Metachromatic leukodystrophy (MLD) is an autosomal recessive lysosomal storage leukodystrophy in which sulfatide degradation fails, leading to sulfatide accumulation, progressive central and peripheral demyelination, and worsening motor and cognitive dysfunction. The common cause is arylsulfatase A deficiency from biallelic ARSA variants; an uncommon form instead loses the activator protein saposin B through biallelic PSAP variants, leaving the enzyme itself intact.
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name: Metachromatic Leukodystrophy
creation_date: '2026-03-30T18:20:00Z'
description: >
Metachromatic leukodystrophy (MLD) is an autosomal recessive lysosomal
storage leukodystrophy in which sulfatide degradation fails, leading to
sulfatide accumulation, progressive central and peripheral demyelination, and
worsening motor and cognitive dysfunction. The common cause is arylsulfatase A
deficiency from biallelic ARSA variants; an uncommon form instead loses the
activator protein saposin B through biallelic PSAP variants, leaving the enzyme
itself intact.
category: Genetic
disease_term:
preferred_term: metachromatic leukodystrophy
term:
id: MONDO:0018868
label: metachromatic leukodystrophy
mappings:
mondo_mappings:
- term:
id: MONDO:0009590
label: metachromatic leukodystrophy due to saposin B deficiency
mapping_predicate: skos:narrowMatch
mapping_source: MONDO
mapping_justification: >
is_a the MONDO:0018868 anchor of this entry. This entry now curates PSAP
(hgnc:9498) and models this form explicitly as the "Saposin B-Deficient
MLD" has_subtypes entry, with its own pathophysiology node for the loss of
the activator protein. narrowMatch because the anchor also subsumes the
arylsulfatase A-deficient forms.
- term:
id: MONDO:0009591
label: metachromatic leukodystrophy, juvenile form
mapping_predicate: skos:narrowMatch
mapping_source: MONDO
mapping_justification: >
is_a the MONDO:0018868 anchor of this entry. This entry curates ARSA
(hgnc:713) and models the juvenile forms explicitly as the
"Early-Juvenile MLD" and "Late-Juvenile MLD" has_subtypes, so the
juvenile child term is covered here. narrowMatch because the anchor also
subsumes the late-infantile and adult forms.
- term:
id: MONDO:0017729
label: metachromatic leukodystrophy, late infantile form
mapping_predicate: skos:narrowMatch
mapping_source: MONDO
mapping_justification: >
Sits under MONDO:0009591, which is_a the MONDO:0018868 anchor of this
entry, so it is a descendant of the anchor. This entry models it
explicitly as the "Late-Infantile MLD" has_subtypes entry. narrowMatch
because the anchor subsumes the whole onset series.
- term:
id: MONDO:0017730
label: metachromatic leukodystrophy, adult form
mapping_predicate: skos:narrowMatch
mapping_source: MONDO
mapping_justification: >
Sits under MONDO:0009591, which is_a the MONDO:0018868 anchor of this
entry, so it is a descendant of the anchor. This entry models it
explicitly as the "Adult MLD" has_subtypes entry. narrowMatch because the
anchor subsumes the whole onset series.
synonyms:
- MLD
parents:
- Leukodystrophy
- Lysosomal Storage Disease
has_subtypes:
- name: Late-Infantile MLD
description: Earliest-onset form with rapid neurologic decline.
genes:
- preferred_term: ARSA
term:
id: hgnc:713
label: ARSA
evidence:
- reference: PMID:20301309
reference_title: Arylsulfatase A Deficiency.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
quote_role: REVIEW_SYNTHESIS
snippet: "Arylsulfatase A deficiency (also known as metachromatic leukodystrophy or MLD) is characterized by three clinical subtypes: late-infantile, juvenile, and adult MLD."
explanation: >-
The GeneReviews baseline chapter treats the onset subtypes as forms of
arylsulfatase A deficiency, supporting the ARSA binding on this row.
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Traditionally, MLD has been classified according to age at onset (late-infantile, early-juvenile and late-juvenile, and adult MLD), with earlier forms leading to more rapid neurologic decline."
explanation: This review explicitly recognizes late-infantile MLD as one of the major age-defined disease forms.
- name: Early-Juvenile MLD
description: Juvenile-onset form with intermediate tempo of progression.
genes:
- preferred_term: ARSA
term:
id: hgnc:713
label: ARSA
evidence:
- reference: PMID:20301309
reference_title: Arylsulfatase A Deficiency.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
quote_role: REVIEW_SYNTHESIS
snippet: "Arylsulfatase A deficiency (also known as metachromatic leukodystrophy or MLD) is characterized by three clinical subtypes: late-infantile, juvenile, and adult MLD."
explanation: >-
The GeneReviews baseline chapter treats the onset subtypes as forms of
arylsulfatase A deficiency, supporting the ARSA binding on this row.
