Nipah virus disease is a zoonotic infection caused by Nipah virus, a henipavirus in the family Paramyxoviridae, whose natural reservoir is fruit bats of the genus Pteropus. Human infection follows exposure to infected bats, intermediate hosts such as pigs, or food contaminated with bat secretions (notably raw date palm sap), and produces a severe febrile illness that can progress to encephalitis, respiratory distress, and death with high case-fatality.
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name: Nipah Virus Disease
creation_date: '2026-07-24T23:11:02Z'
category: Infectious Disease
description: >-
Nipah virus disease is a zoonotic infection caused by Nipah virus, a
henipavirus in the family Paramyxoviridae, whose natural reservoir is
fruit bats of the genus Pteropus. Human infection follows exposure to
infected bats, intermediate hosts such as pigs, or food contaminated
with bat secretions (notably raw date palm sap), and produces a severe
febrile illness that can progress to encephalitis, respiratory distress,
and death with high case-fatality.
disease_term:
term:
id: MONDO:0020499
label: Nipah virus disease
preferred_term: Nipah Virus Disease
parents:
- Viral Encephalitis
- Zoonosis
infectious_agent:
- name: Nipah virus
infectious_agent_term:
preferred_term: Nipah virus
term:
id: NCBITaxon:3052225
label: Henipavirus nipahense
description: >-
Nipah virus is an enveloped, negative-sense single-stranded RNA virus
of the genus Henipavirus (family Paramyxoviridae) whose natural reservoir
is Pteropus fruit bats.
evidence:
- reference: PMID:38399954
reference_title: "Nipah Virus: A Multidimensional Update."
supports: SUPPORT
evidence_source: OTHER
snippet: "Nipah virus (NiV) is an emerging zoonotic paramyxovirus to which is attributed numerous high mortality outbreaks in South and South-East Asia"
explanation: The review identifies NiV as a zoonotic paramyxovirus responsible for high-mortality outbreaks.
- reference: PMID:38399954
reference_title: "Nipah Virus: A Multidimensional Update."
supports: SUPPORT
evidence_source: OTHER
snippet: "The natural reservoir of NiV is the Pteropus bat species, which covers a wide geographical distribution extending over Asia, Oceania, and Africa."
explanation: The review names Pteropus fruit bats as the natural reservoir of Nipah virus.
agent_life_cycle:
description: >-
Nipah virus is maintained in nature in Pteropus fruit bat reservoirs and
spills over to humans directly or via intermediate mammalian hosts.
hosts:
- preferred_term: human
term:
id: NCBITaxon:9606
label: Homo sapiens
role: incidental host
- preferred_term: Pteropus fruit bat
term:
id: NCBITaxon:9401
label: Pteropus
role: natural reservoir
transmission:
- name: Foodborne transmission via contaminated date palm sap
description: >-
Consumption of raw date palm sap contaminated by fruit bat saliva or
urine is a major route of human infection in Bangladesh.
evidence:
- reference: PMID:38399954
reference_title: "Nipah Virus: A Multidimensional Update."
supports: SUPPORT
evidence_source: OTHER
snippet: "in Bangladesh, the viral transmission occurs directly from bat to human mainly by ingestion of contaminated fresh date palm sap."
explanation: The review attributes Bangladeshi human infection primarily to ingestion of contaminated date palm sap.
- reference: PMID:39119137
reference_title: "A systematic review on Nipah virus: global molecular epidemiology and medical countermeasures development."
supports: SUPPORT
evidence_source: OTHER
snippet: "Transmission routes vary by country, primarily through pigs in Malaysia, consumption of date palm juice in Bangladesh, and human-to-human in India."
explanation: The systematic review lists date palm juice consumption in Bangladesh as a primary transmission route.
- name: Intermediate host (pig) transmission
description: >-
Close contact with infected pigs drove the initial Malaysian outbreak,
with pigs acting as an amplifying intermediate host.
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Ninety-three percent had had direct contact with pigs, usually in the two weeks before the onset of illness, suggesting that there was direct viral transmission from pigs to humans and a short incubation period."
explanation: In the Malaysian outbreak 93% of patients had direct pig contact, indicating pig-to-human transmission.
- reference: PMID:38399954
reference_title: "Nipah Virus: A Multidimensional Update."
supports: SUPPORT
evidence_source: OTHER
snippet: "Occasionally, human outbreaks have required the presence of an intermediate amplification mammal host between bat and humans."
explanation: The review notes that an intermediate amplifying mammalian host can bridge bat-to-human transmission.
- name: Human-to-human transmission
description: >-
Person-to-person spread occurs through close contact with respiratory
secretions and body fluids, especially in healthcare and caregiving
settings.
evidence:
- reference: PMID:39292378
reference_title: "Recent Advances of Nipah Virus Disease: Pathobiology to Treatment and Vaccine Advancement."
supports: SUPPORT
evidence_source: OTHER
snippet: "It can spread between humans through contact with body fluids."
explanation: The review states that Nipah virus can spread between humans via body-fluid contact.
- reference: PMID:39119137
reference_title: "A systematic review on Nipah virus: global molecular epidemiology and medical countermeasures development."
supports: SUPPORT
evidence_source: OTHER
snippet: "Transmission routes vary by country, primarily through pigs in Malaysia, consumption of date palm juice in Bangladesh, and human-to-human in India."
explanation: The systematic review documents human-to-human transmission in India.
pathophysiology:
- name: Ephrin-B2/B3 receptor-mediated cell entry
biological_scale: MOLECULAR
description: >-
The Nipah virus attachment glycoprotein engages the host ephrin-B2 and
ephrin-B3 receptors to mediate entry into host cells. Because ephrin-B2 is
evolutionarily conserved and widely expressed on vascular endothelium, and
ephrin-B3 on neurons, the tissue distribution of these receptors is what
determines the endothelial and neuronal tropism that drives the rest of the
disease, and also underlies the virus's broad host-species range.
biological_processes:
- preferred_term: symbiont entry into host cell
term:
id: GO:0046718
label: symbiont entry into host cell
molecular_functions:
- preferred_term: ephrin-B2/B3 acting as the henipavirus entry receptor
term:
id: GO:0001618
label: virus receptor activity
downstream:
- target: Endothelial tropism and systemic vasculitis
description: >-
Ephrin-B2 is widely expressed on vascular endothelium, so receptor-mediated
entry establishes the endothelial infection underlying systemic vasculitis.
- target: Central nervous system invasion
description: >-
Ephrin-B3 expression on neurons provides the receptor basis for direct
neuronal infection of the central nervous system.
- target: Type I interferon signaling antagonism
description: >-
Once inside the cell the virus expresses the accessory proteins that
disable the host type I interferon response.
evidence:
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "The virus enters the host cells through Ephrin B2/B3 receptors"
explanation: States the receptor pair mediating Nipah virus entry into host cells.
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "inherent ability to use the evolutionarily conserved and widely expressed cellular receptor Ephrin B2 for entry"
explanation: Establishes that ephrin-B2 is conserved and widely expressed, which is what makes receptor distribution determine tropism.
- reference: PMID:24130486
reference_title: "Crystal structure of the Hendra virus attachment G glycoprotein bound to a potent cross-reactive neutralizing human monoclonal antibody."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Henipavirus entry is initiated by the attachment of the G envelope glycoprotein to host cell membrane receptors."
explanation: Identifies the viral attachment glycoprotein G engaging host cell receptors as the initiating step of henipavirus entry.
- name: Type I interferon signaling antagonism
biological_scale: MOLECULAR
description: >-
Nipah virus accessory proteins expressed from the P gene antagonize type I
interferon signaling by binding and sequestering STAT1 and STAT2. The V
protein induces cytoplasmic high-molecular-weight STAT-containing complexes,
and the phosphoprotein P sequesters STAT1/STAT2 into viral inclusion bodies;
both prevent STAT activation and nuclear translocation. Blocking the innate
antiviral response is what permits the virus to disseminate systemically
before an effective interferon response is mounted.
biological_processes:
- preferred_term: negative regulation of type I interferon-mediated signaling pathway
modifier: INCREASED
term:
id: GO:0060339
label: negative regulation of type I interferon-mediated signaling pathway
downstream:
- target: Systemic viral dissemination and febrile illness
description: >-
Suppression of the innate interferon response permits unchecked viral
replication and systemic spread.
evidence:
- reference: PMID:15279700
reference_title: "Host evasion by emerging paramyxoviruses: Hendra virus and Nipah virus v proteins inhibit interferon signaling."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Similar to other paramyxoviruses, Henipaviruses inhibit IFN signal transduction through a virus-encoded protein called V."
explanation: Establishes the V protein as the henipavirus-encoded inhibitor of interferon signal transduction.
- reference: PMID:15279700
reference_title: "Host evasion by emerging paramyxoviruses: Hendra virus and Nipah virus v proteins inhibit interferon signaling."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "This sequestration of STAT1 and STAT2 prevents STAT activation and blocks antiviral IFN signaling."
explanation: States the molecular consequence - STAT1/STAT2 sequestration prevents STAT activation and blocks antiviral interferon signaling.
- reference: PMID:36851768
reference_title: "Nipah Virus Impairs Autocrine IFN Signaling by Sequestering STAT1 and STAT2 into Inclusion Bodies."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "we show here that NiV can inhibit IFN-dependent antiviral signaling via a NiV P-dependent sequestration of STAT1 and STAT2 into viral IBs"
explanation: Adds the phosphoprotein P arm, sequestering STAT1/STAT2 into viral inclusion bodies, alongside the V-protein mechanism.
- reference: PMID:36851768
reference_title: "Nipah Virus Impairs Autocrine IFN Signaling by Sequestering STAT1 and STAT2 into Inclusion Bodies."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "the pathogenic potential of NiV is linked to its ability to block antiviral responses"
explanation: Links interferon antagonism directly to the pathogenic potential of the virus, which is why this node sits upstream of dissemination.
- name: Systemic viral dissemination and febrile illness
biological_scale: ORGANISM
description: >-
Unrestrained by the interferon response, the virus replicates in and spreads
through highly vascular tissues, producing a widespread multisystemic
vasculitis and the non-specific systemic febrile prodrome - fever, headache
and vomiting - that precedes organ-specific disease.
downstream:
- target: Endothelial tropism and systemic vasculitis
description: >-
Systemic spread through highly vascular tissues establishes the widespread
endothelial infection.
- target: Fever
description: Systemic viral replication produces the febrile response.
- target: Headache
description: Part of the non-specific systemic prodrome of acute infection.
