Intellectual Disability, Autosomal Dominant 6

Mendelian MONDO:0013509 Pathograph 22 Show in embeddings browser Neurodevelopmental Disorder Genetic Disease

Intellectual disability, autosomal dominant 6 (MRD6; OMIM 613970) is a rare neurodevelopmental disorder caused by heterozygous, almost always de novo, variants in GRIN2B, which encodes the GluN2B subunit of the N-methyl-D-aspartate (NMDA) glutamate receptor. MRD6 is the non-encephalopathic arm of the GRIN2B allelic series: developmental delay and intellectual disability of variable severity, characteristically with a hyperactive, inattentive, stereotypy-prone behavioral profile, language impairment and hypotonia, with or without seizures — but without the severe early-onset epileptic encephalopathy that defines the allelic sibling entity GRIN2B-related developmental and epileptic encephalopathy (DEE27, OMIM 616139, MONDO:0014505). The mechanistic center of gravity of MRD6 is NMDA receptor hypofunction: deletions, truncating variants and loss-of-function missense variants reduce the pool of functional GluN2B-containing receptors, lowering NMDA-receptor-mediated calcium entry in the developing forebrain during the window in which GluN2B is the dominant NR2 subunit. The resulting deficits in neuronal differentiation, dendrite morphogenesis and activity-dependent synaptic plasticity are the substrate of the cognitive phenotype. This directional leaning is what separates MRD6 from its epileptogenic sibling, where gain-of-function variants are enriched, and it sets the opposite therapeutic direction — receptor-potentiating strategies rather than receptor blockade.

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1
Inheritance
8
Pathophys.
15
Phenotypes
1
Gaps
22
Pathograph
1
Genes
5
Medical Actions
2
Differentials
1
Trials
1
Models
1
References
1
Deep Research
👪

Inheritance

1
Autosomal dominant HP:0000006
MRD6 is inherited in an autosomal dominant manner, but is in practice a sporadic disorder: essentially every molecularly confirmed proband whose parents have been tested carries a de novo GRIN2B variant or deletion, so affected individuals are typically simplex cases with unaffected parents. Residual recurrence risk to sibs reflects the possibility of parental germline mosaicism.
Autosomal dominant inheritance Expressivity: VARIABLE
Show evidence (3 references)
PMID:29851452 SUPPORT Human Clinical
"mild to profound developmental delay / intellectual disability (DD/ID) in all affected individuals"
Supports variable expressivity: severity spans mild to profound among carriers. Penetrance is deliberately left unset — the same sentence shows the phenotype is present in all affected individuals, which is not the same claim as complete penetrance among all variant carriers, and no source consulted quantified penetrance.
PMID:29851452 SUPPORT Human Clinical
"All probands reported to date with a GRIN2B-related neurodevelopmental disorder whose parents have undergone molecular genetic testing have the disorder as a result of a de novo GRIN2B pathogenic variant or deletion."
Establishes the de novo, autosomal dominant origin for the GRIN2B series that MRD6 belongs to.
PMID:20890276 SUPPORT Human Clinical
"Sequencing of GRIN2B in 468 individuals with mental retardation revealed four de novo mutations: a frameshift, a missense and two splice-site mutations."
The founding study identified the causal variants as de novo in an intellectual-disability cohort, which is the MRD6 ascertainment setting.
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Discussions and Knowledge Gaps

1
Is the loss-of-function/gain-of-function axis a reliable partition of the GRIN2B allelic series into the MRD6 and DEE27 clinical entities, or is it a statistical enrichment across one continuum that does not support separate disease entries?
KNOWLEDGE GAP OPEN grin2b_lof_gof_arm_separability
This entry exists as a separate disease on the strength of a directional claim: that the loss-of-function allelic class predominates in the intellectual-disability presentation and the gain-of-function class in the epileptic-encephalopathy presentation. The supporting comparison is recent and self-described as the first of its kind, rests on 55 loss-of-function against 16 gain-of-function patients pooled largely from published case reports, and reports an enrichment rather than a partition — epilepsy occurs in the loss-of-function group too. Functional classification is itself unstable: whether a variant reads as gain- or loss-of-function depends on whether it is assayed in diheteromeric or triheteromeric receptors, so the same allele can change class with the assay. If the separability does not hold up in a larger prospectively phenotyped and uniformly assayed cohort, the correct outcome would be to merge this entry into a single GRIN2B-related neurodevelopmental disorder entry with the two presentations as subtypes.
Proposed experiments
Uniform triheteromeric-assay functional classification against prospective deep phenotyping
exp_grin2b_uniform_assay_phenotype_partition
Assay a large panel of patient GRIN2B variants under a single standardized protocol that includes triheteromeric GluN1/2A/2B receptors, rather than pooling diheteromeric results from heterogeneous sources, and test whether the resulting functional class predicts membership of the intellectual-disability versus epileptic-encephalopathy presentation in prospectively and uniformly phenotyped patients.
Show evidence (1 reference)
PMID:35741674 SUPPORT In Vitro
"thereby influencing the functional classification of NMDA receptor variants as GoF or LoF mutations"
Shows the functional classification that this entry's separability argument depends on is itself assay-dependent, which is the core of the gap.
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Pathophysiology

8
GRIN2B Haploinsufficiency and Loss-of-Function Variation
The initiating lesion is a heterozygous, typically de novo GRIN2B variant that reduces the amount or the function of the GluN2B subunit: whole-gene and exonic 12p13.1 deletions, frameshift, nonsense and splice-site variants acting through haploinsufficiency, and missense variants in the ligand-binding and transmembrane domains that reduce surface expression, agonist potency or channel open probability. Missense variants across the GRIN2B series cluster in exactly those two regions. The loss-of-function-leaning end of this allelic spectrum is the one underrepresented for epilepsy relative to the gain-of-function end; note that the supporting comparison reports an enrichment rather than a partition, so this node does not claim that loss-of-function variants are confined to the ID-without-encephalopathy presentation.
glutamatergic neuron CL:0000679 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves glutamatergic neuron (CL:0000679). CL:0000679 is a cell type from the Cell Ontology.
Genetic context GRIN2B hgnc:4586 HUGO Gene Nomenclature Committee (hgnc) Relation: this genetic context concerns this gene This genetic context concerns GRIN2B (hgnc:4586). hgnc:4586 is a gene from the HUGO Gene Nomenclature Committee. variant_origin: DE_NOVO zygosity: HETEROZYGOUS functional_impact_category: LOSS_OF_FUNCTION
Applies to the deletion, truncating and loss-of-function missense alleles that dominate the MRD6 presentation. GRIN2B is allelic for a gain-of-function class as well; those variants are enriched in the epileptic-encephalopathy sibling entity, so this entry does not claim a single functional mechanism across the whole GRIN2B allelic spectrum.
Show evidence (3 references)
PMID:29937144 SUPPORT In Vitro
"Heterozygous loss-of-function mutations in GRIN2B, a subunit of the NMDA receptor, cause intellectual disability and language impairment."
States the loss-of-function heterozygous lesion and the two core MRD6 manifestations it causes.
PMID:23918416 SUPPORT Human Clinical
"Array-CGH studies revealed overlapping interstitial 12p13.1 microdeletions encompassing all or part of GRIN2B."
Documents whole- or partial-gene deletion as a route to the lesion, the purest available form of GRIN2B haploinsufficiency.
PMID:28377535 SUPPORT Human Clinical
"Missense variants cluster in transmembrane segments and ligand-binding sites."
The canonical 86-patient cohort locating missense variants in the two functional regions this node names.
GluN2B-Containing NMDA Receptor Hypofunction
Reduced NMDA-receptor channel activity at developing glutamatergic synapses, the functional state the loss-of-function allelic classes converge on. GluN2B is the dominant NR2 subunit of the prenatal and early postnatal forebrain, so the deficit falls in the window before the developmental GluN2B-to-GluN2A subunit switch, when the receptor pool cannot be compensated by the mature subunit.
glutamatergic neuron CL:0000679 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves glutamatergic neuron (CL:0000679). CL:0000679 is a cell type from the Cell Ontology.
GluN2B-containing NMDA glutamate receptor activity GO:0004972 Gene Ontology (GO) Relation: this pathophysiological event involves this molecular function This pathophysiological event involves decreased GluN2B-containing NMDA glutamate receptor activity, annotated with NMDA glutamate receptor activity (GO:0004972). GO:0004972 is a molecular function from the Gene Ontology. ↓ DECREASED
Show evidence (1 reference)
PMID:40024627 SUPPORT In Vitro
"administration of spermine potentiated wild-type and loss-of-function (LoF) NMDAR-mediated currents and attenuated synaptic density deficits"
A positive allosteric modulator raises NMDAR-mediated current in loss-of-function receptors and attenuates their synaptic-density deficit. Note the same treatment potentiated wild-type currents too, so this shows the hypofunctional receptor remains pharmacologically addressable rather than being an independent demonstration that it is hypofunctional; the synaptic-density deficit is the loss-of-function-specific part.
Reduced NMDA Receptor-Mediated Calcium Influx
Loss of GluN2B-containing receptor conductance removes the coincidence-detected calcium transient that couples synaptic and extrasynaptic activity to the calcium-dependent signalling machinery of the developing neuron. In GRIN2B disease this calcium deficit is not confined to the mature synapse: NMDA receptors are present on neural progenitor cells, so the signal is already degraded in cells that have not yet differentiated.
glutamatergic neuron CL:0000679 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves glutamatergic neuron (CL:0000679). CL:0000679 is a cell type from the Cell Ontology.
calcium ion transmembrane transport GO:0070588 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased calcium ion transmembrane transport (GO:0070588). GO:0070588 is a biological process from the Gene Ontology. ↓ DECREASED
hippocampal formation UBERON:0002421 Uberon multi-species anatomy ontology (UBERON) Relation: this pathophysiological event occurs in this anatomical location This pathophysiological event occurs in hippocampal formation (UBERON:0002421). UBERON:0002421 is an anatomical location from the Uberon multi-species anatomy ontology.
Show evidence (1 reference)
PMID:29937144 SUPPORT In Vitro
"we demonstrate that NMDA receptors are present on neural progenitor cells and that human mutations in GRIN2B can impair calcium influx and membrane depolarization even in a presumed undifferentiated cell state, highlighting an important role for non-synaptic NMDA receptors"
Establishes the reduced-calcium node in human cells and locates it earlier in development than the synapse, which is the GRIN2B-specific feature of this node.
Impaired Neuronal Differentiation
Loss of the NMDA-receptor calcium signal shifts the developmental program of the neuron: transcriptional profiling of GRIN2B-null and patient-variant human cells shows genes of cell proliferation up and genes of neuron differentiation down. This progenitor-stage arm is what distinguishes the MRD6 mechanism from a purely synaptic account of the disorder.
glutamatergic neuron CL:0000679 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves glutamatergic neuron (CL:0000679). CL:0000679 is a cell type from the Cell Ontology.
neuron differentiation GO:0030182 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased neuron differentiation (GO:0030182). GO:0030182 is a biological process from the Gene Ontology. ↓ DECREASED
Show evidence (1 reference)
PMID:29937144 SUPPORT In Vitro
"Transcriptome analysis revealed extensive increases in genes associated with cell proliferation and decreases in genes associated with neuron differentiation"
Direct transcriptomic measurement of the differentiation deficit in human cells carrying GRIN2B deletion and loss-of-function variants.
Impaired Dendrite Morphogenesis and Synaptogenesis
Abnormal elaboration of the dendritic arbor and abnormal formation of synapses onto it — the structural substrate on which activity-dependent plasticity later operates.
glutamatergic neuron CL:0000679 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves glutamatergic neuron (CL:0000679). CL:0000679 is a cell type from the Cell Ontology.
dendrite morphogenesis GO:0048813 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal dendrite morphogenesis (GO:0048813). GO:0048813 is a biological process from the Gene Ontology. ⚠ ABNORMAL synapse assembly GO:0007416 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal synapse assembly (GO:0007416). GO:0007416 is a biological process from the Gene Ontology. ⚠ ABNORMAL
Show evidence (1 reference)
PMID:36704660 SUPPORT Other
"various GluN2B mutants interfere with neuronal differentiation, dendrite morphogenesis, synaptogenesis, and synaptic plasticity"
A mechanism review synthesizing the dendrite and synaptogenesis arms across multiple disease-associated GluN2B variants.
Impaired Activity-Dependent Synaptic Plasticity
Degraded activity-dependent modification of synaptic strength, evidenced in GRIN2B haploinsufficiency as impaired hippocampal long-term potentiation. Because the lesion is present throughout development, the deficit is built into the circuit as it forms rather than imposed on a mature one.
hippocampal neuron CL:0002608 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hippocampal neuron (CL:0002608). CL:0002608 is a cell type from the Cell Ontology.
regulation of synaptic plasticity GO:0048167 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased regulation of synaptic plasticity (GO:0048167). GO:0048167 is a biological process from the Gene Ontology. ↓ DECREASED long-term synaptic potentiation GO:0060291 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased long-term synaptic potentiation (GO:0060291). GO:0060291 is a biological process from the Gene Ontology. ↓ DECREASED
hippocampal formation UBERON:0002421 Uberon multi-species anatomy ontology (UBERON) Relation: this pathophysiological event occurs in this anatomical location This pathophysiological event occurs in hippocampal formation (UBERON:0002421). UBERON:0002421 is an anatomical location from the Uberon multi-species anatomy ontology.
Show evidence (1 reference)
PMID:40024627 SUPPORT Model Organism
"Chronic spermidine administration in young adult Grin2b+/- mice partially rescued hippocampal long-term potentiation deficits in hippocampal slices of Grin2b+/- mice"
Establishes an LTP deficit in the haploinsufficient mouse and shows it is pharmacologically reversible, which places the plasticity node on the causal path rather than alongside it.
Altered Excitatory Circuit Function
Network-level consequence of building cortical and hippocampal circuits on abnormal NMDA-receptor-dependent excitatory synapses. This node is the common origin of the non-cognitive neuropsychiatric features of MRD6 — the hyperactive, inattentive, stereotypy-prone behavioral profile and disturbed sleep — and of seizures in the subset who have them. It is deliberately named for altered circuit function rather than for excitation-inhibition imbalance: in the loss-of-function arm the primary change is reduced excitatory drive, so a hyperexcitability framing would misstate the direction, and seizures here are a variable feature rather than the defining one.
neuron CL:0000540 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology.
modulation of chemical synaptic transmission GO:0050804 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal modulation of chemical synaptic transmission (GO:0050804). GO:0050804 is a biological process from the Gene Ontology. ⚠ ABNORMAL
Show evidence (1 reference)
PMID:20890276 SUPPORT Human Clinical
"Our findings suggest that disturbances in the neuronal electrophysiological balance during development result in variable neurological phenotypes depending on which NR2 subunit of NMDA receptors is affected."
The founding study's own framing of the step: developmental disturbance of neuronal electrophysiological balance produces the variable neurological phenotypes this node feeds.
Impaired Learning and Memory
The organism-level convergence point of the chain: degraded acquisition and retention, which in MRD6 presents as static, non-degenerative intellectual disability with prominent language impairment rather than as progressive cognitive loss.
learning GO:0007612 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased learning (GO:0007612). GO:0007612 is a biological process from the Gene Ontology. ↓ DECREASED memory GO:0007613 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased memory (GO:0007613). GO:0007613 is a biological process from the Gene Ontology. ↓ DECREASED
Show evidence (1 reference)
PMID:23718928 SUPPORT Human Clinical
"All individuals had mild to severe ID and needed guidance in daily routine."
The human anchor for the outcome node in a series ascertained specifically as MRD6 de novo GRIN2B mutation carriers.
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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence and cross-linked metadata.
Pathograph: causal mechanism network for Intellectual Disability, Autosomal Dominant 6 Interactive directed graph showing how pathophysiology mechanisms, phenotypes, genetic factors and variants, experimental models, environmental triggers, and treatments relate through causal and linked edges.
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Phenotypes