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Traditionally, MLD has been classified according to age at onset (late-infantile, early-juvenile and late-juvenile, and adult MLD), with earlier forms leading to more rapid neurologic decline."
explanation: This review explicitly recognizes early-juvenile MLD as a major age-defined subtype.
- name: Late-Juvenile MLD
description: Later childhood form with slower progression than early-onset disease.
genes:
- preferred_term: ARSA
term:
id: hgnc:713
label: ARSA
evidence:
- reference: PMID:20301309
reference_title: Arylsulfatase A Deficiency.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
quote_role: REVIEW_SYNTHESIS
snippet: "Arylsulfatase A deficiency (also known as metachromatic leukodystrophy or MLD) is characterized by three clinical subtypes: late-infantile, juvenile, and adult MLD."
explanation: >-
The GeneReviews baseline chapter treats the onset subtypes as forms of
arylsulfatase A deficiency, supporting the ARSA binding on this row.
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Traditionally, MLD has been classified according to age at onset (late-infantile, early-juvenile and late-juvenile, and adult MLD), with earlier forms leading to more rapid neurologic decline."
explanation: This review explicitly recognizes late-juvenile MLD as a major age-defined subtype.
- name: Adult MLD
description: Later-onset form, often with slower neurologic progression.
genes:
- preferred_term: ARSA
term:
id: hgnc:713
label: ARSA
evidence:
- reference: PMID:20301309
reference_title: Arylsulfatase A Deficiency.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
quote_role: REVIEW_SYNTHESIS
snippet: "Arylsulfatase A deficiency (also known as metachromatic leukodystrophy or MLD) is characterized by three clinical subtypes: late-infantile, juvenile, and adult MLD."
explanation: >-
The GeneReviews baseline chapter treats the onset subtypes as forms of
arylsulfatase A deficiency, supporting the ARSA binding on this row.
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Traditionally, MLD has been classified according to age at onset (late-infantile, early-juvenile and late-juvenile, and adult MLD), with earlier forms leading to more rapid neurologic decline."
explanation: This review explicitly recognizes adult MLD as the latest-onset major disease subtype.
- name: Saposin B-Deficient MLD
display_name: Saposin B-deficient MLD (PSAP)
subtype_term:
preferred_term: metachromatic leukodystrophy due to saposin B deficiency
term:
id: MONDO:0009590
label: metachromatic leukodystrophy due to saposin B deficiency
description: >-
Uncommon form of MLD in which the lesion is in the sphingolipid activator
protein rather than in the enzyme. Biallelic PSAP variants affecting the
saposin B domain block sulfatide degradation while leaving arylsulfatase A
itself intact, so a reported case had ARSA activity within normal limits and
was diagnosed on the gene panel rather than by enzyme assay. This is an axis
orthogonal to the four age-at-onset rows above, which are all arylsulfatase A
deficiency.
genes:
- preferred_term: PSAP
term:
id: hgnc:9498
label: PSAP
evidence:
- reference: PMID:31319425
reference_title: "Saposin B-Deficient Metachromatic Leukodystrophy Mimicking Acute Flaccid Paralysis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "However, an uncommon form of MLD caused by saposin B deficiency is also described"
explanation: >-
Establishes saposin B deficiency as a recognized, uncommon form of MLD
distinct from the arylsulfatase A-deficient forms.
- reference: PMID:31319425
reference_title: "Saposin B-Deficient Metachromatic Leukodystrophy Mimicking Acute Flaccid Paralysis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "ARSA levels were within normal limits. Leukodystrophy gene panel revealed a homozygous pathogenic deletion (Lys227del variant) in prosaposin (PSAP) gene."
explanation: >-
A worked case with normal ARSA activity and a biallelic PSAP variant, which
is why this subtype can be missed by enzyme assay alone.
- reference: CGGV:assertion_4e24c4e4-a97d-4d08-abd9-e190fb001b9d-2023-07-20T160000.000Z
reference_title: "PSAP / metachromatic leukodystrophy due to saposin B deficiency (Definitive)"
supports: SUPPORT
evidence_source: OTHER
snippet: "PSAP | HGNC:9498 | metachromatic leukodystrophy due to saposin B deficiency | MONDO:0009590 | AR | Definitive"
explanation: >-
ClinGen's Lysosomal Diseases GCEP classifies the PSAP-saposin B MLD
gene-disease relationship as Definitive with autosomal recessive inheritance.
progression:
- phase: Early-onset rapidly progressive disease
notes: >
Earlier-onset MLD is associated with faster neurologic deterioration and
more severe loss of function.
