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1
Inheritance
3
Pathophys.
9
Phenotypes
4
Pathograph
1
Genes
3
Medical Actions
4
Trials
1
References
1
Deep Research
👪

Inheritance

1
Autosomal recessive inheritance HP:0000007
LCA10 follows autosomal recessive inheritance, caused by biallelic pathogenic variants in CEP290.
Autosomal recessive inheritance
Show evidence (1 reference)
PMID:16909394 SUPPORT Human Clinical
"This mutation was detected in 16 (21%) of 76 unrelated patients with LCA, either homozygously or in combination with a second deleterious mutation on the other allele."
Homozygous or compound-heterozygous CEP290 genotypes in affected patients establish autosomal recessive inheritance.

Pathophysiology

3
CEP290 Transition Zone and Connecting Cilium Gating Failure
CEP290 is a core component of the ciliary transition zone, which at the base of the photoreceptor connecting cilium forms a selective diffusion barrier ("ciliary gate") controlling which proteins enter the outer segment. Biallelic loss-of-function or hypomorphic CEP290 variants disrupt assembly of the transition-zone Y-links and the MKS/NPHP module, compromising the gate.
photoreceptor cell CL:0000210
cilium assembly GO:0060271 ↓ DECREASED protein localization to ciliary transition zone GO:1904491 ↓ DECREASED
Show evidence (2 references)
PMID:20819941 SUPPORT Model Organism
"CEP290 is located in the flagellar transition zone in close association with the prominent microtubule-membrane links there."
Immuno-electron microscopy in a Chlamydomonas CEP290-null mutant localizes CEP290 to the ciliary transition zone, the structural basis of the ciliary gate at the photoreceptor connecting cilium.
PMID:20819941 SUPPORT Model Organism
"CEP290 is required to form microtubule-membrane linkers that tether the flagellar membrane to the transition zone microtubules, and is essential for controlling flagellar protein composition."
CEP290 loss disrupts transition-zone microtubule-membrane linkers and the control of ciliary protein composition, i.e. the gating function.
Impaired Outer Segment Protein Trafficking and Opsin Mislocalization
With a defective transition-zone gate, intraflagellar transport of phototransduction machinery into the outer segment fails. Opsin and other outer-segment proteins are mislocalized to the inner segment and cell body rather than being concentrated in the outer-segment discs, depriving photoreceptors of functional phototransduction and triggering cell stress.
photoreceptor cell CL:0000210
intraciliary transport GO:0042073 ↓ DECREASED protein localization to cilium GO:0061512 ↓ DECREASED
Show evidence (2 references)
PMID:20819941 SUPPORT Model Organism
"Defects in the localization of several ciliary proteins were found in photoreceptors and olfactory sensory neurons of the rd16 mouse, which harbors a hypomorphic in-frame deletion in Cep290 and displays early-onset retinal degeneration and anosmia"
The hypomorphic Cep290 rd16 mouse shows mislocalization of ciliary proteins in photoreceptors with early-onset retinal degeneration, directly modeling the trafficking-failure mechanism of LCA10.
PMID:20819941 SUPPORT Model Organism
"alteration of the normal balance of intraflagellar transport (IFT) complexes A and B and abnormal levels of the membrane-associated proteins BBS4 and PKD2"
CEP290 loss disrupts the balance of intraflagellar transport machinery, the transport system that delivers outer-segment cargo.
Photoreceptor Outer Segment Degeneration
The photoreceptor outer segment is a specialized non-motile sensory cilium that depends on connecting-cilium transport for its assembly and renewal. CEP290-driven trafficking failure impairs outer-segment morphogenesis and maintenance, producing severe congenital photoreceptor dysfunction with a non-recordable electroretinogram and progressive retinal degeneration. In CEP290-LCA the foveal photoreceptor layer is relatively preserved on OCT early in life, defining a therapeutic window.
photoreceptor cell CL:0000210 retinal cone cell CL:0000573
photoreceptor cell maintenance GO:0045494 ↓ DECREASED
Show evidence (3 references)
PMID:30559420 SUPPORT Human Clinical
"Photoreceptor ciliopathies constitute the most common molecular mechanism of the childhood blindness Leber congenital amaurosis."
Frames LCA, including CEP290-LCA, as a photoreceptor ciliopathy in which ciliary dysfunction drives the photoreceptor failure underlying blindness.
PMID:20819941 SUPPORT Model Organism
"CEP290 mutations are a common cause of Leber congenital amaurosis (LCA; den Hollander et al., 2006; Sundaresan et al., 2009), in which blindness results from degeneration of the retina but other organ systems are often unaffected."
Confirms that in CEP290-LCA, blindness results specifically from retinal (photoreceptor) degeneration, typically without extra-retinal involvement.
PMID:28510626 SUPPORT Human Clinical
"OCT analyses indicated retained central photoreceptors with abnormal distal laminae."
In CEP290-LCA patients, central (foveal) photoreceptors are structurally retained despite functional loss, the structure-function dissociation that defines the therapeutic window for splice-correcting and gene-editing therapies.

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence and cross-linked metadata.
Pathograph: causal mechanism network for Leber Congenital Amaurosis 10 Interactive directed graph showing how pathophysiology mechanisms, phenotypes, genetic factors and variants, experimental models, environmental triggers, and treatments relate through causal and linked edges.

Phenotypes

9
Eye 6
Severe early-onset visual impairment Visual impairment HP:0000505
Onset: CONGENITAL
Show evidence (1 reference)
PMID:38709228 SUPPORT Human Clinical
"CEP290-associated inherited retinal degeneration causes severe early-onset vision loss due to pathogenic variants in CEP290."
Establishes severe early-onset vision loss as the defining clinical feature of CEP290-associated retinal degeneration (LCA10).
Nystagmus Nystagmus HP:0000639
Show evidence (1 reference)
PMID:28510626 PARTIAL Human Clinical
"OCI was abnormal in most patients."
Oculomotor control and instability (OCI) was abnormal in most CEP290-LCA patients, consistent with the nystagmus/oculomotor instability of early-onset severe retinal dystrophy (PARTIAL: OCI is a quantitative oculomotor measure, not a categorical nystagmus diagnosis).
Undetectable electroretinogram Undetectable electroretinogram HP:0000550
Hyperopia Hypermetropia HP:0000540
Photophobia Photophobia HP:0000613
Pigmentary retinopathy Pigmentary retinopathy HP:0000580
Other 3
Slow pupillary light response Slow pupillary light response HP:0030211
Show evidence (1 reference)
PMID:28510626 SUPPORT Human Clinical
"TPLR was nondetectable in the majority of patients, with responders demonstrating severe losses in light sensitivity."
Transient pupillary light reflex (TPLR) was nondetectable in most CEP290-LCA patients, directly supporting the sluggish/absent pupillary light response.
Oculodigital sign Eye poking HP:0001483
Cystoid macular changes Cystoid macular edema HP:0011505
🧬

Genetic Associations

1
CEP290 (Causative)
Gene: CEP290 hgnc:29021
Show evidence (3 references)
PMID:16909394 SUPPORT Human Clinical
"The defect is caused by an intronic mutation (c.2991+1655A-->G) that creates a strong splice-donor site and inserts a cryptic exon in the CEP290 messenger RNA."
Identifies the recurrent deep-intronic CEP290 c.2991+1655A>G variant and its cryptic-exon splicing mechanism, the molecular basis of LCA10.
PMID:16909394 SUPPORT Human Clinical
"CEP290 mutations therefore represent one of the most frequent causes of LCA identified so far."
Establishes CEP290 as one of the most frequent causes of Leber congenital amaurosis.
PMID:20690115 SUPPORT Other
"mutations cause a wide variety of distinct phenotypes, ranging from isolated blindness over Senior-Loken syndrome (SLS), nephronophthisis (NPHP)"
Documents the CEP290 allelic spectrum: hypomorphic alleles cause isolated blindness (LCA10), while more severe alleles cause syndromic ciliopathies. Evidence source OTHER (mutation-overview review).
💊

Medical Actions

3
Sepofarsen (QR-110) intravitreal antisense oligonucleotide
Action: Pharmacotherapy NCIT:C15986
Intravitreally delivered RNA antisense oligonucleotide designed to correct aberrant splicing caused by the CEP290 c.2991+1655A>G variant, restoring wild-type CEP290 mRNA and protein in photoreceptors. Early-phase studies (including durable single-dose efficacy in an exceptional responder) were encouraging, but the pivotal randomized, sham-controlled Phase 2/3 ILLUMINATE trial (NCT03913143) did not meet its primary endpoint of mean change in best-corrected visual acuity at month 12; clinical development continued with the Phase 3 HYPERION trial (NCT06891443). This benefit-risk uncertainty should be weighed alongside the dose-dependent cataract safety signal.
Mechanism Target:
RESTORES CEP290 Transition Zone and Connecting Cilium Gating Failure — Splice-correcting ASO restores wild-type CEP290 mRNA, repairing the transition-zone gating defect.
Show evidence (5 references)
PMID:30559420 SUPPORT Human Clinical
"Ten patients with Leber congenital amaurosis carrying the c.2991+1655A>G allele in the ciliopathy gene centrosomal protein 290 (CEP290) were treated"
First-in-human trial of the splice-correcting antisense oligonucleotide (sepofarsen/QR-110) targeting the CEP290 c.2991+1655A>G allele.
PMID:30559420 SUPPORT Human Clinical
"There were no serious adverse events, and vision improved at 3 months. The visual acuity of one exceptional responder improved from light perception to 20/400."
Demonstrates early efficacy of sepofarsen, including a marked responder, supporting splice correction as a disease-modifying approach.
PMID:35379979 SUPPORT Human Clinical
"Statistically significant improvements in visual acuity and retinal sensitivity were reported (post hoc analysis)."
Phase 1b/2 trial reports functional vision gains with sepofarsen.
+ 2 more references
EDIT-101 in vivo CRISPR-Cas9 gene editing
Action: gene therapy MAXO:0001001
Subretinally delivered AAV5 vector encoding Staphylococcus aureus Cas9 and guide RNAs that excise the intronic region containing the CEP290 c.2991+1655A>G variant, eliminating the cryptic splice site and restoring functional CEP290. Because CEP290 cDNA exceeds AAV packaging capacity, in vivo editing (rather than gene supplementation) is used.
Show evidence (2 references)
PMID:38709228 SUPPORT Human Clinical
"EDIT-101 is a clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein 9 (Cas9) gene-editing complex designed to treat inherited retinal degeneration caused by a specific damaging variant in intron 26 of CEP290 (IVS26 variant)."
Defines EDIT-101 as an in vivo CRISPR-Cas9 therapy targeting the CEP290 intron 26 (IVS26) c.2991+1655A>G variant.
PMID:38709228 SUPPORT Human Clinical
"Nine participants (64%) had a meaningful improvement from baseline in the best corrected visual acuity, the sensitivity to red light as measured with FST, or the score on the mobility test."
Phase 1-2 BRILLIANCE trial shows meaningful functional improvement in a majority of participants after in vivo CRISPR editing.
Low-vision supportive care
Action: supportive care MAXO:0000950
Visual rehabilitation, low-vision aids, and supportive management.
🔬