15
Digestive 1
Feeding Difficulties HP:0011968 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Feeding difficulties (HP:0011968). HP:0011968 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:29851452 SUPPORT Human Clinical
"occasionally associated with feeding difficulties"
Feeding difficulties accompany the muscle-tone abnormalities.
Eye 1
Cerebral Visual Impairment HP:0100704 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Cerebral visual impairment (HP:0100704). HP:0100704 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:28377535 SUPPORT Human Clinical
"Patients presented with neurodevelopmental disorders and a spectrum of hypotonia, movement disorder, cortical visual impairment, cerebral volume loss and epilepsy."
Cortical visual impairment is part of the presenting spectrum in the 86-patient cohort.
Head and Neck 1
Mild Facial Dysmorphism Abnormal facial shape HP:0001999 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Abnormal facial shape (HP:0001999). HP:0001999 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:23918416 SUPPORT Human Clinical
"We report on three patients presenting moderate intellectual disability, delayed language acquisition, and mild facial dysmorphia."
Mild facial dysmorphia accompanied intellectual disability in three GRIN2B deletion carriers.
Musculoskeletal 2
Hypotonia VERY_FREQUENT HP:0001252 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Hypotonia (HP:0001252). HP:0001252 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:41146259 SUPPORT Human Clinical
"The predominant phenotypes observed were DD/ID (100%), hypotonia (87.27%), epilepsy (53.08%), and language impairment (45.71%)."
Quantifies hypotonia as a near-universal feature of the pooled GRIN2B series.
Spasticity HP:0001257 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Spasticity (HP:0001257). HP:0001257 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:29851452 SUPPORT Human Clinical
"Muscle tone abnormalities (spasticity and/or hypotonia, occasionally associated with feeding difficulties)"
Spasticity is among the common muscle-tone abnormalities of the GRIN2B series.
Nervous System 10
Intellectual Disability VERY_FREQUENT HP:0001249 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Intellectual disability (HP:0001249). HP:0001249 is a phenotype from the Human Phenotype Ontology.
Show evidence (2 references)
PMID:23718928 SUPPORT Human Clinical
"All individuals had mild to severe ID and needed guidance in daily routine."
Every carrier in a series ascertained as MRD6 had intellectual disability.
PMID:41146259 SUPPORT Human Clinical
"The predominant phenotypes observed were DD/ID (100%), hypotonia (87.27%), epilepsy (53.08%), and language impairment (45.71%)."
Quantifies developmental delay/intellectual disability as universal across the pooled 105-patient GRIN2B series.
Global Developmental Delay VERY_FREQUENT HP:0001263 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Global developmental delay (HP:0001263). HP:0001263 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:29851452 SUPPORT Human Clinical
"GRIN2B-related neurodevelopmental disorder is characterized by mild to profound developmental delay / intellectual disability (DD/ID) in all affected individuals."
Developmental delay is present in all affected individuals across the GRIN2B series.
Language Impairment FREQUENT Delayed speech and language development HP:0000750 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Delayed speech and language development (HP:0000750). HP:0000750 is a phenotype from the Human Phenotype Ontology.
Show evidence (2 references)
PMID:41146259 SUPPORT Human Clinical
"The predominant phenotypes observed were DD/ID (100%), hypotonia (87.27%), epilepsy (53.08%), and language impairment (45.71%)."
Quantifies language impairment in roughly half of the pooled GRIN2B series.
PMID:23918416 SUPPORT Human Clinical
"We report on three patients presenting moderate intellectual disability, delayed language acquisition, and mild facial dysmorphia."
Delayed language acquisition in three GRIN2B deletion carriers, the haploinsufficiency form of MRD6.
Hyperactivity HP:0000752 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Hyperactivity (HP:0000752). HP:0000752 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:23718928 SUPPORT Human Clinical
"They showed characteristic behavior problems with prominent hyperactivity, impulsivity, distractibility and a short attention span."
Standardized behavioral assessment of MRD6 carriers identifies hyperactivity as a characteristic feature.
Short Attention Span HP:0000736 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Short attention span (HP:0000736). HP:0000736 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:23718928 SUPPORT Human Clinical
"prominent hyperactivity, impulsivity, distractibility and a short attention span"
Short attention span is part of the characteristic MRD6 behavioral profile.
Stereotypy Motor stereotypy HP:0000733 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Motor stereotypy (HP:0000733). HP:0000733 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:23718928 SUPPORT Human Clinical
"Stereotypies, sleeping problems and a friendly but boundless social behavior were commonly reported."
Stereotypies are commonly reported in MRD6 carriers.
Sleep Disturbance HP:0002360 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Sleep disturbance (HP:0002360). HP:0002360 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:23718928 SUPPORT Human Clinical
"Stereotypies, sleeping problems and a friendly but boundless social behavior were commonly reported."
Sleeping problems are among the commonly reported MRD6 features.
Autistic Behavior HP:0000729 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Autistic behavior (HP:0000729). HP:0000729 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:29851452 SUPPORT Human Clinical
"autism spectrum disorder (ASD) / behavioral issues, are common."
Autism spectrum disorder and behavioral issues are common in the GRIN2B series.
Seizures HP:0001250 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Seizure (HP:0001250). HP:0001250 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:41146259 SUPPORT Human Clinical
"GOF variants were more likely to cause epilepsy and microcephaly than LOF variants."
Establishes that epilepsy is enriched in the gain-of-function class rather than the loss-of-function class that predominates in MRD6, which is why seizures are a variable rather than defining feature here.
Movement Disorder Hyperkinetic movements HP:0002487 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Hyperkinetic movement disorder, annotated with Hyperkinetic movements (HP:0002487). HP:0002487 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:28377535 SUPPORT Human Clinical
"Patients presented with neurodevelopmental disorders and a spectrum of hypotonia, movement disorder, cortical visual impairment, cerebral volume loss and epilepsy."
Movement disorder is part of the presenting spectrum in the 86-patient cohort.
🧬

Genetic Associations

1
GRIN2B (Causative)
Gene: GRIN2B hgnc:4586 HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is GRIN2B (hgnc:4586). hgnc:4586 is a gene from the HUGO Gene Nomenclature Committee. relationship_type: CAUSATIVE variant_origin: DE_NOVO
Show evidence (2 references)
PMID:20890276 SUPPORT Human Clinical
"Sequencing of GRIN2B in 468 individuals with mental retardation revealed four de novo mutations: a frameshift, a missense and two splice-site mutations."
The founding gene-discovery study, performed in an intellectual-disability cohort, establishing de novo GRIN2B variants as causal.
PMID:41146259 SUPPORT Human Clinical
"Variants located in the transmembrane domain predominantly resulted in a GOF effect."
Locates the gain-of-function class structurally, which is the basis for treating the loss-of-function class as the MRD6-predominant one.
💊

Medical Actions

5
Developmental and Supportive Therapy
Action: supportive careNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is supportive care (NCIT:C15747). NCIT:C15747 is a clinical intervention from the NCI Thesaurus. Ontology label: Supportive Care NCIT:C15747
Platform: Behavioral / lifestyle
Management is symptomatic and multidisciplinary: early intervention, physical and occupational therapy, speech and language therapy, feeding support where hypotonia causes difficulty, and behavioral intervention for the hyperactive, inattentive profile. No disease-modifying therapy is approved.
Show evidence (1 reference)
PMID:29851452 SUPPORT Human Clinical
"DD/ID, muscle tone abnormalities (spasticity, hypotonia, and feeding difficulties), epilepsy, ASD/behavioral issues, movement disorders, and/or cortical visual impairment are treated as per standard practice."
Establishes symptomatic, standard-practice management as the basis of care.
Spermidine Supplementation
Action: PharmacotherapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Pharmacotherapy (NCIT:C15986). NCIT:C15986 is a clinical intervention from the NCI Thesaurus. NCIT:C15986
Agent: spermidine CHEBI:16610 Chemical Entities of Biological Interest (CHEBI) Relation: this treatment uses this therapeutic agent This treatment uses spermidine (CHEBI:16610). CHEBI:16610 is a therapeutic agent from Chemical Entities of Biological Interest.
Platform: Small molecule
An investigational mechanism-directed therapy aimed specifically at the loss-of-function arm. Spermidine is the precursor of spermine, a natural polyamine that acts as a positive allosteric modulator of GluN2B-containing NMDA receptors, so the strategy is to potentiate hypofunctional receptors rather than block them. Preclinical support comes from the haploinsufficient mouse; human experience is limited to two pediatric patients with mild loss-of-function variants followed for 18 months, so this is an early signal and not established therapy.
Mechanism Target:
RESTORES GluN2B-Containing NMDA Receptor Hypofunction — Polyamine positive allosteric modulation raises the deficient NMDAR-mediated current of loss-of-function receptors.
Show evidence (1 reference)
PMID:40024627 SUPPORT Human Clinical
"18 months of spermidine treatment resulted in the amelioration of adaptive behavior (notably in the younger treated patient), with the absence of noticeable side effects."
The human arm of the spermidine study, in two children with GRIN2B loss-of-function variants.
L-Serine Supplementation
Action: PharmacotherapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Pharmacotherapy (NCIT:C15986). NCIT:C15986 is a clinical intervention from the NCI Thesaurus. NCIT:C15986
Agent: L-serine CHEBI:17115 Chemical Entities of Biological Interest (CHEBI) Relation: this treatment uses this therapeutic agent This treatment uses L-serine (CHEBI:17115). CHEBI:17115 is a therapeutic agent from Chemical Entities of Biological Interest.
Platform: Small molecule
The other receptor-potentiating strategy for the loss-of-function arm, and the one with the most human data. L-serine is the precursor of D-serine and glycine, the NMDA-receptor co-agonists, so supplying it aims to raise the occupancy of hypofunctional receptors. A phase 2A open-label trial in children with GRIN loss-of-function variants (NCT04646447) reported improvement across adaptive-behavior, motor and quality-of-life measures. The trial was single-arm and enrolled GRIN1 and GRIN2A alongside GRIN2B variants, so the GRIN2B-specific and placebo-controlled effect is not established.
Mechanism Target:
RESTORES GluN2B-Containing NMDA Receptor Hypofunction — Supplying the co-agonist precursor raises co-agonist site occupancy at hypofunctional NMDA receptors.
Show evidence (1 reference)
PMID:38380699 SUPPORT Human Clinical
"L-serine treatment was associated with significant improvement in the median Gross Motor Function-88 total score (P = 0.002) and the mean Pediatric Quality of Life total score (P = 0.00068), regardless of severity."
The phase 2A trial's positive motor and quality-of-life outcomes in GRIN loss-of-function patients.
Antiseizure Medication
Action: PharmacotherapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Pharmacotherapy (NCIT:C15986). NCIT:C15986 is a clinical intervention from the NCI Thesaurus. NCIT:C15986
Platform: Small molecule
For the subset of individuals who develop seizures, standard antiseizure medication chosen by seizure type. This is symptomatic management rather than mechanism-directed therapy, and seizures are a variable rather than defining feature of MRD6.
Mechanism Target:
INHIBITS Seizures — Symptomatic suppression of seizures in the affected subset.
Show evidence (1 reference)
PMID:29851452 SUPPORT Human Clinical
"epilepsy, ASD/behavioral issues, movement disorders, and/or cortical visual impairment are treated as per standard practice."
Epilepsy in the GRIN2B series is managed symptomatically per standard practice.
Genetic Counseling
Action: Genetic CounselingNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Genetic Counseling (NCIT:C15240). NCIT:C15240 is a clinical intervention from the NCI Thesaurus. NCIT:C15240
Platform: Other
Counseling covers the de novo origin of the variant, the consequently low but non-zero sib recurrence risk arising from possible parental germline mosaicism, and the reproductive options that follow from it.
Show evidence (1 reference)
PMID:29851452 SUPPORT Human Clinical
"All probands reported to date with a GRIN2B-related neurodevelopmental disorder whose parents have undergone molecular genetic testing have the disorder as a result of a de novo GRIN2B pathogenic variant or deletion."
The de novo origin is the fact that determines the recurrence-risk counseling.
🔬