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Traditionally, MLD has been classified according to age at onset (late-infantile, early-juvenile and late-juvenile, and adult MLD), with earlier forms leading to more rapid neurologic decline."
explanation: This review links earlier age of onset with more rapid neurologic decline.
- phase: Progressive motor and cognitive deterioration
notes: >
MLD evolves through progressive loss of motor and cognitive function as
demyelination and neurodegeneration worsen.
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "MLD is characterized by demyelination and neurodegeneration of the central and peripheral nervous system, manifesting as progressive motor and cognitive defects in affected individuals."
explanation: This supports progressive motor and cognitive decline as a core stage of MLD disease evolution.
pathophysiology:
- name: Arylsulfatase A Deficiency
conforms_to: "lysosomal_substrate_accumulation#Lysosomal Hydrolase or Cofactor Deficiency"
description: >
Disease-causing ARSA variants reduce arylsulfatase A activity in MLD.
genes:
- preferred_term: ARSA
term:
id: hgnc:713
label: ARSA
biological_processes:
- preferred_term: sphingolipid catabolic process
modifier: DYSREGULATED
term:
id: GO:0030149
label: sphingolipid catabolic process
molecular_functions:
- preferred_term: arylsulfatase activity
modifier: DECREASED
term:
id: GO:0004065
label: arylsulfatase activity
cellular_components:
- preferred_term: lysosome
term:
id: GO:0005764
label: lysosome
downstream:
- target: Reduced arylsulfatase A activity
description: ARSA pathogenic variants reduce arylsulfatase A enzyme activity.
causal_link_type: DIRECT
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is an autosomal recessive lysosomal storage disease mainly caused by a deficiency of arylsulfatase A activity."
explanation: This case-based report directly supports reduced ARSA enzyme activity as the proximal biochemical abnormality in MLD.
- target: Sulfatide Accumulation
description: Loss of arylsulfatase A activity leads directly to pathologic sulfatide storage.
causal_link_type: DIRECT
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is a rare autosomal recessive lysosomal storage disorder caused by disease-causing variants in the gene coding for arylsulfatase A, leading to deficient enzyme activity and subsequent accumulation of sulfatides."
explanation: This review directly links ARSA deficiency to subsequent sulfatide accumulation.
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is a rare autosomal recessive lysosomal storage disorder caused by disease-causing variants in the gene coding for arylsulfatase A, leading to deficient enzyme activity and subsequent accumulation of sulfatides."
explanation: This review directly links ARSA pathogenic variants to deficient enzyme activity in MLD.
- name: Saposin B Deficiency
conforms_to: "lysosomal_substrate_accumulation#Lysosomal Hydrolase or Cofactor Deficiency"
biological_scale: MOLECULAR
description: >-
A second, distinct entry point into the same pathograph. PSAP encodes
prosaposin, the precursor of the four sphingolipid activator proteins;
point mutations in its saposin B domain result in loss of mature saposin B,
the non-enzymatic protein that stimulates degradation of sulfatide by
arylsulfatase A in vivo. The hydrolase gene is untouched, but the catabolic
step still fails and sulfatide accumulates. This is a cofactor lesion, not an
enzyme lesion, and is the reason this node is separate from Arylsulfatase A
Deficiency rather than merged into it.
genes:
- preferred_term: PSAP
term:
id: hgnc:9498
label: PSAP
gene_products:
- preferred_term: saposin B
modifier: DECREASED
molecular_functions:
- preferred_term: enzyme activator activity
modifier: DECREASED
term:
id: GO:0008047
label: enzyme activator activity
cellular_components:
- preferred_term: lysosome
term:
id: GO:0005764
label: lysosome
downstream:
- target: Sulfatide Accumulation
description: >-
Loss of mature saposin B blocks arylsulfatase A-mediated sulfatide
degradation in vivo, so sulfatide accumulates despite normal enzyme levels.
causal_link_type: DIRECT
evidence:
- reference: PMID:10682309
reference_title: "A non-glycosylated and functionally deficient mutant (N215H) of the sphingolipid activator protein B (SAP-B) in a novel case of metachromatic leukodystrophy (MLD)."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "The mutations result in a loss of mature SAP-B, causing the lysosomal accumulation of sulphatides and other sphingolipids, resulting in variant forms of metachromatic leukodystrophy (MLD)."
explanation: >-
States the causal step this edge asserts: loss of mature saposin B leads
to lysosomal sulfatide accumulation and an MLD phenotype.
evidence:
- reference: PMID:10682309
reference_title: "A non-glycosylated and functionally deficient mutant (N215H) of the sphingolipid activator protein B (SAP-B) in a novel case of metachromatic leukodystrophy (MLD)."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "In vivo SAP-B stimulates in particular the degradation of sulphatides by arylsulphatase A."
explanation: >-
Establishes saposin B as the activator of the arylsulfatase A step, which is
what makes its loss a cofactor deficiency at this node.