Clinical Trials

4
NCT03140969 PHASE_II COMPLETED
Open-label, multiple-dose, dose-escalation study evaluating intravitreal sepofarsen (QR-110) antisense oligonucleotide in LCA10 due to the CEP290 c.2991+1655A>G (p.Cys998X) variant.
Target Phenotypes: Severe visual impairment HP:0000505
Show evidence (1 reference)
clinicaltrials:NCT03140969 SUPPORT Human Clinical
"evaluate the safety and tolerability of QR-110 administered via intravitreal injection in subjects with LCA due to the CEP290 p.Cys998X mutation"
Registry record for the first-in-human sepofarsen trial in CEP290-LCA10.
NCT03872479 PHASE_II COMPLETED
Open-label, single-ascending-dose study (BRILLIANCE) evaluating subretinal EDIT-101 in vivo CRISPR-Cas9 gene editing in LCA10 caused by the CEP290 IVS26 c.2991+1655A>G variant.
Target Phenotypes: Severe visual impairment HP:0000505
Show evidence (1 reference)
clinicaltrials:NCT03872479 SUPPORT Human Clinical
"evaluate the safety, tolerability and efficacy of a single escalating doses of EDIT-101 administered via subretinal injection in participants with LCA10"
Registry record for the BRILLIANCE in vivo CRISPR-Cas9 gene-editing trial in CEP290-LCA10.
NCT03913143 PHASE_III COMPLETED
ILLUMINATE — the pivotal double-masked, randomized, sham-controlled, multiple-dose Phase 2/3 trial of intravitreal sepofarsen (QR-110) in LCA10 due to the CEP290 c.2991+1655A>G (p.Cys998X) variant. The trial did not meet its primary endpoint of mean change from baseline in best-corrected visual acuity at month 12, an important benefit-risk consideration for the sepofarsen program (no peer-reviewed PMID is available; outcome from the sponsor's public topline announcement, so it is captured here as descriptive context rather than as a citable evidence claim).
Target Phenotypes: Severe visual impairment HP:0000505
Show evidence (1 reference)
clinicaltrials:NCT03913143 PARTIAL Human Clinical
"evaluate the efficacy, safety, tolerability and systemic exposure of sepofarsen"
Registry record for the pivotal Phase 2/3 ILLUMINATE sepofarsen trial in CEP290-LCA10. Marked PARTIAL because the registry summary documents the trial design but not its reported primary-endpoint outcome.
NCT06891443 PHASE_III RECRUITING
HYPERION — a double-masked, randomized, placebo-controlled, paired-eye Phase 3 trial of sepofarsen in LCA10 due to the CEP290 c.2991+1655A>G (p.Cys998X) variant, representing continued clinical development of sepofarsen.
Target Phenotypes: Severe visual impairment HP:0000505
Show evidence (1 reference)
clinicaltrials:NCT06891443 SUPPORT Human Clinical
"placebo-controlled, paired-eye study"
Registry record for the HYPERION Phase 3 sepofarsen trial in CEP290-LCA10.
{ }

Source YAML

click to show
name: Leber Congenital Amaurosis 10
creation_date: "2026-06-26T00:00:00Z"
category: Mendelian
description: >-
  Leber congenital amaurosis 10 (LCA10) is a severe, early-onset autosomal
  recessive inherited retinal dystrophy caused by biallelic pathogenic variants
  in CEP290 (centrosomal protein 290 kDa), the most frequently mutated gene in
  Leber congenital amaurosis (accounting for ~15-25% of cases). CEP290 is a
  large centrosomal/ciliary protein that localizes to the photoreceptor
  connecting cilium and the ciliary transition zone, where it forms part of the
  gate that regulates selective protein trafficking into the outer segment. Loss
  of CEP290 function disrupts ciliary gating and intraflagellar transport,
  causing mislocalization of phototransduction proteins (e.g. opsin),
  outer-segment dysgenesis, and progressive photoreceptor degeneration. LCA10
  presents in the first year of life with profound visual impairment or
  blindness, nystagmus, sluggish or absent pupillary responses, and a severely
  reduced or non-detectable electroretinogram. A recurrent deep-intronic founder
  variant, c.2991+1655A>G, creates a strong cryptic splice site that inserts an
  aberrant pseudo-exon carrying a premature stop codon (p.Cys998*); because it is
  a hypomorphic splicing defect that still permits some correct splicing, it is
  amenable to antisense-oligonucleotide splice correction. Relative early
  preservation of foveal photoreceptor structure on optical coherence tomography
  in CEP290-LCA defines a therapeutic window that has driven precision-medicine
  programs including the antisense oligonucleotide sepofarsen (QR-110) and the
  in vivo CRISPR-Cas9 gene-editing therapy EDIT-101.
disease_term:
  preferred_term: Leber congenital amaurosis 10
  term:
    id: MONDO:0012723
    label: Leber congenital amaurosis 10
synonyms:
- CEP290-related Leber congenital amaurosis
- LCA10
- CEP290 Leber congenital amaurosis
parents:
- Ophthalmological Disease
- Retinal Dystrophy
- Inherited retinal dystrophy
- Ciliopathy

references:
- reference: PMID:30285347
  title: "Nonsyndromic Leber Congenital Amaurosis / Early-Onset Severe Retinal Dystrophy Overview"
  tags:
  - GeneReviews
  findings:
  - statement: >-
      This GeneReviews entry is a multi-gene nonsyndromic LCA/EOSRD overview rather
      than a CEP290/LCA10-specific chapter, and the available cached record is a
      generic purpose/scope abstract without quotable, disease-specific clinical,
      diagnostic, or management text. Disease-specific claims in this entry are
      therefore sourced from primary literature (den Hollander 2006, Coppieters
      2010, Cideciyan 2019/2021, Russell 2022, Pierce 2024) rather than from
      quotable GeneReviews snippets; the GeneReviews overview is retained as the
      tagged clinical baseline reference.
    supporting_text: "characteristics of nonsyndromic Leber congenital amaurosis"

inheritance:
- name: Autosomal recessive inheritance
  inheritance_term:
    preferred_term: Autosomal recessive inheritance
    term:
      id: HP:0000007
      label: Autosomal recessive inheritance
  description: >-
    LCA10 follows autosomal recessive inheritance, caused by biallelic
    pathogenic variants in CEP290.
  evidence:
  - reference: PMID:16909394
    reference_title: "Mutations in the CEP290 (NPHP6) gene are a frequent cause of Leber congenital amaurosis."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "This mutation was detected in 16 (21%) of 76 unrelated patients with LCA, either homozygously or in combination with a second deleterious mutation on the other allele."
    explanation: >-
      Homozygous or compound-heterozygous CEP290 genotypes in affected patients
      establish autosomal recessive inheritance.

pathophysiology:
- name: CEP290 Transition Zone and Connecting Cilium Gating Failure
  conforms_to: "ciliopathy_dysfunction#Basal Body and Transition Zone Dysfunction"
  description: >-
    CEP290 is a core component of the ciliary transition zone, which at the base
    of the photoreceptor connecting cilium forms a selective diffusion barrier
    ("ciliary gate") controlling which proteins enter the outer segment. Biallelic
    loss-of-function or hypomorphic CEP290 variants disrupt assembly of the
    transition-zone Y-links and the MKS/NPHP module, compromising the gate.
  cell_types:
  - preferred_term: photoreceptor cell
    term:
      id: CL:0000210
      label: photoreceptor cell
  biological_processes:
  - preferred_term: cilium assembly
    term:
      id: GO:0060271
      label: cilium assembly
    modifier: DECREASED
  - preferred_term: protein localization to ciliary transition zone
    term:
      id: GO:1904491
      label: protein localization to ciliary transition zone
    modifier: DECREASED
  evidence:
  - reference: PMID:20819941
    reference_title: "CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: "CEP290 is located in the flagellar transition zone in close association with the prominent microtubule-membrane links there."
    explanation: >-
      Immuno-electron microscopy in a Chlamydomonas CEP290-null mutant localizes
      CEP290 to the ciliary transition zone, the structural basis of the ciliary
      gate at the photoreceptor connecting cilium.
  - reference: PMID:20819941
    reference_title: "CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: "CEP290 is required to form microtubule-membrane linkers that tether the flagellar membrane to the transition zone microtubules, and is essential for controlling flagellar protein composition."
    explanation: >-
      CEP290 loss disrupts transition-zone microtubule-membrane linkers and the
      control of ciliary protein composition, i.e. the gating function.
  downstream:
  - target: Impaired Outer Segment Protein Trafficking and Opsin Mislocalization
    description: >-
      A defective ciliary gate fails to traffic phototransduction cargo,
      mislocalizing opsin and other outer-segment proteins.
    evidence:
    - reference: PMID:20819941
      reference_title: "CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content."
      supports: SUPPORT
      evidence_source: MODEL_ORGANISM
      snippet: "We propose that CEP290 is part of a complex that links the membrane to the microtubules in the transition zone and regulates entry of proteins into the ciliary compartment."
      explanation: >-
        Mechanistically links the transition-zone gating role of CEP290 to the
        regulation of protein entry into the cilium, i.e. the causal step from
        gate failure to impaired ciliary trafficking.