Diagnosis

1
Molecular Genetic Testing
Diagnosis rests on identifying a heterozygous pathogenic GRIN2B variant or an exon or whole-gene deletion, in practice through trio exome or genome sequencing or a neurodevelopmental gene panel. Chromosomal microarray remains necessary to detect the deletion class, which sequence analysis alone can miss. Establishing that the variant is de novo supports pathogenicity.
genetic testing NCIT:C15709 NCI Thesaurus (NCIT)
Show evidence (1 reference)
PMID:29851452 SUPPORT Human Clinical
"identification of either a heterozygous pathogenic variant or exon or whole-gene deletion of GRIN2B on molecular genetic testing."
Defines the molecular diagnostic criteria, including the deletion class that requires copy-number-aware testing.
📊

Prevalence

3
General population, worldwide
Point Prevalence Not yet documented
No general-population prevalence or birth-prevalence figure for MRD6 could be sourced. A modelled birth-incidence estimate for de novo GRIN2B disorder (~5.91 per 100,000 live births) is often quoted from the López-Rivera 2020 incidence catalogue, but that per-gene number lives in a supplementary table and does not appear in the retrievable text of PMID:32168371, so it is deliberately not asserted here. The two records below are diagnostic yields within ascertained clinical cohorts, not population rates, and must not be read as such.
Show evidence (1 reference)
PMID:29851452 SUPPORT Human Clinical
"To date, fewer than 100 individuals with GRIN2B-related neurodevelopmental disorder have been reported."
Fewer than 100 published individuals across the whole GRIN2B series indicates the population rate is undocumented rather than measured, which is what this record asserts.
Individuals with intellectual disability (clinical cohorts)
Point Prevalence 750.0 per 100,000 (500.0–1000.0) Unknown
0.5-1% of individuals with intellectual disability, reported for MRD6 specifically. The rate is expressed against the ID-cohort denominator named in `population`, so it is a diagnostic yield and NOT a general-population prevalence. `prevalence_class` is deliberately UNKNOWN rather than a numeric Orphanet band: those bands are read as general-population rarity tiers, and filling one from a clinic-cohort yield would assert that MRD6 is a common disease by roughly three orders of magnitude.
Show evidence (1 reference)
PMID:23718928 SUPPORT Human Clinical
"Mutations in the GRIN2B gene (MRD6, MIM613970) have been identified as a common cause of ID (prevalence of 0.5 - 1% in individuals with ID)"
States the MRD6 frequency within the intellectual-disability population, naming MRD6 and its OMIM number explicitly rather than the broader GRIN2B series.
Individuals with neurodevelopmental disorders (large diagnostic cohort)
Point Prevalence 200.0 per 100,000 Unknown
Share of a large neurodevelopmental-disorder cohort carrying a likely pathogenic de novo GRIN2B variant. Broader denominator than the ID-cohort figure above and correspondingly lower, and it covers the whole GRIN2B series rather than the MRD6 arm alone. As above, this is a diagnostic yield against the cohort named in `population`, not a population prevalence, so `prevalence_class` is left UNKNOWN.
Show evidence (1 reference)
PMID:36704660 SUPPORT Other
"the prevalence of de novo GRIN2B variants that are likely pathogenic was 0.2%"
Gives the GRIN2B yield in a large neurodevelopmental-disorder cohort.
🔀

Differential Diagnoses

2

Conditions with similar clinical presentations that must be differentiated from Intellectual Disability, Autosomal Dominant 6:

🔬

Clinical Trials

1
NCT04646447 PHASE_II COMPLETED
Phase 2A open-label, single-arm trial of L-serine in children aged 2-18 with GRIN loss-of-function pathogenic variants — the arm of the GRIN allelic series this entry describes. Enrolled GRIN2B, GRIN1 and GRIN2A variants together, so it is a GRIN loss-of-function trial rather than a GRIN2B-specific one.
Target Phenotypes: Intellectual disability HP:0001249 Human Phenotype Ontology (HP) Relation: this clinical trial targets this phenotype This clinical trial targets Intellectual disability (HP:0001249). HP:0001249 is a phenotype from the Human Phenotype Ontology. Hypotonia HP:0001252 Human Phenotype Ontology (HP) Relation: this clinical trial targets this phenotype This clinical trial targets Hypotonia (HP:0001252). HP:0001252 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
clinicaltrials:NCT04646447 SUPPORT Human Clinical
"The investigators will include about 20 spanish patients older than 2 years of age, harbouring GRIN variants functionally anotated as loss-of-function pathogenic variants."
The registration record confirms the trial enrolls functionally annotated loss-of-function GRIN variants, which is the allelic class this entry curates.
🐁

Animal Models

1
Grin2b heterozygous null mouse
A constitutive heterozygous Grin2b null mouse, the genetic counterpart of the haploinsufficiency mechanism that causes MRD6 through deletions and truncating variants. It is the model in which the plasticity deficit and its pharmacological rescue were demonstrated.
Species
Mouse
Genotype
Grin2b+/- (constitutive heterozygous null)
Publication
{ }

Source YAML

click to show
name: Intellectual Disability, Autosomal Dominant 6
creation_date: "2026-09-04T20:55:00Z"
category: Mendelian
synonyms:
- MRD6
- intellectual developmental disorder, autosomal dominant 6, with or without seizures
- mental retardation, autosomal dominant 6
- mental retardation, autosomal dominant 6, with or without seizures
- GRIN2B autosomal dominant non-syndromic intellectual disability
description: >-
  Intellectual disability, autosomal dominant 6 (MRD6; OMIM 613970) is a rare
  neurodevelopmental disorder caused by heterozygous, almost always de novo,
  variants in GRIN2B, which encodes the GluN2B subunit of the
  N-methyl-D-aspartate (NMDA) glutamate receptor. MRD6 is the
  non-encephalopathic arm of the GRIN2B allelic series: developmental delay and
  intellectual disability of variable severity, characteristically with a
  hyperactive, inattentive, stereotypy-prone behavioral profile, language
  impairment and hypotonia, with or without seizures — but without the severe
  early-onset epileptic encephalopathy that defines the allelic sibling entity
  GRIN2B-related developmental and epileptic encephalopathy (DEE27, OMIM
  616139, MONDO:0014505). The mechanistic center of gravity of MRD6 is NMDA
  receptor hypofunction: deletions, truncating variants and loss-of-function
  missense variants reduce the pool of functional GluN2B-containing receptors,
  lowering NMDA-receptor-mediated calcium entry in the developing forebrain
  during the window in which GluN2B is the dominant NR2 subunit. The resulting
  deficits in neuronal differentiation, dendrite morphogenesis and
  activity-dependent synaptic plasticity are the substrate of the cognitive
  phenotype. This directional leaning is what separates MRD6 from its
  epileptogenic sibling, where gain-of-function variants are enriched, and it
  sets the opposite therapeutic direction — receptor-potentiating strategies
  rather than receptor blockade.
disease_term:
  preferred_term: intellectual disability, autosomal dominant 6
  term:
    id: MONDO:0013509
    label: intellectual disability, autosomal dominant 6
parents:
- Neurodevelopmental Disorder
- Genetic Disease
notes: >-
  Scope and lump/split rationale. Much of the recent literature uses the single
  lumping label "GRIN2B-related neurodevelopmental disorder" for the whole
  allelic series, and the MRD6/DEE27 boundary is a spectrum rather than a clean
  partition — many individuals sit between the poles. This entry is nonetheless
  curated as a distinct disease rather than folded into the DEE sibling as a
  subtype, because the two arms are separable on four axes that a subtype record
  could not carry: distinct MONDO terms (MONDO:0013509 vs MONDO:0014505) and
  distinct OMIM phenotype numbers (613970 vs 616139); a distinct clinical
  presentation (ID with variable seizures, without epileptic encephalopathy); a
  directional mechanistic leaning documented by variant-class comparison, where
  gain-of-function variants are more likely to cause epilepsy and microcephaly
  than loss-of-function variants; and an opposite mechanism-directed therapeutic
  direction (receptor potentiation rather than channel blockade). The
  differential_diagnoses block states the boundary explicitly, and the
  grin2b_lof_gof_arm_separability discussion records that the separability itself
  is a recent and still-open claim rather than settled nosology.

  Module conformance is deliberately partial. Four nodes conform to
  nmda_receptor_hypofunction, which the module's own notes sanction ("Conformance
  may be partial"). The module's BDNF arm ("Reduced BDNF Expression and
  Secretion") is not reproduced here: it is evidenced for the toxicant conformers,
  and no GRIN2B-specific evidence for that step was verified during this curation,
  so the chain runs from the calcium node directly to plasticity rather than
  asserting an unsourced intermediate. The trigger node likewise does not declare
  conformance: the module's trigger node describes exogenous routes (toxicant
  antagonism, autoantibody-mediated receptor internalization), whereas the lesion
  here is a germline genetic one, and stretching that node to cover it would
  overstate what the module asserts.

  Where `frequency` is and is not assigned. Frequencies come from series that
  pool both poles of the GRIN2B allelic spectrum, so the question for each
  phenotype is whether the pooled figure transfers to this arm. Developmental
  delay/intellectual disability is set VERY_FREQUENT on the strength of sources
  reporting it in *all* affected individuals, which is pole-independent.
  Hypotonia and language impairment take the pooled figures because no source
  consulted reports them as differing by variant functional class. Seizures
  deliberately carry no `frequency`, because the same comparison that supports
  this entry's existence reports epilepsy as *more likely* in gain-of-function
  than in loss-of-function variants, so the pooled 53% is known not to transfer.
  The rule is "use the pooled figure unless a source shows the feature varies by
  functional class", not an inconsistency between phenotypes.

  Microcephaly and malformation of cortical development are deliberately not
  curated as MRD6 phenotypes. Both are reported in the broader GRIN2B series,
  but microcephaly is one of the two features explicitly reported as enriched in
  the gain-of-function class, and the cortical malformation is described in the
  cohort that defined the encephalopathy end of the spectrum. Asserting either
  as a feature of the loss-of-function arm would import the sibling entity's
  phenotype on a pooled denominator.

  On the "opposite therapeutic direction" axis. The split is real at the level of
  which mechanism a drug is aimed at, but it is not a clean partition of drugs
  across the two entries: the DEE27 sibling carries both the receptor-blocking
  arm and L-serine, because that entry spans both functional classes. What
  selects therapy is the variant's functional class, not the MRD6-versus-DEE27
  label, and a diagnosis of MRD6 does not by itself establish that class.
  Memantine and radiprodil are therefore left to the sibling and to the
  differential-diagnosis block rather than curated as MRD6 treatments: blocking
  an already-hypofunctional receptor is the wrong direction for the arm this
  entry describes.