- target: Vomiting
description: Part of the non-specific systemic prodrome of acute infection.
evidence:
- reference: PMID:19888339
reference_title: "A neutralizing human monoclonal antibody protects against lethal disease in a new ferret model of acute nipah virus infection."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: "The underlying pathology seen in the ferret closely resembles that seen in Nipah virus infected humans, characterized as a widespread multisystemic vasculitis, with virus replicating in highly vascular tissues including lung, spleen and brain, with recoverable virus from a variety of tissues."
explanation: |
Documents systemic dissemination with virus recoverable from multiple
tissues. MODEL_ORGANISM because the observation is in the ferret model,
though the authors state the pathology closely resembles human disease.
- name: Endothelial tropism and systemic vasculitis
biological_scale: TISSUE
cell_types:
- preferred_term: vascular endothelial cell
term:
id: CL:0000115
label: endothelial cell
- preferred_term: vascular smooth muscle cell
term:
id: CL:0000192
label: smooth muscle cell
description: >-
Nipah virus infects vascular endothelial and smooth muscle cells,
producing a systemic vasculitis with thrombosis and parenchymal necrosis,
especially in the central nervous system.
downstream:
- target: Syncytium formation
description: >-
Infection of vascular endothelium is the setting in which syncytial giant
cells arise; autopsy describes endothelial damage, necrosis and syncytial
giant cell formation together in affected vessels.
- target: Central nervous system invasion
description: >-
Vasculitis with thrombosis and parenchymal necrosis is most marked in the
central nervous system, accompanying direct neuronal infection.
- target: Pulmonary involvement and respiratory tract infection
description: >-
The same vascular changes involve the lungs, contributing to the pulmonary
arm of clade I disease.
evidence:
- reference: PMID:12466131
reference_title: "Nipah virus infection: pathology and pathogenesis of an emerging paramyxoviral zoonosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The main histopathological findings included a systemic vasculitis with extensive thrombosis and parenchymal necrosis, particularly in the central nervous system."
explanation: Autopsy findings from human cases show systemic vasculitis with thrombosis and necrosis.
- reference: PMID:12466131
reference_title: "Nipah virus infection: pathology and pathogenesis of an emerging paramyxoviral zoonosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "IHC analysis showed widespread presence of Nipah virus antigens in endothelial and smooth muscle cells of blood vessels."
explanation: Immunohistochemistry localizes Nipah antigen to vascular endothelial and smooth muscle cells.
- name: Central nervous system invasion
biological_scale: TISSUE
cell_types:
- preferred_term: neuron
term:
id: CL:0000540
label: neuron
description: >-
The virus infects neurons of the central nervous system, producing an
acute encephalitis alongside vasculitis-associated injury.
downstream:
- target: Encephalitis
description: >-
Direct neuronal infection with accompanying vasculitis produces the acute
encephalitis that defines symptomatic human Nipah virus disease.
- target: Reduced consciousness
description: >-
Encephalitic involvement of the brain stem underlies the reduced level of
consciousness documented in 55% of the Malaysian case series.
- target: Seizure
description: >-
Cortical involvement in acute Nipah encephalitis manifests clinically as
convulsions.
- target: Myoclonus
description: >-
Brain-stem and upper cervical cord involvement produces the distinctive
segmental myoclonus of Nipah encephalitis.
- target: Areflexia
description: >-
Brain-stem and upper cervical cord involvement produces areflexia.
- target: Hypotonia
description: >-
Brain-stem and upper cervical cord involvement produces hypotonia.
evidence:
- reference: PMID:12466131
reference_title: "Nipah virus infection: pathology and pathogenesis of an emerging paramyxoviral zoonosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Abundant viral antigens were also seen in various parenchymal cells, particularly in neurons."
explanation: Viral antigen is abundant in neurons, evidencing direct CNS neuronal infection.
- reference: PMID:38399954
reference_title: "Nipah Virus: A Multidimensional Update."
supports: SUPPORT
evidence_source: OTHER
snippet: "Human infection manifests as a rapidly progressive encephalitis accounting for extremely high mortality rates."
explanation: The review characterizes human Nipah infection as a rapidly progressive encephalitis.
- name: Syncytium formation
biological_scale: CELLULAR
description: >-
Nipah virus induces fusion of infected cells into multinucleated
syncytial giant cells, prominent in affected blood vessels.
evidence:
- reference: PMID:12466131
reference_title: "Nipah virus infection: pathology and pathogenesis of an emerging paramyxoviral zoonosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Endothelial cell damage, necrosis, and syncytial giant cell formation were seen in affected vessels."
explanation: Syncytial giant cells are observed in affected vessels of human autopsy tissue.
- name: Pulmonary involvement and respiratory tract infection
biological_scale: TISSUE
description: >-
Beyond the encephalitic arm, Nipah virus produces severe pulmonary
involvement with respiratory tract infection and vascular injury of the
lungs. This arm is clade-dependent and is the principal feature
distinguishing the Bangladesh/India clade I outbreaks, in which severe
respiratory disease accompanies encephalitis and facilitates
person-to-person transmission, from the Malaysian clade II outbreak, which
produced a largely pure encephalitic syndrome.
downstream:
- target: Respiratory distress
description: >-
Pulmonary infection and vascular injury of the lung manifest clinically as
respiratory difficulty and, at the severe end, acute respiratory distress
syndrome.
- target: Acute respiratory distress syndrome
description: >-
Severe pulmonary involvement progresses to the clinical and radiographic
picture of acute respiratory distress syndrome.
- target: Cough
description: >-
Respiratory tract infection manifests as cough, among the most common
presenting symptoms in the Bangladesh outbreaks.
evidence:
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Nipah virus infection produced rapidly progressive severe illness affecting the central nervous and respiratory systems."
explanation: Establishes the respiratory system, alongside the CNS, as a primary target of the infection.
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "including a severe respiratory component, appear distinct from clinical characteristics reported during earlier outbreaks in other countries."
explanation: Identifies the severe respiratory component as what distinguishes Bangladesh disease from the earlier Malaysian outbreak.
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "whereas many patients infected with NiV clade I had added severe pulmonary involvement"
explanation: Attributes severe pulmonary involvement specifically to clade I infection.
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "NiV clade II isolated cases led to a pure encephalitic syndrome (neurological symptoms without respiratory manifestations)"
explanation: The contrasting clade II picture, without respiratory manifestations, establishes that the pulmonary arm is clade-dependent.
- reference: PMID:37896758
reference_title: "Animal Models for Henipavirus Research."
supports: SUPPORT
evidence_source: OTHER
snippet: "Outbreaks of HeV and NiV have led to severe respiratory disease and encephalitis in humans and animals characterized by a high mortality rate."
explanation: Corroborates severe respiratory disease as a core outcome of henipavirus outbreaks alongside encephalitis.
phenotypes:
- name: Fever
category: Systemic
frequency: FREQUENT
phenotype_term:
preferred_term: Fever
term:
id: HP:0001945
label: Fever
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The main presenting features were fever, headache, dizziness, and vomiting."
explanation: |
Snippet supports the disease-phenotype association. Author wording "main
presenting features" maps to FREQUENT (30-79%) under the Pattern C
qualitative mapping in docs/frequency-evidence-guidelines.md. This series
reports no per-symptom percentage, so no higher band is sourced.
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Fever, altered mental status, headache, cough, respiratory difficulty, vomiting, and convulsions were the most common signs and symptoms"
explanation: |
Snippet supports the disease-phenotype association. Author wording "the
most common signs and symptoms" maps to FREQUENT (30-79%) under the
Pattern C qualitative mapping in docs/frequency-evidence-guidelines.md.
Hossain 2008 reports no per-symptom percentages, so no quantitative band
is available.
- name: Headache
category: Neurologic
frequency: FREQUENT
phenotype_term:
preferred_term: Headache
term:
id: HP:0002315
label: Headache
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The main presenting features were fever, headache, dizziness, and vomiting."
explanation: |
Snippet supports the disease-phenotype association. Author wording "main
presenting features" maps to FREQUENT (30-79%) under the Pattern C
qualitative mapping in docs/frequency-evidence-guidelines.md.
- name: Encephalitis
category: Neurologic
frequency: FREQUENT
phenotype_term:
preferred_term: Encephalitis
term:
id: HP:0002383
label: Infectious encephalitis
evidence:
- reference: PMID:39119137
reference_title: "A systematic review on Nipah virus: global molecular epidemiology and medical countermeasures development."
supports: SUPPORT
evidence_source: OTHER
snippet: "Nipah virus (NiV) is an emerging pathogen that causes encephalitis and a high mortality rate in infected subjects."
explanation: |
Snippet supports the disease-phenotype association. The review describes
encephalitis as what the virus causes, i.e. a predominant manifestation,
which maps to FREQUENT (30-79%) under the Pattern C qualitative mapping in
docs/frequency-evidence-guidelines.md. No cohort percentage is reported.
- reference: PMID:38399954
reference_title: "Nipah Virus: A Multidimensional Update."
supports: SUPPORT
evidence_source: OTHER
snippet: "Human infection manifests as a rapidly progressive encephalitis accounting for extremely high mortality rates."
explanation: |
Snippet supports the disease-phenotype association and the FREQUENT band
qualitatively ("human infection manifests as" a rapidly progressive
encephalitis, i.e. predominant). No quantitative frequency is reported, so
no higher band is claimed.
- name: Seizure
category: Neurologic
frequency: FREQUENT
phenotype_term:
preferred_term: Seizure
term:
id: HP:0001250
label: Seizure
evidence:
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Fever, altered mental status, headache, cough, respiratory difficulty, vomiting, and convulsions were the most common signs and symptoms"
explanation: |
Snippet supports the disease-phenotype association. Author wording "the
most common signs and symptoms" maps to FREQUENT (30-79%) under the
Pattern C qualitative mapping in docs/frequency-evidence-guidelines.md.
The previous OCCASIONAL (5-29%) band contradicted this wording; Hossain
2008 reports no per-symptom percentages.
- name: Reduced consciousness
category: Neurologic
frequency: FREQUENT
phenotype_term:
preferred_term: Reduced consciousness
term:
id: HP:0004372
label: Reduced consciousness
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Fifty-two patients (55 percent) had a reduced level of consciousness and prominent brain-stem dysfunction."
explanation: |
Pattern A/B quantitative support: 52/94 = 55%, which falls in the FREQUENT
band (30-79%) per docs/frequency-evidence-guidelines.md.
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Fever, altered mental status, headache, cough, respiratory difficulty, vomiting, and convulsions were the most common signs and symptoms"
explanation: |
Corroborates the disease-phenotype association in a second cohort. Author
wording "the most common signs and symptoms" is consistent with the
FREQUENT band already established quantitatively by Goh 2000 (55%).