- name: Impaired Outer Segment Protein Trafficking and Opsin Mislocalization
  description: >-
    With a defective transition-zone gate, intraflagellar transport of
    phototransduction machinery into the outer segment fails. Opsin and other
    outer-segment proteins are mislocalized to the inner segment and cell body
    rather than being concentrated in the outer-segment discs, depriving
    photoreceptors of functional phototransduction and triggering cell stress.
  cell_types:
  - preferred_term: photoreceptor cell
    term:
      id: CL:0000210
      label: photoreceptor cell
  biological_processes:
  - preferred_term: intraciliary transport
    term:
      id: GO:0042073
      label: intraciliary transport
    modifier: DECREASED
  - preferred_term: protein localization to cilium
    term:
      id: GO:0061512
      label: protein localization to cilium
    modifier: DECREASED
  evidence:
  - reference: PMID:20819941
    reference_title: "CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: "Defects in the localization of several ciliary proteins were found in photoreceptors and olfactory sensory neurons of the rd16 mouse, which harbors a hypomorphic in-frame deletion in Cep290 and displays early-onset retinal degeneration and anosmia"
    explanation: >-
      The hypomorphic Cep290 rd16 mouse shows mislocalization of ciliary proteins
      in photoreceptors with early-onset retinal degeneration, directly modeling
      the trafficking-failure mechanism of LCA10.
  - reference: PMID:20819941
    reference_title: "CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: "alteration of the normal balance of intraflagellar transport (IFT) complexes A and B and abnormal levels of the membrane-associated proteins BBS4 and PKD2"
    explanation: >-
      CEP290 loss disrupts the balance of intraflagellar transport machinery,
      the transport system that delivers outer-segment cargo.
  downstream:
  - target: Photoreceptor Outer Segment Degeneration
    description: >-
      Loss of phototransduction protein trafficking causes outer-segment
      dysgenesis and progressive photoreceptor death.
    evidence:
    - reference: PMID:20819941
      reference_title: "CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content."
      supports: SUPPORT
      evidence_source: MODEL_ORGANISM
      snippet: "Defects in the localization of several ciliary proteins were found in photoreceptors and olfactory sensory neurons of the rd16 mouse, which harbors a hypomorphic in-frame deletion in Cep290 and displays early-onset retinal degeneration and anosmia"
      explanation: >-
        In the hypomorphic Cep290 rd16 mouse, ciliary-protein mislocalization in
        photoreceptors is accompanied by early-onset retinal degeneration,
        evidencing the causal step from trafficking failure to photoreceptor
        degeneration.

- name: Photoreceptor Outer Segment Degeneration
  conforms_to: "ciliopathy_dysfunction#Photoreceptor Connecting Cilium Degeneration"
  description: >-
    The photoreceptor outer segment is a specialized non-motile sensory cilium
    that depends on connecting-cilium transport for its assembly and renewal.
    CEP290-driven trafficking failure impairs outer-segment morphogenesis and
    maintenance, producing severe congenital photoreceptor dysfunction with a
    non-recordable electroretinogram and progressive retinal degeneration. In
    CEP290-LCA the foveal photoreceptor layer is relatively preserved on OCT
    early in life, defining a therapeutic window.
  cell_types:
  - preferred_term: photoreceptor cell
    term:
      id: CL:0000210
      label: photoreceptor cell
  - preferred_term: retinal cone cell
    term:
      id: CL:0000573
      label: retinal cone cell
  biological_processes:
  - preferred_term: photoreceptor cell maintenance
    term:
      id: GO:0045494
      label: photoreceptor cell maintenance
    modifier: DECREASED
  evidence:
  - reference: PMID:30559420
    reference_title: "Effect of an intravitreal antisense oligonucleotide on vision in Leber congenital amaurosis due to a photoreceptor cilium defect."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Photoreceptor ciliopathies constitute the most common molecular mechanism of the childhood blindness Leber congenital amaurosis."
    explanation: >-
      Frames LCA, including CEP290-LCA, as a photoreceptor ciliopathy in which
      ciliary dysfunction drives the photoreceptor failure underlying blindness.
  - reference: PMID:20819941
    reference_title: "CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: "CEP290 mutations are a common cause of Leber congenital amaurosis (LCA; den Hollander et al., 2006; Sundaresan et al., 2009), in which blindness results from degeneration of the retina but other organ systems are often unaffected."
    explanation: >-
      Confirms that in CEP290-LCA, blindness results specifically from retinal
      (photoreceptor) degeneration, typically without extra-retinal involvement.
  - reference: PMID:28510626
    reference_title: "Outcome Measures for Clinical Trials of Leber Congenital Amaurosis Caused by the Intronic Mutation in the CEP290 Gene."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "OCT analyses indicated retained central photoreceptors with abnormal distal laminae."
    explanation: >-
      In CEP290-LCA patients, central (foveal) photoreceptors are structurally
      retained despite functional loss, the structure-function dissociation that
      defines the therapeutic window for splice-correcting and gene-editing
      therapies.

phenotypes:
- name: Severe early-onset visual impairment
  description: >-
    Profound visual impairment or blindness within the first year of life,
    the defining feature of Leber congenital amaurosis.
  phenotype_term:
    preferred_term: Severe congenital visual impairment
    term:
      id: HP:0000505
      label: Visual impairment
    onset:
      onset_category: CONGENITAL
  evidence:
  - reference: PMID:38709228
    reference_title: "Gene Editing for CEP290-Associated Retinal Degeneration."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "CEP290-associated inherited retinal degeneration causes severe early-onset vision loss due to pathogenic variants in CEP290."
    explanation: >-
      Establishes severe early-onset vision loss as the defining clinical
      feature of CEP290-associated retinal degeneration (LCA10).
- name: Nystagmus
  description: Involuntary roving eye movements typical of early-onset severe retinal dystrophy.
  phenotype_term:
    preferred_term: Nystagmus
    term:
      id: HP:0000639
      label: Nystagmus
  evidence:
  - reference: PMID:28510626
    reference_title: "Outcome Measures for Clinical Trials of Leber Congenital Amaurosis Caused by the Intronic Mutation in the CEP290 Gene."
    supports: PARTIAL
    evidence_source: HUMAN_CLINICAL
    snippet: "OCI was abnormal in most patients."
    explanation: >-
      Oculomotor control and instability (OCI) was abnormal in most CEP290-LCA
      patients, consistent with the nystagmus/oculomotor instability of
      early-onset severe retinal dystrophy (PARTIAL: OCI is a quantitative
      oculomotor measure, not a categorical nystagmus diagnosis).
- name: Slow pupillary light response
  description: Sluggish or absent pupillary responses reflecting profound photoreceptor dysfunction.
  phenotype_term:
    preferred_term: Sluggish pupillary light response
    term:
      id: HP:0030211
      label: Slow pupillary light response
  evidence:
  - reference: PMID:28510626
    reference_title: "Outcome Measures for Clinical Trials of Leber Congenital Amaurosis Caused by the Intronic Mutation in the CEP290 Gene."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "TPLR was nondetectable in the majority of patients, with responders demonstrating severe losses in light sensitivity."
    explanation: >-
      Transient pupillary light reflex (TPLR) was nondetectable in most
      CEP290-LCA patients, directly supporting the sluggish/absent pupillary
      light response.
- name: Undetectable electroretinogram
  description: >-
    Severely reduced or non-recordable ERG responses, a hallmark diagnostic
    feature of Leber congenital amaurosis.
  phenotype_term:
    preferred_term: Undetectable electroretinogram
    term:
      id: HP:0000550
      label: Undetectable electroretinogram
- name: Hyperopia
  description: High hyperopia is commonly associated with Leber congenital amaurosis.
  phenotype_term:
    preferred_term: Hyperopia
    term:
      id: HP:0000540
      label: Hypermetropia
- name: Oculodigital sign
  description: >-
    The oculodigital sign (Franceschetti's sign) — habitual eye poking, pressing,
    and rubbing — is a classic, near-pathognomonic feature of Leber congenital
    amaurosis and other early-onset severe retinal dystrophies, reflecting profound
    congenital visual impairment.
  phenotype_term:
    preferred_term: Oculodigital sign (eye poking)
    term:
      id: HP:0001483
      label: Eye poking
- name: Photophobia
  description: >-
    Photophobia (light sensitivity / photoaversion) is frequently reported in
    Leber congenital amaurosis, although photophobia and nyctalopia vary by genotype.
  phenotype_term:
    preferred_term: Photophobia
    term:
      id: HP:0000613
      label: Photophobia
- name: Pigmentary retinopathy
  description: >-
    Although the fundus may appear near-normal in infancy, pigmentary retinal
    changes (including a salt-and-pepper appearance and bone-spicule pigmentation)
    typically develop over the first and second decades as photoreceptor
    degeneration progresses.
  phenotype_term:
    preferred_term: Pigmentary retinopathy (salt-and-pepper fundus)
    term:
      id: HP:0000580
      label: Pigmentary retinopathy
- name: Cystoid macular changes
  description: >-
    Cystic / cystoid maculopathy and macular pseudo-cyst lesions are reported on
    optical coherence tomography in CEP290-related Leber congenital amaurosis.
  phenotype_term:
    preferred_term: Cystoid macular edema
    term:
      id: HP:0011505
      label: Cystoid macular edema

