Microcephaly 27, primary, autosomal dominant (MCPH27) is a severe congenital primary microcephaly caused by heterozygous, usually de novo, missense variants in LMNB2, which encodes the B-type nuclear lamin lamin B2. It was defined together with the LMNB1 form (MCPH26) as a lamin B-associated laminopathy. Affected individuals have severe microcephaly present from birth without intrauterine growth restriction or major malformations, global developmental delay of variable severity, and, in a minority, seizures; neuroimaging shows a small, structurally normal brain, sometimes with a simplified gyral pattern and reduced white matter, and no neuronal migration defect. The reported variants (recurrent p.Glu398Lys and p.Asn54His) alter conserved residues at dimer interfaces of the lamin coiled-coil rod and are proposed to act dominantly on lamin filament assembly; transfected variant lamin B2 forms nuclear aggregates and distorts nuclear shape. How a defective nuclear lamina reduces cortical neuron output is not established: disrupted spindle orientation in neural progenitors and mechanical fragility of progenitor nuclei are the two hypotheses proposed.
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name: Microcephaly 27, Primary, Autosomal Dominant
creation_date: "2026-10-15T15:45:00Z"
category: Mendelian
disease_term:
preferred_term: microcephaly 27, primary, autosomal dominant
term:
id: MONDO:0030929
label: microcephaly 27, primary, autosomal dominant
synonyms:
- MCPH27
- LMNB2-related primary microcephaly
description: >-
Microcephaly 27, primary, autosomal dominant (MCPH27) is a severe congenital
primary microcephaly caused by heterozygous, usually de novo, missense
variants in LMNB2, which encodes the B-type nuclear lamin lamin B2. It was
defined together with the LMNB1 form (MCPH26) as a lamin B-associated
laminopathy. Affected individuals have severe microcephaly present from birth
without intrauterine growth restriction or major malformations, global
developmental delay of variable severity, and, in a minority, seizures;
neuroimaging shows a small, structurally normal brain, sometimes with a
simplified gyral pattern and reduced white matter, and no neuronal migration
defect. The reported variants (recurrent p.Glu398Lys and p.Asn54His) alter
conserved residues at dimer interfaces of the lamin coiled-coil rod and are
proposed to act dominantly on lamin filament assembly; transfected variant
lamin B2 forms nuclear aggregates and distorts nuclear shape. How a defective
nuclear lamina reduces cortical neuron output is not established: disrupted
spindle orientation in neural progenitors and mechanical fragility of
progenitor nuclei are the two hypotheses proposed.
parents:
- autosomal dominant primary microcephaly
references:
- reference: PMID:33033404
title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
- reference: PMID:20145110
title: Abnormal development of the cerebral cortex and cerebellum in the setting of lamin B2 deficiency.
- reference: PMID:21976703
title: Deficiencies in lamin B1 and lamin B2 cause neurodevelopmental defects and distinct nuclear shape abnormalities in neurons.
- reference: PMID:22116031
title: Mouse B-type lamins are required for proper organogenesis but not by embryonic stem cells.
- reference: PMID:40011009
title: Homozygous loss of function variant in LMNB2 gene causes major brain malformation and perinatal death.
inheritance:
- name: Autosomal dominant inheritance
inheritance_term:
preferred_term: Autosomal dominant inheritance
term:
id: HP:0000006
label: Autosomal dominant inheritance
description: >-
Heterozygous LMNB2 missense variants, de novo in most reported cases. In
one family the variant was transmitted from a clinically unaffected mother
who was mosaic for it, so parental mosaicism is a recurrence-risk
consideration; this is parental mosaicism and is not bound to HP:0001442.
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
For cases P4, P5, and P12, the variant was established to be de novo,
while in P7, it had been inherited from the proband's mosaic, clinically
unaffected, mother
explanation: >-
De novo heterozygous LMNB2 p.Glu398Lys in three probands and transmission
from a mosaic parent in a fourth support dominant inheritance with
parental mosaicism as a recurrence route.
mechanistic_hypotheses:
- hypothesis_group_id: lamin_b_progenitor_spindle_orientation
hypothesis_label: Lamin B Spindle-Orientation Defect in Neural Progenitors
status: EMERGING
description: >-
B-type lamins associate with the mitotic spindle, and mice lacking B-type
lamins show spindle-orientation defects in neural progenitors. The
hypothesis is that dominant LMNB2 variants perturb progenitor division in
the same way, depleting the progenitor pool and reducing neuron output. It
has not been tested with the human variants.
- hypothesis_group_id: lamin_b_progenitor_nuclear_fragility
hypothesis_label: Nuclear Fragility of Neural Progenitors
status: EMERGING
description: >-
A lamina built partly from assembly-defective lamin B2 may leave progenitor
and migrating-neuron nuclei mechanically fragile, so that the stresses of
interkinetic nuclear migration and neuronal migration increase cell death
during cortical development. Proposed by analogy to LMNA variants; not
tested with LMNB2 variants.
pathophysiology:
- name: LMNB2 Rod-Domain Missense Variant Disrupting Lamin B2 Dimer Assembly
description: >-
Heterozygous missense variants alter conserved residues in coiled-coil
segments of the lamin B2 alpha-helical rod: Asn54 at the coil 1A intradimer
interface and Glu398 at the coil 2B intradimer interface. Glu398 normally
repels the Glu398 of the partner chain; the p.Glu398Lys substitution is
predicted by structural modeling on lamin A/C structures to aberrantly
stabilize mixed mutant/wild-type dimers. The variants are proposed to act
dominantly on assembly of the lamin B2 filament that forms part of the
nuclear lamina, rather than by haploinsufficiency.