- name: Myoclonus
category: Neurologic
phenotype_term:
preferred_term: Myoclonus
term:
id: HP:0001336
label: Myoclonus
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Distinctive clinical signs included segmental myoclonus, areflexia and hypotonia, hypertension, and tachycardia"
explanation: Segmental myoclonus was a distinctive clinical sign in the Malaysian case series, reflecting brain-stem involvement.
- name: Areflexia
category: Neurologic
phenotype_term:
preferred_term: Areflexia
term:
id: HP:0001284
label: Areflexia
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Distinctive clinical signs included segmental myoclonus, areflexia and hypotonia, hypertension, and tachycardia"
explanation: Areflexia was a distinctive clinical sign in the Malaysian case series, reflecting brain-stem and upper cervical cord involvement.
- name: Hypotonia
category: Neurologic
phenotype_term:
preferred_term: Hypotonia
term:
id: HP:0001252
label: Hypotonia
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Distinctive clinical signs included segmental myoclonus, areflexia and hypotonia, hypertension, and tachycardia"
explanation: Hypotonia was a distinctive clinical sign in the Malaysian case series, reflecting brain-stem and upper cervical cord involvement.
- name: Relapsing and late-onset encephalitis
category: Neurologic
frequency: VERY_RARE
description: >-
A distinctive feature of Nipah virus disease: encephalitis recurring after
recovery from, or after an initially mild, acute illness, and late-onset
encephalitis appearing months to years later. Kerala investigators attribute
it to reactivation of infection rather than a post-infectious immunological
demyelinating process, and report it as non-contagious.
phenotype_term:
preferred_term: Relapsing and late-onset Nipah encephalitis
term:
id: HP:0002383
label: Infectious encephalitis
temporality: RECURRENT
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Neurologic relapse occurred after initially mild disease in three patients."
explanation: |
Pattern B quantitative support: 3 of the 94 patients in the Malaysian
series = 3.2%, which falls in the VERY_RARE band (<5%).
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "It is also important to monitor Nipah survivors continuously because of the rare possibility of relapse and late-onset NiV encephalitis"
explanation: |
Independently corroborates the band: author wording "rare" maps to
VERY_RARE under the Pattern C qualitative mapping in
docs/frequency-evidence-guidelines.md, agreeing with the 3.2% figure above.
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "Late-onset reactivation encephalitis in Nipah appears to be non-contagious, but it is a concern because of the potential social stigma and significant morbidity/mortality risk associated with it."
explanation: Characterizes the late-onset form as reactivation, non-contagious, and carrying significant morbidity and mortality risk.
- name: Persistent neurologic deficits in survivors
category: Neurologic
frequency: OCCASIONAL
description: >-
A substantial minority of survivors are left with persistent neurological
sequelae rather than recovering fully.
phenotype_term:
preferred_term: Persistent neurologic deficits
term:
id: HP:0000707
label: Abnormality of the nervous system
temporality: CHRONIC
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Fifty patients (53 percent) recovered fully, and 14 (15 percent) had persistent neurologic deficits."
explanation: |
Pattern A quantitative support: 15% of the Malaysian series had persistent
neurologic deficits, which falls in the OCCASIONAL band (5-29%).
- name: Vomiting
category: Gastrointestinal
frequency: FREQUENT
phenotype_term:
preferred_term: Vomiting
term:
id: HP:0002013
label: Vomiting
evidence:
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The main presenting features were fever, headache, dizziness, and vomiting."
explanation: |
Snippet supports the disease-phenotype association. Author wording "main
presenting features" maps to FREQUENT (30-79%) under the Pattern C
qualitative mapping in docs/frequency-evidence-guidelines.md. The previous
OCCASIONAL (5-29%) band contradicted this wording.
- name: Cough
category: Respiratory
frequency: FREQUENT
phenotype_term:
preferred_term: Cough
term:
id: HP:0012735
label: Cough
evidence:
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Fever, altered mental status, headache, cough, respiratory difficulty, vomiting, and convulsions were the most common signs and symptoms"
explanation: |
Snippet supports the disease-phenotype association. Author wording "the
most common signs and symptoms" maps to FREQUENT (30-79%) under the
Pattern C qualitative mapping in docs/frequency-evidence-guidelines.md.
The previous OCCASIONAL (5-29%) band contradicted this wording.
- name: Respiratory distress
category: Respiratory
# frequency intentionally omitted: the only available evidence is
# outbreak-specific (ARDS "identified during the fourth outbreak") and does
# not support a whole-disease band. See docs/frequency-evidence-guidelines.md
# ("When in doubt, omit the frequency").
phenotype_term:
preferred_term: Respiratory distress
term:
id: HP:0002098
label: Respiratory distress
evidence:
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "clinical and radiographic features of acute respiratory distress syndrome of Nipah illness were identified during the fourth outbreak."
explanation: |
Snippet supports the disease-phenotype association only. The finding is
reported for one of four Bangladesh outbreaks, so it cannot support a
whole-disease frequency band; frequency is therefore omitted rather than
estimated.
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Fever, altered mental status, headache, cough, respiratory difficulty, vomiting, and convulsions were the most common signs and symptoms"
explanation: |
Corroborates the disease-phenotype association: respiratory difficulty is
listed among the most common signs and symptoms. The frequency band remains
omitted, because this entry keeps the quantitatively unsupported respiratory
arm conservative rather than inferring a whole-disease band.
- name: Acute respiratory distress syndrome
category: Respiratory
# frequency intentionally omitted: the supporting evidence is specific to one
# of the four Bangladesh outbreaks and does not support a whole-disease band.
phenotype_term:
preferred_term: Acute respiratory distress syndrome
term:
id: HP:0033677
label: Acute respiratory distress syndrome
evidence:
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "clinical and radiographic features of acute respiratory distress syndrome of Nipah illness were identified during the fourth outbreak."
explanation: |
Records ARDS specifically, by both clinical and radiographic criteria, in
the fourth Bangladesh outbreak. Curated as a distinct, more specific
phenotype alongside the broader Respiratory distress term (HP:0002098),
which remains supported by the wider "respiratory difficulty" evidence.
progression:
- phase: Incubation
incubation_days: '6-11'
notes: >-
Median incubation period of 9 days among Bangladesh patients with
well-defined exposure to another infected patient.
evidence:
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "the median incubation period was 9 days (range, 6-11 days)"
explanation: Directly reports the median and range of the incubation period in the Bangladesh cohort.
- phase: Acute illness
duration_days: '2-36'
notes: >-
Rapidly progressive illness affecting the central nervous and respiratory
systems; among Bangladesh patients who died, death occurred a median of
6 days after onset.
evidence:
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Among those who died, death occurred a median of 6 days (range, 2-36 days) after the onset of illness."
explanation: Reports the interval from symptom onset to death, defining the duration of the acute fatal course.
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Nipah virus infection produced rapidly progressive severe illness affecting the central nervous and respiratory systems."
explanation: Characterizes the acute phase as rapidly progressive and multisystem.
- phase: Outcome
notes: >-
Case fatality is high and differs between outbreak settings: 73% in the
Bangladesh outbreaks versus 32% in the Malaysian outbreak. Among Malaysian
survivors, just over half recovered fully and 15% had persistent
neurologic deficits.
evidence:
- reference: PMID:18444812
reference_title: "Clinical presentation of nipah virus infection in Bangladesh."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "We identified 92 patients with Nipah virus infection, 67 (73%) of whom died."
explanation: Reports a 73% case-fatality proportion across the four Bangladesh outbreaks.
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Thirty patients (32 percent) died after rapid deterioration in their condition."
explanation: Reports a 32% case-fatality proportion in the Malaysian outbreak, lower than the Bangladesh figure.
- reference: PMID:10781618
reference_title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Fifty patients (53 percent) recovered fully, and 14 (15 percent) had persistent neurologic deficits."
explanation: Quantifies full recovery and persistent neurologic sequelae among Malaysian survivors.
treatments:
- name: Supportive and intensive care
description: >-
Management is primarily supportive, including intensive care, management
of encephalitis, and respiratory support; there is no licensed antiviral
therapy or vaccine for human use.
treatment_term:
preferred_term: Supportive Care
term:
id: NCIT:C15747
label: Supportive Care
evidence:
- reference: PMID:38399954
reference_title: "Nipah Virus: A Multidimensional Update."
supports: SUPPORT
evidence_source: OTHER
snippet: "no therapeutic agents or vaccines have been approved for human use."
explanation: No approved therapeutics or vaccines exist, so care remains supportive.
- reference: PMID:39292378
reference_title: "Recent Advances of Nipah Virus Disease: Pathobiology to Treatment and Vaccine Advancement."
supports: SUPPORT
evidence_source: OTHER
snippet: "To date, no approved vaccines or treatments have been available."
explanation: The review confirms the absence of approved vaccines or treatments, leaving supportive care as standard.
- reference: PMID:38185127
reference_title: "Nipah virus disease: what can we do to improve patient care?"
supports: SUPPORT
evidence_source: OTHER
snippet: "Although candidate vaccines for Nipah virus disease exist, developing new therapeutics has been underinvested."
explanation: Explains why supportive care remains the mainstay - therapeutic development has been underinvested despite candidate vaccines existing.
- reference: PMID:38185127
reference_title: "Nipah virus disease: what can we do to improve patient care?"
supports: SUPPORT
evidence_source: OTHER
snippet: "the disease it causes still carries high mortality, unchanged since the first reported outbreaks"
explanation: Records that mortality has not improved since the first outbreaks, underscoring the limits of currently available supportive management.
- reference: PMID:39119137
reference_title: "A systematic review on Nipah virus: global molecular epidemiology and medical countermeasures development."
supports: SUPPORT
evidence_source: OTHER
snippet: "only two vaccines have progressed to clinical trials"
explanation: Systematic-review anchor for the state of countermeasure development, contextualizing the clinical_trials section.
- name: m102.4 monoclonal antibody
therapeutic_modality: MONOCLONAL_ANTIBODY
description: >-
m102.4 is a cross-reactive neutralizing human monoclonal antibody that
targets the henipavirus attachment G glycoprotein and blocks its engagement
of the host ephrin receptors, preventing viral entry. It is recommended as
the specific management option to prevent severe disease in high-risk
individuals, but global availability is limited, the disease progresses too
rapidly for it to be given in many cases, and its activity may be restricted
to the clade against which it was raised. No phase II/III efficacy trial has
yet been reported.
target_mechanisms:
- target: Ephrin-B2/B3 receptor-mediated cell entry
treatment_effect: INHIBITS
description: >-
m102.4 binds the viral attachment G glycoprotein and blocks its engagement
of the host ephrin receptors, so it acts directly on the receptor-mediated
entry step rather than on a downstream consequence.
evidence:
- reference: PMID:24130486
reference_title: "Crystal structure of the Hendra virus attachment G glycoprotein bound to a potent cross-reactive neutralizing human monoclonal antibody."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "One cross-reactive and receptor-blocking hmAb (m102.4) was recently demonstrated to be an effective post-exposure therapy in two animal models of NiV and HeV infection"
explanation: Describes m102.4 explicitly as receptor-blocking, which is what licenses the INHIBITS edge onto the receptor-mediated entry node.