genetic:
- name: CEP290
  features: >-
    CEP290 encodes a large (290 kDa) centrosomal and ciliary transition-zone
    protein. It is the most frequently mutated gene in Leber congenital
    amaurosis. The recurrent deep-intronic variant c.2991+1655A>G (p.Cys998*) is
    the single most common LCA-causing allele in populations of European
    ancestry; it creates a strong cryptic splice donor that inserts a 128-bp
    pseudo-exon containing a premature stop codon, while still permitting some
    correct splicing (a hypomorphic effect) that underlies amenability to
    splice-correcting antisense therapy.
  gene_term:
    preferred_term: CEP290
    term:
      id: hgnc:29021
      label: CEP290
  association: Causative
  evidence:
  - reference: PMID:16909394
    reference_title: "Mutations in the CEP290 (NPHP6) gene are a frequent cause of Leber congenital amaurosis."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "The defect is caused by an intronic mutation (c.2991+1655A-->G) that creates a strong splice-donor site and inserts a cryptic exon in the CEP290 messenger RNA."
    explanation: >-
      Identifies the recurrent deep-intronic CEP290 c.2991+1655A>G variant and its
      cryptic-exon splicing mechanism, the molecular basis of LCA10.
  - reference: PMID:16909394
    reference_title: "Mutations in the CEP290 (NPHP6) gene are a frequent cause of Leber congenital amaurosis."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "CEP290 mutations therefore represent one of the most frequent causes of LCA identified so far."
    explanation: >-
      Establishes CEP290 as one of the most frequent causes of Leber congenital
      amaurosis.
  - reference: PMID:20690115
    reference_title: "CEP290, a gene with many faces: mutation overview and presentation of CEP290base."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "mutations cause a wide variety of distinct phenotypes, ranging from isolated blindness over Senior-Loken syndrome (SLS), nephronophthisis (NPHP)"
    explanation: >-
      Documents the CEP290 allelic spectrum: hypomorphic alleles cause isolated
      blindness (LCA10), while more severe alleles cause syndromic ciliopathies.
      Evidence source OTHER (mutation-overview review).

treatments:
- name: Sepofarsen (QR-110) intravitreal antisense oligonucleotide
  description: >-
    Intravitreally delivered RNA antisense oligonucleotide designed to correct
    aberrant splicing caused by the CEP290 c.2991+1655A>G variant, restoring
    wild-type CEP290 mRNA and protein in photoreceptors. Early-phase studies
    (including durable single-dose efficacy in an exceptional responder) were
    encouraging, but the pivotal randomized, sham-controlled Phase 2/3 ILLUMINATE
    trial (NCT03913143) did not meet its primary endpoint of mean change in
    best-corrected visual acuity at month 12; clinical development continued with
    the Phase 3 HYPERION trial (NCT06891443). This benefit-risk uncertainty
    should be weighed alongside the dose-dependent cataract safety signal.
  therapeutic_modality: ANTISENSE_OLIGONUCLEOTIDE
  aso_details:
    aso_mechanism: SPLICE_MODULATION_EXON_SKIPPING
    target_gene:
      preferred_term: CEP290
      term:
        id: hgnc:29021
        label: CEP290
    target_transcript: CEP290 pre-mRNA (intron 26 cryptic exon)
    aso_chemistry: TWO_PRIME_O_METHYL
    conjugation: UNCONJUGATED
  treatment_term:
    preferred_term: Pharmacotherapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
  target_mechanisms:
  - target: CEP290 Transition Zone and Connecting Cilium Gating Failure
    treatment_effect: RESTORES
    description: >-
      Splice-correcting ASO restores wild-type CEP290 mRNA, repairing the
      transition-zone gating defect.
  evidence:
  - reference: PMID:30559420
    reference_title: "Effect of an intravitreal antisense oligonucleotide on vision in Leber congenital amaurosis due to a photoreceptor cilium defect."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Ten patients with Leber congenital amaurosis carrying the c.2991+1655A>G allele in the ciliopathy gene centrosomal protein 290 (CEP290) were treated"
    explanation: >-
      First-in-human trial of the splice-correcting antisense oligonucleotide
      (sepofarsen/QR-110) targeting the CEP290 c.2991+1655A>G allele.
  - reference: PMID:30559420
    reference_title: "Effect of an intravitreal antisense oligonucleotide on vision in Leber congenital amaurosis due to a photoreceptor cilium defect."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "There were no serious adverse events, and vision improved at 3 months. The visual acuity of one exceptional responder improved from light perception to 20/400."
    explanation: >-
      Demonstrates early efficacy of sepofarsen, including a marked responder,
      supporting splice correction as a disease-modifying approach.
  - reference: PMID:35379979
    reference_title: "Intravitreal antisense oligonucleotide sepofarsen in Leber congenital amaurosis type 10: a phase 1b/2 trial."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Statistically significant improvements in visual acuity and retinal sensitivity were reported (post hoc analysis)."
    explanation: >-
      Phase 1b/2 trial reports functional vision gains with sepofarsen.
  - reference: PMID:35379979
    reference_title: "Intravitreal antisense oligonucleotide sepofarsen in Leber congenital amaurosis type 10: a phase 1b/2 trial."
    supports: PARTIAL
    evidence_source: HUMAN_CLINICAL
    snippet: "Eight patients developed cataracts, of which six (75.0%) were categorized as serious"
    explanation: >-
      Documents the dose-dependent cataract safety signal that led to selection
      of the lower-dose regimen; relevant to the treatment's benefit-risk profile.
  - reference: PMID:33795869
    reference_title: "Durable vision improvement after a single treatment with antisense oligonucleotide sepofarsen: a case report."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "At 15 months, there was sustained efficacy"
    explanation: >-
      Single-dose durability case report (patient P11 from NCT03140969): a single
      intravitreal sepofarsen injection produced sustained efficacy at 15 months,
      supporting durable splice correction even though it declined from the ~3-month
      peak. Tempers but does not override the pivotal ILLUMINATE primary-endpoint miss.
- name: EDIT-101 in vivo CRISPR-Cas9 gene editing
  description: >-
    Subretinally delivered AAV5 vector encoding Staphylococcus aureus Cas9 and
    guide RNAs that excise the intronic region containing the CEP290
    c.2991+1655A>G variant, eliminating the cryptic splice site and restoring
    functional CEP290. Because CEP290 cDNA exceeds AAV packaging capacity,
    in vivo editing (rather than gene supplementation) is used.
  therapeutic_modality: GENE_EDITING
  treatment_term:
    preferred_term: gene therapy
    term:
      id: MAXO:0001001
      label: gene therapy
  evidence:
  - reference: PMID:38709228
    reference_title: "Gene Editing for CEP290-Associated Retinal Degeneration."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "EDIT-101 is a clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein 9 (Cas9) gene-editing complex designed to treat inherited retinal degeneration caused by a specific damaging variant in intron 26 of CEP290 (IVS26 variant)."
    explanation: >-
      Defines EDIT-101 as an in vivo CRISPR-Cas9 therapy targeting the CEP290
      intron 26 (IVS26) c.2991+1655A>G variant.
  - reference: PMID:38709228
    reference_title: "Gene Editing for CEP290-Associated Retinal Degeneration."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Nine participants (64%) had a meaningful improvement from baseline in the best corrected visual acuity, the sensitivity to red light as measured with FST, or the score on the mobility test."
    explanation: >-
      Phase 1-2 BRILLIANCE trial shows meaningful functional improvement in a
      majority of participants after in vivo CRISPR editing.
- name: Low-vision supportive care
  description: Visual rehabilitation, low-vision aids, and supportive management.
  treatment_term:
    preferred_term: supportive care
    term:
      id: MAXO:0000950
      label: supportive care

clinical_trials:
- name: NCT03140969
  phase: PHASE_II
  status: COMPLETED
  description: >-
    Open-label, multiple-dose, dose-escalation study evaluating intravitreal
    sepofarsen (QR-110) antisense oligonucleotide in LCA10 due to the CEP290
    c.2991+1655A>G (p.Cys998X) variant.
  target_phenotypes:
  - preferred_term: Severe visual impairment
    term:
      id: HP:0000505
      label: Visual impairment
  evidence:
  - reference: clinicaltrials:NCT03140969
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "evaluate the safety and tolerability of QR-110 administered via intravitreal injection in subjects with LCA due to the CEP290 p.Cys998X mutation"
    explanation: >-
      Registry record for the first-in-human sepofarsen trial in CEP290-LCA10.
- name: NCT03872479
  phase: PHASE_II
  status: COMPLETED
  description: >-
    Open-label, single-ascending-dose study (BRILLIANCE) evaluating subretinal
    EDIT-101 in vivo CRISPR-Cas9 gene editing in LCA10 caused by the CEP290
    IVS26 c.2991+1655A>G variant.
  target_phenotypes:
  - preferred_term: Severe visual impairment
    term:
      id: HP:0000505
      label: Visual impairment
  evidence:
  - reference: clinicaltrials:NCT03872479
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "evaluate the safety, tolerability and efficacy of a single escalating doses of EDIT-101 administered via subretinal injection in participants with LCA10"
    explanation: >-
      Registry record for the BRILLIANCE in vivo CRISPR-Cas9 gene-editing trial
      in CEP290-LCA10.
- name: NCT03913143
  phase: PHASE_III
  status: COMPLETED
  description: >-
    ILLUMINATE — the pivotal double-masked, randomized, sham-controlled,
    multiple-dose Phase 2/3 trial of intravitreal sepofarsen (QR-110) in LCA10
    due to the CEP290 c.2991+1655A>G (p.Cys998X) variant. The trial did not meet
    its primary endpoint of mean change from baseline in best-corrected visual
    acuity at month 12, an important benefit-risk consideration for the sepofarsen
    program (no peer-reviewed PMID is available; outcome from the sponsor's
    public topline announcement, so it is captured here as descriptive context
    rather than as a citable evidence claim).
  target_phenotypes:
  - preferred_term: Severe visual impairment
    term:
      id: HP:0000505
      label: Visual impairment
  evidence:
  - reference: clinicaltrials:NCT03913143
    supports: PARTIAL
    evidence_source: HUMAN_CLINICAL
    snippet: "evaluate the efficacy, safety, tolerability and systemic exposure of sepofarsen"
    explanation: >-
      Registry record for the pivotal Phase 2/3 ILLUMINATE sepofarsen trial in
      CEP290-LCA10. Marked PARTIAL because the registry summary documents the trial
      design but not its reported primary-endpoint outcome.
- name: NCT06891443
  phase: PHASE_III
  status: RECRUITING
  description: >-
    HYPERION — a double-masked, randomized, placebo-controlled, paired-eye
    Phase 3 trial of sepofarsen in LCA10 due to the CEP290 c.2991+1655A>G
    (p.Cys998X) variant, representing continued clinical development of sepofarsen.
  target_phenotypes:
  - preferred_term: Severe visual impairment
    term:
      id: HP:0000505
      label: Visual impairment
  evidence:
  - reference: clinicaltrials:NCT06891443
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "placebo-controlled, paired-eye study"
    explanation: >-
      Registry record for the HYPERION Phase 3 sepofarsen trial in CEP290-LCA10.
📚

