell, Kevin J. McCarthy, Robert D. Steiner, and Peter H. Byers. Mutations in ppib (cyclophilin b) delay type i procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes. Human molecular genetics, 20 8:1595-609, Apr 2011. URL: https://doi.org/10.1093/hmg/ddr037, doi:10.1093/hmg/ddr037. This article has 164 citations and is from a domain leading peer-reviewed journal.

  15. (choi2009severeosteogenesisimperfecta pages 2-3): Jae Won Choi, Shari L. Sutor, Lonn Lindquist, Glenda L. Evans, Benjamin J. Madden, H. Robert Bergen, Theresa E. Hefferan, Michael J. Yaszemski, and Richard J. Bram. Severe osteogenesis imperfecta in cyclophilin b–deficient mice. PLoS Genetics, 5:e1000750, Dec 2009. URL: https://doi.org/10.1371/journal.pgen.1000750, doi:10.1371/journal.pgen.1000750. This article has 123 citations and is from a domain leading peer-reviewed journal.

  16. (choi2009severeosteogenesisimperfecta pages 3-5): Jae Won Choi, Shari L. Sutor, Lonn Lindquist, Glenda L. Evans, Benjamin J. Madden, H. Robert Bergen, Theresa E. Hefferan, Michael J. Yaszemski, and Richard J. Bram. Severe osteogenesis imperfecta in cyclophilin b–deficient mice. PLoS Genetics, 5:e1000750, Dec 2009. URL: https://doi.org/10.1371/journal.pgen.1000750, doi:10.1371/journal.pgen.1000750. This article has 123 citations and is from a domain leading peer-reviewed journal.

  17. (dijk2009ppibmutationscause pages 3-6): Fleur S. van Dijk, Isabel M. Nesbitt, Eline H. Zwikstra, Peter G.J. Nikkels, Sander R. Piersma, Silvina A. Fratantoni, Connie R. Jimenez, Margriet Huizer, Alice C. Morsman, Jan M. Cobben, Mirjam H.H. van Roij, Mariet W. Elting, Jonathan I.M.L. Verbeke, Liliane C.D. Wijnaendts, Nick J. Shaw, Wolfgang Högler, Carole McKeown, Erik A. Sistermans, Ann Dalton, Hanne Meijers-Heijboer, and Gerard Pals. Ppib mutations cause severe osteogenesis imperfecta. American journal of human genetics, 85 4:521-7, Oct 2009. URL: https://doi.org/10.1016/j.ajhg.2009.09.001, doi:10.1016/j.ajhg.2009.09.001. This article has 354 citations and is from a highest quality peer-reviewed journal.

  18. (pyott2011mutationsinppib pages 5-6): Shawna M. Pyott, Ulrike Schwarze, Helena E. Christiansen, Melanie G. Pepin, Dru F. Leistritz, Richard Dineen, Catharine Harris, Barbara K. Burton, Brad Angle, Katherine Kim, Michael D. Sussman, MaryAnn Weis, David R. Eyre, David W. Russell, Kevin J. McCarthy, Robert D. Steiner, and Peter H. Byers. Mutations in ppib (cyclophilin b) delay type i procollagen chain association and result in perinatal lethal to moderate osteogenesis imperfecta phenotypes. Human molecular genetics, 20 8:1595-609, Apr 2011. URL: https://doi.org/10.1093/hmg/ddr037, doi:10.1093/hmg/ddr037. This article has 164 citations and is from a domain leading peer-reviewed journal.

  19. (cotti2025moleculardriversof pages 7-9): Silvia Cotti, Wendy Pérez Franco, and Antonella Forlino. Molecular drivers of osteogenesis imperfecta: a cellular and extracellular collagen disease. Clinical Science, 139(24):1733-1768, Dec 2025. URL: https://doi.org/10.1042/cs20255642, doi:10.1042/cs20255642. This article has 3 citations and is from a peer-reviewed journal.

  20. (cabral2014abnormaltypei pages 12-13): Wayne A. Cabral, Irina Perdivara, MaryAnn Weis, Masahiko Terajima, Angela R. Blissett, Weizhong Chang, Joseph E. Perosky, Elena N. Makareeva, Edward L. Mertz, Sergey Leikin, Kenneth B. Tomer, Kenneth M. Kozloff, David R. Eyre, Mitsuo Yamauchi, and Joan C. Marini. Abnormal type i collagen post-translational modification and crosslinking in a cyclophilin b ko mouse model of recessive osteogenesis imperfecta. PLoS Genetics, 10:e1004465, Jun 2014. URL: https://doi.org/10.1371/journal.pgen.1004465, doi:10.1371/journal.pgen.1004465. This article has 143 citations and is from a domain leading peer-reviewed journal.