- reference: PMID:19888339
reference_title: "A neutralizing human monoclonal antibody protects against lethal disease in a new ferret model of acute nipah virus infection."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: "a cross-reactive neutralizing human monoclonal antibody, m102.4, targeting the henipavirus G glycoprotein was evaluated in vivo as a potential therapeutic agent"
explanation: Identifies the henipavirus G attachment glycoprotein as the molecular target of m102.4.
treatment_term:
preferred_term: antiviral agent therapy
term:
id: NCIT:C16119
label: Antiviral Therapy
therapeutic_agent:
- preferred_term: m102.4
term:
id: NCIT:C20401
label: Monoclonal Antibody
evidence:
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "monoclonal antibodies (mAb) targeting the virus are recommended as the specific management option to prevent severe disease manifestations in high-risk individuals"
explanation: Establishes m102.4 as the recommended specific management option for high-risk individuals.
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "the limited global availability of mAb and the rapid progression of the disease have interfered with its use in outbreaks"
explanation: |
Qualifies the recommendation: availability and disease tempo have limited
actual use in outbreaks, so this is recorded as PARTIAL support rather than
demonstrated clinical efficacy.
- reference: PMID:19888339
reference_title: "A neutralizing human monoclonal antibody protects against lethal disease in a new ferret model of acute nipah virus infection."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: "All ferrets that received m102.4 ten hours following a high dose oral-nasal Nipah virus challenge were protected from disease while all controls died."
explanation: |
Post-exposure protection in the ferret model. MODEL_ORGANISM - this is the
strongest efficacy evidence available for m102.4 and it is preclinical, not
a human outcome.
- name: Remdesivir
therapeutic_modality: SMALL_MOLECULE
description: >-
Remdesivir is a nucleotide analogue prodrug used on compassionate grounds in
the 2023 Kerala outbreak for early administration before the onset of
encephalitis, and as post-exposure prophylaxis in the highest-risk contacts.
Efficacy in humans is unproven; supporting efficacy data are in vitro and in
African green monkey challenge studies.
treatment_term:
preferred_term: antiviral agent therapy
term:
id: NCIT:C16119
label: Antiviral Therapy
therapeutic_agent:
- preferred_term: remdesivir
term:
id: CHEBI:145994
label: remdesivir
evidence:
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
directness: INDIRECT
evidence_source: OTHER
snippet: "During the 2023 outbreak, remdesivir was recommended on compassionate grounds for early use before the onset of encephalitis"
explanation: |
Documents the compassionate-use recommendation and the timing rationale.
INDIRECT because the quote reports what was recommended rather than what the
drug did, so it reaches this treatment entry through the recommendation
rather than through an outcome. That the setting was uncontrolled is also
true, but that is a strength caveat rather than the reason for this grading.
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: "In-vitro studies, as well as clade 1 challenge studies in African green monkeys, have shown that remdesivir is effective for the treatment as well as prophylaxis against Nipah virus disease"
explanation: |
Preclinical efficacy for both treatment and prophylaxis. Classified
MODEL_ORGANISM because the efficacy claim rests on nonhuman primate
challenge studies, not human outcomes.
- name: Ribavirin
description: >-
Ribavirin has been used empirically during outbreaks with uncertain
clinical benefit against Nipah virus.
therapeutic_modality: SMALL_MOLECULE
treatment_term:
preferred_term: antiviral agent therapy
term:
id: NCIT:C16119
label: Antiviral Therapy
therapeutic_agent:
- preferred_term: ribavirin
term:
id: CHEBI:63580
label: ribavirin
evidence:
- reference: PMID:39633840
reference_title: "Risk Evaluation and Mitigation Strategies for Potential Outbreaks of Nipah Virus Infection: Evidenced by the Recent Incidences in Southeast Asian Countries."
supports: SUPPORT
evidence_source: OTHER
snippet: "Synthetic medicines, like Ribavirin, and favipiravir showed promising results in NiV-infected patients."
explanation: Ribavirin has shown promising but non-definitive results in Nipah-infected patients.
diagnosis:
- name: Nucleic acid testing for Nipah virus RNA
description: >-
Diagnosis rests on molecular detection of Nipah virus RNA. In the Kerala
protocol, epidemiologically unlinked encephalitis cases are first screened
with a PCR-based panel; throat swab, blood, urine and CSF are then screened
for NiV RNA at a BSL 2/3 facility or by a point-of-care nucleic acid test
(Truenat), with confirmation at a BSL 4 facility.
diagnosis_term:
preferred_term: nucleic acid amplification test
term:
id: NCIT:C20055
label: Nucleic Acid Amplification Test
results: Detection of Nipah virus RNA in throat swab, blood, urine, or CSF.
evidence:
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "the samples (throat swab, blood, urine and CSF) will be screened for NiV RNA at a biosafety level (BSL) 2/3 facility or a point of care nucleic acid test (Truenat)"
explanation: Specifies the sample types and the nucleic acid testing pathway used for diagnosis.
- name: Serological testing
description: >-
Serology is not used to diagnose acute symptomatic infection because of its
low sensitivity in the early phase of illness; its role is confined to
serosurveys.
diagnosis_term:
preferred_term: serologic test
term:
id: NCIT:C217458
label: Diagnostic Serology Testing
results: Not recommended for acute diagnosis; used for serosurveillance.
evidence:
- reference: PMID:39700307
reference_title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
supports: SUPPORT
evidence_source: OTHER
snippet: "We do not use serological tests to diagnose Nipah in an active symptomatic suspect because of its low sensitivity in early phase of the infection, but they are used for serosurvey"
explanation: States that serology is unsuitable for acute diagnosis owing to low early-phase sensitivity, and is reserved for serosurvey.
animal_models:
- name: Nonhuman primate henipavirus challenge model
species: African green monkey
publication: PMID:37896758
description: >-
Nonhuman primates most closely reproduce human henipavirus disease and are
the model in which remdesivir treatment and prophylaxis efficacy against
clade I Nipah virus was demonstrated.
modeled_mechanisms:
- target: Pulmonary involvement and respiratory tract infection
relationship: RECAPITULATES
fidelity: HIGH
description: >-
Nonhuman primate challenge reproduces the combined severe respiratory and
encephalitic disease seen in human outbreaks.
limitations: >-
Challenge is by controlled experimental inoculation at a defined dose and
route, unlike natural human exposure to bat secretions, contaminated date
palm sap, or an infected patient.
evidence:
- reference: PMID:37896758
reference_title: "Animal Models for Henipavirus Research."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: "Among these, NHPs have demonstrated the closest resemblance to human HNV disease, although other animal models replicate some key disease features."
explanation: Establishes nonhuman primates as the animal model most faithful to human henipavirus disease.
- target: Central nervous system invasion
relationship: RECAPITULATES
fidelity: HIGH
description: >-
Henipavirus challenge in animal models reproduces the encephalitic arm of
human disease, not only the respiratory arm.
limitations: >-
Encephalitis is scored over the short experimental course, so the model
does not capture the relapsing and late-onset human encephalitis that
appears months to years after acute illness.
evidence:
- reference: PMID:37896758
reference_title: "Animal Models for Henipavirus Research."
supports: SUPPORT
evidence_source: OTHER
snippet: "Outbreaks of HeV and NiV have led to severe respiratory disease and encephalitis in humans and animals characterized by a high mortality rate."
explanation: >-
Establishes that encephalitis, alongside respiratory disease, occurs in
animals as well as humans and so is within the models' scope. Tagged
OTHER rather than MODEL_ORGANISM because the sentence reports NATURAL
outbreak disease in humans and animals, not in vivo experimental data -
it is background in a review about animal models, not a result from one.
evidence:
- reference: PMID:37896758
reference_title: "Animal Models for Henipavirus Research."
supports: SUPPORT
evidence_source: OTHER
snippet: "Outbreaks of HeV and NiV have led to severe respiratory disease and encephalitis in humans and animals characterized by a high mortality rate."
explanation: >-
The disease features the model is required to reproduce - severe
respiratory disease plus encephalitis with high mortality. Tagged OTHER for
the same reason as the readout item above: this is the review's background
description of natural outbreaks, not experimental animal data.
- reference: PMID:37896758
reference_title: "Animal Models for Henipavirus Research."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: "no approved medical countermeasures for human use currently exist against HeV or NiV"
explanation: Motivates continued reliance on animal models, since no approved human countermeasures exist.
clinical_trials:
- name: NCT04199169
phase: PHASE_I
status: COMPLETED
description: >-
First-in-human Phase 1 trial of the HeV-sG-V (HenipaVax) Hendra virus
soluble glycoprotein subunit vaccine in healthy adults, testing three
ascending dose levels and different dosing regimens. Enrolment 192.
evidence:
- reference: clinicaltrials:NCT04199169
reference_title: "A Phase 1 Randomized, Placebo-controlled, Observer-blind Trial to Assess the Safety and Immunogenicity of a Nipah Vaccine, HeV-sG-V (Hendra Virus Soluble Glycoprotein Vaccine), in Healthy Adults"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "A first-in-human, phase 1 trial is to be conducted in a healthy adult population in the US to assess the safety and immunogenicity of three ascending Nipah vaccine (HeV-sG-V; Hendra virus soluble glycoprotein vaccine) dosages."
explanation: Registry record establishing the trial's phase, population, and the HeV-sG-V vaccine under test.
- name: NCT05178901
phase: PHASE_I
status: COMPLETED
description: >-
Phase 1 dose-response and booster trial of PHV02, a recombinant vesicular
stomatitis virus-vectored Nipah vaccine candidate, in healthy adults.
Enrolment 60.
evidence:
- reference: clinicaltrials:NCT05178901
reference_title: "A Phase 1 Randomized, Single Center, Double-Blind, Placebo-Controlled, Dose-Response and Open-Label or Single Blind Booster Study to Evaluate the Safety and Immunogenicity of RVSV-Nipah Virus Vaccine Candidate PHV02 in Healthy Adult Subjects"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "A Phase 1 Study to Evaluate the Safety and Immunogenicity of rVSV-Nipah Virus Vaccine Candidate PHV02 in Healthy Adult Subjects"
explanation: Registry summary establishing PHV02 as an rVSV-vectored Nipah vaccine candidate in Phase 1.