References & Deep Research

References

1
Nonsyndromic Leber Congenital Amaurosis / Early-Onset Severe Retinal Dystrophy Overview
1 finding
This GeneReviews entry is a multi-gene nonsyndromic LCA/EOSRD overview rather than a CEP290/LCA10-specific chapter, and the available cached record is a generic purpose/scope abstract without quotable, disease-specific clinical, diagnostic, or management text. Disease-specific claims in this entry are therefore sourced from primary literature (den Hollander 2006, Coppieters 2010, Cideciyan 2019/2021, Russell 2022, Pierce 2024) rather than from quotable GeneReviews snippets; the GeneReviews overview is retained as the tagged clinical baseline reference.
"characteristics of nonsyndromic Leber congenital amaurosis"

Deep Research

1
Falcon
1. Disease Information
Edison Scientific Literature 31 citations 2026-06-26T23:34:31.135160

1. Disease Information

Overview

Leber congenital amaurosis 10 (LCA10) is a severe, autosomal recessive inherited retinal dystrophy caused by biallelic pathogenic variants in the CEP290 gene (centrosomal protein 290). It represents the most common genetic subtype of Leber congenital amaurosis, accounting for approximately 15–30% of all LCA cases in Caucasian populations and over 20% across multiple cohorts (leroy2021lebercongenitalamaurosis pages 1-2, huang2021leber’scongenitalamaurosis pages 6-7, gong2024infantilenystagmussyndrome—associated pages 4-5). LCA10 typically presents in early infancy with severe visual impairment or blindness, classifying it as one of the most severe forms of inherited retinal degeneration and a leading cause of childhood blindness (leroy2021lebercongenitalamaurosis pages 1-2, leroy2021lebercongenitalamaurosis pages 2-4).

Key Identifiers

The following table summarizes the core identifiers and defining characteristics of LCA10:

Field Value Notes / Evidence
Disease name Leber congenital amaurosis 10 (LCA10) CEP290-associated subtype of Leber congenital amaurosis; severe inherited retinal degeneration (leroy2021lebercongenitalamaurosis pages 1-2, leroy2021lebercongenitalamaurosis pages 2-4)
Disease class Mendelian inherited retinal disease; ciliopathy Autosomal recessive retinal ciliopathy caused by biallelic CEP290 loss-of-function variants (leroy2021lebercongenitalamaurosis pages 1-2, huang2021leber’scongenitalamaurosis pages 6-7)
OMIM LCA: #204000; CEP290 gene: 610142 General LCA OMIM and causal gene OMIM reported in cohort/review sources (zobor2023geneticandclinical pages 1-2, huang2021leber’scongenitalamaurosis pages 6-7)
MONDO ID MONDO_0018998 MONDO identifier retrieved for Leber congenital amaurosis in disease-target association context (OpenTargets Search: Leber congenital amaurosis-CEP290)
Orphanet Not confidently established from retrieved evidence Disease-level rare disease resource exists for LCA broadly, but no subtype-specific Orphanet identifier for LCA10 was confirmed in retrieved sources
ICD-10 / ICD-11 Not confidently established from retrieved evidence LCA is typically coded within congenital retinal dystrophy/blindness frameworks, but no LCA10-specific ICD code was confirmed in retrieved sources
Common synonyms LCA10; CEP290-associated LCA; CEP290-related retinal degeneration; CEP290-associated inherited retinal degeneration Synonyms used across review and trial literature (leroy2021lebercongenitalamaurosis pages 1-2, russell2022intravitrealantisenseoligonucleotide pages 1-2, pierce2024geneeditingfor pages 1-3)
Causal gene CEP290 (centrosomal protein 290) Top disease-associated target for LCA in Open Targets; encodes a transition-zone/basal body ciliary protein (OpenTargets Search: Leber congenital amaurosis-CEP290, mcdonald2024retinalciliopathiesand pages 7-8, huang2021leber’scongenitalamaurosis pages 6-7)
Most common pathogenic variant c.2991+1655A>G (deep intronic; often called IVS26 variant; p.Cys998X consequence via cryptic exon) Most frequent LCA10-associated variant; creates a cryptic exon and premature stop, reducing normal CEP290 transcript/protein (leroy2021lebercongenitalamaurosis pages 1-2, mcdonald2024retinalciliopathiesand pages 7-8, huang2021leber’scongenitalamaurosis pages 6-7)
Inheritance Autosomal recessive Typically due to biallelic pathogenic CEP290 variants (leroy2021lebercongenitalamaurosis pages 1-2, huang2021leber’scongenitalamaurosis pages 6-7)
Estimated prevalence LCA overall about 1:30,000 to 1:80,000; ~1:50,000 often cited in Europe/North America Retrieved evidence provides LCA prevalence range; LCA10 is a major subtype, especially in Caucasian/Northern European cohorts (leroy2021lebercongenitalamaurosis pages 1-2, zobor2023geneticandclinical pages 1-2, huang2021leber’scongenitalamaurosis pages 6-7)
Relative frequency within LCA CEP290 accounts for about 15–30% of LCA overall; >20% in several cohorts; 29% among LCA cases in one German cohort Frequency varies by ancestry and cohort (huang2021leber’scongenitalamaurosis pages 6-7, zobor2023geneticandclinical pages 1-2, gong2024infantilenystagmussyndrome—associated pages 4-5)
Age at onset Congenital / early childhood Severe visual impairment usually recognized from birth or in early childhood; often childhood blindness (leroy2021lebercongenitalamaurosis pages 1-2, leroy2021lebercongenitalamaurosis pages 2-4, russell2022intravitrealantisenseoligonucleotide pages 1-2)
Core phenotype summary Severe early-onset cone-rod dystrophy with markedly reduced vision, nystagmus, extinguished or severely reduced ERG, hyperopia/photophobia, progressive photoreceptor degeneration Common disease-level characteristics across reviews and cohorts (leroy2021lebercongenitalamaurosis pages 2-4, huang2021leber’scongenitalamaurosis pages 6-7)
Evidence source type Aggregated disease-level literature and clinical trial/natural history resources, not EHR-derived Based on reviews, cohort studies, mechanistic studies, clinical trials, and Open Targets disease-target evidence (OpenTargets Search: Leber congenital amaurosis-CEP290, leroy2021lebercongenitalamaurosis pages 1-2, pierce2024geneeditingfor pages 1-3)

Table: This table summarizes the core identifiers and defining characteristics of Leber congenital amaurosis 10, including its causal gene, hallmark variant, inheritance, prevalence, and onset. It is useful as a compact disease knowledge base entry scaffold grounded in the retrieved evidence.

Synonyms and Alternative Names

Common synonyms include: LCA10, CEP290-associated LCA, CEP290-related retinal degeneration, CEP290-associated inherited retinal degeneration, and Leber congenital amaurosis type 10 (leroy2021lebercongenitalamaurosis pages 1-2, pierce2024geneeditingfor pages 1-3). The disease information is derived from aggregated disease-level resources including cohort studies, clinical trials, review literature, and curated databases such as OMIM, OpenTargets, and ClinicalTrials.gov.


2. Etiology

Disease Causal Factors

LCA10 is a monogenic Mendelian disorder caused exclusively by biallelic loss-of-function mutations in the CEP290 gene located on chromosome 12q21.32 (huang2021leber’scongenitalamaurosis pages 6-7). There are no known environmental, infectious, or lifestyle contributions to disease causation.

Genetic Risk Factors

The most common pathogenic variant is the deep intronic mutation c.2991+1655A>G (also referred to as the IVS26 variant or p.Cys998X), which is found in 60–89% of CEP290-related LCA patients depending on the cohort and ancestry (leroy2021lebercongenitalamaurosis pages 1-2, gong2024infantilenystagmussyndrome—associated pages 4-5, coppieters2010geneticscreeningof pages 13-14). This variant creates a cryptic splice donor site within intron 26, generating an aberrant exon containing a premature stop codon. This results in approximately 50% of CEP290 transcripts containing the cryptic exon and producing truncated, nonfunctional protein, while the remaining ~50% are correctly spliced (leroy2021lebercongenitalamaurosis pages 1-2, mcdonald2024retinalciliopathiesand pages 7-8). The reduced CEP290 protein level (~10% correctly spliced mRNA with residual full-length protein) is sufficient for ciliary function in most organs but is inadequate for the highly specialized photoreceptor cilium, explaining the retinal-specific phenotype (mcdonald2024retinalciliopathiesand pages 7-8).

Other pathogenic CEP290 variants include c.4723A>T (4–11% frequency), as well as numerous additional missense, nonsense, frameshift, and splice-site mutations at lower frequencies (leroy2021lebercongenitalamaurosis pages 1-2). CEP290 mutations are classified as pathogenic per ACMG/AMP guidelines and are germline in origin. The functional consequence is loss of function.

Modifier Genes

AHI1 (Abelson Helper Integration Site 1) has been identified as a potential modifier gene for CEP290-related phenotypes. In a Belgian cohort, two novel heterozygous AHI1 missense variants (p.Asn811Lys and p.His758Pro) were found in CEP290-LCA patients with neurological involvement (coppieters2010geneticscreeningof pages 4-7, coppieters2010geneticscreeningof pages 16-17). AHI1 plays a functional role in ciliogenesis and vesicle trafficking by mediating Rab8a localization, and AHI1 variants may modulate neurological severity in CEP290-related disease (coppieters2010geneticscreeningof pages 16-17).