biological_scale: MOLECULAR
genetic_context:
functional_impact_category: DOMINANT_NEGATIVE
variant_origin: DE_NOVO
zygosity: HETEROZYGOUS
allele_type: missense
description: >-
Recurrent de novo missense variants at specific residues and the absence
of truncating variants led the reporting authors to favor a dominant
negative mechanism (with gain of function not excluded) over
haploinsufficiency. This is an inference from the variant spectrum and
structural modeling, not a measured effect on endogenous lamin B2.
genes:
- preferred_term: LMNB2
term:
id: hgnc:6638
label: LMNB2
molecular_functions:
- preferred_term: structural constituent of nuclear lamina
term:
id: GO:0160123
label: structural constituent of nuclear lamina
modifier: DYSREGULATED
cellular_components:
- preferred_term: nuclear lamina
term:
id: GO:0005652
label: nuclear lamina
- preferred_term: lamin filament
term:
id: GO:0005638
label: lamin filament
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We identified four microcephalic individuals from the DDD cohort (P4, P5,
P6, P7) and one individual from the 100kGP study (P12) with the same
variant in LMNB2
explanation: >-
Identifies the recurrent LMNB2 p.Glu398Lys variant in five microcephalic
individuals, the human genetic basis of the upstream lesion.
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: COMPUTATIONAL
snippet: >-
Therefore the heterozygous LMNB2 p.Glu398Lys substitution would result in
a subset of mismatched dimers in which, instead, interaction of the two
chains would be aberrantly stabilized
explanation: >-
Structural modeling on homologous lamin A/C structures predicts that the
recurrent variant aberrantly stabilizes mutant/wild-type dimers, the
basis for a dominant effect on filament assembly.
directness: INDIRECT
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The pathogenic variants reported here are most likely dominant negative
rather than haploinsufficient given that microcephaly is not present in
the Lmnb1+/- mouse.
explanation: >-
The reporting authors' interpretation of the variant spectrum favors a
dominant negative rather than haploinsufficient mechanism.
directness: INDIRECT
downstream:
- target: Nuclear Lamina Assembly Defect with Lamin Aggregates
description: >-
Assembly-defective lamin B2 is incorporated into the lamina and disrupts
its higher-order organization.
- name: Nuclear Lamina Assembly Defect with Lamin Aggregates
description: >-
Cells expressing GFP-tagged lamin B2 carrying the microcephaly variants
frequently contain nuclear lamin aggregates and show altered nuclear
morphology, consistent with disrupted lamin assembly in cells. The
experiment used overexpression above endogenous levels, and the effect has
not been shown in patient neural cells.
biological_scale: CELLULAR
genes:
- preferred_term: LMNB2
term:
id: hgnc:6638
label: LMNB2
biological_processes:
- preferred_term: nuclear envelope organization
term:
id: GO:0006998
label: nuclear envelope organization
modifier: DYSREGULATED
cellular_components:
- preferred_term: nuclear lamina
term:
id: GO:0005652
label: nuclear lamina
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Cells expressing the LMNB1/B2 variants frequently contained nuclear
aggregates and/or significantly altered nuclear morphology in comparison
to cells expressing wild-type GFP-LMNB1/2
explanation: >-
Transfected variant lamin B2 forms nuclear aggregates and distorts nuclear
shape, the cellular readout of the assembly defect.
downstream:
- target: Neural Progenitor Spindle Misorientation
description: >-
Hypothesized: a defective B-type lamina perturbs spindle orientation in
dividing neural progenitors.
hypothesis_groups:
- lamin_b_progenitor_spindle_orientation
- target: Neural Progenitor Nuclear Fragility and Cell Death
description: >-
Hypothesized: a defective lamina leaves progenitor nuclei fragile under
the mechanical stresses of interkinetic nuclear migration and neuronal
migration.
hypothesis_groups:
- lamin_b_progenitor_nuclear_fragility
- name: Neural Progenitor Spindle Misorientation
conforms_to: neural_progenitor_centrosome_spindle_dysfunction#Abnormal Progenitor Division and Fate Choice
description: >-
B-type lamins associate with the mitotic spindle, and mice lacking B-type
lamins show defects in spindle orientation in neural progenitor cells. The
reporting authors propose this as the mechanism of LMNB1/LMNB2
microcephaly, in line with the spindle defects of other primary
microcephaly genes. The evidence comes from null mice, not from the
heterozygous human missense variants.
biological_scale: CELLULAR
cell_types:
- preferred_term: neural progenitor cell
term:
id: CL:0011020
label: neural progenitor cell
- preferred_term: radial glial cell
term:
id: CL:0000681
label: radial glial cell
biological_processes:
- preferred_term: establishment of mitotic spindle orientation
term:
id: GO:0000132
label: establishment of mitotic spindle orientation
modifier: DYSREGULATED
evidence:
- reference: PMID:22116031
reference_title: Mouse B-type lamins are required for proper organogenesis but not by embryonic stem cells.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
directness: INDIRECT
snippet: >-
Defects in spindle orientation in neural progenitor cells and migration of
neurons probably cause brain disorganizations found in lamin-B null mice.
explanation: >-
Spindle-orientation defects in neural progenitors of lamin B-null mice;
indirect because the mice lack both B-type lamins rather than carrying a
dominant LMNB2 missense variant.