- name: NCT06221813
phase: PHASE_I
status: COMPLETED
description: >-
Phase 1b prime-boost trial of three dose levels of PHV02
(rVSV-dG-EBOV GP-NiVG) given as a two-dose regimen one month apart in
healthy adults, with Nipah-specific IgG ELISA and neutralizing antibody
readouts. Enrolment 120.
evidence:
- reference: clinicaltrials:NCT06221813
reference_title: "A Phase 1b Randomized, Observer-Blind, Placebo-Controlled Study to Evaluate the Safety and Immunogenicity of a Prime-Boost Regimen of Three Dose Levels of PHV02, a Nipah Virus Vaccine Candidate (rVSV-ΔG-EBOV GP-NiVG) in Healthy Adults"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The goal of this clinical trial is to test the safety and immunogenicity of PHV02 live, attenuated recombinant vesicular stomatitis virus vaccine expressing the Nipah Virus glycoprotein in healthy adult subjects."
explanation: Registry record establishing the prime-boost design and the vaccine construct under test.
- name: NCT05398796
phase: PHASE_I
status: COMPLETED
description: >-
VRC 322/DMID 21-0016, a Phase 1 dose-escalation, open-label trial of the
mRNA-1215 Nipah virus mRNA vaccine in healthy adults aged 18-60, given as
two doses one month apart. Enrolment 40.
evidence:
- reference: clinicaltrials:NCT05398796
reference_title: "VRC 322/DMID 21-0016: A Phase I, Dose Escalation, Open-Label Clinical Trial to Evaluate Safety, Tolerability and Immunogenicity of a Nipah Virus (NiV) mRNA Vaccine, mRNA-1215, in Healthy Adults"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "To test the safety of an experimental vaccine (mRNA-1215) for NiV."
explanation: Registry record establishing the trial objective and the mRNA-1215 vaccine candidate.
- reference: clinicaltrials:NCT05398796
reference_title: "VRC 322/DMID 21-0016: A Phase I, Dose Escalation, Open-Label Clinical Trial to Evaluate Safety, Tolerability and Immunogenicity of a Nipah Virus (NiV) mRNA Vaccine, mRNA-1215, in Healthy Adults"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "There are no drugs or vaccines to treat or prevent NiV infection."
explanation: The registry record states the unmet need motivating the trial, consistent with this entry's treatments section.
- name: NCT01811784
status: UNKNOWN
description: >-
Community intervention trial in Bangladesh evaluating behaviour-change
interventions to reduce Nipah spillover through raw date palm sap - the
prevention counterpart to the vaccine trials, targeting the transmission
route rather than the host response.
notes: >-
ClinicalTrials.gov records this study as Phase 1/Phase 2, which has no
single corresponding value in ClinicalTrialPhaseEnum; `phase` is therefore
omitted rather than misrepresented. Registry status is Unknown.
evidence:
- reference: clinicaltrials:NCT01811784
reference_title: "A Community Intervention Trial Utilizing Behavior Change to Reduce the Risk of Nipah Spillover Through Date Palm Sap in Bangladesh"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The purpose of this study is to design, implement and evaluate behavior change interventions to prevent human consumption of NiV contaminated sap through reducing raw sap consumption from unprotected trees in a district of the NiV affected regions in Bangladesh."
explanation: Registry record establishing the prevention objective and the date palm sap transmission route targeted.
references:
- reference: PMID:38399954
title: "Nipah Virus: A Multidimensional Update."
found_in:
- Nipah_Virus_Disease-deep-research-falcon.md
- reference: PMID:38185127
title: "Nipah virus disease: what can we do to improve patient care?"
found_in:
- Nipah_Virus_Disease-deep-research-falcon.md
- reference: PMID:39119137
title: "A systematic review on Nipah virus: global molecular epidemiology and medical countermeasures development."
found_in:
- Nipah_Virus_Disease-deep-research-falcon.md
- reference: PMID:39700307
title: "Pandemic potential of the Nipah virus and public health strategies adopted during outbreaks: Lessons from Kerala, India."
found_in:
- Nipah_Virus_Disease-deep-research-falcon.md
- reference: PMID:39292378
title: "Recent Advances of Nipah Virus Disease: Pathobiology to Treatment and Vaccine Advancement."
found_in:
- Nipah_Virus_Disease-deep-research-falcon.md
- reference: PMID:39633840
title: "Risk Evaluation and Mitigation Strategies for Potential Outbreaks of Nipah Virus Infection: Evidenced by the Recent Incidences in Southeast Asian Countries."
found_in:
- Nipah_Virus_Disease-deep-research-falcon.md
- reference: PMID:37896758
title: "Animal Models for Henipavirus Research."
found_in:
- Nipah_Virus_Disease-deep-research-falcon.md
- reference: PMID:10781618
title: "Clinical features of Nipah virus encephalitis among pig farmers in Malaysia."
- reference: PMID:18444812
title: "Clinical presentation of nipah virus infection in Bangladesh."
- reference: PMID:12466131
title: "Nipah virus infection: pathology and pathogenesis of an emerging paramyxoviral zoonosis."
- reference: PMID:15279700
title: "Host evasion by emerging paramyxoviruses: Hendra virus and Nipah virus v proteins inhibit interferon signaling."
- reference: PMID:36851768
title: "Nipah Virus Impairs Autocrine IFN Signaling by Sequestering STAT1 and STAT2 into Inclusion Bodies."
- reference: PMID:24130486
title: "Crystal structure of the Hendra virus attachment G glycoprotein bound to a potent cross-reactive neutralizing human monoclonal antibody."
- reference: PMID:19888339
title: "A neutralizing human monoclonal antibody protects against lethal disease in a new ferret model of acute nipah virus infection."
- reference: clinicaltrials:NCT04199169
title: >-
A Phase 1 Randomized, Placebo-controlled, Observer-blind Trial to Assess the
Safety and Immunogenicity of a Nipah Vaccine, HeV-sG-V (Hendra Virus Soluble
Glycoprotein Vaccine), in Healthy Adults
- reference: clinicaltrials:NCT05178901
title: >-
A Phase 1 Randomized, Single Center, Double-Blind, Placebo-Controlled,
Dose-Response and Open-Label or Single Blind Booster Study to Evaluate the
Safety and Immunogenicity of RVSV-Nipah Virus Vaccine Candidate PHV02 in
Healthy Adult Subjects
- reference: clinicaltrials:NCT06221813
title: >-
A Phase 1b Randomized, Observer-Blind, Placebo-Controlled Study to Evaluate
the Safety and Immunogenicity of a Prime-Boost Regimen of Three Dose Levels
of PHV02, a Nipah Virus Vaccine Candidate (rVSV-ΔG-EBOV GP-NiVG) in Healthy
Adults
- reference: clinicaltrials:NCT05398796
title: >-
VRC 322/DMID 21-0016: A Phase I, Dose Escalation, Open-Label Clinical Trial
to Evaluate Safety, Tolerability and Immunogenicity of a Nipah Virus (NiV)
mRNA Vaccine, mRNA-1215, in Healthy Adults
- reference: clinicaltrials:NCT01811784
title: >-
A Community Intervention Trial Utilizing Behavior Change to Reduce the Risk
of Nipah Spillover Through Date Palm Sap in Bangladesh
Nipah virus disease (NVD) is an acute, bat-borne zoonotic infection caused by Nipah virus (NiV), an enveloped negative-sense single-stranded RNA henipavirus. Disease ranges from asymptomatic infection or influenza-like illness to rapidly progressive pneumonia, acute respiratory distress syndrome (ARDS), encephalitis, seizures, coma, and death. The major biological lesion is systemic infection of ephrin-B2/B3-expressing endothelium and neural cells, producing vasculitis, thrombosis, blood–brain-barrier injury, and neuronal infection. Pteropus fruit bats are the reservoir; transmission occurs through contaminated food, infected livestock, and close contact with infected people. Outbreak-specific case-fatality ratios (CFRs) range from approximately 25% to 100%, and an aggregated 2024 review reported 424 deaths among 729 recognized cases (58%). No human vaccine or disease-specific treatment is licensed; supportive intensive care remains standard, while m102.4 and remdesivir are the leading candidates for clinical efficacy trials. (hassan2024nipahvirusdisease pages 11-14, hassan2024nipahvirusdisease pages 9-11, fauscotino2024nipahvirusa pages 3-5, fauscotino2024nipahvirusa pages 7-9, chan2024nipahvirustherapeutics pages 12-14)
The following compact table is intended for direct knowledge-base curation.