Founder Effects

The c.2991+1655A>G variant represents a European founder mutation, with particularly high prevalence in Northern European populations. In a Belgian cohort, CEP290 accounted for 30% of all LCA mutations, with c.2991+1655A>G found in 89% of CEP290-related LCA patients (coppieters2010geneticscreeningof pages 13-14). In a German cohort, CEP290 accounted for 21% of all LCA-associated gene variants and 29% among LCA patients specifically (zobor2023geneticandclinical pages 1-2). CEP290 mutations are notably less prevalent in Chinese and Japanese populations (huang2021leber’scongenitalamaurosis pages 6-7).

Gene-Environment Interactions

No gene-environment interactions have been established for LCA10. As a purely genetic ciliopathy, the disease course is determined by the nature and severity of the CEP290 mutations.


3. Phenotypes

LCA10 presents as a severe cone-rod dystrophy with the following characteristic phenotypic features:

Phenotype HPO Term Frequency Onset Severity Progression
Severe visual impairment/blindness HP:0000505 62–89% Congenital / early infancy Severe Progressive (leroy2021lebercongenitalamaurosis pages 2-4, huang2021leber’scongenitalamaurosis pages 6-7)
Nystagmus HP:0000639 Very frequent Infantile Moderate–severe May stabilize (leroy2021lebercongenitalamaurosis pages 2-4, coppieters2010geneticscreeningof pages 13-14)
Photophobia HP:0000613 Frequent Childhood Moderate–severe Stable (leroy2021lebercongenitalamaurosis pages 2-4)
High hyperopia HP:0000540 Frequent Congenital / early childhood Variable Variable / often stable early (leroy2021lebercongenitalamaurosis pages 2-4)
Absent or severely reduced electroretinogram HP:0000512 Near-universal Congenital / early childhood Severe Typically persistent (leroy2021lebercongenitalamaurosis pages 2-4, zobor2023geneticandclinical pages 1-2)
Oculodigital sign / eye poking HP:0200026 Frequent Childhood Variable Variable (leroy2021lebercongenitalamaurosis pages 2-4, coppieters2010geneticscreeningof pages 13-14)
Sluggish pupillary reflex HP:0000654 Frequent Congenital Moderate Stable (leroy2021lebercongenitalamaurosis pages 2-4)
Marbleized / salt-and-pepper fundus HP:0007722 Frequent 1st–2nd decade Variable Progressive (leroy2021lebercongenitalamaurosis pages 2-4, coppieters2010geneticscreeningof pages 13-14)
Macular cyst-like lesions HP:0040049 Frequent Childhood to adulthood Variable Progressive / may fluctuate with degeneration (gong2024infantilenystagmussyndrome—associated pages 4-5)
Photoreceptor degeneration HP:0000510 Universal Postnatal Severe Progressive (leroy2021lebercongenitalamaurosis pages 1-2, moye2025subciliarylocalizationof pages 1-3, corralserrano2023eupatilinimprovescilia pages 3-6)
Cone-rod dystrophy pattern HP:0000548 Universal / characteristic Congenital / early childhood Severe Progressive (leroy2021lebercongenitalamaurosis pages 2-4, coppieters2010geneticscreeningof pages 13-14)

Table: This table summarizes the core phenotypic features reported for CEP290-associated Leber congenital amaurosis 10, aligned to suggested HPO terms and annotated with typical frequency, onset, severity, and progression. It is useful for knowledge-base curation and phenotype harmonization.

Quality of Life Impact

LCA10 has a profound impact on quality of life and development. Most patients experience severe visual impairment from infancy, which significantly affects developmental milestones, educational attainment, independence, and overall well-being (leroy2021lebercongenitalamaurosis pages 1-2, leroy2021lebercongenitalamaurosis pages 5-6). The societal burden includes substantial direct medical costs and indirect costs from loss of productivity and need for supportive services (leroy2021lebercongenitalamaurosis pages 1-2).


4. Genetic/Molecular Information

Causal Gene: CEP290

CEP290 (centrosomal protein 290; OMIM 610142; HGNC:29021; Ensembl ENSG00000198707) is located on chromosome 12q21.32 and encodes a 290 kDa centrosomal protein that localizes to the transition zone of the photoreceptor connecting cilium (huang2021leber’scongenitalamaurosis pages 6-7, OpenTargets Search: Leber congenital amaurosis-CEP290).

Pathogenic Variants

  • c.2991+1655A>G (IVS26 variant): Deep intronic founder variant creating a cryptic exon with premature stop codon (p.Cys998X); found in 60–89% of CEP290-LCA patients; classified as pathogenic (leroy2021lebercongenitalamaurosis pages 1-2, coppieters2010geneticscreeningof pages 13-14, mcdonald2024retinalciliopathiesand pages 7-8)
  • c.4723A>T: Second most common variant (4–11% frequency) (leroy2021lebercongenitalamaurosis pages 1-2)
  • Over 150 additional pathogenic variants have been identified in CEP290 across the ciliopathy spectrum, including missense, nonsense, frameshift, and splice-site mutations
  • All variants are germline in origin
  • Functional consequence: Loss of function

Allelic Heterogeneity and Pleiotropy

CEP290 mutations cause a spectrum of ciliopathies beyond LCA10, including Joubert syndrome, Senior-Løken syndrome, Meckel-Gruber syndrome, and Bardet-Biedl syndrome (gong2024infantilenystagmussyndrome—associated pages 4-5, huang2021leber’scongenitalamaurosis pages 6-7). The isolated retinal phenotype in LCA10 is attributed to the hypomorphic nature of the common c.2991+1655A>G variant, which permits residual CEP290 function in most organs (gong2024infantilenystagmussyndrome—associated pages 4-5, mcdonald2024retinalciliopathiesand pages 7-8).

Chromosomal Abnormalities

No large-scale chromosomal abnormalities are associated with LCA10. The disease is caused by point mutations or small insertions/deletions within the CEP290 gene.


5. Environmental Information

As a monogenic Mendelian ciliopathy, LCA10 has no established environmental, lifestyle, or infectious contributory factors. There are no known environmental protective or risk factors. Environmental exposures, toxins, radiation, diet, and infectious agents do not play a role in disease etiology.


6. Mechanism / Pathophysiology

Molecular Pathways and Cellular Processes

CEP290 is a structural protein of the ciliary transition zone—the gatekeeping compartment between the inner and outer segments of photoreceptors. Using advanced microscopy, CEP290 has been localized throughout the connecting cilium between doublet microtubules and the ciliary membrane with nine-fold symmetry (moye2025subciliarylocalizationof pages 11-12, moye2025subciliarylocalizationof pages 1-3).

The pathophysiological cascade in LCA10 proceeds as follows:

  1. Initial trigger: Biallelic CEP290 mutations reduce or eliminate functional CEP290 protein at the photoreceptor connecting cilium (mcdonald2024retinalciliopathiesand pages 7-8, corralserrano2023eupatilinimprovescilia pages 3-6).

  2. Ciliary structural defects: Loss of CEP290 results in aberrant connecting cilium membrane structure, confinement of the ciliary necklace and Y-links to the proximal connecting cilium, and stunted axonemes with abnormal ciliary vesicles (moye2025subciliarylocalizationof pages 11-12, moye2025subciliarylocalizationof pages 1-3).

  3. Transition zone protein redistribution: Transition zone proteins AHI1 and NPHP1 are abnormally restricted to the proximal connecting cilium, while other proteins (NPHP8, CEP89) remain unaffected, indicating CEP290 has selective roles in TZ protein spatial distribution (moye2025subciliarylocalizationof pages 1-3).

  4. Impaired protein trafficking: CEP290 dysfunction disrupts the ciliary gateway, leading to accumulation of rhodopsin and opsins in the outer nuclear layer instead of proper transport to the outer segment (corralserrano2023eupatilinimprovescilia pages 3-6).

  5. Outer segment formation failure: Outer segment disc formation is inhibited, accompanied by accumulation of extracellular vesicles (moye2025subciliarylocalizationof pages 11-12, moye2025subciliarylocalizationof pages 1-3).

  6. Photoreceptor degeneration: The combined effects of structural ciliary abnormalities, impaired protein trafficking, and failed outer segment formation result in progressive photoreceptor loss and retinal degeneration (moye2025subciliarylocalizationof pages 11-12, moye2025subciliarylocalizationof pages 1-3, corralserrano2023eupatilinimprovescilia pages 3-6).