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
quote_role: BACKGROUND
directness: INDIRECT
snippet: >-
with defects in spindle orientation in neuronal precursor cells reported
in Lmnb1 and Lmnb2 knockout mice,17 suggesting this could be the mechanism
underlying microcephaly
explanation: >-
The human case report proposes the mouse spindle-orientation defect as
the mechanism of LMNB1/LMNB2 microcephaly; the observation it cites is
from knockout mice, not from this study.
downstream:
- target: Reduced Cortical Neuron Output
description: >-
Hypothesized: misoriented progenitor divisions deplete the progenitor
pool and reduce the number of cortical neurons generated.
hypothesis_groups:
- lamin_b_progenitor_spindle_orientation
- name: Neural Progenitor Nuclear Fragility and Cell Death
description: >-
The reporting authors propose that LMNB2 variants alter the physical
properties of lamin filaments, making the nuclei of neural progenitors
fragile under the mechanical stresses of interkinetic nuclear migration
and neuronal migration and increasing cell death during brain development.
The proposal rests on the analogous LMNA variant producing fragile nuclei;
increased apoptosis in the cortex has been observed in lamin B2-null mouse
embryos, but not with the human variants.
biological_scale: CELLULAR
cell_types:
- preferred_term: neural progenitor cell
term:
id: CL:0011020
label: neural progenitor cell
- preferred_term: neuron
term:
id: CL:0000540
label: neuron
biological_processes:
- preferred_term: interkinetic nuclear migration
term:
id: GO:0022027
label: interkinetic nuclear migration
modifier: DYSREGULATED
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: OTHER
directness: INDIRECT
snippet: >-
Such fragility in neuronal precursors would enhance susceptibility to
mechanical stresses of interkinetic nuclear migration and neuronal
migration and lead to increased cell death during brain development.
explanation: >-
States the nuclear-fragility hypothesis; it is a proposal in the
discussion, not an observation in LMNB2 variant cells.
- reference: PMID:21976703
reference_title: Deficiencies in lamin B1 and lamin B2 cause neurodevelopmental defects and distinct nuclear shape abnormalities in neurons.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
directness: INDIRECT
snippet: >-
In contrast, lamin B2 deficiency led to increased numbers of neurons with
elongated nuclei.
explanation: >-
Lamin B2-deficient mouse neurons have abnormally elongated nuclei,
supporting a role for lamin B2 in resisting nuclear deformation; indirect
because the model is a null rather than a dominant missense allele.
downstream:
- target: Reduced Cortical Neuron Output
description: >-
Hypothesized: loss of fragile progenitors and young neurons reduces the
number of cortical neurons.
hypothesis_groups:
- lamin_b_progenitor_nuclear_fragility
- name: Reduced Cortical Neuron Output
conforms_to: neural_progenitor_centrosome_spindle_dysfunction#Abnormal Cortical Neuron Output and Gyration
description: >-
Fewer cortical neurons are produced during fetal neurogenesis, giving a
small but structurally normal cerebral cortex. In mice, forebrain-specific
loss of lamin B2 reduces cortical neuron number and forebrain size.
biological_scale: TISSUE
cell_types:
- preferred_term: cortical neuron
term:
id: CL:0000540
label: neuron
biological_processes:
- preferred_term: cerebral cortex development
term:
id: GO:0021987
label: cerebral cortex development
modifier: DYSREGULATED
evidence:
- reference: PMID:21976703
reference_title: Deficiencies in lamin B1 and lamin B2 cause neurodevelopmental defects and distinct nuclear shape abnormalities in neurons.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
directness: INDIRECT
snippet: >-
Emx1-Cre Lmnb2fl/fl mice had fewer cortical neurons than did WT mice
explanation: >-
Forebrain-specific loss of lamin B2 reduces cortical neuron number;
indirect because it is a conditional null rather than the human dominant
missense genotype.
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In keeping with primary microcephaly, all but one case had a reduced OFC
evident at birth, and neuroimaging demonstrated a structurally normal
small brain with/without a simplified gyral pattern.
explanation: >-
A congenitally small but structurally normal brain is the human
expression of reduced prenatal cortical neuron output.
downstream:
- target: Primary microcephaly
description: Reduced cortical neuron output gives a small brain and head from birth.
- target: Simplified gyral pattern
description: A smaller cortical sheet forms fewer and simpler gyri in some patients.
- target: Reduced cerebral white matter volume
description: >-
Fewer cortical neurons project fewer axons, consistent with the global
reduction in white matter seen on imaging.
- target: Ventriculomegaly
description: >-
Ventricular enlargement accompanies the global reduction in white matter
volume rather than reflecting obstruction.
- target: Global developmental delay
description: Reduced cortical neuron number underlies the neurodevelopmental impairment.
- target: Seizure
description: Seizures occur in a minority of patients on the background of the small cortex.
phenotypes:
- name: Primary microcephaly
category: Neurological
frequency: VERY_FREQUENT
description: >-
Severe microcephaly present from birth in nearly all reported individuals,
without intrauterine growth restriction or other major malformations. The
published frequencies pool LMNB1 and LMNB2 cases.
phenotype_term:
preferred_term: Severe congenital primary microcephaly
term:
id: HP:0011451
label: Primary microcephaly
onset:
onset_category: CONGENITAL
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
A severe nonsyndromic microcephaly without other malformations was
consistently present.
explanation: Severe nonsyndromic microcephaly was present in every reported LMNB1/LMNB2 case.