  Several phenotypes are not wired into the pathograph. Hypotonia, spasticity,
  movement disorder, cerebral visual impairment, feeding difficulties and facial
  dysmorphism carry evidence but no incoming causal edge, because no source
  consulted here places them on a specific chain from the receptor lesion. An
  unconnected phenotype is honest; a fabricated edge is not.
references:
- reference: PMID:29851452
  title: "GRIN2B-Related Neurodevelopmental Disorder."
  tags:
  - GeneReviews
inheritance:
- name: Autosomal dominant
  description: >-
    MRD6 is inherited in an autosomal dominant manner, but is in practice a
    sporadic disorder: essentially every molecularly confirmed proband whose
    parents have been tested carries a de novo GRIN2B variant or deletion, so
    affected individuals are typically simplex cases with unaffected parents.
    Residual recurrence risk to sibs reflects the possibility of parental
    germline mosaicism.
  inheritance_term:
    preferred_term: Autosomal dominant inheritance
    term:
      id: HP:0000006
      label: Autosomal dominant inheritance
  expressivity: VARIABLE
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "mild to profound developmental delay / intellectual disability (DD/ID) in all affected individuals"
    explanation: >-
      Supports variable expressivity: severity spans mild to profound among
      carriers. Penetrance is deliberately left unset — the same sentence shows
      the phenotype is present in all affected individuals, which is not the
      same claim as complete penetrance among all variant carriers, and no
      source consulted quantified penetrance.
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "All probands reported to date with a GRIN2B-related neurodevelopmental disorder whose parents have undergone molecular genetic testing have the disorder as a result of a de novo GRIN2B pathogenic variant or deletion."
    explanation: >-
      Establishes the de novo, autosomal dominant origin for the GRIN2B series
      that MRD6 belongs to.
  - reference: PMID:20890276
    reference_title: "Mutations in GRIN2A and GRIN2B encoding regulatory subunits of NMDA receptors cause variable neurodevelopmental phenotypes."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Sequencing of GRIN2B in 468 individuals with mental retardation revealed four de novo mutations: a frameshift, a missense and two splice-site mutations."
    explanation: >-
      The founding study identified the causal variants as de novo in an
      intellectual-disability cohort, which is the MRD6 ascertainment setting.
pathophysiology:
- name: GRIN2B Haploinsufficiency and Loss-of-Function Variation
  description: >-
    The initiating lesion is a heterozygous, typically de novo GRIN2B variant
    that reduces the amount or the function of the GluN2B subunit: whole-gene and
    exonic 12p13.1 deletions, frameshift, nonsense and splice-site variants
    acting through haploinsufficiency, and missense variants in the
    ligand-binding and transmembrane domains that reduce surface expression,
    agonist potency or channel open probability. Missense variants across the
    GRIN2B series cluster in exactly those two regions. The
    loss-of-function-leaning end of this allelic spectrum is the one
    underrepresented for epilepsy relative to the gain-of-function end; note that the
    supporting comparison reports an enrichment rather than a partition, so this
    node does not claim that loss-of-function variants are confined to the
    ID-without-encephalopathy presentation.
  role: trigger
  biological_scale: MOLECULAR
  genetic_context:
    gene:
      preferred_term: GRIN2B
      term:
        id: hgnc:4586
        label: GRIN2B
    variant_origin: DE_NOVO
    zygosity: HETEROZYGOUS
    functional_impact_category: LOSS_OF_FUNCTION
    description: >-
      Applies to the deletion, truncating and loss-of-function missense alleles
      that dominate the MRD6 presentation. GRIN2B is allelic for a
      gain-of-function class as well; those variants are enriched in the
      epileptic-encephalopathy sibling entity, so this entry does not claim a
      single functional mechanism across the whole GRIN2B allelic spectrum.
  cell_types:
  - preferred_term: glutamatergic neuron
    term:
      id: CL:0000679
      label: glutamatergic neuron
  evidence:
  - reference: PMID:29937144
    reference_title: "Disruption of GRIN2B Impairs Differentiation in Human Neurons."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: "Heterozygous loss-of-function mutations in GRIN2B, a subunit of the NMDA receptor, cause intellectual disability and language impairment."
    explanation: >-
      States the loss-of-function heterozygous lesion and the two core MRD6
      manifestations it causes.
  - reference: PMID:23918416
    reference_title: "Interstitial 12p13.1 deletion involving GRIN2B in three patients with intellectual disability."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Array-CGH studies revealed overlapping interstitial 12p13.1 microdeletions encompassing all or part of GRIN2B."
    explanation: >-
      Documents whole- or partial-gene deletion as a route to the lesion, the
      purest available form of GRIN2B haploinsufficiency.
  - reference: PMID:28377535
    reference_title: "GRIN2B encephalopathy: novel findings on phenotype, variant clustering, functional consequences and treatment aspects."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Missense variants cluster in transmembrane segments and ligand-binding sites."
    explanation: >-
      The canonical 86-patient cohort locating missense variants in the two
      functional regions this node names.
  downstream:
  - target: GluN2B-Containing NMDA Receptor Hypofunction
    causal_link_type: DIRECT
    description: >-
      Reduced GluN2B dosage or function lowers the pool of functional
      GluN2B-containing NMDA receptors available at developing synapses.
    evidence:
    - reference: PMID:35741674
      reference_title: "Synaptic Dysfunction by Mutations in GRIN2B: Influence of Triheteromeric NMDA Receptors on Gain-of-Function and Loss-of-Function Mutant Classification"
      supports: SUPPORT
      directness: INDIRECT
      evidence_source: IN_VITRO
      snippet: "In the absence of both native GluN2A and GluN2B subunits, functional incorporation into synaptic NMDA receptors was attenuated for GoF mutants, or almost eliminated for LoF GluN2B mutants."
      explanation: >-
        Loss-of-function GluN2B mutants are nearly excluded from synaptic
        receptors, which is a route by which the variant depletes the functional
        receptor pool. Graded INDIRECT because the measurement was made in a
        GluN2A/GluN2B double-null background rather than in the heterozygous
        state of the disease; the same study's countervailing result is recorded
        as the next evidence item.
    - reference: PMID:35741674
      reference_title: "Synaptic Dysfunction by Mutations in GRIN2B: Influence of Triheteromeric NMDA Receptors on Gain-of-Function and Loss-of-Function Mutant Classification"
      supports: REFUTE
      evidence_source: IN_VITRO
      snippet: "Finally, we show that having a single null Grin2b allele has only a modest effect on NMDA-EPSC decay kinetics."
      explanation: >-
        Cuts against a simple dosage account of this edge: in the heterozygous
        single-null state that actually models the disease, the effect on
        NMDA-EPSC decay is modest. Recorded rather than omitted because it
        constrains how strongly haploinsufficiency alone can be claimed to
        deplete synaptic receptor function.
- name: GluN2B-Containing NMDA Receptor Hypofunction
  description: >-
    Reduced NMDA-receptor channel activity at developing glutamatergic synapses,
    the functional state the loss-of-function allelic classes converge on. GluN2B
    is the dominant NR2 subunit of the prenatal and early postnatal forebrain, so
    the deficit falls in the window before the developmental GluN2B-to-GluN2A
    subunit switch, when the receptor pool cannot be compensated by the mature
    subunit.
  role: amplifier
  biological_scale: MOLECULAR
  conforms_to: "nmda_receptor_hypofunction#NMDA Receptor Hypofunction"
  cell_types:
  - preferred_term: glutamatergic neuron
    term:
      id: CL:0000679
      label: glutamatergic neuron
  molecular_functions:
  - preferred_term: GluN2B-containing NMDA glutamate receptor activity
    term:
      id: GO:0004972
      label: NMDA glutamate receptor activity
    modifier: DECREASED
  evidence:
  - reference: PMID:40024627
    reference_title: "Spermidine Treatment Improves GRIN2B Loss-Of-Function, A Primary Disorder of Glutamatergic Neurotransmission."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: "administration of spermine potentiated wild-type and loss-of-function (LoF) NMDAR-mediated currents and attenuated synaptic density deficits"
    explanation: >-
      A positive allosteric modulator raises NMDAR-mediated current in
      loss-of-function receptors and attenuates their synaptic-density deficit.
      Note the same treatment potentiated wild-type currents too, so this shows
      the hypofunctional receptor remains pharmacologically addressable rather
      than being an independent demonstration that it is hypofunctional; the
      synaptic-density deficit is the loss-of-function-specific part.
  downstream:
  - target: Reduced NMDA Receptor-Mediated Calcium Influx
    causal_link_type: DIRECT
    description: >-
      The NMDA receptor is the principal activity-gated calcium-permeable channel
      at the excitatory synapse, so reduced channel activity translates into
      reduced calcium entry.
    evidence:
    - reference: PMID:29937144
      reference_title: "Disruption of GRIN2B Impairs Differentiation in Human Neurons."
      supports: SUPPORT
      evidence_source: IN_VITRO
      snippet: "human mutations in GRIN2B can impair calcium influx and membrane depolarization even in a presumed undifferentiated cell state"
      explanation: >-
        Directly measures reduced calcium influx as the consequence of the
        GRIN2B lesion in human cells.
- name: Reduced NMDA Receptor-Mediated Calcium Influx
  description: >-
    Loss of GluN2B-containing receptor conductance removes the coincidence-detected
    calcium transient that couples synaptic and extrasynaptic activity to the
    calcium-dependent signalling machinery of the developing neuron. In GRIN2B
    disease this calcium deficit is not confined to the mature synapse: NMDA
    receptors are present on neural progenitor cells, so the signal is already
    degraded in cells that have not yet differentiated.
  role: central_effector
  biological_scale: CELLULAR
  conforms_to: "nmda_receptor_hypofunction#Reduced NMDA Receptor-Mediated Calcium Influx"
  cell_types:
  - preferred_term: glutamatergic neuron
    term:
      id: CL:0000679
      label: glutamatergic neuron
  biological_processes:
  - preferred_term: calcium ion transmembrane transport
    term:
      id: GO:0070588
      label: calcium ion transmembrane transport
    modifier: DECREASED
  locations:
  - preferred_term: hippocampal formation
    term:
      id: UBERON:0002421
      label: hippocampal formation
  evidence:
  - reference: PMID:29937144
    reference_title: "Disruption of GRIN2B Impairs Differentiation in Human Neurons."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: "we demonstrate that NMDA receptors are present on neural progenitor cells and that human mutations in GRIN2B can impair calcium influx and membrane depolarization even in a presumed undifferentiated cell state, highlighting an important role for non-synaptic NMDA receptors"
    explanation: >-
      Establishes the reduced-calcium node in human cells and locates it earlier
      in development than the synapse, which is the GRIN2B-specific feature of
      this node.
  downstream:
  - target: Impaired Neuronal Differentiation
    causal_link_type: DIRECT
    description: >-
      NMDA-receptor-dependent calcium signalling in progenitors and immature
      neurons drives the transition out of proliferation and into differentiation.
    evidence:
    - reference: PMID:36704660
      reference_title: "GRIN2B-related neurodevelopmental disorder: current understanding of pathophysiological mechanisms."
      supports: SUPPORT
      evidence_source: OTHER
      snippet: "all mutants interfered with calcium influx through NMDARs"
      explanation: >-
        The review attributes the differentiation deficit to interference with
        NMDAR calcium influx shared across the variant panel.
  - target: Impaired Activity-Dependent Synaptic Plasticity
    causal_link_type: DIRECT
    description: >-
      The calcium transient is the trigger for the calcium-dependent cascades that
      implement activity-dependent changes in synaptic strength. Note this edge
      short-cuts the BDNF intermediate that the nmda_receptor_hypofunction module
      places between these two nodes; that step is not reproduced here because no
      GRIN2B-specific evidence for it was verified.
    evidence:
    - reference: PMID:36704660
      reference_title: "GRIN2B-related neurodevelopmental disorder: current understanding of pathophysiological mechanisms."
      supports: SUPPORT
      evidence_source: OTHER
      snippet: "various GluN2B mutants interfere with neuronal differentiation, dendrite morphogenesis, synaptogenesis, and synaptic plasticity"
      explanation: >-
        Places synaptic plasticity among the processes disrupted downstream of
        the GluN2B lesion, which is the claim this edge makes.
- name: Impaired Neuronal Differentiation
  description: >-
    Loss of the NMDA-receptor calcium signal shifts the developmental program of
    the neuron: transcriptional profiling of GRIN2B-null and patient-variant human
    cells shows genes of cell proliferation up and genes of neuron differentiation
    down. This progenitor-stage arm is what distinguishes the MRD6 mechanism from
    a purely synaptic account of the disorder.
  role: effector
  biological_scale: CELLULAR
  cell_types:
  - preferred_term: glutamatergic neuron
    term:
      id: CL:0000679
      label: glutamatergic neuron
  biological_processes:
  - preferred_term: neuron differentiation
    term:
      id: GO:0030182
      label: neuron differentiation
    modifier: DECREASED
  evidence:
  - reference: PMID:29937144
    reference_title: "Disruption of GRIN2B Impairs Differentiation in Human Neurons."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: "Transcriptome analysis revealed extensive increases in genes associated with cell proliferation and decreases in genes associated with neuron differentiation"
    explanation: >-
      Direct transcriptomic measurement of the differentiation deficit in human
      cells carrying GRIN2B deletion and loss-of-function variants.
  downstream:
  - target: Impaired Dendrite Morphogenesis and Synaptogenesis
    causal_link_type: DIRECT
    description: >-
      Neurons that differentiate abnormally go on to elaborate abnormal
      dendritic arbors and form synapses abnormally.
    evidence:
    - reference: PMID:36704660
      reference_title: "GRIN2B-related neurodevelopmental disorder: current understanding of pathophysiological mechanisms."
      supports: SUPPORT
      evidence_source: OTHER
      snippet: "These data provide compelling evidence that various GluN2B mutants interfere with neuronal differentiation, dendrite morphogenesis, synaptogenesis, and synaptic plasticity."
      explanation: >-
        The review places differentiation, dendrite morphogenesis and
        synaptogenesis on one chain of consequences of the same variants.
- name: Impaired Dendrite Morphogenesis and Synaptogenesis
  description: >-
    Abnormal elaboration of the dendritic arbor and abnormal formation of
    synapses onto it — the structural substrate on which activity-dependent
    plasticity later operates.
  role: effector
  biological_scale: CELLULAR
  cell_types:
  - preferred_term: glutamatergic neuron
    term:
      id: CL:0000679
      label: glutamatergic neuron
  biological_processes:
  - preferred_term: dendrite morphogenesis
    term:
      id: GO:0048813
      label: dendrite morphogenesis
    modifier: ABNORMAL
  - preferred_term: synapse assembly
    term:
      id: GO:0007416
      label: synapse assembly
    modifier: ABNORMAL
  evidence:
  - reference: PMID:36704660
    reference_title: "GRIN2B-related neurodevelopmental disorder: current understanding of pathophysiological mechanisms."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "various GluN2B mutants interfere with neuronal differentiation, dendrite morphogenesis, synaptogenesis, and synaptic plasticity"
    explanation: >-
      A mechanism review synthesizing the dendrite and synaptogenesis arms
      across multiple disease-associated GluN2B variants.
  downstream:
  - target: Impaired Activity-Dependent Synaptic Plasticity
    causal_link_type: DIRECT
    description: >-
      An abnormally built dendritic and synaptic substrate degrades the
      activity-dependent plasticity that operates on it.
- name: Impaired Activity-Dependent Synaptic Plasticity
  description: >-
    Degraded activity-dependent modification of synaptic strength, evidenced in
    GRIN2B haploinsufficiency as impaired hippocampal long-term potentiation.
    Because the lesion is present throughout development, the deficit is built
    into the circuit as it forms rather than imposed on a mature one.
  role: effector
  biological_scale: CELLULAR
  conforms_to: "nmda_receptor_hypofunction#Impaired Activity-Dependent Synaptic Plasticity"
  cell_types:
  - preferred_term: hippocampal neuron
    term:
      id: CL:0002608
      label: hippocampal neuron
  biological_processes:
  - preferred_term: regulation of synaptic plasticity
    term:
      id: GO:0048167
      label: regulation of synaptic plasticity
    modifier: DECREASED
  - preferred_term: long-term synaptic potentiation
    term:
      id: GO:0060291
      label: long-term synaptic potentiation
    modifier: DECREASED
  locations:
  - preferred_term: hippocampal formation
    term:
      id: UBERON:0002421
      label: hippocampal formation
  evidence:
  - reference: PMID:40024627
    reference_title: "Spermidine Treatment Improves GRIN2B Loss-Of-Function, A Primary Disorder of Glutamatergic Neurotransmission."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: "Chronic spermidine administration in young adult Grin2b+/- mice partially rescued hippocampal long-term potentiation deficits in hippocampal slices of Grin2b+/- mice"
    explanation: >-
      Establishes an LTP deficit in the haploinsufficient mouse and shows it is
      pharmacologically reversible, which places the plasticity node on the
      causal path rather than alongside it.
  downstream:
  - target: Impaired Learning and Memory
    causal_link_type: DIRECT
    description: >-
      Hippocampal and cortical plasticity is the cellular substrate of learning,
      so a developmental plasticity deficit presents as a cognitive deficit.
  - target: Altered Excitatory Circuit Function
    causal_link_type: DIRECT
    description: >-
      Synapses that form and adapt abnormally assemble into cortical circuits
      whose excitatory drive and regulation are correspondingly altered.
- name: Altered Excitatory Circuit Function
  description: >-
    Network-level consequence of building cortical and hippocampal circuits on
    abnormal NMDA-receptor-dependent excitatory synapses. This node is the
    common origin of the non-cognitive neuropsychiatric features of MRD6 — the
    hyperactive, inattentive, stereotypy-prone behavioral profile and disturbed
    sleep — and of seizures in the subset who have them. It is deliberately
    named for altered circuit function rather than for excitation-inhibition
    imbalance: in the loss-of-function arm the primary change is reduced
