Mesomelia-synostoses syndrome is a rare autosomal dominant disorder combining mesomelic limb shortening with acral synostoses and multiple congenital malformations. It is a contiguous-gene microdeletion syndrome: every reported patient carries an interstitial 8q13 deletion of 582 to 738 kb that removes exactly two genes, SULF1 and SLCO5A1. SULF1 encodes heparan sulfate 6-O-endosulfatase 1, which edits the sulfation pattern of heparan sulfate and so tunes the availability of the growth factors that pattern the developing skeleton; it is most highly transcribed in human osteoblasts and cartilage, which is why it is the better candidate of the two. SLCO5A1 is an orphan organic anion transporter expressed in brain and heart with no known function. Because the two genes are always co-deleted, the contribution of each has not been separated.
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Conditions with similar clinical presentations that must be differentiated from Mesomelia-Synostoses Syndrome:
name: Mesomelia-Synostoses Syndrome
synonyms:
- mesomelic dysplasia with acral synostoses, Verloes-David-Pfeiffer type
- Verloes-David-Pfeiffer syndrome
- MSS
creation_date: "2026-08-27T00:00:00Z"
category: Mendelian
description: >-
Mesomelia-synostoses syndrome is a rare autosomal dominant disorder combining
mesomelic limb shortening with acral synostoses and multiple congenital
malformations. It is a contiguous-gene microdeletion syndrome: every reported
patient carries an interstitial 8q13 deletion of 582 to 738 kb that removes
exactly two genes, SULF1 and SLCO5A1. SULF1 encodes heparan sulfate
6-O-endosulfatase 1, which edits the sulfation pattern of heparan sulfate and
so tunes the availability of the growth factors that pattern the developing
skeleton; it is most highly transcribed in human osteoblasts and cartilage,
which is why it is the better candidate of the two. SLCO5A1 is an orphan
organic anion transporter expressed in brain and heart with no known function.
Because the two genes are always co-deleted, the contribution of each has not
been separated.
disease_term:
preferred_term: mesomelia-synostoses syndrome
term:
id: MONDO:0010881
label: mesomelia-synostoses syndrome
parents:
- Skeletal Dysplasia
- Mesomelic Dysplasia
- Contiguous gene deletion syndrome
notes: >-
Attribution. The ISDS row names both SULF1 and SLCO5A1, and this entry keeps
both rather than collapsing to SULF1. The defining study's own conclusion is
carefully hedged — SULF1 haploinsufficiency "contributes", and the authors
suggest that SULF1 plus SLCO5A1 haploinsufficiency, or a position effect on a
neighbouring gene, "could be necessary". No patient with a single-gene lesion
in either gene has been reported, so the two-gene requirement is untested
rather than established, and the mechanism section says so.
classifications:
harrisons_chapter:
- classification_value: GENETICS_ENVIRONMENT_DISEASE
notes: >-
A Mendelian contiguous-gene deletion syndrome; tagged on the genetics
axis.
isds_skeletal_category:
- classification_value: mesomelic_and_rhizomesomelic_dysplasias
notes: >-
ISDS Nosology of Genetic Skeletal Disorders, 2023 revision (Unger et al.,
PMID:36779427), group 15 "Mesomelic and rhizo-mesomelic dysplasias", row
NOS 15-0140, listed as "Mesomelic dysplasia with acral synostoses
(Verloes-David-Pfeiffer type)" (MIM 600383, AD) with genes SULF1 and
SLCO5A1, and the row's own comment describing it as a microdeletion
syndrome involving two adjacent genes. The 2019 revision (Mortier et al.,
PMID:31633310) numbered the same group 17.
prevalence:
- population: Worldwide
measure_type: CASES_IN_LITERATURE
prevalence_class: ULTRA_RARE
notes: >-
Five patients in four unrelated families at the time the molecular cause was
identified. No denominator-based estimate exists.
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
So far, five patients in four unrelated families have been reported
worldwide with MMS.
explanation: >-
Gives the cumulative case count, the basis for the ULTRA_RARE band.
inheritance:
- name: Autosomal dominant
inheritance_term:
preferred_term: Autosomal dominant inheritance
term:
id: HP:0000006
label: Autosomal dominant inheritance
description: >-
Autosomal dominant, from heterozygous deletion of the 8q13 interval. The
deletions are non-recurrent — breakpoint sequencing in two families showed
they do not arise from low-copy-repeat-mediated recombination — so each is a
distinct event rather than a common rearrangement hotspot product.
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Mesomelia-synostoses syndrome (MSS) or mesomelic dysplasia with acral
synostoses Verloes-David-Pfeiffer type is a rare autosomal-dominant
disorder characterized by mesomelic limb shortening, acral synostoses, and
multiple congenital malformations.
explanation: >-
States the inheritance mode together with the defining features.