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In keeping with primary microcephaly, all but one case had a reduced OFC
evident at birth
explanation: The reduced head circumference is congenital in all but one case.
- name: Global developmental delay
category: Neurological
description: >-
Global developmental delay of variable severity, severe in about half of
the DDD-ascertained cases.
phenotype_term:
preferred_term: Global developmental delay
term:
id: HP:0001263
label: Global developmental delay
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
global developmental delay varied substantially between cases, classified
as severe in four of eight DDD cases
explanation: Developmental delay is present with variable severity.
- name: Absent speech
category: Neurological
frequency: OCCASIONAL
phenotype_term:
preferred_term: Absent speech
term:
id: HP:0001344
label: Absent speech
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: with speech not attained in three older children
explanation: Three older children in the pooled LMNB1/LMNB2 cohort had not acquired speech.
- name: Seizure
category: Neurological
frequency: OCCASIONAL
phenotype_term:
preferred_term: Seizure
term:
id: HP:0001250
label: Seizure
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Global developmental delay of varying severity was evident and seizures
present in four cases
explanation: Seizures occurred in four of the thirteen pooled LMNB1/LMNB2 cases.
- name: Simplified gyral pattern
category: Neurological
frequency: OCCASIONAL
phenotype_term:
preferred_term: Simplified gyral pattern
term:
id: HP:0009879
label: Simplified gyral pattern
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In two cases gyral simplification was noted accompanied by global
reduction in white matter volume alongside increased extra-axial spaces
and enlarged ventricles.
explanation: Gyral simplification was seen on imaging in two cases.
- name: Reduced cerebral white matter volume
category: Neurological
frequency: OCCASIONAL
phenotype_term:
preferred_term: Reduced cerebral white matter volume
term:
id: HP:0034295
label: Reduced cerebral white matter volume
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In two cases gyral simplification was noted accompanied by global
reduction in white matter volume alongside increased extra-axial spaces
and enlarged ventricles.
explanation: Global white matter reduction accompanied gyral simplification in two cases.
- name: Ventriculomegaly
category: Neurological
frequency: OCCASIONAL
phenotype_term:
preferred_term: Ventriculomegaly
term:
id: HP:0002119
label: Ventriculomegaly
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Ventricular dilatation reflects accompanying global reduction in white
matter.
explanation: Enlarged ventricles accompany the reduced white matter rather than indicating obstruction.
- name: Sloping forehead
category: Craniofacial
phenotype_term:
preferred_term: Sloping forehead
term:
id: HP:0000340
label: Sloping forehead
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Facially, aside from a sloping forehead in some individuals, a syndromic
diagnosis was not evident, nor was a consistent facial gestalt observed
explanation: A sloping forehead was the only recurrent facial feature, seen in some individuals.
genetic:
- name: LMNB2
association: Causative
gene_term:
preferred_term: LMNB2
term:
id: hgnc:6638
label: LMNB2
notes: >-
No ClinGen gene-disease validity assertion for LMNB2 and this disease was
found in the committed ClinGen export (cache/clingen/gene_validity.csv), so
gene_disease_validity is left absent. Biallelic LMNB2 loss of function
(PMID:40011009, a perinatal-lethal brain malformation), homozygous
p.His157Tyr in progressive myoclonus epilepsy, and LMNB2 variants reported
in acquired partial lipodystrophy are different allelic conditions and are
not part of this entry.
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We identify dominant pathogenic variants in LMNB1 and LMNB2 as a genetic
cause of primary microcephaly
explanation: Establishes heterozygous LMNB2 variants as a cause of primary microcephaly.
treatments:
- name: Supportive and Developmental Care
description: >-
No disease-specific therapy exists. Management is supportive, with
developmental, physical, occupational and speech therapy according to need.
treatment_term:
preferred_term: Supportive Care
term:
id: NCIT:C15747
label: Supportive Care
- name: Anti-Seizure Medication
description: Standard anti-seizure medication for the minority of patients with seizures.
treatment_term:
preferred_term: Pharmacotherapy
term:
id: NCIT:C15986
label: Pharmacotherapy
- name: Genetic Counseling
description: >-
Counseling on de novo dominant inheritance, the 50% transmission risk from
an affected individual, and residual recurrence risk from parental
mosaicism, which has been documented in one family.
treatment_term:
preferred_term: Genetic Counseling
term:
id: NCIT:C15240
label: Genetic Counseling
animal_models:
- name: Lmnb2 knockout mouse
species: Mouse
genotype: Lmnb2 -/- (lacZ insertion in exon 1)
publication: PMID:20145110
description: >-
Lamin B2-null mice die shortly after birth with a lissencephaly-like
neuronal layering defect in the cerebral cortex and cerebellum caused by
defective neuronal migration, while brain size at birth is nearly normal.
modeled_mechanisms:
- target: Reduced Cortical Neuron Output
relationship: FAILS_TO_RECAPITULATE
fidelity: LOW
description: >-
The constitutive null does not reproduce congenital microcephaly; its
dominant brain phenotype is a neuronal migration defect that human
MCPH27 imaging does not show.
limitations: >-
A homozygous null allele, whereas MCPH27 is caused by heterozygous
missense variants proposed to act dominantly on lamin assembly;
heterozygous Lmnb2+/- mice are phenotypically normal. The model is closer
to the biallelic loss-of-function human phenotype (PMID:40011009).
evidence:
- reference: PMID:20145110
reference_title: Abnormal development of the cerebral cortex and cerebellum in the setting of lamin B2 deficiency.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: The brain was nearly normal in size
explanation: Lamin B2-null embryos have a nearly normal brain size, unlike the severe congenital microcephaly of MCPH27.