    excitatory drive, so a hyperexcitability framing would misstate the
    direction, and seizures here are a variable feature rather than the
    defining one.
  role: effector
  biological_scale: TISSUE
  cell_types:
  - preferred_term: neuron
    term:
      id: CL:0000540
      label: neuron
  biological_processes:
  - preferred_term: modulation of chemical synaptic transmission
    term:
      id: GO:0050804
      label: modulation of chemical synaptic transmission
    modifier: ABNORMAL
  evidence:
  - reference: PMID:20890276
    reference_title: "Mutations in GRIN2A and GRIN2B encoding regulatory subunits of NMDA receptors cause variable neurodevelopmental phenotypes."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Our findings suggest that disturbances in the neuronal electrophysiological balance during development result in variable neurological phenotypes depending on which NR2 subunit of NMDA receptors is affected."
    explanation: >-
      The founding study's own framing of the step: developmental disturbance of
      neuronal electrophysiological balance produces the variable neurological
      phenotypes this node feeds.
  downstream:
  - target: Seizures
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
    description: >-
      In the subset who develop epilepsy, altered excitatory circuit function is
      the substrate of seizure generation.
  - target: Hyperactivity
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
  - target: Short Attention Span
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
  - target: Stereotypy
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
  - target: Sleep Disturbance
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
  - target: Autistic Behavior
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
- name: Impaired Learning and Memory
  description: >-
    The organism-level convergence point of the chain: degraded acquisition and
    retention, which in MRD6 presents as static, non-degenerative intellectual
    disability with prominent language impairment rather than as progressive
    cognitive loss.
  role: consequence
  biological_scale: ORGANISM
  conforms_to: "nmda_receptor_hypofunction#Learning and Memory Impairment"
  biological_processes:
  - preferred_term: learning
    term:
      id: GO:0007612
      label: learning
    modifier: DECREASED
  - preferred_term: memory
    term:
      id: GO:0007613
      label: memory
    modifier: DECREASED
  evidence:
  - reference: PMID:23718928
    reference_title: "Behavioral phenotype in five individuals with de novo mutations within the GRIN2B gene."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "All individuals had mild to severe ID and needed guidance in daily routine."
    explanation: >-
      The human anchor for the outcome node in a series ascertained specifically
      as MRD6 de novo GRIN2B mutation carriers.
  downstream:
  - target: Intellectual Disability
    causal_link_type: DIRECT
  - target: Global Developmental Delay
    causal_link_type: DIRECT
  - target: Language Impairment
    causal_link_type: DIRECT
phenotypes:
- category: Neurodevelopmental
  name: Intellectual Disability
  description: >-
    Intellectual disability is present in every affected individual, ranging from
    mild to profound. Severity is the principal determinant of functional outcome
    and of caregiver burden.
  frequency: VERY_FREQUENT
  phenotype_term:
    preferred_term: Intellectual disability
    term:
      id: HP:0001249
      label: Intellectual disability
  evidence:
  - reference: PMID:23718928
    reference_title: "Behavioral phenotype in five individuals with de novo mutations within the GRIN2B gene."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "All individuals had mild to severe ID and needed guidance in daily routine."
    explanation: >-
      Every carrier in a series ascertained as MRD6 had intellectual disability.
  - reference: PMID:41146259
    reference_title: "GRIN2B-related neurodevelopmental disorders: genotype-phenotype correlations and therapeutic implications."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "The predominant phenotypes observed were DD/ID (100%), hypotonia (87.27%), epilepsy (53.08%), and language impairment (45.71%)."
    explanation: >-
      Quantifies developmental delay/intellectual disability as universal across
      the pooled 105-patient GRIN2B series.
- category: Neurodevelopmental
  name: Global Developmental Delay
  description: >-
    Global developmental delay is apparent in infancy, typically before the
    disorder is molecularly diagnosed, and is non-degenerative: the course is
    static rather than regressive in the large majority.
  frequency: VERY_FREQUENT
  phenotype_term:
    preferred_term: Global developmental delay
    term:
      id: HP:0001263
      label: Global developmental delay
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "GRIN2B-related neurodevelopmental disorder is characterized by mild to profound developmental delay / intellectual disability (DD/ID) in all affected individuals."
    explanation: >-
      Developmental delay is present in all affected individuals across the
      GRIN2B series.
- category: Neurodevelopmental
  name: Language Impairment
  description: >-
    Delayed and limited expressive language is a characteristic and
    disproportionately prominent feature, reported both as delayed language
    acquisition in deletion carriers and as a distinct language impairment in
    loss-of-function cases. Speech is absent in the most severely affected.
  frequency: FREQUENT
  phenotype_term:
    preferred_term: Delayed speech and language development
    term:
      id: HP:0000750
      label: Delayed speech and language development
  evidence:
  - reference: PMID:41146259
    reference_title: "GRIN2B-related neurodevelopmental disorders: genotype-phenotype correlations and therapeutic implications."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "The predominant phenotypes observed were DD/ID (100%), hypotonia (87.27%), epilepsy (53.08%), and language impairment (45.71%)."
    explanation: >-
      Quantifies language impairment in roughly half of the pooled GRIN2B series.
  - reference: PMID:23918416
    reference_title: "Interstitial 12p13.1 deletion involving GRIN2B in three patients with intellectual disability."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "We report on three patients presenting moderate intellectual disability, delayed language acquisition, and mild facial dysmorphia."
    explanation: >-
      Delayed language acquisition in three GRIN2B deletion carriers, the
      haploinsufficiency form of MRD6.
- category: Neurologic
  name: Hypotonia
  description: >-
    Muscular hypotonia is usually evident in the neonatal or infantile period and
    often persists, contributing to delayed motor milestones and, in a subset, to
    feeding difficulty.
  frequency: VERY_FREQUENT
  phenotype_term:
    preferred_term: Hypotonia
    term:
      id: HP:0001252
      label: Hypotonia
  evidence:
  - reference: PMID:41146259
    reference_title: "GRIN2B-related neurodevelopmental disorders: genotype-phenotype correlations and therapeutic implications."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "The predominant phenotypes observed were DD/ID (100%), hypotonia (87.27%), epilepsy (53.08%), and language impairment (45.71%)."
    explanation: >-
      Quantifies hypotonia as a near-universal feature of the pooled GRIN2B
      series.
- category: Behavioral
  name: Hyperactivity
  description: >-
    Prominent hyperactivity and impulsivity dominate the behavioral profile of
    MRD6 and are, alongside inattention, the features most often reported as
    driving day-to-day management difficulty.
  phenotype_term:
    preferred_term: Hyperactivity
    term:
      id: HP:0000752
      label: Hyperactivity
  evidence:
  - reference: PMID:23718928
    reference_title: "Behavioral phenotype in five individuals with de novo mutations within the GRIN2B gene."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "They showed characteristic behavior problems with prominent hyperactivity, impulsivity, distractibility and a short attention span."
    explanation: >-
      Standardized behavioral assessment of MRD6 carriers identifies
      hyperactivity as a characteristic feature.
- category: Behavioral
  name: Short Attention Span
  description: >-
    Distractibility and a short attention span are consistently reported on
    standardized parent and teacher behavioral rating scales.
  phenotype_term:
    preferred_term: Short attention span
    term:
      id: HP:0000736
      label: Short attention span
  evidence:
  - reference: PMID:23718928
    reference_title: "Behavioral phenotype in five individuals with de novo mutations within the GRIN2B gene."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "prominent hyperactivity, impulsivity, distractibility and a short attention span"
    explanation: >-
      Short attention span is part of the characteristic MRD6 behavioral profile.
- category: Behavioral
  name: Stereotypy
  description: >-
    Stereotyped, repetitive movements are commonly reported, part of a behavioral
    profile that overlaps autism spectrum presentations without always meeting
    criteria for them.
  phenotype_term:
    preferred_term: Motor stereotypy
    term:
      id: HP:0000733
      label: Motor stereotypy
  evidence:
  - reference: PMID:23718928
    reference_title: "Behavioral phenotype in five individuals with de novo mutations within the GRIN2B gene."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Stereotypies, sleeping problems and a friendly but boundless social behavior were commonly reported."
    explanation: >-
      Stereotypies are commonly reported in MRD6 carriers.
- category: Behavioral
  name: Sleep Disturbance
  description: >-
    Sleeping problems are commonly reported by caregivers and add materially to
    family burden.
  phenotype_term:
    preferred_term: Sleep disturbance
    term:
      id: HP:0002360
      label: Sleep disturbance
  evidence:
  - reference: PMID:23718928
    reference_title: "Behavioral phenotype in five individuals with de novo mutations within the GRIN2B gene."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Stereotypies, sleeping problems and a friendly but boundless social behavior were commonly reported."
    explanation: >-
      Sleeping problems are among the commonly reported MRD6 features.
- category: Neurodevelopmental
  name: Autistic Behavior
  description: >-
    Autism spectrum features and behavioral abnormalities occur in a substantial
    minority. Notably, the MRD6 social profile is often described as friendly and
    socially disinhibited rather than socially withdrawn, which distinguishes it
    from many other syndromic autism presentations.
  phenotype_term:
    preferred_term: Autistic behavior
    term:
      id: HP:0000729
      label: Autistic behavior
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "autism spectrum disorder (ASD) / behavioral issues, are common."
    explanation: >-
      Autism spectrum disorder and behavioral issues are common in the GRIN2B
      series.
- category: Neurologic
  name: Seizures
  description: >-
    Seizures occur in some but not all individuals — MRD6 is explicitly named
    "with or without seizures". Where present they are ordinary epilepsy rather
    than the early-onset epileptic encephalopathy of the allelic DEE27 sibling,
    and epilepsy is comparatively less frequent in the loss-of-function allelic
    class that predominates in MRD6. Frequency is deliberately left unset: the
    published percentages come from mixed GRIN2B series spanning both poles of
    the allelic series and would misstate the rate for this arm.
  phenotype_term:
    preferred_term: Seizure
    term:
      id: HP:0001250
      label: Seizure
  evidence:
  - reference: PMID:41146259
    reference_title: "GRIN2B-related neurodevelopmental disorders: genotype-phenotype correlations and therapeutic implications."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "GOF variants were more likely to cause epilepsy and microcephaly than LOF variants."
    explanation: >-
      Establishes that epilepsy is enriched in the gain-of-function class rather
      than the loss-of-function class that predominates in MRD6, which is why
      seizures are a variable rather than defining feature here.
- category: Neurologic
  name: Movement Disorder
  description: >-
    A hyperkinetic movement disorder — dystonic, dyskinetic or choreiform — is
    part of the reported GRIN2B phenotype spectrum, and is one of the features
    reported as more severe in loss-of-function missense than in
    loss-of-function truncating variants.
  phenotype_term:
    preferred_term: Hyperkinetic movement disorder
    term:
      id: HP:0002487
      label: Hyperkinetic movements
  evidence:
  - reference: PMID:28377535
    reference_title: "GRIN2B encephalopathy: novel findings on phenotype, variant clustering, functional consequences and treatment aspects."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Patients presented with neurodevelopmental disorders and a spectrum of hypotonia, movement disorder, cortical visual impairment, cerebral volume loss and epilepsy."
    explanation: >-
      Movement disorder is part of the presenting spectrum in the 86-patient
      cohort.
- category: Ophthalmologic
  name: Cerebral Visual Impairment
  description: >-
    Cortical/cerebral visual impairment occurs in a subset. The lesion is
    cortical; the eyes are structurally normal, so this is not an ophthalmologic
    abnormality in the usual sense.
  phenotype_term:
    preferred_term: Cerebral visual impairment
    term:
      id: HP:0100704
      label: Cerebral visual impairment
  evidence:
  - reference: PMID:28377535
    reference_title: "GRIN2B encephalopathy: novel findings on phenotype, variant clustering, functional consequences and treatment aspects."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Patients presented with neurodevelopmental disorders and a spectrum of hypotonia, movement disorder, cortical visual impairment, cerebral volume loss and epilepsy."
    explanation: >-
      Cortical visual impairment is part of the presenting spectrum in the
      86-patient cohort.
- category: Neurologic
  name: Spasticity
  description: >-
    Spasticity occurs alongside or instead of hypotonia among the muscle-tone
    abnormalities, and is reported predominantly in the more severely affected.
  phenotype_term:
    preferred_term: Spasticity
    term:
      id: HP:0001257
      label: Spasticity
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Muscle tone abnormalities (spasticity and/or hypotonia, occasionally associated with feeding difficulties)"
    explanation: >-
      Spasticity is among the common muscle-tone abnormalities of the GRIN2B
      series.
- category: Gastrointestinal
  name: Feeding Difficulties
  description: >-
    Feeding difficulties occur in association with the muscle-tone
    abnormalities, occasionally requiring tube feeding.
  phenotype_term:
    preferred_term: Feeding difficulties
    term:
      id: HP:0011968
      label: Feeding difficulties
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "occasionally associated with feeding difficulties"
    explanation: >-
      Feeding difficulties accompany the muscle-tone abnormalities.
- category: Craniofacial
  name: Mild Facial Dysmorphism
  description: >-
    Mild, non-specific facial dysmorphic features have been described in
    GRIN2B deletion carriers. There is no recognizable gestalt, and MRD6 is not
    diagnosable on facial features.
  phenotype_term:
    preferred_term: Abnormal facial shape
    term:
      id: HP:0001999
      label: Abnormal facial shape
  evidence:
  - reference: PMID:23918416
    reference_title: "Interstitial 12p13.1 deletion involving GRIN2B in three patients with intellectual disability."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "We report on three patients presenting moderate intellectual disability, delayed language acquisition, and mild facial dysmorphia."
    explanation: >-
      Mild facial dysmorphia accompanied intellectual disability in three GRIN2B
      deletion carriers.
genetic:
- name: GRIN2B
  association: Causative
  relationship_type: CAUSATIVE
  variant_origin: DE_NOVO
  gene_term:
    preferred_term: GRIN2B
    term:
      id: hgnc:4586
      label: GRIN2B
  notes: >-
    GRIN2B (12p13.1) encodes the GluN2B subunit of the NMDA receptor. In MRD6 the
    causal alleles are heterozygous and typically de novo, and the mechanism
    leans loss-of-function: exonic and whole-gene deletions and truncating
    variants act through haploinsufficiency, while missense variants in the
    ligand-binding and transmembrane domains reduce surface expression, agonist
    potency or open probability. Gain-of-function missense alleles at the same
    locus are enriched in the allelic epileptic-encephalopathy entity rather than
    in MRD6. Variant-level functional classification is not available for most
    reported variants, so this entry records the functional impact at the
    allelic-class level rather than asserting it variant by variant.
  evidence:
  - reference: PMID:20890276
    reference_title: "Mutations in GRIN2A and GRIN2B encoding regulatory subunits of NMDA receptors cause variable neurodevelopmental phenotypes."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Sequencing of GRIN2B in 468 individuals with mental retardation revealed four de novo mutations: a frameshift, a missense and two splice-site mutations."
    explanation: >-
      The founding gene-discovery study, performed in an intellectual-disability
      cohort, establishing de novo GRIN2B variants as causal.
  - reference: PMID:41146259
    reference_title: "GRIN2B-related neurodevelopmental disorders: genotype-phenotype correlations and therapeutic implications."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Variants located in the transmembrane domain predominantly resulted in a GOF effect."
    explanation: >-
      Locates the gain-of-function class structurally, which is the basis for
      treating the loss-of-function class as the MRD6-predominant one.
prevalence:
- population: General population, worldwide
  measure_type: POINT_PREVALENCE
  prevalence_class: NOT_YET_DOCUMENTED
  notes: >-
    No general-population prevalence or birth-prevalence figure for MRD6 could
    be sourced. A modelled birth-incidence estimate for de novo GRIN2B disorder
    (~5.91 per 100,000 live births) is often quoted from the López-Rivera 2020
    incidence catalogue, but that per-gene number lives in a supplementary table
    and does not appear in the retrievable text of PMID:32168371, so it is
    deliberately not asserted here. The two records below are diagnostic yields
    within ascertained clinical cohorts, not population rates, and must not be
    read as such.
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "To date, fewer than 100 individuals with GRIN2B-related neurodevelopmental disorder have been reported."
    explanation: >-
      Fewer than 100 published individuals across the whole GRIN2B series
      indicates the population rate is undocumented rather than measured, which
      is what this record asserts.
- population: Individuals with intellectual disability (clinical cohorts)
  measure_type: POINT_PREVALENCE
  prevalence_class: UNKNOWN
  rate_per_100000: 750.0
  rate_low: 500.0
  rate_high: 1000.0
  notes: >-
    0.5-1% of individuals with intellectual disability, reported for MRD6
    specifically. The rate is expressed against the ID-cohort denominator named
    in `population`, so it is a diagnostic yield and NOT a general-population
    prevalence. `prevalence_class` is deliberately UNKNOWN rather than a numeric
    Orphanet band: those bands are read as general-population rarity tiers, and