Suggested GO Terms

  • GO:0060271 (cilium assembly)
  • GO:0032391 (photoreceptor connecting cilium)
  • GO:0001750 (photoreceptor outer segment)
  • GO:0042462 (eye photoreceptor cell development)
  • GO:0046548 (retinal rod cell development)

Cell Types Involved

  • Photoreceptor cells (CL:0000210) — primary cells affected
  • Rod photoreceptors (CL:0000604) — develop but rapidly degenerate postnatally
  • Cone photoreceptors (CL:0000573) — central cones lost early
  • Retinal pigment epithelium cells (CL:0002586) — secondary involvement

7. Anatomical Structures Affected

Organ Level

  • Primary organ: Eye (UBERON:0000970)
  • Specific structure: Retina (UBERON:0000966), particularly the photoreceptor layer
  • Body system: Visual/nervous system

Tissue and Cell Level

  • Photoreceptor layer (UBERON:0001787)
  • Outer nuclear layer (UBERON:0001789)
  • Photoreceptor outer segments (UBERON:0001817)
  • Connecting cilium/transition zone of photoreceptors

Subcellular Level

  • Primary cilium (GO:0005929)
  • Transition zone (GO:0035869)
  • Basal body/centriole (GO:0005814)
  • Ciliary membrane (GO:0060170)
  • Photoreceptor disc membrane (GO:0097449)

Localization

  • Bilateral, symmetric involvement
  • Both eyes affected; foveal architecture may be relatively preserved despite disproportionate vision loss (leroy2021lebercongenitalamaurosis pages 2-4)

8. Temporal Development

Onset

  • Typical age of onset: Congenital to early infancy (leroy2021lebercongenitalamaurosis pages 1-2, leroy2021lebercongenitalamaurosis pages 2-4)
  • Onset pattern: Insidious/congenital; visual impairment is usually recognized within the first months of life

Progression

  • Disease course: Progressive retinal degeneration
  • Rod photoreceptors develop but rapidly degenerate postnatally; most patients lose rods by their second decade (leroy2021lebercongenitalamaurosis pages 2-4)
  • The retina may initially appear normal, with white flecks or marbleized fundus appearing in the first to second decade, followed by pigmentary retinopathy (leroy2021lebercongenitalamaurosis pages 2-4, coppieters2010geneticscreeningof pages 13-14)
  • Severe vision loss (counting fingers or worse) occurs in 62–89% of patients (leroy2021lebercongenitalamaurosis pages 2-4, huang2021leber’scongenitalamaurosis pages 6-7)
  • Disease duration: Chronic, lifelong
  • Critical periods: Early childhood represents a window of opportunity for therapeutic intervention before irreversible photoreceptor loss

9. Inheritance and Population

Inheritance Pattern

  • Autosomal recessive (leroy2021lebercongenitalamaurosis pages 1-2, huang2021leber’scongenitalamaurosis pages 6-7)
  • Complete penetrance for biallelic pathogenic variants
  • Variable expressivity, particularly influenced by specific genotype and modifier genes (gong2024infantilenystagmussyndrome—associated pages 4-5, coppieters2010geneticscreeningof pages 4-7)

Epidemiology

  • Overall LCA prevalence: Approximately 1:30,000 to 1:80,000 newborns; ~1:50,000 in Europe and North America (leroy2021lebercongenitalamaurosis pages 1-2, zobor2023geneticandclinical pages 1-2)
  • LCA10 proportion: CEP290 accounts for 15–30% of LCA cases, making it the most common genetic subtype in Caucasians (huang2021leber’scongenitalamaurosis pages 6-7, zobor2023geneticandclinical pages 1-2)
  • Estimated LCA cases in Germany: ~2,000 (zobor2023geneticandclinical pages 1-2)
  • LCA affects 20% of blind children and accounts for 5% of all inherited retinal diseases (zobor2023geneticandclinical pages 1-2)

Population Demographics

  • Ethnic distribution: Highest frequency in Northern European/Caucasian populations; the c.2991+1655A>G variant is a European founder mutation (leroy2021lebercongenitalamaurosis pages 1-2, huang2021leber’scongenitalamaurosis pages 6-7)
  • Less prevalent in Chinese and Japanese populations (huang2021leber’scongenitalamaurosis pages 6-7)
  • CEP290 was the most common LCA-associated gene in Belgian (30%), German (21–29%), and other European cohorts (coppieters2010geneticscreeningof pages 13-14, zobor2023geneticandclinical pages 1-2)
  • Equal sex ratio; no sex predilection documented
  • Consanguinity increases risk in populations where it is practiced (coppieters2010geneticscreeningof pages 13-14)

10. Diagnostics

Clinical Tests

  • Electroretinography (ERG): Severely reduced or extinguished scotopic and photopic responses; often the first objective diagnostic test (leroy2021lebercongenitalamaurosis pages 2-4, zobor2023geneticandclinical pages 1-2)
  • Optical Coherence Tomography (OCT): Shows photoreceptor layer thinning with relatively preserved foveal architecture (leroy2021lebercongenitalamaurosis pages 2-4)
  • Fundus Autofluorescence (FAF): Abnormal autofluorescence patterns (leroy2021lebercongenitalamaurosis pages 2-4)
  • Full-Field Stimulus Testing (FST): Used to measure retinal sensitivity, particularly in clinical trials (pierce2024geneeditingfor pages 1-3)
  • Fundoscopy: Initially normal; white flecks, salt-and-pepper or marbleized appearance, and pigmentary changes develop over time (leroy2021lebercongenitalamaurosis pages 2-4, coppieters2010geneticscreeningof pages 13-14)

Genetic Testing

  • Recommended approach: Targeted next-generation sequencing gene panels for inherited retinal diseases (344+ genes), followed by Sanger sequencing for confirmation; achieves diagnosis in ~84.7% of pediatric IRD cases (leroy2021lebercongenitalamaurosis pages 2-4)
  • Single gene testing: Direct sequencing of CEP290, particularly for the common c.2991+1655A>G variant
  • Whole exome/genome sequencing: Useful for cases not resolved by panel testing
  • Note: The deep intronic c.2991+1655A>G variant may not be detected by standard exome sequencing; dedicated assays or intronic coverage are required

Differential Diagnosis

  • Other LCA subtypes (RPE65-LCA2, GUCY2D-LCA1, CRB1-LCA8, AIPL1-LCA4)
  • Early-onset retinitis pigmentosa
  • Congenital stationary night blindness
  • Achromatopsia
  • Other ciliopathies with retinal involvement (Joubert syndrome, Senior-Løken syndrome)

11. Outcome/Prognosis

Disease Course and Morbidity

  • Most patients experience severe visual impairment or legal blindness by the first decade of life (leroy2021lebercongenitalamaurosis pages 2-4, huang2021leber’scongenitalamaurosis pages 6-7)
  • LCA10 is the most severe form of LCA, associated with profoundly impaired vision at an earlier age compared to other subtypes such as LCA2 (leroy2021lebercongenitalamaurosis pages 5-6)
  • Life expectancy is typically normal when the disease presents in its isolated retinal form (LCA10 without syndromic features)
  • Disease-specific mortality is not elevated for non-syndromic LCA10

Complications

  • Progressive photoreceptor degeneration leading to complete blindness
  • Developmental delays due to severe early vision loss
  • Potential for syndromic features (renal dysfunction, neurological involvement) in patients with certain CEP290 genotypes (coppieters2010geneticscreeningof pages 13-14)

Prognostic Factors

  • Specific genotype (homozygous c.2991+1655A>G vs. compound heterozygous variants)
  • Baseline visual acuity was identified as the only predictor of treatment response in sepofarsen trials (russell2022intravitrealantisenseoligonucleotide pages 6-7)
  • Residual photoreceptor count at time of intervention
  • Age at treatment initiation

12. Treatment

Current Approved Treatments

There are currently no approved treatments specifically for LCA10 (leroy2021lebercongenitalamaurosis pages 5-6). The only FDA/EMA-approved gene therapy for any LCA subtype is voretigene neparvovec (Luxturna) for RPE65-associated LCA (LCA2).

Experimental Treatments in Clinical Trials

The following table summarizes the clinical trial landscape for LCA10:

NCT Number Trial Name Therapy Type Phase Enrollment Status Sponsor
NCT03872479 BRILLIANCE EDIT-101 CRISPR gene editing Phase 1/2 34 Unknown / later reported as paused in secondary sources Editas Medicine, Inc. (pierce2024geneeditingfor pages 1-3, ling2023therapeuticgeneediting pages 8-9, saripalli2026genetherapyand pages 2-4)
NCT03140969 PQ-110-001 Sepofarsen (QR-110) Antisense oligonucleotide (ASO) Phase 1b/2 12 Completed ProQR Therapeutics (russell2022intravitrealantisenseoligonucleotide pages 1-2, leroy2021lebercongenitalamaurosis pages 6-7)
NCT03913143 ILLUMINATE Sepofarsen (QR-110) Antisense oligonucleotide (ASO) Phase 2/3 36 Active, not recruiting ProQR Therapeutics (ling2023therapeuticgeneediting pages 8-9)
NCT03913130 Extension study to PQ-110-001 Sepofarsen Antisense oligonucleotide (ASO) Phase 1/2 9 Terminated Laboratoires Théa (leroy2021lebercongenitalamaurosis pages 6-7)
NCT04855045 Pediatric sepofarsen study Sepofarsen Antisense oligonucleotide (ASO) Phase 2/3 15 Unknown ProQR Therapeutics (leroy2021lebercongenitalamaurosis pages 6-7)
NCT06891443 HYPERION Sepofarsen Antisense oligonucleotide (ASO) Phase 3 32 Recruiting Laboratoires Théa (leroy2021lebercongenitalamaurosis pages 6-7)
NCT03396042 Natural History Study of CEP290-Related Retinal Degeneration None (observational) Natural history / observational N/A 26 Completed Editas Medicine, Inc. (leroy2021lebercongenitalamaurosis pages 6-7)

Table: This table summarizes the main registered clinical studies for CEP290-associated Leber congenital amaurosis 10, including interventional therapy trials and the natural history study that informed trial design. It is useful for comparing modalities, development stage, recruitment status, and sponsors across the current LCA10 treatment landscape.