- name: Forebrain-specific Lmnb2 knockout mouse (Emx1-Cre Lmnb2fl/fl)
species: Mouse
genotype: Emx1-Cre Lmnb2 fl/fl
publication: PMID:21976703
description: >-
Conditional deletion of Lmnb2 in the forebrain gives a small forebrain
with fewer cortical neurons and disorganized neuronal layering in adult
mice.
modeled_mechanisms:
- target: Reduced Cortical Neuron Output
relationship: PARTIALLY_RECAPITULATES
fidelity: LOW
description: >-
Reproduces reduced cortical neuron number and small forebrain, the
tissue-level outcome of MCPH27.
limitations: >-
A conditional null rather than a dominant missense allele, and the mice
also have disorganized neuronal layering, which MCPH27 patients do not
show on imaging.
evidence:
- reference: PMID:21976703
reference_title: Deficiencies in lamin B1 and lamin B2 cause neurodevelopmental defects and distinct nuclear shape abnormalities in neurons.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
The forebrain-specific Lmnb1- and Lmnb2-knockout models had a small
forebrain with disorganized layering of neurons and nuclear shape
abnormalities
explanation: Forebrain loss of lamin B2 reduces forebrain size, the outcome modeled by this link.
discussions:
- discussion_id: mcph27_null_mouse_versus_dominant_missense
prompt: >-
Do the brain phenotypes of lamin B2-null mice, which center on neuronal
migration, tell us anything about how heterozygous dominant LMNB2 missense
variants cause microcephaly without a migration defect?
kind: HUMAN_MODEL_MISMATCH
status: OPEN
attaches_to:
- pathophysiology#Neural Progenitor Spindle Misorientation
- pathophysiology#Neural Progenitor Nuclear Fragility and Cell Death
- pathophysiology#Reduced Cortical Neuron Output
rationale: >-
Every mechanistic step below the lamina defect is supported only by null
or double-null mice. Those mice show cortical layering and migration
defects, and the constitutive Lmnb2 null has a nearly normal brain size,
while patients with MCPH27 have severe congenital microcephaly with no
migration defect. The reporting authors attribute the difference to the
human variants acting dominantly rather than through loss of lamin B2.
No heterozygous knock-in of a patient variant and no patient-derived
neural cell or organoid model has been reported, so which of the proposed
progenitor mechanisms operates in MCPH27 is unknown.
evidence:
- reference: PMID:33033404
reference_title: Heterozygous lamin B1 and lamin B2 variants cause primary microcephaly and define a novel laminopathy.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
quote_role: BACKGROUND
snippet: >-
there were neuronal migration defects resulting in abnormal layering of
the cerebral cortex,18 suggesting potential discordance with the human
phenotype and neuroimaging findings
explanation: The reporting authors identify the discordance between the knockout mouse brain phenotype and the human disease.
notes: >-
Phenotype frequencies come from the founding report, which pools six LMNB2
and seven LMNB1 individuals; per-gene detail is in its supplementary tables.
LMNB1-related microcephaly (MCPH26) has the same clinical picture but is a
separate MONDO disease and is not covered here. The molecular function
binding GO:0160123 (structural constituent of nuclear lamina) is the GO
term for the activity of a lamina structural protein; current QuickGO
annotation of human LMNB2 (UniProt Q03252) carries the broader
phylogenetically inferred GO:0005200 (structural constituent of
cytoskeleton).
Deep research results are used as seeds for research; they do not undergo the same validation as the main records and may contain errors. How we use deep research.
Create: Microcephaly 27, Primary, Autosomal Dominant · 2026-10-15T15:43:56Z · View source
New standalone entry for MCPH27 (MONDO:0030929), caused by heterozygous, mostly de novo LMNB2 missense variants. Kept separate from Autosomal_Recessive_Primary_Microcephaly (whose MONDO descendants exclude MCPH26/MCPH27), from the LMNB1 form (MCPH26, no entry yet), and from LMNB2 allelic conditions (biallelic LoF perinatal brain malformation, PME, acquired partial lipodystrophy). Deep-research report: research/Microcephaly_27_Primary_Autosomal_Dominant-deep-research-claude_code.md (falcon returned 503, claude_code used). All snippets quoted from cached PMIDs 33033404, 20145110, 21976703, 22116031; the two progenitor-mechanism branches are recorded as EMERGING hypotheses because only null mice support them, with a HUMAN_MODEL_MISMATCH discussion. LMNB2 bound to GO:0160123 structural constituent of nuclear lamina. Validated with validate-disorders, validate-terms and count-verified-snippets.
I'm checking a few more mouse-model and mechanism citations before writing the MCPH27 report.
Scope and access. PubMed MCP search was not permitted in this session. The report rests on two sources:
references_cache/.Quotes marked [cached] are exact text from the cache files. Everything else is paraphrased. Fetch those references with just fetch-reference before taking a snippet from them.