- reference: CGGV:assertion_4e24c4e4-a97d-4d08-abd9-e190fb001b9d-2023-07-20T160000.000Z
reference_title: "PSAP / metachromatic leukodystrophy due to saposin B deficiency (Definitive)"
supports: SUPPORT
evidence_source: OTHER
snippet: "Saposin B activates the hydrolysis of cerebroside sulfate (sulfatide) by arylsulphatase A (ARSA)."
explanation: >-
ClinGen's curation summary states the same activator relationship, and
curates PSAP separately from ARSA on the strength of it.
- name: Sulfatide Accumulation
conforms_to: "lysosomal_substrate_accumulation#Lysosomal Substrate Accumulation"
description: >
Pathologic sulfatide storage is the immediate biochemical consequence of
arylsulfatase A deficiency in MLD.
biological_processes:
- preferred_term: sphingolipid catabolic process
modifier: DYSREGULATED
term:
id: GO:0030149
label: sphingolipid catabolic process
chemical_entities:
- preferred_term: sulfatide
modifier: INCREASED
term:
id: CHEBI:18318
label: galactosylceramide sulfate
downstream:
- target: Sulfatide storage burden
description: Stored sulfatides are the core chemical biomarker of the lysosomal storage lesion.
causal_link_type: DIRECT
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is a rare autosomal recessive lysosomal storage disorder caused by disease-causing variants in the gene coding for arylsulfatase A, leading to deficient enzyme activity and subsequent accumulation of sulfatides."
explanation: This review directly supports sulfatide accumulation as the storage biomarker downstream of ARSA deficiency.
- target: Urinary sulfatide excretion
description: Excess sulfatides are excreted in urine and provide a diagnostic biochemical readout.
causal_link_type: DIRECT
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "extraction of urine showed a large increase in sulfatide excretion in a second laboratory."
explanation: This report directly documents increased urinary sulfatide excretion in a patient with confirmed MLD.
- target: Central Nervous System Demyelination
description: Sulfatide accumulation contributes directly to demyelination within the CNS.
causal_link_type: DIRECT
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is a rare autosomal recessive lysosomal storage disorder caused by disease-causing variants in the gene coding for arylsulfatase A, leading to deficient enzyme activity and subsequent accumulation of sulfatides."
explanation: This abstract directly supports sulfatide accumulation, and partially supports its downstream role in the demyelinating disease process described for MLD.
- target: Demyelinating Polyneuropathy
description: Sulfatide storage also contributes to demyelinating peripheral nerve disease.
causal_link_type: DIRECT
evidence:
- reference: PMID:38564053
reference_title: "Progressive demyelinating polyneuropathy after hematopoietic cell transplantation in metachromatic leukodystrophy: a case series."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is a neuro-metabolic disorder due to arylsulfatase A deficiency, causing demyelination of the central and peripheral nervous system."
explanation: This abstract supports peripheral demyelination in MLD, partially supporting sulfatide storage as the upstream driver through the ARSA-deficiency mechanism.
- target: Progressive Neurodegeneration
description: >
Sulfatide storage initiates the MLD disease cascade that includes broader
neurodegeneration of the central and peripheral nervous systems.
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >
leading to deficient enzyme activity and subsequent accumulation of
sulfatides. MLD is characterized by demyelination and neurodegeneration
of the central and peripheral nervous system
explanation: >
This review places sulfatide accumulation upstream in MLD and identifies
neurodegeneration as part of the resulting nervous-system disease
process; the specific intermediate mechanisms are not fully specified.
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is a rare autosomal recessive lysosomal storage disorder caused by disease-causing variants in the gene coding for arylsulfatase A, leading to deficient enzyme activity and subsequent accumulation of sulfatides."
explanation: This review directly identifies sulfatide accumulation as the key storage abnormality in MLD.
- name: Central Nervous System Demyelination
conforms_to: "cns_myelin_failure#Deficient or Unstable CNS Myelin Sheath"
description: >
MLD causes progressive demyelination within the central nervous system,
driving cognitive and developmental decline.
cell_types:
- preferred_term: oligodendrocyte
term:
id: CL:0000128
label: oligodendrocyte
biological_processes:
- preferred_term: central nervous system myelination
modifier: DYSREGULATED
term:
id: GO:0022010
label: central nervous system myelination
downstream:
- target: Cognitive Impairment
description: Progressive CNS demyelination contributes to worsening cognitive dysfunction.
causal_link_type: DIRECT
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "MLD is characterized by demyelination and neurodegeneration of the central and peripheral nervous system, manifesting as progressive motor and cognitive defects in affected individuals."
explanation: This review directly links demyelination and neurodegeneration to progressive cognitive defects.