| Domain | High-confidence annotation/finding | Suggested ontology identifiers/terms | Evidence type and caveat |
|---|---|---|---|
| Disease identifier/classification | Nipah virus disease is a zoonotic henipavirus infection causing severe acute encephalitis and/or respiratory disease. Confident retrieved identifier: MeSH D045464 Henipavirus Infections; specific MONDO ID not confidently established from retrieved evidence, so mark unknown/not confirmed here. | MeSH: D045464 Henipavirus Infections; Disease label: Nipah virus infection / disease; MONDO: unknown in retrieved sources | Clinical trial registry-derived MeSH plus recent reviews; MeSH term in trials is broader than Nipah-specific disease, so disease-level normalization should be reviewed separately (NCT05178901 chunk 1, NCT04199169 chunk 1, NCT05398796 chunk 1, fauscotino2024nipahvirusa pages 3-5) |
| Pathogen | Cause is Nipah virus (NiV), a negative-sense ssRNA henipavirus in family Paramyxoviridae; major clades/strains discussed are Malaysia and Bangladesh/India lineages. | Pathogen label: Nipah virus; Taxon term label acceptable if needed; CHEBI: not applicable | Review/pathobiology evidence; strain nomenclature and clade proposals are evolving, especially for India lineage (tan2024asystematicreview pages 1-2, fauscotino2024nipahvirusa pages 3-5, anish2024pandemicpotentialof pages 2-3) |
| Reservoir and spillover ecology | Natural reservoir is Pteropus fruit bats; spillover occurs directly via bat-contaminated food (notably raw date palm sap) and indirectly via amplifying hosts such as pigs; horses also noted in some outbreaks/reviews. | Host/reservoir terms: Pteropus bats, swine, horse; Exposure term: raw date palm sap consumption | Strong epidemiologic consensus; exact reservoir species differs by geography, and not all spillover events involve an intermediate host (tan2024asystematicreview pages 1-2, anish2024pandemicpotentialof pages 2-3, NCT01811784 chunk 1, pigeaud2023animalmodelsfor pages 1-2) |
| Transmission/risk factors | Major routes: pig-to-human in Malaysia/Singapore, contaminated date palm sap in Bangladesh, and person-to-person spread in Bangladesh/India/Kerala; close patient contact is a major risk factor. | Exposure terms: zoonotic transmission, person-to-person transmission, foodborne exposure, occupational exposure | Human outbreak investigations and reviews; route contributions vary strongly by outbreak setting (rahman2024riskevaluationand pages 3-4, tan2024asystematicreview pages 1-2, hassan2024nipahvirusdisease pages 11-14, hassan2024nipahvirusdisease pages 9-11) |
| Core phenotype set | Dominant phenotype spectrum: fever, headache, myalgia, cough/shortness of breath, acute encephalitis, confusion, seizures, coma; respiratory disease can be prominent, especially Bangladesh/India clade. | HPO suggestions: Fever, Headache, Myalgia, Cough, Dyspnea, Encephalitis, Confusion, Seizure, Coma | Human clinical reviews and outbreaks; exact frequency by symptom is incompletely standardized across cohorts (hassan2024nipahvirusdisease pages 11-14, chan2024nipahvirustherapeutics pages 1-4, saha2024recentadvancesof pages 6-7) |
| Long-term sequelae / QoL | Survivors may develop persistent neurologic disability, including paralysis and oculomotor/neurologic deficits; relapsing or late encephalitis is recognized. | HPO suggestions: Paralysis, Abnormality of eye movement, Neurocognitive impairment | Based on follow-up literature summarized in reviews; precise prevalence and QoL instrument data are limited (chan2024nipahvirustherapeutics pages 1-4, saha2024recentadvancesof pages 6-7, chan2024nipahvirustherapeutics pages 12-14) |
| Host genes / molecular host factors | EFNB2 and EFNB3 are key host entry receptors for NiV G glycoprotein. These are host susceptibility/entry factors, not inherited monogenic causes of disease. | Gene symbols: EFNB2, EFNB3; Mechanism labels: viral receptor activity, virus entry into host cell | Strong mechanistic evidence from virology studies and reviews; no retrieved evidence supports inherited pathogenic variants causing Nipah disease susceptibility (fauscotino2024nipahvirusa pages 3-5, brown2023immunopathogenesisofnipah pages 5-7, anish2024pandemicpotentialof pages 2-3) |
| Viral genes and immune evasion | Viral genome encodes N, P, M, F, G, L and accessory V/W/C proteins; G mediates receptor binding, F mediates fusion, and V/W/P antagonize interferon pathways. | GO suggestions: virus entry into host cell, membrane fusion, negative regulation of type I interferon production, suppression by virus of host type I interferon-mediated signaling pathway | Mostly mechanistic review synthesis from primary experimental work; gene-by-gene effects are largely derived from in vitro/animal systems rather than direct human intervention studies (fauscotino2024nipahvirusa pages 3-5, brown2023immunopathogenesisofnipah pages 5-7) |
| Pathophysiology | Upstream-to-downstream chain: respiratory entry → local replication → viremia/leukocyte-associated spread → endothelial and neuronal tropism → vasculitis, thrombosis, syncytia, BBB disruption, encephalitis, pulmonary edema/ARDS. | GO suggestions: viral process, cell-cell fusion, vasculitis, inflammatory response, blood-brain barrier disruption; CL suggestions: endothelial cell, neuron, monocyte, natural killer cell, T cell | Combined human pathology, in vitro, and animal-model evidence; BBB and leukocyte “Trojan horse” mechanisms remain incompletely resolved (fauscotino2024nipahvirusa pages 3-5, saha2024recentadvancesof pages 6-7, anish2024pandemicpotentialof pages 2-3) |
| Affected anatomy and cells | Primary organs/systems: brain/CNS, lung/respiratory tract, vascular endothelium; secondary involvement includes kidney, liver, and heart in severe systemic disease. Key target cells include neurons, vascular endothelial cells, and probably leukocyte populations during dissemination. | UBERON suggestions: brain, lung, blood vessel endothelium, kidney, liver, heart; CL suggestions: neuron, endothelial cell, smooth muscle cell, monocyte, NK cell, CD8-positive T cell | Human pathology and animal data agree on CNS/lung/endothelium; cell-type ranking outside endothelium/neurons is less certain in humans (fauscotino2024nipahvirusa pages 3-5, saha2024recentadvancesof pages 6-7, anish2024pandemicpotentialof pages 2-3) |
| Diagnostics | Outbreak diagnosis relies on laboratory confirmation plus clinical/epidemiologic context; recent reviews emphasize need for rapid diagnosis and strengthened diagnostic capacity. Experimental immunoassays using recombinant ephrin-B2 capture have been described. | Diagnostic labels: RT-PCR, serology/ELISA, antigen detection, contact/exposure history | Retrieved evidence set gives only partial test-detail coverage; exact specimen hierarchy and reference-standard algorithms are not fully captured here, so formal WHO/CDC lab guidance should be added in production (rahman2024riskevaluationand pages 3-4, fauscotino2024nipahvirusa pages 3-5) |
| Prognosis / statistics | High mortality overall. Recent review summarized 729 cases, 424 deaths (58%) overall; CFRs are typically <40% in Malaysia and often >70% in Bangladesh/India/Philippines. 2023 Bangladesh outbreak reported 14 cases, 10 deaths (71%) in one review. | Prognostic labels: case fatality rate, neurologic sequelae, rapid progression | Aggregated review data; outbreak-specific CFRs depend on strain, detection intensity, and care access, so statistics should be stored with location/year provenance (tan2024asystematicreview pages 1-2, hassan2024nipahvirusdisease pages 11-14, hassan2024nipahvirusdisease pages 9-11) |
| Treatment status and care | No licensed therapy or vaccine for humans. Current care is mainly supportive/ICU care; evidence-based priorities for trials are m102.4 and remdesivir for prophylaxis/early treatment. Ribavirin has observational human use but uncertain efficacy and tolerability concerns. | MAXO suggestions: supportive care, intensive care management, mechanical ventilation/respiratory support, antiviral treatment, monoclonal antibody therapy | Strong expert consensus from 2024 reviews; efficacy evidence for most agents is preclinical or observational, not definitive randomized clinical efficacy (anish2024pandemicpotentialof pages 9-10, chan2024nipahvirustherapeutics pages 4-6, fauscotino2024nipahvirusa pages 7-9, chan2024nipahvirustherapeutics pages 12-14, chan2024nipahvirustherapeutics pages 1-4) |
| Prevention / public health | Key preventive measures: avoid raw date palm sap, use tree skirts/barriers to prevent bat contamination, infection-control measures for human-to-human spread, surveillance/contact tracing, and community education. | MAXO suggestions: exposure avoidance counseling, infection prevention and control, contact tracing, behavior change intervention | Includes interventional prevention trial context; effectiveness depends on local adherence and outbreak ecology (NCT01811784 chunk 1, NCT01811784 chunk 2, anish2024pandemicpotentialof pages 1-2) |
| Vaccine clinical development | Human vaccine trials through 2024 include HeV-sG-V / HenipaVax Phase 1 (NCT04199169, completed, n=192), mRNA-1215 Phase 1 (NCT05398796, completed, n=40), PHV02 Phase 1 (NCT05178901, completed, n=60), and PHV02 prime-boost Phase 1b (NCT06221813, completed, n=120). | Intervention labels: subunit vaccine, mRNA vaccine, rVSV-vectored vaccine | ClinicalTrials.gov records are high-confidence for status/design/enrollment; efficacy against clinical disease is not established from these early-phase studies (NCT05178901 chunk 1, NCT04199169 chunk 1, NCT05398796 chunk 1, NCT06221813 chunk 1) |
| Animal models / comparative biology | Reservoir biology centers on Pteropus bats; major models include Syrian hamster, ferret, guinea pig, swine, cat, and nonhuman primates. African green monkeys most closely reproduce human disease; hamsters/ferrets are practical for countermeasure triage but incompletely capture all human features. | Model labels: Pteropus bat, Syrian hamster, ferret, guinea pig, pig, cat, African green monkey, marmoset, cynomolgus monkey | Dedicated 2023 model review plus 2024 summaries; route/phenotype details vary by strain and inoculation method, and some companion-animal models are used sparingly for ethical/practical reasons (anish2024pandemicpotentialof pages 2-3, pigeaud2023animalmodelsfor pages 34-35, pigeaud2023animalmodelsfor pages 35-36, pigeaud2023animalmodelsfor pages 24-26, pigeaud2023animalmodelsfor pages 2-4) |
Table: This table summarizes high-confidence knowledge-base annotations for Nipah virus disease across identifiers, pathogenesis, clinical features, prognosis, prevention, treatment status, vaccine trials, and animal models. It is designed as a compact curation aid and notes where ontology IDs or evidence remain uncertain.
NVD is a zoonotic henipavirus infection characterized principally by acute encephalitis and/or severe respiratory disease. Synonyms include Nipah virus infection, Nipah encephalitis, NiV infection, and, less specifically, henipavirus infection. It was first recognized during the 1998–1999 Malaysia–Singapore outbreak; subsequent recurrent outbreaks have occurred mainly in Bangladesh and India, with an equine-associated outbreak in the Philippines. (tan2024asystematicreview pages 1-2, hassan2024nipahvirusdisease pages 11-14)
This report synthesizes aggregated disease-level resources, outbreak cohorts, clinical-trial registries, and experimental literature. It is not derived from an individual EHR.