    filling one from a clinic-cohort yield would assert that MRD6 is a common
    disease by roughly three orders of magnitude.
  evidence:
  - reference: PMID:23718928
    reference_title: "Behavioral phenotype in five individuals with de novo mutations within the GRIN2B gene."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Mutations in the GRIN2B gene (MRD6, MIM613970) have been identified as a common cause of ID (prevalence of 0.5 - 1% in individuals with ID)"
    explanation: >-
      States the MRD6 frequency within the intellectual-disability population,
      naming MRD6 and its OMIM number explicitly rather than the broader GRIN2B
      series.
- population: Individuals with neurodevelopmental disorders (large diagnostic cohort)
  measure_type: POINT_PREVALENCE
  prevalence_class: UNKNOWN
  rate_per_100000: 200.0
  notes: >-
    Share of a large neurodevelopmental-disorder cohort carrying a likely
    pathogenic de novo GRIN2B variant. Broader denominator than the ID-cohort
    figure above and correspondingly lower, and it covers the whole GRIN2B
    series rather than the MRD6 arm alone. As above, this is a diagnostic yield
    against the cohort named in `population`, not a population prevalence, so
    `prevalence_class` is left UNKNOWN.
  evidence:
  - reference: PMID:36704660
    reference_title: "GRIN2B-related neurodevelopmental disorder: current understanding of pathophysiological mechanisms."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "the prevalence of de novo GRIN2B variants that are likely pathogenic was 0.2%"
    explanation: >-
      Gives the GRIN2B yield in a large neurodevelopmental-disorder cohort.
animal_models:
- name: Grin2b heterozygous null mouse
  species: Mouse
  genotype: Grin2b+/- (constitutive heterozygous null)
  publication: PMID:40024627
  description: >-
    A constitutive heterozygous Grin2b null mouse, the genetic counterpart of the
    haploinsufficiency mechanism that causes MRD6 through deletions and truncating
    variants. It is the model in which the plasticity deficit and its
    pharmacological rescue were demonstrated.
  modeled_mechanisms:
  - target: Impaired Activity-Dependent Synaptic Plasticity
    relationship: RECAPITULATES
    fidelity: MODERATE
    model_scale: CELLULAR
    description: >-
      The heterozygous null reproduces the hippocampal long-term potentiation
      deficit expected from reduced GluN2B dosage, and the deficit is partially
      reversed by a receptor-potentiating agent.
    limitations: >-
      A constitutive whole-gene null models the deletion and truncating alleles
      but not the loss-of-function missense alleles, which may act through
      dominant-negative co-assembly rather than dosage alone. Mouse cognitive
      readouts are behavioral proxies for human intellectual disability, and the
      developmental timing of the GluN2B-to-GluN2A subunit switch differs between
      species.
    readouts:
    - name: Hippocampal long-term potentiation in slices
      target: Impaired Activity-Dependent Synaptic Plasticity
      direction: RESTORED
      interpretation: >-
        LTP was deficient in Grin2b+/- slices and partially restored by chronic
        spermidine, which is the rescue arm of the plasticity claim.
      evidence:
      - reference: PMID:40024627
        reference_title: "Spermidine Treatment Improves GRIN2B Loss-Of-Function, A Primary Disorder of Glutamatergic Neurotransmission."
        supports: SUPPORT
        evidence_source: MODEL_ORGANISM
        snippet: "Chronic spermidine administration in young adult Grin2b+/- mice partially rescued hippocampal long-term potentiation deficits in hippocampal slices of Grin2b+/- mice"
        explanation: >-
          Reports the LTP measurement and its partial restoration in the
          haploinsufficient mouse.
    evidence:
    - reference: PMID:40024627
      reference_title: "Spermidine Treatment Improves GRIN2B Loss-Of-Function, A Primary Disorder of Glutamatergic Neurotransmission."
      supports: SUPPORT
      evidence_source: MODEL_ORGANISM
      snippet: "a GRIN2B-LoF genetic murine model recapitulating GRD-like synaptic, motor, and cognitive alterations"
      explanation: >-
        Supports treating the heterozygous null as informative for the synaptic
        and cognitive nodes of this entry.
diagnosis:
- name: Molecular Genetic Testing
  description: >-
    Diagnosis rests on identifying a heterozygous pathogenic GRIN2B variant or an
    exon or whole-gene deletion, in practice through trio exome or genome
    sequencing or a neurodevelopmental gene panel. Chromosomal microarray remains
    necessary to detect the deletion class, which sequence analysis alone can
    miss. Establishing that the variant is de novo supports pathogenicity.
  diagnosis_term:
    preferred_term: genetic testing
    term:
      id: NCIT:C15709
      label: Genetic Testing
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "identification of either a heterozygous pathogenic variant or exon or whole-gene deletion of GRIN2B on molecular genetic testing."
    explanation: >-
      Defines the molecular diagnostic criteria, including the deletion class
      that requires copy-number-aware testing.
differential_diagnoses:
- name: GRIN2B-related developmental and epileptic encephalopathy (DEE27)
  disease_term:
    preferred_term: developmental and epileptic encephalopathy, 27
    term:
      id: MONDO:0014505
      label: developmental and epileptic encephalopathy, 27
  description: >-
    The allelic sibling entity at the same locus, and the single most important
    differential. Both are caused by heterozygous de novo GRIN2B variants and
    both feature developmental delay and intellectual disability, so the gene
    result does not discriminate them: only the clinical presentation and, where
    available, the functional class of the variant do. The two are poles of one
    allelic series rather than disjoint diseases, and intermediate presentations
    exist.
  distinguishing_features:
  - Defined by severe early-onset epileptic encephalopathy, in which frequent seizures and epileptiform activity themselves drive developmental impairment; MRD6 is named "with or without seizures" and lacks the encephalopathic course.
  - Enriched for gain-of-function variants, which are more likely to cause epilepsy and microcephaly, whereas MRD6 leans loss-of-function (deletions, truncating and hypomorphic missense alleles).
  - Gain-of-function variants cluster in the transmembrane domains, giving a structural correlate that partially predicts which arm a novel missense variant belongs to.
  - "Opposite mechanism-directed therapy: NMDA-receptor channel blockade (memantine, radiprodil) for the gain-of-function pole, receptor-potentiating strategies for the loss-of-function pole."
  evidence:
  - reference: PMID:41146259
    reference_title: "GRIN2B-related neurodevelopmental disorders: genotype-phenotype correlations and therapeutic implications."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "GOF variants were more likely to cause epilepsy and microcephaly than LOF variants."
    explanation: >-
      The variant-class comparison that separates the epileptic pole from the
      MRD6 pole.
  - reference: PMID:41146259
    reference_title: "GRIN2B-related neurodevelopmental disorders: genotype-phenotype correlations and therapeutic implications."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Variants located in the transmembrane domain predominantly resulted in a GOF effect."
    explanation: >-
      Supports the structural correlate in the third distinguishing feature:
      transmembrane-domain location predicts the gain-of-function pole.
  - reference: PMID:28533163
    reference_title: "GRIN2B gain of function mutations are sensitive to radiprodil, a negative allosteric modulator of GluN2B-containing NMDA receptors."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: "The potency of radiprodil to block glutamate-evoked currents was not affected in any of the variants, while the effects by non-selective NMDA inhibitors were greatly reduced in some of the variants."
    explanation: >-
      Supports the fourth distinguishing feature, that receptor blockade is the
      gain-of-function pole's mechanism-directed therapy: the GluN2B-selective
      blocker retains potency against gain-of-function variants where
      non-selective antagonists lose it.
- name: Other GRIN-related neurodevelopmental disorders (GRIN1, GRIN2A, GRIN2D)
  description: >-
    Disorders of the other NMDA-receptor subunit genes produce overlapping
    developmental delay, intellectual disability and epilepsy phenotypes and are
    typically on the same diagnostic gene panel. They are separated by the gene
    result rather than clinically, which is why panel or exome testing rather
    than single-gene testing is the appropriate diagnostic route.
  distinguishing_features:
  - Distinguished by the causal gene on sequencing, not by clinical features.
  - GRIN2A disease is more strongly associated with epilepsy-aphasia spectrum presentations.
  evidence:
  - reference: PMID:20890276
    reference_title: "Mutations in GRIN2A and GRIN2B encoding regulatory subunits of NMDA receptors cause variable neurodevelopmental phenotypes."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Either GRIN2B or GRIN2A, encoding the NMDA receptor subunits NR2B and NR2A, was found to be disrupted by chromosome translocation breakpoints in individuals with mental retardation and/or epilepsy."
    explanation: >-
      Both subunit genes produce overlapping intellectual-disability and epilepsy
      presentations, which is what makes them a differential for one another.
treatments:
- name: Developmental and Supportive Therapy
  description: >-
    Management is symptomatic and multidisciplinary: early intervention, physical
    and occupational therapy, speech and language therapy, feeding support where
    hypotonia causes difficulty, and behavioral intervention for the hyperactive,
    inattentive profile. No disease-modifying therapy is approved.
  therapeutic_modality: BEHAVIORAL
  treatment_term:
    preferred_term: supportive care
    term:
      id: NCIT:C15747
      label: Supportive Care
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "DD/ID, muscle tone abnormalities (spasticity, hypotonia, and feeding difficulties), epilepsy, ASD/behavioral issues, movement disorders, and/or cortical visual impairment are treated as per standard practice."
    explanation: >-
      Establishes symptomatic, standard-practice management as the basis of care.
- name: Spermidine Supplementation
  description: >-
    An investigational mechanism-directed therapy aimed specifically at the
    loss-of-function arm. Spermidine is the precursor of spermine, a natural
    polyamine that acts as a positive allosteric modulator of GluN2B-containing
    NMDA receptors, so the strategy is to potentiate hypofunctional receptors
    rather than block them. Preclinical support comes from the haploinsufficient
    mouse; human experience is limited to two pediatric patients with mild
    loss-of-function variants followed for 18 months, so this is an early signal
    and not established therapy.
  therapeutic_modality: SMALL_MOLECULE
  treatment_term:
    preferred_term: Pharmacotherapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
    therapeutic_agent:
    - preferred_term: spermidine
      term:
        id: CHEBI:16610
        label: spermidine
  target_mechanisms:
  - target: GluN2B-Containing NMDA Receptor Hypofunction
    treatment_effect: RESTORES
    description: >-
      Polyamine positive allosteric modulation raises the deficient
      NMDAR-mediated current of loss-of-function receptors.
  evidence:
  - reference: PMID:40024627
    reference_title: "Spermidine Treatment Improves GRIN2B Loss-Of-Function, A Primary Disorder of Glutamatergic Neurotransmission."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "18 months of spermidine treatment resulted in the amelioration of adaptive behavior (notably in the younger treated patient), with the absence of noticeable side effects."
    explanation: >-
      The human arm of the spermidine study, in two children with GRIN2B
      loss-of-function variants.
- name: L-Serine Supplementation
  description: >-
    The other receptor-potentiating strategy for the loss-of-function arm, and
    the one with the most human data. L-serine is the precursor of D-serine and
    glycine, the NMDA-receptor co-agonists, so supplying it aims to raise the
    occupancy of hypofunctional receptors. A phase 2A open-label trial in
    children with GRIN loss-of-function variants (NCT04646447) reported
    improvement across adaptive-behavior, motor and quality-of-life measures.
    The trial was single-arm and enrolled GRIN1 and GRIN2A alongside GRIN2B
    variants, so the GRIN2B-specific and placebo-controlled effect is not
    established.
  therapeutic_modality: SMALL_MOLECULE
  treatment_term:
    preferred_term: Pharmacotherapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
    therapeutic_agent:
    - preferred_term: L-serine
      term:
        id: CHEBI:17115
        label: L-serine
  target_mechanisms:
  - target: GluN2B-Containing NMDA Receptor Hypofunction
    treatment_effect: RESTORES
    description: >-
      Supplying the co-agonist precursor raises co-agonist site occupancy at
      hypofunctional NMDA receptors.
  evidence:
  - reference: PMID:38380699
    reference_title: "L-serine treatment in patients with GRIN-related encephalopathy: a phase 2A, non-randomized study."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "L-serine treatment was associated with significant improvement in the median Gross Motor Function-88 total score (P = 0.002) and the mean Pediatric Quality of Life total score (P = 0.00068), regardless of severity."
    explanation: >-
      The phase 2A trial's positive motor and quality-of-life outcomes in GRIN
      loss-of-function patients.
- name: Antiseizure Medication
  description: >-
    For the subset of individuals who develop seizures, standard antiseizure
    medication chosen by seizure type. This is symptomatic management rather
    than mechanism-directed therapy, and seizures are a variable rather than
    defining feature of MRD6.
  therapeutic_modality: SMALL_MOLECULE
  treatment_term:
    preferred_term: Pharmacotherapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
  target_mechanisms:
  - target: Seizures
    treatment_effect: INHIBITS
    description: >-
      Symptomatic suppression of seizures in the affected subset.
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "epilepsy, ASD/behavioral issues, movement disorders, and/or cortical visual impairment are treated as per standard practice."
    explanation: >-
      Epilepsy in the GRIN2B series is managed symptomatically per standard
      practice.
- name: Genetic Counseling
  description: >-
    Counseling covers the de novo origin of the variant, the consequently low but
    non-zero sib recurrence risk arising from possible parental germline
    mosaicism, and the reproductive options that follow from it.
  therapeutic_modality: OTHER
  treatment_term:
    preferred_term: Genetic Counseling
    term:
      id: NCIT:C15240
      label: Genetic Counseling
  evidence:
  - reference: PMID:29851452
    reference_title: "GRIN2B-Related Neurodevelopmental Disorder."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "All probands reported to date with a GRIN2B-related neurodevelopmental disorder whose parents have undergone molecular genetic testing have the disorder as a result of a de novo GRIN2B pathogenic variant or deletion."
    explanation: >-
      The de novo origin is the fact that determines the recurrence-risk
      counseling.
clinical_trials:
- name: NCT04646447
  phase: PHASE_II
  status: COMPLETED
  description: >-
    Phase 2A open-label, single-arm trial of L-serine in children aged 2-18 with
    GRIN loss-of-function pathogenic variants — the arm of the GRIN allelic
    series this entry describes. Enrolled GRIN2B, GRIN1 and GRIN2A variants
    together, so it is a GRIN loss-of-function trial rather than a
    GRIN2B-specific one.
  target_phenotypes:
  - preferred_term: Intellectual disability
    term:
      id: HP:0001249
      label: Intellectual disability
  - preferred_term: Hypotonia
    term:
      id: HP:0001252
      label: Hypotonia
  evidence:
  - reference: clinicaltrials:NCT04646447
    reference_title: "Tolerability and Efficacy of L-Serine in Patients With GRIN-related Encephalopathy"
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "The investigators will include about 20 spanish patients older than 2 years of age, harbouring GRIN variants functionally anotated as loss-of-function pathogenic variants."
    explanation: >-
      The registration record confirms the trial enrolls functionally annotated
      loss-of-function GRIN variants, which is the allelic class this entry
      curates.
discussions:
- discussion_id: grin2b_lof_gof_arm_separability
  kind: KNOWLEDGE_GAP
  status: OPEN
  prompt: >-
    Is the loss-of-function/gain-of-function axis a reliable partition of the
    GRIN2B allelic series into the MRD6 and DEE27 clinical entities, or is it a
    statistical enrichment across one continuum that does not support separate
    disease entries?
  attaches_to:
  - pathophysiology#GRIN2B Haploinsufficiency and Loss-of-Function Variation
  - pathophysiology#GluN2B-Containing NMDA Receptor Hypofunction
  - differential_diagnoses#GRIN2B-related developmental and epileptic encephalopathy (DEE27)
  rationale: >-
    This entry exists as a separate disease on the strength of a directional
    claim: that the loss-of-function allelic class predominates in the
    intellectual-disability presentation and the gain-of-function class in the
    epileptic-encephalopathy presentation. The supporting comparison is recent
    and self-described as the first of its kind, rests on 55 loss-of-function
    against 16 gain-of-function patients pooled largely from published case
    reports, and reports an enrichment rather than a partition — epilepsy occurs
    in the loss-of-function group too. Functional classification is itself
    unstable: whether a variant reads as gain- or loss-of-function depends on
    whether it is assayed in diheteromeric or triheteromeric receptors, so the
    same allele can change class with the assay. If the separability does not
    hold up in a larger prospectively phenotyped and uniformly assayed cohort,
    the correct outcome would be to merge this entry into a single
    GRIN2B-related neurodevelopmental disorder entry with the two presentations
    as subtypes.
  proposed_experiments:
  - experiment_id: exp_grin2b_uniform_assay_phenotype_partition
    name: Uniform triheteromeric-assay functional classification against prospective deep phenotyping
    description: >-
      Assay a large panel of patient GRIN2B variants under a single standardized
      protocol that includes triheteromeric GluN1/2A/2B receptors, rather than
      pooling diheteromeric results from heterogeneous sources, and test whether
      the resulting functional class predicts membership of the
      intellectual-disability versus epileptic-encephalopathy presentation in
      prospectively and uniformly phenotyped patients.
  evidence:
  - reference: PMID:35741674
    reference_title: "Synaptic Dysfunction by Mutations in GRIN2B: Influence of Triheteromeric NMDA Receptors on Gain-of-Function and Loss-of-Function Mutant Classification"
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: "thereby influencing the functional classification of NMDA receptor variants as GoF or LoF mutations"
    explanation: >-
      Shows the functional classification that this entry's separability argument
      depends on is itself assay-dependent, which is the core of the gap.
datasets: []
📚