- target: Developmental Regression
description: Early-onset demyelinating disease leads to loss of acquired motor abilities in childhood forms.
causal_link_type: DIRECT
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The typical clinical course of patients with the late infantile form includes a regression in motor skills with progression to dysphagia, seizures, hypotonia and death."
explanation: This abstract links the late-infantile demyelinating disease course to regression of previously acquired motor skills.
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "MLD is characterized by demyelination and neurodegeneration of the central and peripheral nervous system, manifesting as progressive motor and cognitive defects in affected individuals."
explanation: This review identifies CNS demyelination as a central mechanism driving cognitive and motor dysfunction in MLD.
- name: Demyelinating Polyneuropathy
description: >
MLD also causes demyelinating disease in the peripheral nervous system,
producing a clinically important polyneuropathy burden.
cell_types:
- preferred_term: Schwann cell
term:
id: CL:0002573
label: Schwann cell
biological_processes:
- preferred_term: peripheral nervous system myelination
modifier: DYSREGULATED
term:
id: GO:0022011
label: myelination in peripheral nervous system
downstream:
- target: Peripheral Neuropathy
description: Peripheral nerve demyelination produces the polyneuropathy phenotype seen in MLD.
causal_link_type: DIRECT
evidence:
- reference: PMID:38564053
reference_title: "Progressive demyelinating polyneuropathy after hematopoietic cell transplantation in metachromatic leukodystrophy: a case series."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is a neuro-metabolic disorder due to arylsulfatase A deficiency, causing demyelination of the central and peripheral nervous system."
explanation: This abstract directly supports peripheral demyelination as an upstream mechanism for neuropathic disease in MLD.
evidence:
- reference: PMID:38564053
reference_title: "Progressive demyelinating polyneuropathy after hematopoietic cell transplantation in metachromatic leukodystrophy: a case series."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "This case series, however, illustrates the occurrence of severely progressive polyneuropathy shortly after HCT in two patients with late-infantile, one with late-juvenile, and one with adult MLD, leading to the inability to walk or sit without support."
explanation: This case series directly supports progressive polyneuropathy as a major peripheral nervous system manifestation of MLD.
- name: Progressive Neurodegeneration
description: >
Alongside demyelination, MLD includes a broader neurodegenerative process
that contributes to progressive neurologic disability.
downstream:
- target: Dysphagia
description: Progressive neurologic deterioration leads to bulbar dysfunction and dysphagia.
causal_link_type: DIRECT
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The typical clinical course of patients with the late infantile form includes a regression in motor skills with progression to dysphagia, seizures, hypotonia and death."
explanation: This abstract directly supports dysphagia as a downstream outcome of progressive late-infantile neurodegeneration.
- target: Seizures
description: Ongoing neurodegeneration contributes to seizures in early-onset MLD.
causal_link_type: DIRECT
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The typical clinical course of patients with the late infantile form includes a regression in motor skills with progression to dysphagia, seizures, hypotonia and death."
explanation: This abstract directly supports seizures as a downstream neurologic consequence of progressive late-infantile disease.
- target: Hypotonia
description: Progressive late-infantile neurologic deterioration includes hypotonia.
causal_link_type: DIRECT
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The typical clinical course of patients with the late infantile form includes a regression in motor skills with progression to dysphagia, seizures, hypotonia and death."
explanation: This abstract directly lists hypotonia as part of the progressive late-infantile MLD course.
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "MLD is characterized by demyelination and neurodegeneration of the central and peripheral nervous system, manifesting as progressive motor and cognitive defects in affected individuals."
explanation: This review explicitly identifies neurodegeneration as part of the core pathophysiology of MLD.
phenotypes:
- name: Cognitive Impairment
category: Neurologic
description: Progressive cognitive decline is a major clinical manifestation of MLD.
phenotype_term:
preferred_term: Cognitive impairment
term:
id: HP:0100543
label: Cognitive impairment
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "MLD is characterized by demyelination and neurodegeneration of the central and peripheral nervous system, manifesting as progressive motor and cognitive defects in affected individuals."
explanation: This review directly identifies progressive cognitive defects as a major clinical manifestation of MLD.
- name: Developmental Regression
category: Neurologic
description: Motor skill regression is typical of early-onset MLD.
subtype: Late-Infantile MLD
phenotype_term:
preferred_term: Developmental regression
term:
id: HP:0002376
label: Developmental regression
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The typical clinical course of patients with the late infantile form includes a regression in motor skills with progression to dysphagia, seizures, hypotonia and death."
explanation: This abstract directly supports developmental regression through loss of motor skills in late-infantile MLD.