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Breakpoint sequence analyses performed in two families showed nonrecurrent
deletions.
explanation: >-
Supports the non-recurrent nature of the deletions.
pathophysiology:
- name: 8q13 Contiguous Deletion of SULF1 and SLCO5A1
biological_scale: MOLECULAR
genes:
- preferred_term: SULF1
term:
id: hgnc:20391
label: SULF1
- preferred_term: SLCO5A1
term:
id: hgnc:19046
label: SLCO5A1
genetic_context:
genes:
- preferred_term: SULF1
term:
id: hgnc:20391
label: SULF1
- preferred_term: SLCO5A1
term:
id: hgnc:19046
label: SLCO5A1
allele_type: interstitial 8q13 deletion of 582-738 kb
zygosity: HETEROZYGOUS
functional_impact_category: LOSS_OF_FUNCTION
description: >-
Array CGH found an interstitial 8q13 deletion in every patient. The
deletions differ in size but converge on the same two-gene content, which is
what identified the interval. Because no patient has been reported with a
lesion in only one of the two genes, the deletion is curated here as the
unit of causation, with the relative contributions of the two genes left
open.
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The deletions vary from 582 Kb to 738 Kb in size, but invariably encompass
only two genes: SULF1, encoding the heparan sulfate 6-O-endosulfatase 1,
and SLCO5A1, encoding the solute carrier organic anion transporter family
member 5A1.
explanation: >-
Establishes the deletion interval and its exact two-gene content.
downstream:
- target: Loss of Heparan Sulfate 6-O-Endosulfatase Activity
causal_link_type: DIRECT
description: >-
SULF1 haploinsufficiency follows directly from the deletion.
- name: Loss of Heparan Sulfate 6-O-Endosulfatase Activity
biological_scale: MOLECULAR
description: >-
SULF1 removes 6-O-sulfate groups from heparan sulfate proteoglycans at the
cell surface, and that sulfation pattern determines how tightly heparan
sulfate binds and sequesters the growth factors — Wnt, FGF, BMP, hedgehog —
that pattern the skeleton. Losing an endosulfatase therefore changes growth
factor availability rather than any structural protein. The expression data
point the same way: SULF1 transcripts are highest in human osteoblasts and
cartilage, while its co-deleted neighbour is a brain- and heart-expressed
transporter of unknown function.
molecular_functions:
- preferred_term: heparan sulfate 6-O-endosulfatase activity
modifier: DECREASED
term:
id: GO:0008201
label: heparin binding
biological_processes:
- preferred_term: glycosaminoglycan metabolic process
modifier: DECREASED
term:
id: GO:0030203
label: glycosaminoglycan metabolic process
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
SULF1 acts as a regulator of numerous growth factors in skeletal embryonic
development whereas the function of SLCO5A1 is yet unknown.
explanation: >-
Establishes SULF1's role as a growth-factor regulator in skeletal
development and the absence of any known SLCO5A1 function.
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Real-time quantitative RT-PCR analysis showed the highest levels of SULF1
transcripts in human osteoblasts and cartilage whereas SLCO5A1 was highly
expressed in human fetal and adult brain and heart.
explanation: >-
The tissue-expression argument that makes SULF1 the better candidate of
the two co-deleted genes.
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Our results strongly suggest that haploinsufficiency of SULF1 contributes
to this mesomelic chondrodysplasia, highlighting the critical role of
endosulfatase in human skeletal development.
explanation: >-
The authors' own conclusion, stated as "strongly suggest" and
"contributes" rather than as sufficiency — which is why this node does not
claim SULF1 loss alone explains the disorder.
downstream:
- target: Mesomelic Shortening with Acral Synostoses
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: >-
Which growth-factor pathway mediates the skeletal phenotype has not been
identified.
- name: Mesomelic Shortening with Acral Synostoses
biological_scale: ORGANISM
description: >-
The clinical endpoint: mesomelic limb shortening together with acral
synostoses and additional congenital malformations. The pairing of mesomelia
with synostosis is the recognizable signature, and it is shared with the
HOXD-related Kantaputra type, which reaches the same combination by a
completely different route.
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
a rare autosomal-dominant disorder characterized by mesomelic limb
shortening, acral synostoses, and multiple congenital malformations
explanation: >-
Gives the defining clinical triad this node represents.
downstream:
- target: Mesomelic Limb Shortening
causal_link_type: DIRECT
description: >-
Loss of endosulfatase editing changes growth-factor availability in the
developing zeugopod.
- target: Acral Synostoses
causal_link_type: DIRECT
description: >-
Heparan sulfate sulfation state governs the growth-factor gradients that
separate adjacent skeletal elements, so losing that control is a plausible
route to failed segmentation. Which growth factor mediates it is not
established.
phenotypes:
- category: Skeletal
name: Mesomelic Limb Shortening
phenotype_term:
preferred_term: Mesomelia
term:
id: HP:0003027
label: Mesomelia
frequency: VERY_FREQUENT
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
a rare autosomal-dominant disorder characterized by mesomelic limb
shortening, acral synostoses, and multiple congenital malformations
explanation: >-
Mesomelic limb shortening is the first of the defining features.