References & Deep Research

References

1
GRIN2B-Related Neurodevelopmental Disorder.
No top-level findings curated for this source.

Deep Research

1

Deep research results are used as seeds for research; they do not undergo the same validation as the main records and may contain errors. How we use deep research.

Evaluations and curation notes (1)

Create: intellectual disability, autosomal dominant 6 · 2026-09-05T19:01:09Z · View source

De-novo curation of MRD6 (MONDO:0013509, GRIN2B hgnc:4586) as the non-encephalopathic arm of the GRIN2B allelic series, resolving claim issue 11066 and deleting the stub. Lump/split decision: curated as DISEASE, not SUBTYPE - distinct MONDO/OMIM identities (613970 vs 616139), separable ID-without-encephalopathy presentation, LOF-leaning mechanism (deletions/truncating/hypomorphic missense) vs the GOF-enriched DEE27 sibling, and opposite mechanism-directed therapy direction; the separability caveat is recorded as an open KNOWLEDGE_GAP discussion and in entry notes. Six-node pathophysiology chain with four nodes conforming (partially, per module notes) to nmda_receptor_hypofunction; the module BDNF arm is deliberately not reproduced for lack of GRIN2B-specific evidence. Deep research: Edison was requested but the provider slug is falcon in this checkout; falcon returned HTTP 402 (out of credits), so the run used the recorded --fallback mechanism and claude_code produced the report (research/Intellectual_Disability_Autosomal_Dominant_6-deep-research-claude_code.md, fell_back/requested_provider recorded in frontmatter). preflight-dr returned SKIP (MONDO records no causal gene for MONDO:0013509); manual check confirmed identity (OMIM 613970 in report, GRIN2B=41 mentions, no gene drift). The report's one unresolved reference (DOI:10.1016/j.ymgme.2023.107673) was not cited, and neither was its off-topic-flagged PMID:8789948 (Grin2b homozygous-null mouse; the heterozygous Grin2b+/- model from PMID:40024627 was used instead as the better match for a dominant haploinsufficiency disorder). Evidence: 40/40 snippets verified against references_cache (PMIDs 20890276, 23718928, 23918416, 27818011, 28377535 sibling-shared, 29851452 GeneReviews tagged, 29937144, 35741674, 36704660, 40024627, 41146259); mixed-source PMID:40024627 split into IN_VITRO/MODEL_ORGANISM/HUMAN_CLINICAL items per grading rules. Validation: just validate PASS, count-verified-snippets 40/40, validate-terms PASS, check-duplicate-keys/entity-refs/causal-targets/qualifier-terms/enum-values PASS, check-folded-hyphens/snippet-length/title-snippets/snippet-grading PASS (one short snippet fixed during the loop), validate-disorders run once at the end.

Claude Code ▸
1. Disease Information
claude-fable-5[1m], claude-haiku-4-5-20251001 26 citations 2026-09-04T20:45:12.348792

1. Disease Information

Overview. Intellectual Developmental Disorder, Autosomal Dominant 6, with or without seizures (MRD6) is a rare monogenic neurodevelopmental disorder caused by heterozygous, almost always de novo, pathogenic variants in GRIN2B, which encodes the GluN2B (NR2B/GluRε2) subunit of the N-methyl-D-aspartate (NMDA) glutamate receptor. It is the non-encephalopathic pole of the broader "GRIN2B-related neurodevelopmental disorder" spectrum: mild-to-profound developmental delay/intellectual disability in all affected individuals, with variable epilepsy, autism spectrum disorder/behavioral problems, muscle tone abnormalities, movement disorders, cortical visual impairment, and occasionally malformation of cortical development (GeneReviews NBK501979; PMID:28377535).

Key identifiers (verified):

Resource ID
OMIM (phenotype) #613970 — "Intellectual developmental disorder, autosomal dominant 6, with or without seizures; MRD6"
OMIM (gene) 138252 (GRIN2B)
MONDO MONDO:0013509 — intellectual disability, autosomal dominant 6
MedGen/UMLS C3151411
GARD 12851
Allelic OMIM phenotype #616139 — Developmental and epileptic encephalopathy 27 (DEE27), same gene
Orphanet No dedicated ORPHA code for MRD6; subsumed under autosomal dominant non-syndromic intellectual disability (ORPHA:178469 group); GRIN2B also listed as a gain-of-function gene for Infantile epileptic spasms syndrome (ORPHA:697160, per Orphadata gene table)
ICD-10 / ICD-11 No disease-specific code; coded as disorders of intellectual development (ICD-10 F70–F79; ICD-11 6A00) ± epilepsy codes

Synonyms: MRD6; GRIN2B-related neurodevelopmental disorder (GRIN2B-NDD, lumping term); GRIN2B encephalopathy (used when epilepsy/encephalopathy is prominent); mental retardation, autosomal dominant 6 (legacy); GRIN2B-related syndrome.

Data provenance. Knowledge is derived from aggregated case series and disease-level resources (OMIM, GeneReviews, ClinVar/ClinGen, the CFERV/GRIN variant registries), not population EHR data. The largest phenotype series remains Platzer et al. 2017 (n=86 pathogenic/likely pathogenic de novo variant carriers; PMID:28377535).

2. Etiology

Causal factor. Purely genetic: heterozygous pathogenic variants in GRIN2B (missense clustering in transmembrane and ligand-binding domains, truncating/frameshift, splice-site variants, and whole-gene or exonic deletions). Endele et al. first established causation by finding GRIN2B disrupted by translocation breakpoints and then four de novo mutations (a frameshift, a missense, two splice-site) on sequencing 468 individuals with intellectual disability: "Sequencing of GRIN2B in 468 individuals with mental retardation revealed four de novo mutations: a frameshift, a missense and two splice-site mutations." (PMID:20890276, Nat Genet 2010).

Genetic risk factors. The only established risk factor is the de novo variant itself; there are no known susceptibility loci or modifier genes for MRD6. Advanced paternal age raises de novo SNV rates generically (inference from de novo mutation biology, not demonstrated for GRIN2B specifically). ClinGen has curated GRIN2B dosage sensitivity with a haploinsufficiency score of 3 (sufficient evidence) for intellectual disability, autosomal dominant 6 (ClinGen gene-dosage HGNC:4586).

Environmental risk/protective factors. None known; no gene–environment interactions are documented (CTD lists no curated GRIN2B chemical–disease interactions specific to MRD6). Environmental modulation of outcome is limited to non-specific factors (access to early intervention, seizure control).

Protective genetic factors. None described.

3. Phenotypes

Frequencies below are from the GeneReviews GRIN2B-NDD chapter (NBK501979, Platzer & Lemke) drawing on the 86-patient Platzer 2017 cohort (PMID:28377535).