- name: Dysphagia
category: Neurologic
description: Bulbar dysfunction with dysphagia develops as late-infantile MLD progresses.
subtype: Late-Infantile MLD
phenotype_term:
preferred_term: Dysphagia
term:
id: HP:0002015
label: Dysphagia
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The typical clinical course of patients with the late infantile form includes a regression in motor skills with progression to dysphagia, seizures, hypotonia and death."
explanation: This abstract directly lists dysphagia in the progression of late-infantile MLD.
- name: Seizures
category: Neurologic
description: Seizures occur in the progressive late-infantile disease course.
subtype: Late-Infantile MLD
phenotype_term:
preferred_term: Seizure
term:
id: HP:0001250
label: Seizure
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The typical clinical course of patients with the late infantile form includes a regression in motor skills with progression to dysphagia, seizures, hypotonia and death."
explanation: This abstract directly identifies seizures as part of the late-infantile MLD course.
- name: Hypotonia
category: Neurologic
description: Hypotonia develops during progression of late-infantile MLD.
subtype: Late-Infantile MLD
phenotype_term:
preferred_term: Hypotonia
term:
id: HP:0001252
label: Hypotonia
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The typical clinical course of patients with the late infantile form includes a regression in motor skills with progression to dysphagia, seizures, hypotonia and death."
explanation: This abstract directly lists hypotonia in the typical late-infantile MLD course.
- name: Peripheral Neuropathy
category: Neurologic
description: Progressive demyelinating polyneuropathy contributes substantially to disability in MLD.
phenotype_term:
preferred_term: Peripheral neuropathy
term:
id: HP:0009830
label: Peripheral neuropathy
evidence:
- reference: PMID:38564053
reference_title: "Progressive demyelinating polyneuropathy after hematopoietic cell transplantation in metachromatic leukodystrophy: a case series."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "This case series, however, illustrates the occurrence of severely progressive polyneuropathy shortly after HCT in two patients with late-infantile, one with late-juvenile, and one with adult MLD, leading to the inability to walk or sit without support."
explanation: This case series directly supports progressive polyneuropathy as a clinically important phenotype in MLD.
biochemical:
- name: Reduced arylsulfatase A activity
presence: DECREASED
context: >
Low ARSA activity is the proximal enzyme readout of the lysosomal sulfatide
catabolic defect, but interpretation requires care because pseudodeficiency
alleles and assay conditions can complicate isolated enzyme results.
readouts:
- target: Arylsulfatase A Deficiency
relationship: READOUT_OF
direction: NEGATIVE
endpoint_context: DIAGNOSTIC
interpretation: Reduced ARSA enzyme activity reports the proximal enzyme deficiency that initiates MLD.
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Measurement of arylsulfatase A in that laboratory showed a partial decrease in arylsulfatase A activity measured under typical conditions"
explanation: The case report documents reduced ARSA activity as a diagnostic biochemical finding while emphasizing assay caveats.
- name: Sulfatide storage burden
presence: INCREASED
context: >
Sulfatide storage is the primary chemical storage abnormality downstream of
ARSA deficiency.
biomarker_term:
preferred_term: sulfatide
term:
id: CHEBI:18318
label: galactosylceramide sulfate
readouts:
- target: Sulfatide Accumulation
relationship: READOUT_OF
direction: POSITIVE
endpoint_context: DIAGNOSTIC
interpretation: Increased sulfatide burden reports the core lysosomal storage lesion in MLD.
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is a rare autosomal recessive lysosomal storage disorder caused by disease-causing variants in the gene coding for arylsulfatase A, leading to deficient enzyme activity and subsequent accumulation of sulfatides."
explanation: This review supports sulfatide accumulation as the central biochemical storage abnormality in MLD.
- name: Urinary sulfatide excretion
presence: INCREASED
context: >
Urine sulfatide testing confirms MLD by directly detecting excreted storage
lipid, including cases in which ARSA enzyme screening is equivocal.
biomarker_term:
preferred_term: sulfatide
term:
id: CHEBI:18318
label: galactosylceramide sulfate
readouts:
- target: Sulfatide Accumulation
relationship: READOUT_OF
direction: POSITIVE
endpoint_context: DIAGNOSTIC
interpretation: Increased urinary sulfatide excretion is a diagnostic readout of the sulfatide storage mechanism.
evidence:
- reference: PMID:30828547
reference_title: "A closer look at ARSA activity in a patient with metachromatic leukodystrophy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The excretion of sulfatides in the urine is a definitive test to confirm the diagnosis of MLD, whether caused by defects in ARSA or saposin B."
explanation: This report identifies urinary sulfatide excretion as a definitive diagnostic biochemical readout for MLD.