- category: Skeletal
name: Acral Synostoses
description: >-
Fusions in the distal limb, the feature that pairs with mesomelia to give
the syndrome its name.
phenotype_term:
preferred_term: Synostosis of carpal bones
term:
id: HP:0005048
label: Synostosis of carpal bones
frequency: VERY_FREQUENT
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
a rare autosomal-dominant disorder characterized by mesomelic limb
shortening, acral synostoses, and multiple congenital malformations
explanation: >-
Establishes acral synostoses as a defining feature. The abstract does not
say which bones fuse, so the HP binding to carpal synostosis is the
closest available term rather than a stated finding, and the evidence is
PARTIAL.
genetic:
- name: SULF1
gene_term:
preferred_term: SULF1
term:
id: hgnc:20391
label: SULF1
relationship_type: CAUSATIVE
notes: >-
Heparan sulfate 6-O-endosulfatase 1, at 8q13. Deleted in every reported
patient and the better candidate of the two co-deleted genes on both
functional and expression grounds. No patient with an isolated SULF1 lesion
has been reported, so its sufficiency is untested.
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Our results strongly suggest that haploinsufficiency of SULF1 contributes
to this mesomelic chondrodysplasia, highlighting the critical role of
endosulfatase in human skeletal development.
explanation: >-
The authors' attribution of the skeletal phenotype primarily to SULF1
haploinsufficiency.
- name: SLCO5A1
gene_term:
preferred_term: SLCO5A1
term:
id: hgnc:19046
label: SLCO5A1
relationship_type: COOPERATING
notes: >-
Solute carrier organic anion transporter family member 5A1, immediately
adjacent to SULF1 and co-deleted in every patient. Its function is unknown
and its expression is brain- and heart-predominant rather than skeletal, so
it is recorded as a cooperating rather than a primary locus — the defining
study proposes that combined SULF1 and SLCO5A1 haploinsufficiency, or a
position effect on a neighbouring gene, may be what is required.
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
we suggest that haploinsufficiency of SULF1 combined with
haploinsufficiency of SLCO5A1 (or the altered expression of a neighboring
gene through position effect) could be necessary in the pathogenesis of
MSS
explanation: >-
The proposal that SLCO5A1 co-haploinsufficiency may be required, stated as
a suggestion and with an explicit alternative, which is why this is
COOPERATING and PARTIAL.
diagnosis:
- name: Copy-Number Analysis of 8q13
description: >-
Confirmed by demonstrating an interstitial 8q13 deletion encompassing SULF1
and SLCO5A1. Array CGH is the assay that identified the interval and remains
the appropriate first-line test; the deletions are non-recurrent, so there
is no single breakpoint-specific assay to use instead.
diagnosis_term:
preferred_term: genetic testing
term:
id: NCIT:C15709
label: Genetic Testing
evidence:
- reference: PMID:20602915
reference_title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
By using whole-genome oligonucleotide array CGH, we have identified an
interstitial deletion at 8q13 in all patients.
explanation: >-
Names the assay and its yield in the defining series.
differential_diagnoses:
- name: Mesomelic dysplasia, Kantaputra type
description: >-
The other group-15 disorder that pairs mesomelia with synostoses. It is
reached by an entirely different mechanism — regulatory reallocation at the
HOXD locus, with intact coding sequence — whereas this syndrome is a
straightforward contiguous-gene deletion. Copy-number analysis distinguishes
them by locus.
- name: Langer mesomelic dysplasia
description: >-
Biallelic SHOX deficiency; more severe limb shortening and no acral
synostoses or additional congenital malformations.
discussions:
- discussion_id: mss_two_gene_requirement
kind: KNOWLEDGE_GAP
prompt: >-
Is SULF1 haploinsufficiency alone sufficient to cause mesomelia-synostoses
syndrome, or is co-deletion of SLCO5A1 (or a position effect) genuinely
required?
attaches_to:
- pathophysiology#8q13 Contiguous Deletion of SULF1 and SLCO5A1
rationale: >-
Every reported patient has both genes deleted, so the two-gene hypothesis
has never been tested against the one-gene alternative in humans. The
question decides whether an isolated SULF1 loss-of-function variant found
incidentally should be reported as causal for this syndrome — a question a
diagnostic laboratory will eventually face — and it is answerable either by
a patient with a smaller deletion or by a single-gene mouse model.
references:
- reference: PMID:20602915
title: "Mesomelia-synostoses syndrome results from deletion of SULF1 and SLCO5A1 genes at 8q13."
- reference: PMID:36779427
title: "Nosology of genetic skeletal disorders: 2023 revision."