The literature is very small. One primary case series reports six LMNB2 individuals. I found no follow-up case reports for 2022–2024 by web search. Several template sections therefore come back "no data".
Overview. MCPH27 is a dominant, mostly de novo form of severe primary microcephaly. It is caused by heterozygous missense variants in LMNB2, which encodes lamin B2, a component of the nuclear lamina. Parry et al. described it as a new kind of laminopathy, together with the LMNB1 form (MCPH26).
"We identify dominant pathogenic variants in LMNB1 and LMNB2 as a genetic cause of primary microcephaly, implicating a major structural component of the nuclear envelope in its etiology and defining a new form of laminopathy." — PMID:33033404 [cached]
| Identifier | Value | Source |
|---|---|---|
| MONDO | MONDO:0030929 | template; ClinVar Miner condition 30929 |
| OMIM (phenotype) | 619180 | LOVD #07163, PanelApp AUS |
| OMIM (gene) | *150341 LMNB2 (not verified this session) | — |
| Disease Ontology | DOID:0051038 | DO |
| Orphanet / ICD | No specific code found. Probably falls under a general primary microcephaly code. | — |
"in P7, it had been inherited from the proband's mosaic, clinically unaffected, mother" — PMID:33033404 [cached]
The data come from 13 LMNB1/LMNB2 patients analysed together. The paper gives pooled figures, so per-gene frequencies for the six LMNB2 individuals are only in its supplementary tables (S1–S3, S5), which I did not access.
| Phenotype | Type | Onset / course | Frequency (pooled) | Candidate HPO (verify every ID) |
|---|---|---|---|---|
| Severe microcephaly, OFC −5.85 ± 1.14 SD | sign | congenital, nonprogressive | 13/13 | Primary microcephaly HP:0011451 (now labelled "Congenital microcephaly"?); Severe microcephaly |
| Microcephaly present at birth | sign | neonatal | 12/13 ("all but one") | as above |
| Global developmental delay, mild to severe | neurodevelopmental | infancy | all; severe in 4/8 DDD cases | Global developmental delay HP:0001263 |
| Speech not attained | neurodevelopmental | childhood | 3 older children | Absent speech HP:0001344 |
| Intellectual disability | neurodevelopmental | childhood | implied (OMIM: "impaired intellectual development") | Intellectual disability HP:0001249 |
| Seizures | neurological | variable | 4/13 | Seizure HP:0001250 |
| Simplified gyral pattern | imaging | congenital, nonprogressive | 2/13 | Simplified gyral pattern HP:0009879 |
| Reduced white-matter volume, ventriculomegaly, wide extra-axial spaces | imaging | congenital | 2/13 | Ventriculomegaly HP:0002119; Reduced cerebral white matter volume (look up) |
| Sloping forehead | dysmorphic | congenital | "some" | Sloping forehead HP:0000340 |
| Normal birth weight and stature | negative finding | — | most | (state as absent IUGR / short stature) |
Key quotes [cached, PMID:33033404]:
"All LMNB1/2 cases had severe microcephaly (OFC −5.85 ± 1.14 SD, Fig. 2a, Table S5), evident from birth in all but one case."
"Global developmental delay of varying severity was evident and seizures present in four cases"
"Neuroimaging demonstrated a structurally normal brain, without evidence of abnormal neuronal migration"
"In P8, where serial scans were available, this was nonprogressive."
"global developmental delay varied substantially between cases, classified as severe in four of eight DDD cases, with speech not attained in three older children."
Notable negatives. There was no IUGR, no major malformations, no consistent facial gestalt and no migration defect on imaging.
Quality of life. No validated QoL data exist. The disability burden is set by the severity of developmental delay and intellectual disability and by the seizures.
Pathogenic variants (NM_032737.4) [cached]:
| Variant | Domain | Recurrence | De novo | gnomAD v2.1 |
|---|---|---|---|---|
| c.1192G>A p.(Glu398Lys) | coil 2B, intradimer interface | 5 individuals (P4, P5, P6, P7, P12) | P4, P5, P12; P7 inherited from mosaic mother | absent |
| c.160A>C p.(Asn54His) | coil 1A, intradimer interface | 1 | yes | absent |
"We identified four microcephalic individuals from the DDD cohort (P4, P5, P6, P7) and one individual from the 100kGP study (P12) with the same variant in LMNB2 (NM_032737.4: c.1192G>A, p.Glu398Lys)" [cached]
"The pathogenic variants reported here are most likely dominant negative rather than haploinsufficient given that microcephaly is not present in the Lmnb1+/− mouse. The recurrent nature of the pathogenic variants at specific residues and absence of truncating variants favors gain of function or dominant negative mechanisms." [cached]
The "Lmnb1+/−" argument is drawn from the paralog. No Lmnb2+/− brain-size data were cited.
- Origin: Germline; de novo or inherited from a mosaic parent.
- Classification:
- ClinVar Miner for MONDO condition 30929: 3 Pathogenic, 3 VUS and 1 Likely benign submissions (ClinVar Miner).
- PanelApp Green (high evidence) for severe microcephaly in both Genomics England and Australia (GE PanelApp, PanelApp AUS).
- I found no ClinGen gene-disease validity curation and no GenCC tier. Leave gene_disease_validity absent unless a source tier is found.