genetic:
- name: ARSA
gene_term:
preferred_term: ARSA
term:
id: hgnc:713
label: ARSA
association: Pathogenic Mutations
relationship_type: CAUSATIVE
variant_origin: GERMLINE
presence: Positive
notes: >
MLD is caused by pathogenic variants affecting arylsulfatase A and resulting
in deficient enzymatic activity. ARSA is the more common of the two MLD genes;
the rarer cofactor route is curated separately as PSAP below.
inheritance:
- name: Autosomal Recessive
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Metachromatic leukodystrophy (MLD) is a rare autosomal recessive lysosomal storage disorder caused by disease-causing variants in the gene coding for arylsulfatase A, leading to deficient enzyme activity and subsequent accumulation of sulfatides."
explanation: This review directly supports ARSA pathogenic variants as the primary genetic cause of MLD and confirms autosomal recessive inheritance.
- reference: CGGV:assertion_a8d351d5-5158-4cc2-b4dd-d3179b53e2a4-2023-06-15T160000.000Z
reference_title: "ARSA / metachromatic leukodystrophy (Definitive)"
supports: SUPPORT
evidence_source: OTHER
snippet: "ARSA | HGNC:713 | metachromatic leukodystrophy | MONDO:0018868 | AR | Definitive"
explanation: ClinGen classifies the ARSA-metachromatic leukodystrophy gene-disease relationship as definitive with autosomal recessive inheritance.
- name: PSAP
gene_term:
preferred_term: PSAP
term:
id: hgnc:9498
label: PSAP
association: Pathogenic Mutations
relationship_type: CAUSATIVE
variant_origin: GERMLINE
presence: Positive
subtype: Saposin B-Deficient MLD
notes: >-
PSAP is not a second arylsulfatase A. It encodes prosaposin, the precursor of
saposins A-D; only variants affecting the saposin B domain give MLD, while
other domains of the same gene give saposin A-deficient Krabbe disease,
saposin C-deficient Gaucher disease, or combined prosaposin deficiency. Those
three are separate diseases and are deliberately not curated in this entry.
inheritance:
- name: Autosomal Recessive
evidence:
- reference: CGGV:assertion_4e24c4e4-a97d-4d08-abd9-e190fb001b9d-2023-07-20T160000.000Z
reference_title: "PSAP / metachromatic leukodystrophy due to saposin B deficiency (Definitive)"
supports: SUPPORT
evidence_source: OTHER
snippet: "PSAP | HGNC:9498 | metachromatic leukodystrophy due to saposin B deficiency | MONDO:0009590 | AR | Definitive"
explanation: >-
ClinGen classifies the PSAP-saposin B MLD gene-disease relationship as
Definitive with autosomal recessive inheritance.
- reference: CGGV:assertion_4e24c4e4-a97d-4d08-abd9-e190fb001b9d-2023-07-20T160000.000Z
reference_title: "PSAP / metachromatic leukodystrophy due to saposin B deficiency (Definitive)"
supports: SUPPORT
evidence_source: OTHER
snippet: "Because the location and type of different variants within PSAP determines which specific saposin is impacted, PSAP will be curated separately for four different conditions"
explanation: >-
Supports restricting this entry's PSAP claim to the saposin B domain rather
than to prosaposin deficiency generally.
- reference: PMID:10682309
reference_title: "A non-glycosylated and functionally deficient mutant (N215H) of the sphingolipid activator protein B (SAP-B) in a novel case of metachromatic leukodystrophy (MLD)."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "So far, four different point mutations have been identified on the SAP-B domain of the SAP-precursor gene."
explanation: >-
Locates the MLD-causing lesions in the saposin B domain of the prosaposin
(SAP-precursor) gene, which is the claim this genetic entry makes.
- reference: PMID:31319425
reference_title: "Saposin B-Deficient Metachromatic Leukodystrophy Mimicking Acute Flaccid Paralysis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Leukodystrophy gene panel revealed a homozygous pathogenic deletion (Lys227del variant) in prosaposin (PSAP) gene. Hence, a final diagnosis of saposin B-deficient MLD was established."
explanation: >-
A human case in which a biallelic PSAP variant established the saposin
B-deficient MLD diagnosis.
treatments:
- name: Hematopoietic Stem Cell Transplantation
description: >
Allogeneic HSCT is most useful before disease onset or in very early disease
stages.
therapeutic_modality: CELL_THERAPY
treatment_term:
preferred_term: hematopoietic stem cell transplantation
term:
id: NCIT:C15431
label: Hematopoietic Cell Transplantation
evidence:
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Both hematopoietic stem cell transplantation and hematopoietic stem cell gene therapy are most effective when administered before disease onset."
explanation: This review directly supports HSCT as a disease-modifying therapy when delivered presymptomatically.
target_mechanisms:
- target: Arylsulfatase A Deficiency
treatment_effect: MODULATES
description: >-
Allogeneic HSCT reconstitutes the myeloid compartment with donor-derived
macrophages and microglia that express functional ARSA, providing enzyme
cross-correction to neighboring cells and partially restoring
arylsulfatase A activity in the CNS.