The sole necessary causal agent is NiV. Important lineages include NiV-Malaysia and the Bangladesh/India clade. The latter is associated epidemiologically with severe pulmonary involvement, person-to-person transmission, and CFRs often exceeding 70%, whereas Malaysian outbreaks had CFRs below 40%; ascertainment, route, health-system capacity, and viral biology all probably contribute. (tan2024asystematicreview pages 1-2, anish2024pandemicpotentialof pages 2-3)
One review estimated that 51% of recognized Bangladeshi cases followed close contact with another patient. A reported effective reproduction number around 1.46–1.80 should be interpreted cautiously because most transmission chains terminate and superspreading creates marked heterogeneity. (rahman2024riskevaluationand pages 3-4, anish2024pandemicpotentialof pages 1-2, hassan2024nipahvirusdisease pages 9-11, pigeaud2023animalmodelsfor pages 1-2)
No validated human germline causal variant, susceptibility locus, protective allele, modifier gene, Mendelian inheritance pattern, or clinically actionable pharmacogenomic association is established. EFNB2 and EFNB3 are host entry factors, not inherited causes. The dominant gene–environment relationship is functional: exposure introduces virus to tissues expressing these receptors. Environmental protection consists of avoiding raw sap, blocking bat access to collection sites, reducing infected-animal contact, and infection-control precautions. A 7,782-participant community protocol evaluated “do not drink raw sap” messaging and sap collection from trees protected by bamboo skirts or banas. (NCT01811784 chunk 1, NCT01811784 chunk 2, fauscotino2024nipahvirusa pages 3-5)
Disease affects all age groups and usually begins acutely after a 4–14-day incubation period, although longer incubations have occasionally been reported. Early fever, headache, myalgia, vomiting, cough, and dyspnea can progress over hours to days to altered consciousness, seizures, encephalitis, and coma; coma may develop within 24–48 hours after major neurological deterioration. Severity and respiratory prominence vary by lineage and outbreak. (chan2024nipahvirustherapeutics pages 1-4, anish2024pandemicpotentialof pages 2-3)
| Phenotype | Type/course | Suggested HPO annotation |
|---|---|---|
| Fever, headache, myalgia | Early symptoms; common but exact pooled frequencies unavailable | Fever; Headache; Myalgia |
| Cough, dyspnea, atypical pneumonia | Respiratory symptom/sign; variable to severe | Cough; Dyspnea; Pneumonia |
| Pulmonary edema/ARDS | Severe progressive complication | Pulmonary edema; Acute respiratory distress |
| Confusion/somnolence | Neurological/behavioral change; progressive | Confusion; Somnolence |
| Acute encephalitis | Cardinal severe manifestation | Encephalitis |
| Seizures and coma | Advanced disease; poor functional state | Seizure; Coma |
| Paralysis, cognitive/sensory/motor or oculomotor deficits | Long-term survivor morbidity | Paralysis; Neurocognitive impairment; Abnormality of eye movement |
| Relapsing/late-onset encephalitis | Episodic delayed complication, sometimes >1 year later | Recurrent encephalitis/encephalopathy—curator review recommended |
Survivors may have substantial dependence, impaired mobility, cognition, communication, or employment. However, recent disease-specific EQ-5D, SF-36, or PROMIS estimates were not found; quality-of-life effects are chiefly inferred from neurological disability studies. (chan2024nipahvirustherapeutics pages 1-4, chan2024nipahvirustherapeutics pages 12-14, saha2024recentadvancesof pages 6-7)
NVD is not a genetic disorder. Therefore causal human genes, ACMG-classified pathogenic variants, allele frequencies, chromosomal abnormalities, anticipation, mosaicism, founder effects, and carrier frequency are not applicable.
The approximately 18.2-kb viral genome encodes structural proteins N, P, M, F, G, and L; RNA editing/alternative expression from the P locus produces V, W, and C. G is the attachment protein, F mediates membrane fusion, M coordinates assembly/egress through phosphatidylserine and PI(4,5)P2 interactions, and L is the RNA-dependent RNA polymerase. V/W/P antagonize interferon production or STAT-dependent signaling; C contributes to budding. (fauscotino2024nipahvirusa pages 3-5, brown2023immunopathogenesisofnipah pages 5-7)
Relevant human genes are EFNB2 and EFNB3, whose products act as viral receptors. Deep mutational scanning published in 2023 engineered an EFNB2 decoy that retained henipavirus-G binding while reducing Eph-receptor binding, illustrating a potential therapeutic rather than inherited-disease mechanism.
No reproducible human disease-associated DNA methylation, histone modification, structural variant, or clinically actionable epigenetic signature was established in the evidence reviewed.
The primary non-genetic determinants are ecological and behavioral: bat habitat overlap, date-palm-sap harvesting, livestock intensification, occupational swine exposure, unsafe caregiving, inadequate personal protective equipment, and delayed recognition in resource-constrained settings. Smoking, alcohol, exercise, and ordinary diet have no established disease-specific causal role apart from consumption of contaminated raw foods. (rahman2024riskevaluationand pages 3-4, tan2024asystematicreview pages 1-2, NCT01811784 chunk 1)
Agent: Nipah virus, genus Henipavirus, family Paramyxoviridae. The virus requires maximum-containment laboratory practices for live-virus work. Pteropus bats shed virus through saliva and urine without the fulminant disease seen in spillover hosts. (NCT01811784 chunk 1, pigeaud2023animalmodelsfor pages 1-2)
Suggested annotations include GO: virus entry into host cell; membrane fusion; viral genome replication; negative regulation of type-I interferon signaling; inflammatory response; cell–cell fusion, and cell types endothelial cell, neuron, bronchiolar epithelial cell, alveolar type-II cell, smooth-muscle cell, monocyte, NK cell, and CD8-positive T cell. Smooth-muscle cells can support prolonged high-titer replication without obvious cytopathic effect in vitro, so infection does not invariably equal tissue destruction.
Bulk immune-expression studies report TNF-α, IL-1β, IL-6, IL-8, CXCL10, and G-CSF perturbation, but validated diagnostic transcriptomic, proteomic, metabolomic, or lipidomic signatures are not established. No mature human single-cell atlas, spatial-transcriptomic map, integrated clinical multi-omics classifier, or validated genome-wide CRISPR dependency panel was identified. These should be marked insufficient evidence, not negative findings. (saha2024recentadvancesof pages 6-7)
Primary systems are the CNS, respiratory tract, and systemic vasculature. Suggested UBERON labels are brain, cerebral blood vessel, blood–brain barrier, lung, bronchial epithelium, pulmonary alveolus, blood vessel endothelium, kidney, liver, and heart. Major lesions include encephalitis with necrosis/perivascular cuffing, pulmonary edema and hemorrhage, endothelial syncytia, vasculitis, and thrombosis. Kidney, liver, and heart are secondary systemic targets. Disease is diffuse rather than consistently unilateral; lateralization is not characteristic. (fauscotino2024nipahvirusa pages 3-5, saha2024recentadvancesof pages 6-7, pigeaud2023animalmodelsfor pages 2-4)
Subcellular annotations include plasma membrane (G–receptor attachment and fusion), endosome (F trafficking/activation), cytoplasm (replication complex), and plasma-membrane lipid domains (M-mediated assembly). There is no established primary mitochondrial, lysosomal, or nuclear storage defect.
Onset is acute or subacute in children and adults rather than congenital or age-dependent. A pragmatic sequence is incubation → febrile/prodromal illness → respiratory or neurological deterioration → encephalitis/ARDS and multiorgan injury → death or recovery with possible neurological sequelae. The critical treatment window is probably before high viral burden, encephalitis, and irreversible vascular/neural injury. (chan2024nipahvirustherapeutics pages 1-4, chan2024nipahvirustherapeutics pages 12-14)
Most disease is self-limited through death or recovery, not chronically replicative lifelong disease. Nevertheless, persistent viral foci or delayed inflammatory/reactivation phenomena may produce relapsing or late-onset encephalitis months to years later. Spontaneous clinical remission occurs in survivors; no therapy-induced remission rate has been established.
No inheritance pattern, penetrance, carrier state, anticipation, or genetic counseling indication applies. Population risk is exposure-driven.
The 2024 global review synthesized 97 articles and found almost annual outbreaks in Bangladesh. Aggregate counts in another clinical review were 729 recognized cases and 424 deaths (58%). Country/outbreak CFRs varied from approximately 25% to 100%; mortality was generally below 40% in Malaysia and above 70% in Bangladesh, India, and the Philippines. The 2023 Bangladesh outbreak had 14 cases and 10 deaths (71%); Kerala’s September 2023 outbreak had six cases and two deaths. Kerala’s 2018 event included 23 infections (18 confirmed and five probable) and 21 deaths. (tan2024asystematicreview pages 1-2, anish2024pandemicpotentialof pages 1-2, hassan2024nipahvirusdisease pages 11-14, hassan2024nipahvirusdisease pages 9-11)
Because NiV is episodic and geographically focal, stable prevalence and annual incidence per 100,000 are not meaningful globally. Surveillance limitations likely cause underascertainment. No consistent sex ratio is established; occupational exposure produced male predominance in some swine-associated cohorts. All ages can be affected. (rahman2024riskevaluationand pages 3-4, chan2024nipahvirustherapeutics pages 1-4)
Diagnosis requires epidemiological suspicion plus laboratory confirmation. Recommended outbreak testing includes:
Experimental ephrin-B2-capture ELISA and lateral-flow formats can distinguish NiV/HeV antigen in research settings, but they are not replacements for validated public-health assays.
Clinical differentials include Japanese encephalitis, herpes simplex encephalitis, other arboviral encephalitides, bacterial meningitis, cerebral malaria, influenza/COVID-19 and other severe viral pneumonias, toxic-metabolic encephalopathy, and stroke. Exposure history, combined respiratory–neurological disease, clustering, and NiV-specific testing are discriminating.
Human genetic testing—WGS, WES, panels, CMA, karyotype, FISH, mitochondrial, or repeat-expansion testing—is not indicated for etiologic diagnosis. There is no population newborn or carrier screening. During outbreaks, contact identification, symptom surveillance, and targeted molecular testing constitute secondary prevention.
Mortality is high and usually occurs during acute encephalitic, respiratory, or multiorgan disease. Conventional five- or ten-year survival estimates are not applicable. Poor prognostic features plausibly include severe encephalopathy, coma, seizures, respiratory distress, high viral burden, and delayed supportive care, although validated bedside prognostic models are lacking. (chan2024nipahvirustherapeutics pages 1-4, anish2024pandemicpotentialof pages 2-3)
Survivors can recover substantially but remain at risk for paralysis, cognitive/sensory/motor deficits, oculomotor dysfunction, psychiatric or functional consequences, and late encephalitis. There is no validated prognostic molecular biomarker. Viral RNA burden, inflammatory mediators, and neutralizing-antibody responses remain research measures rather than approved prognostic tests. (chan2024nipahvirustherapeutics pages 1-4, saha2024recentadvancesof pages 6-7)
There is no licensed NiV-specific drug or human vaccine. Management consists of isolation and infection prevention, oxygen and ventilatory support, fluid/electrolyte management, hemodynamic and renal support, seizure treatment, treatment of secondary infections, nutrition, pressure-injury prevention, and rehabilitation. Suggested MAXO labels include supportive care, intensive-care management, mechanical ventilation, anticonvulsant therapy, renal replacement therapy, physical therapy, occupational therapy, and speech therapy. (chan2024nipahvirustherapeutics pages 4-6, fauscotino2024nipahvirusa pages 7-9)
The clearest 2024 expert assessment was that only m102.4 and remdesivir had sufficient evidence to prioritize for trials, alone or in combination, for prophylaxis or early treatment. This is a prioritization judgment, not proof of clinical efficacy. PK/PD optimization and pre-positioned adaptive outbreak protocols are essential. (chan2024nipahvirustherapeutics pages 12-14, chan2024nipahvirustherapeutics pages 1-4)
These studies address safety and immunogenicity, not clinical disease prevention. Gene therapy, cell therapy, surgery, and genotype-guided treatment are not applicable.