EDIT-101 (CRISPR-Cas9 Gene Editing)

EDIT-101 is a CRISPR-Cas9 gene editing therapy delivered via AAV5 subretinal injection, designed to excise or disable the aberrant cryptic exon created by the IVS26 variant in CEP290, thereby restoring normal splicing (pierce2024geneeditingfor pages 1-3). The BRILLIANCE trial (NCT03872479), a Phase 1–2 open-label study published in the New England Journal of Medicine (2024), enrolled 14 participants (12 adults aged 17–63 and 2 children aged 9 and 14). Key findings included: - No serious treatment-related adverse events or dose-limiting toxicity (pierce2024geneeditingfor pages 1-3) - 6 participants showed meaningful improvement in cone-mediated vision assessed by FST (pierce2024geneeditingfor pages 1-3) - 9 participants (64%) showed meaningful improvement in BCVA, red light sensitivity, or mobility test scores (pierce2024geneeditingfor pages 1-3) - 6 participants showed meaningful improvement in vision-related quality-of-life scores (pierce2024geneeditingfor pages 1-3) - Suggested MAXO term: MAXO:0001001 (gene therapy)

Sepofarsen (QR-110; Antisense Oligonucleotide)

Sepofarsen is an RNA antisense oligonucleotide administered by intravitreal injection that targets the c.2991+1655A>G variant to restore normal CEP290 mRNA splicing (russell2022intravitrealantisenseoligonucleotide pages 1-2). In the Phase 1b/2 trial (NCT03140969) published in Nature Medicine (2022), 11 patients received multiple doses: - 90.9% developed ocular adverse events in the treated eye, mostly mild and dose-dependent (russell2022intravitrealantisenseoligonucleotide pages 1-2) - 8 of 11 patients developed cataracts, 6 requiring lens replacement (russell2022intravitrealantisenseoligonucleotide pages 1-2) - Statistically significant improvements in visual acuity and retinal sensitivity were reported (russell2022intravitrealantisenseoligonucleotide pages 1-2, russell2022intravitrealantisenseoligonucleotide pages 6-7) - 45% of patients gained at least 15 ETDRS letters (saripalli2026genetherapyand pages 2-4, russell2022intravitrealantisenseoligonucleotide pages 6-7) - The Phase 2/3 ILLUMINATE trial (NCT03913143) ultimately failed to meet its primary endpoint of mean change in BCVA at 12 months (ling2023therapeuticgeneediting pages 8-9) - A new HYPERION Phase 3 trial (NCT06891443) is currently recruiting with Laboratoires Théa as sponsor

Pharmacological Approaches

Preclinical studies have identified two mutation-agnostic small molecule approaches: - Eupatilin (flavonoid): Improved cilium formation and length in CEP290 LCA10 patient-derived fibroblasts, CEP290 knockout RPE1 cells, and retinal organoids, and reduced rhodopsin retention in the outer nuclear layer (corralserrano2023eupatilinimprovescilia pages 3-6) - Taprenepag (EP2 receptor agonist): EP2-mediated cAMP elevation enhanced ciliogenesis across all CEP290-mutant cell types and in Cep290-deficient mice, promoting photoreceptor outer segment development and partially restoring retinal responses

Supportive Care

  • Low-vision aids and assistive devices
  • Orientation and mobility training
  • Educational accommodations for visually impaired children
  • Genetic counseling for family members
  • Suggested MAXO term: MAXO:0000015 (supportive care)

13. Prevention

Primary Prevention

  • No primary prevention measures exist for LCA10 beyond genetic counseling and reproductive planning
  • Carrier screening: Recommended for individuals with family history of LCA or known CEP290 carrier status
  • Preimplantation genetic testing (PGT) and prenatal testing are available for families with known CEP290 variants
  • Suggested MAXO term: MAXO:0000127 (genetic counseling)

Secondary Prevention

  • Early molecular diagnosis through NGS-based gene panels enables identification of affected individuals and potential enrollment in clinical trials before irreversible photoreceptor loss
  • Newborn screening is not currently standard for LCA10

Genetic Counseling

  • For autosomal recessive inheritance, each offspring of two carrier parents has a 25% risk of being affected
  • Carrier frequency for c.2991+1655A>G in Northern European populations is not precisely established but is expected to be relatively common given the high proportion of LCA10 among LCA cases

14. Other Species / Natural Disease

Comparative Biology

CEP290 is highly conserved across vertebrate species. Mutations in orthologous genes cause retinal degeneration in multiple species: - Mouse (Mus musculus, NCBI Taxon: 10090): The rd16 mouse carries an in-frame deletion in Cep290 resulting in early-onset retinal degeneration with disrupted RPGR interaction (malglaive2023pharmacologicalcampstimulation pages 26-30). Cep290 knockout mice exhibit severe photoreceptor ciliary defects including aberrant connecting cilium membrane, stunted axonemes, and failure of outer segment formation (moye2025subciliarylocalizationof pages 11-12, moye2025subciliarylocalizationof pages 1-3). - Zebrafish (Danio rerio, NCBI Taxon: 7955): Zebrafish cep290 mutants exhibit progressive cone photoreceptor degeneration with upregulation of inflammatory and stress-related pathways, but fail to stimulate regeneration despite Müller glia proliferation capacity - Human iPSC-derived retinal organoids: Patient-derived organoids carrying homozygous c.2991+1655A>G show reduced ciliation, shortened cilia, absent CEP290 at the connecting cilium, and impaired outer segment development (mcdonald2024retinalciliopathiesand pages 7-8, corralserrano2023eupatilinimprovescilia pages 3-6)

Limitations of Animal Models

A humanized mouse model carrying the c.2991+1655A>G intronic mutation failed to exhibit a retinal phenotype due to limited recognition of the cryptic splice site by the mouse spliceosome, necessitating development of fully human-derived model systems (mcdonald2024retinalciliopathiesand pages 7-8).


15. Model Organisms

Mouse Models

  • rd16 mouse: In-frame deletion in Cep290/Nphp6; exhibits early-onset retinal degeneration with disrupted RPGR interaction; recapitulates cone disease with natural disease progression (malglaive2023pharmacologicalcampstimulation pages 26-30)
  • Cep290 knockout mouse: Complete loss of CEP290 results in ciliogenesis initiation but aberrant connecting cilium membrane, stunted axonemes, abnormal ciliary vesicles, failure of outer segment disc formation, and photoreceptor degeneration (moye2025subciliarylocalizationof pages 11-12, moye2025subciliarylocalizationof pages 1-3)
  • Nphp6 hypomorph mouse: All-cone model generated to mimic human retinal ciliopathy (malglaive2023pharmacologicalcampstimulation pages 26-30)
  • Humanized c.2991+1655A>G knock-in mouse: Failed to recapitulate retinal phenotype due to species-specific spliceosome differences (mcdonald2024retinalciliopathiesand pages 7-8)

Zebrafish Models

  • cep290−/− zebrafish exhibit progressive cone photoreceptor loss, microglia activation, inflammation, and upregulation of genes in apoptosis, stress response, and PDGF signaling pathways; rod precursor proliferation occurs but Müller glia-mediated regeneration is not triggered

Human Cell Models

  • Patient-derived iPSC retinal organoids are the gold standard for modeling CEP290-LCA10 pathology, recapitulating reduced ciliation, shortened cilia, absent CEP290 at the connecting cilium, impaired outer segment development, and protein trafficking defects (mcdonald2024retinalciliopathiesand pages 7-8, corralserrano2023eupatilinimprovescilia pages 3-6)

Summary

Leber congenital amaurosis 10 is the most common genetic subtype of LCA, caused by biallelic loss-of-function mutations in CEP290, with the deep intronic founder variant c.2991+1655A>G being predominant in European populations (leroy2021lebercongenitalamaurosis pages 1-2, coppieters2010geneticscreeningof pages 13-14). The disease manifests as severe congenital/early-onset cone-rod dystrophy due to failure of photoreceptor ciliary transition zone function, leading to progressive photoreceptor degeneration (moye2025subciliarylocalizationof pages 11-12, moye2025subciliarylocalizationof pages 1-3, corralserrano2023eupatilinimprovescilia pages 3-6). While no approved treatments exist, both CRISPR-Cas9 gene editing (EDIT-101) and antisense oligonucleotide therapy (sepofarsen) have demonstrated promising safety profiles and efficacy signals in clinical trials (pierce2024geneeditingfor pages 1-3, russell2022intravitrealantisenseoligonucleotide pages 1-2, russell2022intravitrealantisenseoligonucleotide pages 6-7). The BRILLIANCE trial published in the New England Journal of Medicine (2024) demonstrated that in vivo CRISPR-Cas9 gene editing can safely improve photoreceptor function in LCA10 patients (pierce2024geneeditingfor pages 1-3), and a new Phase 3 trial of sepofarsen (HYPERION, NCT06891443) is currently recruiting. Novel mutation-agnostic pharmacological approaches targeting cAMP-mediated ciliogenesis pathways are also emerging in preclinical development, offering hope for broader therapeutic coverage across the CEP290 mutation spectrum (corralserrano2023eupatilinimprovescilia pages 3-6).

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  15. (leroy2021lebercongenitalamaurosis pages 5-6): Bart P. Leroy, David G. Birch, Jacque L. Duncan, Byron L. Lam, Robert K. Koenekoop, Fernanda B. O. Porto, Stephen R. Russell, and Aniz Girach. Leber congenital amaurosis due to cep290 mutations—severe vision impairment with a high unmet medical need. Retina, 41(5):898-907, Feb 2021. URL: https://doi.org/10.1097/iae.0000000000003133, doi:10.1097/iae.0000000000003133. This article has 70 citations.

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  18. (ling2023therapeuticgeneediting pages 8-9): Jinjie Ling, Laura A. Jenny, Ashley Z Zhou, and Stephen H. Tsang. Therapeutic gene editing in inherited retinal disorders. Cold Spring Harbor perspectives in medicine, 13:a041292, Sep 2023. URL: https://doi.org/10.1101/cshperspect.a041292, doi:10.1101/cshperspect.a041292. This article has 4 citations and is from a peer-reviewed journal.

  19. (saripalli2026genetherapyand pages 2-4): Karthik Saripalli. Gene therapy and leber congenital amaurosis: a review of treatments and clinical trials. American Journal of Student Research, pages 143-151, Jan 2026. URL: https://doi.org/10.70251/hyjr2348.41143151, doi:10.70251/hyjr2348.41143151. This article has 0 citations.

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  21. (malglaive2023pharmacologicalcampstimulation pages 26-30): France de Malglaive, Iris Barny, Shahd Machroub, Lucas Fares-Taie, Ema Cano, Nicolas Goudin, Tania Attie-Bittach, Josseline Kaplan, Isabelle Perrault, Luis Briseno-Roa, Jean-Michel Rozet, and Jean-Philippe Annereau. Pharmacological camp stimulation via prostaglandin receptors rescues ciliary defects in cep290-deficient human and mouse models. bioRxiv, Oct 2023. URL: https://doi.org/10.1101/2023.10.06.561156, doi:10.1101/2023.10.06.561156. This article has 3 citations.

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