- name: Atidarsagene Autotemcel
description: >
Autologous hematopoietic stem cell gene therapy using arsa-cel preserves
motor and cognitive development in selected early-onset patients.
therapeutic_modality: GENE_THERAPY
treatment_term:
preferred_term: gene therapy
term:
id: NCIT:C15238
label: Gene Therapy
target_mechanisms:
- target: Central Nervous System Demyelination
treatment_effect: MODULATES
description: Arsa-cel slows demyelination and brain atrophy in treated early-onset MLD patients.
evidence:
- reference: PMID:35065785
reference_title: "Lentiviral haematopoietic stem-cell gene therapy for early-onset metachromatic leukodystrophy: long-term results from a non-randomised, open-label, phase 1/2 trial and expanded access."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Treatment with arsa-cel resulted in sustained, clinically relevant benefits in children with early-onset MLD by preserving cognitive function and motor development in most patients, and slowing demyelination and brain atrophy."
explanation: The clinical trial abstract directly supports an effect of arsa-cel on demyelination progression.
target_phenotypes:
- preferred_term: Cognitive impairment
term:
id: HP:0100543
label: Cognitive impairment
- preferred_term: Developmental regression
term:
id: HP:0002376
label: Developmental regression
evidence:
- reference: PMID:35065785
reference_title: "Lentiviral haematopoietic stem-cell gene therapy for early-onset metachromatic leukodystrophy: long-term results from a non-randomised, open-label, phase 1/2 trial and expanded access."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Treatment with arsa-cel resulted in sustained, clinically relevant benefits in children with early-onset MLD by preserving cognitive function and motor development in most patients, and slowing demyelination and brain atrophy."
explanation: The phase 1/2 and expanded-access study supports arsa-cel as a disease-modifying therapy for early-onset MLD.
- reference: PMID:40577679
reference_title: "Metachromatic Leukodystrophy: New Therapy Advancements and Emerging Research Directions."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Research advancements have enabled improved understanding of the effects of allogeneic hematopoietic stem cell transplantation and the development of novel therapeutic approaches, including hematopoietic stem cell gene therapy, which is now authorized in the EU, United Kingdom, and United States as treatment for selected patients with early-onset forms of MLD."
explanation: This review confirms regulatory authorization and clinical use of hematopoietic stem cell gene therapy for selected early-onset MLD.
datasets:
- accession: geo:GSE23350
title: Gene expression profile of patients affected by Metachromatic Leukodystrophy (MLD)
description: The genome-wide analysis of T lympocytes from 24 MLD patients and a corresponding number of matched controls reveals a list of differentially expressed genes that can be used to build classifiers that correctly classify not only patients and controls with high sensitivity and specificity, but also MLD patients into early- and late-onset clinical classes.
organism:
preferred_term: human
term:
id: NCBITaxon:9606
label: Homo sapiens
data_type: MICROARRAY
sample_count: 48
publication: PMID:24242821
notes: Identified by GEO DataSets index search for Metachromatic Leukodystrophy (scripts/discover_datasets.py); accession and metadata verified against NCBI E-utilities on 2026-08-01. Title, sample count, and organism are GEO's own values.
- accession: geo:GSE299162
title: AAV-mediated ARSA replacement for the treatment of Metachromatic Leukodystrophy
description: Metachromatic leukodystrophy (MLD) is an autosomal recessive neurodegenerative disorder caused by mutations in the arylsulfatase A (ARSA) gene, resulting in lower sulfatase activity and the toxic accumulation of sulfatides in the central and peripheral nervous system. Children account for 70% of cases and become progressively disabled with death occurring within 10 years of disease onset. Gene therapy approaches to restore ARSA expression via adeno- associated viral vectors (AAV) have been promising but hampered by limited brain biodistribution.
organism:
preferred_term: mouse
term:
id: NCBITaxon:10090
label: Mus musculus
data_type: BULK_RNA_SEQ
sample_count: 8
publication: PMID:40536808
notes: Identified by GEO DataSets index search for Metachromatic Leukodystrophy (scripts/discover_datasets.py); accession and metadata verified against NCBI E-utilities on 2026-08-01. Title, sample count, and organism are GEO's own values.
references:
- reference: PMID:20301309
title: Arylsulfatase A Deficiency.
tags:
- GeneReviews
findings: []
Deep research results are used as seeds for research; they do not undergo the same validation as the main records and may contain errors. How we use deep research.
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