Allelic disorders of LMNB2 (keep these separate, see Section 9 on the lump/split question):
"Both newborns died in the perinatal period and exhibited a similar phenotype at birth, including severe brain development abnormalities, which closely mirror findings observed in several Lmnb2-deficient mouse models."
"Western blot and immunofluorescence cell labelling performed on the patient's fibroblasts obtained at birth confirmed the complete absence of lamin B2 and revealed an increase in lamin B1, together with alterations in alpha-tubulin and vimentin organisation."
Genomics England changed LMNB2's inheritance to "BOTH monoallelic and biallelic" in March 2026, presumably because of this report.
Other categories:
None reported for environmental, lifestyle or infectious factors. Not applicable.
"the heterozygous LMNB2 p.Glu398Lys substitution would result in a subset of mismatched dimers in which, instead, interaction of the two chains would be aberrantly stabilized" [cached] 3. This results in a dominant-negative "poisoning" of the higher-order lamina. (Inferred from recurrence, the absence of truncating variants, and the LMNA analogy.) 4. This results in nuclear lamin aggregates and abnormal nuclear shape. (In vitro, with GFP fusions overexpressed in cultured cells.)
"Cells expressing the LMNB1/B2 variants frequently contained nuclear aggregates and/or significantly altered nuclear morphology in comparison to cells expressing wild-type GFP-LMNB1/2" [cached]
"B-type lamins associate with the mitotic spindle21 with defects in spindle orientation in neuronal precursor cells reported in Lmnb1 and Lmnb2 knockout mice,17 suggesting this could be the mechanism underlying microcephaly." [cached]
"Such fragility in neuronal precursors would enhance susceptibility to mechanical stresses of interkinetic nuclear migration and neuronal migration and lead to increased cell death during brain development." [cached] 6. Both branches lead to fewer cortical neurons and a reduced cerebral cortex volume during fetal neurogenesis. (Inferred.) 7. This results in congenital microcephaly with a structurally normal or simplified-gyral brain and reduced white matter, followed by developmental delay, intellectual disability and, in some patients, seizures. (Human clinical: demonstrated.)
Discordance to record. Biallelic-null mice (and the 2025 biallelic-LoF human newborns) have migration defects and lissencephaly-like lamination. Heterozygous MCPH27 patients show no migration defect. This suggests the dominant missense mechanism is different from null loss. It is a good candidate for a HUMAN_MODEL_MISMATCH discussion.
| Category | Suggested terms |
|---|---|
| GO biological process | nuclear envelope organization (GO:0006998); intermediate filament cytoskeleton organization; mitotic spindle orientation (GO:0000132); cerebral cortex development (GO:0021987); neuron migration (GO:0001764); neural precursor cell proliferation (GO:0061351) |
| GO cellular component | nuclear lamina (GO:0005652); nuclear envelope; spindle |
| GO molecular function | structural molecule activity / structural constituent of nuclear lamina? (check) |
| CL | neural progenitor cell (CL:0011020); radial glial cell (CL:0000681); neuron (CL:0000540) |
Biological scale per node: variant, dimer and filament steps are MOLECULAR; aggregates, nuclear shape and spindle orientation are CELLULAR; cortical neuron number is TISSUE; microcephaly is ORGANISM.
Omics, single-cell and spatial data: None disease-specific. No GEO datasets were found (just discover-datasets was not run).
Inheritance. Autosomal dominant, usually de novo (HPO: Autosomal dominant inheritance HP:0000006; Sporadic HP:0003745 – verify).
Somatic mosaicism. One affected child inherited the variant from an unaffected mosaic mother. That is parental mosaicism, which the CLAUDE.md somatic-mosaicism guidance says must not be bound to HP:0001442. Record it as a recurrence-risk note instead.
Epidemiology. Ultra-rare; about 6 LMNB2 cases published.
measure_type: CASES_IN_LITERATUREprevalence_class: ULTRA_RARE or NOT_YET_DOCUMENTEDLump/split question for curation. The dominant missense microcephaly (MCPH27) and the recessive LoF perinatal-lethal brain malformation (PMID:40011009) have different inheritance, mechanism (dominant-negative vs null) and severity. Treat the 2025 recessive phenotype as a separate disease or allelic note, not as a subtype of MCPH27. The progressive myoclonus epilepsy (PME) and lipodystrophy associations are also separate.
There is no disease-specific therapy, and there are no clinical trials (none found). Management is supportive. Candidate NCIT terms below must be verified against the TreatmentTerm enum.
| Intervention | Candidate NCIT term | therapeutic_modality |
|---|---|---|
| Antiseizure medication for seizures | Pharmacotherapy NCIT:C15986 (+ therapeutic_agent only if a source names drugs) |
SMALL_MOLECULE |
| Early intervention: physical, occupational and speech therapy | Physical Therapy NCIT:C15302; Speech Language Therapy NCIT:C159273; Occupational therapy NCIT:C121351 | BEHAVIORAL |
| Genetic counseling (recurrence risk, parental mosaicism) | Genetic Counseling NCIT:C15240 | — |
| Developmental and educational support | Supportive Care NCIT:C15747 | — |
No primary source specific to MCPH27 supports these interventions. Cite general guidance or leave the evidence out rather than over-claim.