Primary prevention: avoid raw date-palm sap and fruit contaminated by bats; boil/pasteurize sap; cover collection sites with bat-exclusion skirts; use gloves and respiratory/eye protection when handling sick livestock; improve farm biosecurity and separate pigs from bat-attracting fruit trees. (NCT01811784 chunk 1)
Secondary prevention: rapid case recognition and RT-PCR confirmation, immediate isolation, contact tracing and active monitoring, safe specimen handling, appropriate PPE, and targeted testing. Healthcare-associated superspreading makes ventilation, hand hygiene, droplet/contact precautions, and escalation to airborne precautions for aerosol-generating procedures especially important. (anish2024pandemicpotentialof pages 1-2)
Tertiary prevention: aggressive organ support, seizure control, prevention of aspiration and secondary infection, and long-term neurological rehabilitation.
There is no licensed immunization or established antiviral prophylaxis. m102.4 and remdesivir prophylaxis remain investigational. Community engagement and One Health surveillance of humans, bats, livestock, food production, and land-use change are authoritative priorities. (tan2024asystematicreview pages 1-2, chan2024nipahvirustherapeutics pages 12-14)
Pteropus fruit bats—including Pteropus medius in South Asia—are principal reservoirs. Pigs were amplification hosts in Malaysia/Singapore; 93% of patients in the original setting had direct infected-swine contact. Horses were implicated in the Philippines. Infection or serological evidence has also occurred in dogs and cats near outbreaks. Breed-specific VBO associations and orthologous “disease genes” are not applicable. (anish2024pandemicpotentialof pages 2-3, pigeaud2023animalmodelsfor pages 1-2)
Cross-species susceptibility is facilitated by conservation of EFNB2/B3. Spillover hosts develop much more severe respiratory, neurological, and vascular disease than reservoir bats. Swine are both veterinary disease hosts and epidemiologically important amplifiers, making livestock vaccination and surveillance potentially valuable One Health interventions.
No standard transgenic, knockout, humanized, zebrafish, Drosophila, yeast, organoid, or iPSC model has supplanted challenge models. Model outcomes depend strongly on viral strain, dose, route, and age, so cross-study efficacy comparisons require standardized challenge stocks and endpoints.
The evidence base is constrained by small, unpredictable outbreaks, limited access to acute specimens, BSL-4 requirements, nonrandomized compassionate treatment, and heterogeneous case definitions. Consequently, outbreak CFRs should retain year/location provenance; animal protection must not be presented as demonstrated human efficacy; and host entry genes must not be misclassified as causal germline genes. The 2024 systematic review’s abstract accurately summarizes the central development gap: many countermeasures protect animals, but only a small number have entered human trials. (tan2024asystematicreview pages 1-2, chan2024nipahvirustherapeutics pages 4-6)
References
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(chan2024nipahvirustherapeutics pages 1-4): Xin Hui S Chan, Ilsa L Haeusler, Bennett J K Choy, Md Zakiul Hassan, Junko Takata, Tara P Hurst, Luke M Jones, Shanghavie Loganathan, Elinor Harriss, Jake Dunning, Joel Tarning, Miles W Carroll, Peter W Horby, and Piero L Olliaro. Nipah virus therapeutics: a systematic review to support prioritisation for clinical trials. MedRxiv, Mar 2024. URL: https://doi.org/10.1101/2024.03.11.24304091, doi:10.1101/2024.03.11.24304091. This article has 4 citations.
(saha2024recentadvancesof pages 6-7): Sagnik Saha, Manojit Bhattacharya, Sang-Soo Lee, and Chiranjib Chakraborty. Recent advances of nipah virus disease: pathobiology to treatment and vaccine advancement. Journal of microbiology, 62:811-828, Sep 2024. URL: https://doi.org/10.1007/s12275-024-00168-3, doi:10.1007/s12275-024-00168-3. This article has 8 citations and is from a peer-reviewed journal.
(brown2023immunopathogenesisofnipah pages 5-7): Brent Brown, Tanya Gravier, Ingo Fricke, Suhaila A. Al-Sheboul, Theodor-Nicolae Carp, Chiuan Yee Leow, Chinua Imarogbe, and Javad Arabpour. Immunopathogenesis of nipah virus infection and associated immune responses. Immuno, 3:160-181, Apr 2023. URL: https://doi.org/10.3390/immuno3020011, doi:10.3390/immuno3020011. This article has 19 citations.
(anish2024pandemicpotentialof pages 9-10): Thekkumkara Surendran Anish, Reghukumar Aravind, Chandni Radhakrishnan, Nivedita Gupta, Pragya D. Yadav, Jerin Jose Cherian, Rima Sahay, Shubin Chenayil, Anoop Kumar A. S., Anitha Puduvail Moorkoth, Ashadevi, Velichapat Ramakrishnan Lathika, Shamsudeen Moideen, Sekhar Lukose Kuriakose, Kalathil Joseph Reena, and Thomas Mathew. Pandemic potential of the nipah virus and public health strategies adopted during outbreaks: lessons from kerala, india. PLOS Global Public Health, 4:e0003926, Dec 2024. URL: https://doi.org/10.1371/journal.pgph.0003926, doi:10.1371/journal.pgph.0003926. This article has 26 citations and is from a peer-reviewed journal.
(chan2024nipahvirustherapeutics pages 4-6): Xin Hui S Chan, Ilsa L Haeusler, Bennett J K Choy, Md Zakiul Hassan, Junko Takata, Tara P Hurst, Luke M Jones, Shanghavie Loganathan, Elinor Harriss, Jake Dunning, Joel Tarning, Miles W Carroll, Peter W Horby, and Piero L Olliaro. Nipah virus therapeutics: a systematic review to support prioritisation for clinical trials. MedRxiv, Mar 2024. URL: https://doi.org/10.1101/2024.03.11.24304091, doi:10.1101/2024.03.11.24304091. This article has 4 citations.
(NCT01811784 chunk 2): Community Intervention to Prevent Nipah Spillover. International Centre for Diarrhoeal Disease Research, Bangladesh. 2012. ClinicalTrials.gov Identifier: NCT01811784
(anish2024pandemicpotentialof pages 1-2): Thekkumkara Surendran Anish, Reghukumar Aravind, Chandni Radhakrishnan, Nivedita Gupta, Pragya D. Yadav, Jerin Jose Cherian, Rima Sahay, Shubin Chenayil, Anoop Kumar A. S., Anitha Puduvail Moorkoth, Ashadevi, Velichapat Ramakrishnan Lathika, Shamsudeen Moideen, Sekhar Lukose Kuriakose, Kalathil Joseph Reena, and Thomas Mathew. Pandemic potential of the nipah virus and public health strategies adopted during outbreaks: lessons from kerala, india. PLOS Global Public Health, 4:e0003926, Dec 2024. URL: https://doi.org/10.1371/journal.pgph.0003926, doi:10.1371/journal.pgph.0003926. This article has 26 citations and is from a peer-reviewed journal.
(NCT06221813 chunk 1): Study to Evaluate Safety and Immunogenicity of a Prime-Boost Regimen of rVSV-Nipah Virus Vaccine Candidate PHV02 in Healthy Adult Subjects. Public Health Vaccines LLC. 2024. ClinicalTrials.gov Identifier: NCT06221813
(pigeaud2023animalmodelsfor pages 34-35): Declan D. Pigeaud, Thomas W. Geisbert, and Courtney Woolsey. Animal models for henipavirus research. Viruses, 15:1980, Sep 2023. URL: https://doi.org/10.3390/v15101980, doi:10.3390/v15101980. This article has 40 citations.
(pigeaud2023animalmodelsfor pages 35-36): Declan D. Pigeaud, Thomas W. Geisbert, and Courtney Woolsey. Animal models for henipavirus research. Viruses, 15:1980, Sep 2023. URL: https://doi.org/10.3390/v15101980, doi:10.3390/v15101980. This article has 40 citations.
(pigeaud2023animalmodelsfor pages 24-26): Declan D. Pigeaud, Thomas W. Geisbert, and Courtney Woolsey. Animal models for henipavirus research. Viruses, 15:1980, Sep 2023. URL: https://doi.org/10.3390/v15101980, doi:10.3390/v15101980. This article has 40 citations.
(pigeaud2023animalmodelsfor pages 2-4): Declan D. Pigeaud, Thomas W. Geisbert, and Courtney Woolsey. Animal models for henipavirus research. Viruses, 15:1980, Sep 2023. URL: https://doi.org/10.3390/v15101980, doi:10.3390/v15101980. This article has 40 citations.
(chan2024nipahvirustherapeutics pages 6-8): Xin Hui S Chan, Ilsa L Haeusler, Bennett J K Choy, Md Zakiul Hassan, Junko Takata, Tara P Hurst, Luke M Jones, Shanghavie Loganathan, Elinor Harriss, Jake Dunning, Joel Tarning, Miles W Carroll, Peter W Horby, and Piero L Olliaro. Nipah virus therapeutics: a systematic review to support prioritisation for clinical trials. MedRxiv, Mar 2024. URL: https://doi.org/10.1101/2024.03.11.24304091, doi:10.1101/2024.03.11.24304091. This article has 4 citations.
(kallon2024therapeuticadvancementin pages 6-7): Mary K. Kallon, Daniel Maada Mami, Emmanuel Tom Mami, Mariam Romba, M. Patrick Andrew, and M. Sylvester Martain. Therapeutic advancement in treatment and prevention of nipah viral infection: a review. Asian Journal of Research in Infectious Diseases, 15:51-65, Apr 2024. URL: https://doi.org/10.9734/ajrid/2024/v15i4343, doi:10.9734/ajrid/2024/v15i4343. This article has 5 citations.
(NCT05398796 chunk 2): Dose Escalation, Open-Label Clinical Trial to Evaluate Safety, Tolerability and Immunogenicity of a Nipah Virus (NiV) mRNA Vaccine, mRNA-1215, in Healthy Adults. National Institute of Allergy and Infectious Diseases (NIAID). 2022. ClinicalTrials.gov Identifier: NCT05398796
(mishra2024advancementsinnipah pages 11-12): Gayatree Mishra, Vishal Prajapat, and Debasis Nayak. Advancements in nipah virus treatment: analysis of current progress in vaccines, antivirals, and therapeutics. Immunology, 171:155-169, Sep 2024. URL: https://doi.org/10.1111/imm.13695, doi:10.1111/imm.13695. This article has 78 citations and is from a peer-reviewed journal.