  21. (cabral2014abnormaltypei pages 6-8): Wayne A. Cabral, Irina Perdivara, MaryAnn Weis, Masahiko Terajima, Angela R. Blissett, Weizhong Chang, Joseph E. Perosky, Elena N. Makareeva, Edward L. Mertz, Sergey Leikin, Kenneth B. Tomer, Kenneth M. Kozloff, David R. Eyre, Mitsuo Yamauchi, and Joan C. Marini. Abnormal type i collagen post-translational modification and crosslinking in a cyclophilin b ko mouse model of recessive osteogenesis imperfecta. PLoS Genetics, 10:e1004465, Jun 2014. URL: https://doi.org/10.1371/journal.pgen.1004465, doi:10.1371/journal.pgen.1004465. This article has 143 citations and is from a domain leading peer-reviewed journal.

  22. (jovanovic2024updateonthe pages 15-16): Milena Jovanovic and Joan C. Marini. Update on the genetics of osteogenesis imperfecta. Calcified Tissue International, 115:891-914, Aug 2024. URL: https://doi.org/10.1007/s00223-024-01266-5, doi:10.1007/s00223-024-01266-5. This article has 76 citations and is from a peer-reviewed journal.

  23. (jovanovic2024updateonthe pages 19-20): Milena Jovanovic and Joan C. Marini. Update on the genetics of osteogenesis imperfecta. Calcified Tissue International, 115:891-914, Aug 2024. URL: https://doi.org/10.1007/s00223-024-01266-5, doi:10.1007/s00223-024-01266-5. This article has 76 citations and is from a peer-reviewed journal.

  24. (jovanovic2024updateonthe pages 16-17): Milena Jovanovic and Joan C. Marini. Update on the genetics of osteogenesis imperfecta. Calcified Tissue International, 115:891-914, Aug 2024. URL: https://doi.org/10.1007/s00223-024-01266-5, doi:10.1007/s00223-024-01266-5. This article has 76 citations and is from a peer-reviewed journal.

  25. (chetty2021theevolutionof pages 5-6): Manogari Chetty, Imaan Amina Roomaney, and Peter Beighton. The evolution of the nosology of osteogenesis imperfecta. Clinical Genetics, 99:42-52, Nov 2021. URL: https://doi.org/10.1111/cge.13846, doi:10.1111/cge.13846. This article has 48 citations and is from a peer-reviewed journal.

  26. (dijk2014osteogenesisimperfectaclinical pages 5-7): F.S. Van Dijk and D.O. Sillence. Osteogenesis imperfecta: clinical diagnosis, nomenclature and severity assessment. American Journal of Medical Genetics. Part a, 164:1470-1481, Apr 2014. URL: https://doi.org/10.1002/ajmg.a.36545, doi:10.1002/ajmg.a.36545. This article has 1005 citations and is from a peer-reviewed journal.

  27. (dinulescu2024newperspectivesof pages 2-4): Alexandru Dinulescu, Alexandru-Sorin Păsărică, Mădălina Carp, Andrei Dușcă, Irina Dijmărescu, Mirela Luminița Pavelescu, Daniela Păcurar, and Alexandru Ulici. New perspectives of therapies in osteogenesis imperfecta—a literature review. Journal of Clinical Medicine, 13:1065, Feb 2024. URL: https://doi.org/10.3390/jcm13041065, doi:10.3390/jcm13041065. This article has 25 citations.

  28. (dwan2016bisphosphonatetherapyfor pages 5-6): Kerry Dwan, Carrie A Phillipi, Robert D Steiner, and Donald Basel. Bisphosphonate therapy for osteogenesis imperfecta. The Cochrane database of systematic reviews, 10:CD005088, Oct 2016. URL: https://doi.org/10.1002/14651858.cd005088.pub4, doi:10.1002/14651858.cd005088.pub4. This article has 559 citations.

  29. (alharbi2016asystematicoverview pages 5-6): Samir Abdulkarim Alharbi. A systematic overview of osteogenesis imperfecta. ArXiv, 5:1-9, Jan 2016. URL: https://doi.org/10.4172/2168-9547.1000150, doi:10.4172/2168-9547.1000150. This article has 44 citations.

  30. (kresnadi2024theroleof pages 8-9): Agus Kresnadi, Tri Wahyu Martanto, Arif Zulkarnain, and Hizbillah Yazid. The role of denosumab and bisphosphonate in osteogenesis imperfecta: a literature review. Salud, Ciencia y Tecnología, 4:894, Apr 2024. URL: https://doi.org/10.56294/saludcyt2024894, doi:10.56294/saludcyt2024894. This article has 1 citations.

  31. (cabral2014abnormaltypei pages 3-6): Wayne A. Cabral, Irina Perdivara, MaryAnn Weis, Masahiko Terajima, Angela R. Blissett, Weizhong Chang, Joseph E. Perosky, Elena N. Makareeva, Edward L. Mertz, Sergey Leikin, Kenneth B. Tomer, Kenneth M. Kozloff, David R. Eyre, Mitsuo Yamauchi, and Joan C. Marini. Abnormal type i collagen post-translational modification and crosslinking in a cyclophilin b ko mouse model of recessive osteogenesis imperfecta. PLoS Genetics, 10:e1004465, Jun 2014. URL: https://doi.org/10.1371/journal.pgen.1004465, doi:10.1371/journal.pgen.1004465. This article has 143 citations and is from a domain leading peer-reviewed journal.

Artifacts