Pharmacogenomics, gene therapy, RNA therapies: None.
| Model | Phenotype | Recapitulation | Source |
|---|---|---|---|
| Lmnb2−/− mouse | Normal during development but dies soon after birth; disordered cortical layering, lissencephaly-like; neurons accumulate in the intermediate zone; hypoplastic cerebellum without sulci. Brain size not reduced at birth (per Parry). | Models biallelic LoF (the 2025 human phenotype) better than dominant MCPH27. Has a migration defect that MCPH27 lacks, so PARTIALLY / FAILS_TO_RECAPITULATE for MCPH27. | Coffinier et al., PNAS 2010, PMID:20145110 (PMC2841930) |
| Forebrain-specific Lmnb2 and Lmnb1/Lmnb2 double knockout | Small forebrain with disorganized layering; elongated, comet-shaped nuclei in Lmnb2-deficient neurons; double knockout gives cortical atrophy. | Small forebrain fits microcephaly; mechanism is null, not dominant-negative. | Coffinier et al., MBoC 2011, PMID:21976703 (PMC3226484) |
| Lmnb1/Lmnb2 knockouts (mouse ESCs and embryos) | ESCs do not need lamins; organogenesis does. Spindle-orientation defects in neural progenitors, proposed as the cause of brain disorganization. | Supports the mitotic branch (5a) of the causal chain. | Kim et al., Science 2011, PMID:22116031 (PMC3306219) |
| C. elegans LMN-1 with the ΔK46-equivalent change | Disrupted protofilament assembly; nuclear aggregates. | Shows the LMNB1 p.Lys33del paralog mechanism, not LMNB2 itself. | cited in PMID:33033404 |
| Cell overexpression, GFP-LMNB2 E398K/N54H | Nuclear aggregates; abnormal nuclear shape. | IN_VITRO; overexpressed above endogenous levels (a SUPRAPHYSIOLOGICAL caveat). | PMID:33033404 |
Gaps. There is no heterozygous knock-in (Lmnb2 E398K) mouse, no patient-derived iPSC or cortical organoid model, and no measurement of spindle orientation with the actual dominant variants. These are the key experiments that would test chain steps 3–6.
quote_role: BACKGROUND with MODEL_ORGANISM.gene_disease_validity.HUMAN_MODEL_MISMATCH discussion).runoak or the cache before it is written.Sources: - LOVD MCPH27 #07163 - PanelApp AUS – ID panel LMNB2 - PanelApp AUS – microcephaly LMNB2 - Genomics England PanelApp – LMNB2 - PanelApp AUS – lipodystrophy LMNB2 - Disease Ontology DOID:0051038 - ClinVar Miner, MONDO 30929 - Parry et al. 2021, PMC7862057 - Coffinier et al. 2010, PMC2841930 - Coffinier et al. 2011, PMID 21976703 - Kim et al. 2011, PMC3306219 - Damiano et al. 2015, PMID 25954030 - Hegele et al. 2006, PMID 16826530 - ZFIN lmnb2 - Desgrouas et al. 2025, J Med Genet, PMID:40011009 (cached)
Checked with linkml-reference-validator 0.3.0.
| Outcome | Count |
|---|---|
| References checked | 12 |
| Resolved | 12 |
| Unresolved (possible confabulation) | 0 |
| Unverifiable | 0 |
| References weighed for topical relevance | 12 |
| On topic | 7 |
| Off topic | 1 |
These identifiers resolve, so they are not fabrications, but the records they resolve to share almost none of this report's vocabulary. That is a clue and not a verdict - a paper can be relevant in ways its title and abstract do not spell out - so read them before deciding:
PMID:16543416 (1 mention) - Deconvolution of the factors contributing to the increase in global hurricane intensity.Weighed against this report's own most characteristic terms: lmnb2, microcephaly, mcph27, variant, phenotype, found, cached, brain, nuclear, patient, genetic, novo, lamin, lmnb1, dominant, primary, cortical, mechanism, reduced, mosaicism.
All extracted references resolved successfully. Resolving is not the same as being relevant, though - see the references listed above as possibly off topic.
Checked with linkml-term-validator 0.4.5, through the ols: adapter.
| Outcome | Count |
|---|---|
| Terms checked | 30 |
| Resolved | 30 |
| Unresolved (possible confabulation) | 0 |
| Obsolete | 0 |
| Unverifiable | 0 |
| Terms whose name was checked | 6 |
| Terms named correctly | 1 |
| Terms named as a different term | 4 |
| Terms whose name is worth a second look | 1 |
These identifiers resolve, so nothing about them looks wrong, and the ontology calls them something unrelated to what the report calls them. That usually means the identifier is not the one the sentence needs:
MONDO:0030929 (1 mention) - the report calls it "MONDO"; MONDO calls it microcephaly 27, primary, autosomal dominantDOID:0051038 (5 mentions) - the report calls it "Disease Ontology"; DOID calls it autosomal dominant primary microcephaly 27HP:0003745 (1 mention) - the report calls it "verify"; HP calls it SporadicNCIT:C15986 (1 mention) - the report calls it "+ therapeutic_agent only if a source names drugs"; NCIT calls it PharmacotherapyThe report's name for these is recognisably related to the term's own name without being one of them. A loose paraphrase reads the same way as a citation of the wrong sibling term - and so does a related synonym, which the ontology records precisely because it names something adjacent rather than the same thing - so these are listed rather than judged:
HP:0011451 (1 mention) - the report calls it "now labelled "Congenital microcephaly"?"; HP calls it Primary microcephaly, and lists "Congenital microcephaly" among its other names