Phenotype Frequency Onset Severity/course Suggested HP term
Developmental delay / intellectual disability 100% (mild ~15%, severe–profound ~61%) infancy stable, non-degenerative; regression rare (~7%) HP:0001263 Global developmental delay; HP:0001249 Intellectual disability (suggest)
Muscular hypotonia ~56% (15% of these tube-fed) neonatal/infantile often persistent HP:0001252 Hypotonia (suggest)
Epilepsy (various types incl. infantile spasms, focal, generalized) ~51% birth–9 y ~half drug-resistant HP:0001250 Seizure; HP:0012469 Infantile spasms (suggest)
Autism spectrum disorder / behavioral abnormalities ~26% early childhood chronic HP:0000717 Autism; HP:0000708 Abnormal behavior (suggest)
Spasticity ~23% (only in severe ID) childhood chronic HP:0001257 Spasticity (suggest)
Microcephaly ~18% (severe ID only) congenital/postnatal stable HP:0000252 Microcephaly (suggest)
Malformation of cortical development (polymicrogyria-like, intermediate with tubulinopathy pattern) ~13% (6/48 in Platzer series) congenital structural HP:0002126 Polymicrogyria (suggest)
Movement disorder (dystonic, dyskinetic, choreiform) ~10% infancy/childhood chronic HP:0001332 Dystonia; HP:0002072 Chorea (suggest)
Cortical visual impairment ~8% infancy chronic HP:0100704 Cerebral visual impairment (suggest)
Feeding difficulties subset of hypotonic patients neonatal may need gastrostomy HP:0011968 Feeding difficulties (suggest)
Macrocephaly (12p13 deletion cases) occasional infancy — HP:0000256 Macrocephaly (suggest); PMID:27656287

Platzer abstract (verbatim, quotable): "Patients presented with neurodevelopmental disorders and a spectrum of hypotonia, movement disorder, cortical visual impairment, cerebral volume loss and epilepsy." (PMID:28377535).

Quality of life impact. Dominated by ID severity, drug-resistant epilepsy, non-verbal status (many severe cases have absent speech — HP:0001344, suggest), feeding dependence, and caregiver burden; no disease-specific EQ-5D/PROMIS studies exist (gap).

4. Genetic/Molecular Information

  • Causal gene: GRIN2B (hgnc:4586; OMIM 138252), chromosome 12p13.1, encoding GluN2B, one of the glutamate-binding NR2 subunits of the heterotetrameric NMDA receptor (2×GluN1 + 2×GluN2) (PMID:20890276).
  • Variant spectrum: ~95% detectable by sequence analysis (missense, nonsense, frameshift, splice); ~5% exon/whole-gene deletions detectable by del/dup analysis or CMA (GeneReviews NBK501979). Missense variants cluster in transmembrane segments and ligand-binding (agonist-binding) domains (PMID:28377535). 12p13 deletions encompassing GRIN2B cause DD with macrocephaly (PMID:27656287).
  • Origin: de novo germline in essentially all molecularly confirmed probands; somatic variants are not a recognized mechanism.
  • Functional consequence classes: both loss-of-function (reduced surface expression, reduced agonist potency, reduced open probability, haploinsufficiency from truncation/deletion) and gain-of-function (increased glutamate/glycine potency, reduced voltage-dependent Mg²⁺ block, prolonged deactivation): "Functional consequences of variants were diverse, revealing various potential gain-of-function and loss-of-function mechanisms and a retained sensitivity to the use-dependent blocker memantine." (PMID:28377535). CFERV (Emory) maintains functional annotations per variant (PMID:27818011).
  • Population frequency: pathogenic variants are absent from population databases; GRIN2B is among the most missense- and LoF-constrained genes in gnomAD (pLI ≈ 1) — consistent with dominant de novo disease (constraint claim: standard gnomAD observation; verify current v4 values before curation).
  • Modifier genes / epigenetics: none established. No disease-defining methylation episignature reported.
  • Chromosomal abnormalities: translocations disrupting GRIN2B were the original discovery route (PMID:20890276); 12p13.1 microdeletions are a recurrent mechanism (DECIPHER; PMID:27656287).

5. Environmental Information

Not applicable as etiology: no toxins, lifestyle factors, or infectious agents cause or trigger MRD6. Fever/illness may transiently worsen seizures as in other developmental epilepsies (generic inference, not GRIN2B-specific evidence).

6. Mechanism / Pathophysiology

Causal chain (numbered; branch points marked):

  1. A de novo heterozygous GRIN2B variant (missense in TMD/ligand-binding domain, truncating/splice variant, or gene deletion) leads to an altered or absent GluN2B protein (PMID:20890276; PMID:28377535).
  2. Altered GluN2B results in abnormal GluN2B-containing NMDA receptor function — branch A (loss of function): reduced receptor surface expression, agonist potency, or channel open probability, or pure haploinsufficiency; branch B (gain of function): increased agonist potency, reduced Mg²⁺ block, and/or prolonged channel activation (PMID:28377535; PMID:27818011).
  3. Because GluN2B is the predominant NR2 subunit of prenatal and early postnatal forebrain (before the developmental GluN2B→GluN2A switch), either branch disrupts NMDAR-mediated Ca²⁺ influx and downstream signaling at developing glutamatergic synapses (PMID:20890276 — "disturbances in the neuronal electrophysiological balance during development result in variable neurological phenotypes"; review DOI:10.3389/fnsyn.2022.1090865).
  4. Dysregulated NMDAR signaling impairs neuronal differentiation, dendrite morphogenesis, synaptogenesis, and synaptic plasticity (LTP/LTD): "disease-associated GluN2B variants interfere with neuronal differentiation, dendrite morphogenesis, synaptogenesis, and synaptic plasticity" (Sabo et al., Front Synaptic Neurosci 2023, DOI:10.3389/fnsyn.2022.1090865; largely in vitro/model-organism evidence — an inferred step in humans).
  5. In a subset, disturbed NMDAR-dependent neuronal migration during corticogenesis produces malformation of cortical development (polymicrogyria-like MCD intermediate with tubulinopathies) (PMID:28377535; mechanism inferred).
  6. Synaptic/network dysfunction manifests as excitatory–inhibitory imbalance leading to the clinical phenotypes — DD/ID universally; epilepsy (enriched in gain-of-function; Orphadata annotates the IESS association specifically as gain-of-function, ORPHA:697160 gene table); ASD/behavioral phenotypes; hypotonia/movement disorder; cortical visual impairment.

Ontology anchors (suggest, verify before binding): GO:0004972 NMDA glutamate receptor activity; GO:0035235 ionotropic glutamate receptor signaling pathway; GO:0007268 chemical synaptic transmission; GO:0060291 long-term synaptic potentiation; GO:0060292 long-term synaptic depression; GO:0048813 dendrite morphogenesis; GO:0007416 synapse assembly; GO:0070588 calcium ion transmembrane transport; GO:0014069 postsynaptic density; GO:0017146 NMDA selective glutamate receptor complex; GO:0098978 glutamatergic synapse. Cell types: CL:0000679 glutamatergic neuron; CL:0000598 pyramidal neuron; CL:0000617 GABAergic neuron (interneuron migration/maturation involvement is hypothesized).

Molecular profiling. No human patient transcriptomic/proteomic/metabolomic signature is established (gap). Model-system profiling exists in mouse/rat haploinsufficiency models (e.g., absence seizures and sleep abnormalities in a Grin2b⁺/⁻ rat, bioRxiv 2024 preprint DOI:10.1101/2024.02.27.582289 — preprint, weight accordingly).

7. Anatomical Structures Affected

  • Primary organ: brain (UBERON:0000955, suggest), especially cerebral cortex (UBERON:0000956) and hippocampal formation (UBERON:0002421); cerebral volume loss and MCD on MRI (PMID:28377535).
  • Systems: nervous system primarily; secondary musculoskeletal (tone, spasticity-related contractures), visual (cortical visual impairment — the lesion is cortical, eyes structurally normal), gastrointestinal/feeding (hypotonia-related).
  • Tissue/cell level: glutamatergic synapses of cortical and hippocampal excitatory neurons; developing neurons broadly (GluN2B expression is pan-forebrain prenatally).
  • Subcellular: postsynaptic membrane/postsynaptic density of dendritic spines (GO:0014069, suggest); receptor also signals extrasynaptically.
  • Lateralization: bilateral; MCD when present is typically bilateral (PMID:28377535).

8. Temporal Development

  • Onset: congenital/infantile. Developmental delay evident in the first year; hypotonia often neonatal; epilepsy onset birth–9 years (GeneReviews NBK501979).
  • Course: chronic, lifelong, generally non-progressive with respect to cognition (static encephalopathy); developmental regression uncommon (~7%). Epilepsy course variable; roughly half of epileptic patients are drug-resistant.
  • Critical periods: the disorder acts during the prenatal/early-postnatal window when GluN2B-containing receptors dominate; this window is also the hypothesized therapeutic-opportunity period for mechanism-based intervention (inference; DOI:10.3389/fnsyn.2022.1090865).
  • Remission: not applicable for core ID; some epilepsies respond to ASMs.

9. Inheritance and Population

  • Inheritance: autosomal dominant; all reported molecularly confirmed probands with tested parents carry de novo variants (GeneReviews NBK501979). Penetrance estimated 100%. Expressivity is highly variable (mild ID without seizures → severe DEE).
  • Recurrence risk: ~1% for sibs, reflecting possible parental germline mosaicism; parental somatic+inferred germline mosaicism was ~10% in a general DEE cohort study cited by GeneReviews (NBK501979).
  • No anticipation, no founder effects, no consanguinity effect (dominant de novo mechanism); carrier frequency not applicable.
  • Epidemiology: point prevalence unknown; fewer than ~100 fully phenotyped individuals published as of the GeneReviews update, though diagnostic-lab counts are higher. GRIN2B variants account for ~0.2% of NDD/childhood-epilepsy cohorts (NBK501979). Model-based birth incidence estimate: ~5.91 per 100,000 live births for GRIN2B de novo disorder (López-Rivera et al., Brain 2020, 143:1099–1105 — one of the most common single-gene NDD estimates in that catalogue).
  • Demographics: no ethnic or geographic clustering; sexes affected roughly equally (case-series data; no formal sex-ratio study).

10. Diagnostics

  • Genetic testing (diagnostic gold standard): trio exome/genome sequencing or an ID/epilepsy multigene panel containing GRIN2B is first-line; single-gene testing is not recommended. Sequence analysis detects ~95% of pathogenic variants; CMA/targeted del-dup detects the ~5% that are deletions (GeneReviews NBK501979; GTR condition C3151411). Establishing de novo status supports pathogenicity (ACMG PS2).
  • Variant interpretation: ClinVar holds many classified variants (e.g., RCV000022580 c.411+1G>A; RCV000625193 p.Ile751Thr); functional stratification (GoF vs LoF) via CFERV electrophysiology increasingly informs both interpretation and therapy selection (PMID:27818011; PMID:28377535).
  • Neuroimaging: brain MRI may show cerebral volume loss, thin corpus callosum, or the characteristic MCD "intermediate between tubulinopathies and polymicrogyria" (PMID:28377535).
  • EEG: indicated when seizures suspected; hypsarrhythmia in infantile-spasm presentations.
  • Laboratory biomarkers: none; routine metabolic work-up is normal (distinguishes from metabolic ID).
  • Differential diagnosis: other GRIN disorders (GRIN1, GRIN2A, GRIN2D), DEE27 (allelic; distinguished by epileptic-encephalopathy severity rather than gene), other monogenic NDDs (SCN2A, STXBP1, SYNGAP1, tubulinopathies when MCD present), Angelman/Rett-like presentations.
  • Screening: not in newborn screening; carrier screening not applicable (de novo). Cascade testing limited to parental testing for mosaicism/recurrence counseling.

11. Outcome/Prognosis

  • Survival: no systematic mortality data; lifespan appears near-normal in most, but severe DEE presentations carry generic risks (SUDEP, aspiration) — stated as inference, not measured.
  • Morbidity: driven by ID severity (61% severe–profound), drug-resistant epilepsy (~half of the epileptic subgroup), non-ambulation and absent speech in severe cases, feeding dependence.
  • Prognostic factors: variant class and location are the main predictors — functional GoF associates with earlier, more severe epilepsy; truncating/deletion (haploinsufficiency) more often with ID/ASD without severe epilepsy; MCD predicts severe outcome (PMID:28377535; genotype–phenotype review DOI:10.1186/s13023-025-04055-x, Orphanet J Rare Dis 2025).
  • Recovery potential: core ID is static; developmental gains occur with therapy but full recovery is not observed.

12. Treatment

No disease-modifying therapy is approved; management is symptomatic (GeneReviews NBK501979). Suggested NCIT bindings marked (suggest).

  • Anti-seizure pharmacotherapy — standard ASMs chosen by seizure type; ~50% of the epilepsy is drug-resistant. (NCIT:C15986 Pharmacotherapy, suggest.)
  • Memantine (repurposed NMDAR channel blocker) — rationale: variants retain "sensitivity to the use-dependent blocker memantine", but "an objectifiable beneficial treatment response in the respective patients still remains to be demonstrated" (PMID:28377535, verbatim). Anecdotal use in GoF variants. (CHEBI:64312 memantine, suggest.)
  • L-serine dietary supplementation (LoF variants) — in a patient with GluN2B(P553T), D-serine restored receptor function in vitro and 11–17 months of L-serine supplementation was "associated with clinical improvement" in motor/cognitive performance and communication (Soto et al., Sci Signal 2019, DOI:10.1126/scisignal.aaw0936; n = 1). Phase 2A trial NCT04646447 (L-serine in GRIN-related encephalopathy) and n-of-1 crossover protocols (PMC10746402) followed; a 2023 Mol Genet Metab study reports further supportive evidence (DOI:10.1016/j.ymgme.2023.107673 — verify exact DOI from the ScienceDirect record S1096719223001531 before citing in KB). (CHEBI:17115 L-serine, suggest; NCIT:C15447 Dietary Intervention, suggest.)
  • Radiprodil (GluN2B-selective negative allosteric modulator; GoF variants) — in vitro, GRIN2B gain-of-function mutations are sensitive to radiprodil (PMID:28533163). Phase 1b Honeycomb trial (NCT05818943, ages 6 mo–12 y, GoF GRIN variants) reported ~86% median reduction in countable motor seizures; FDA Breakthrough Therapy designation granted; global Phase 3 BeeLine trial dosing began late 2025/2026 (industry-reported NCT07224581 — verify registry ID before KB use).
  • Developmental/supportive care — early-intervention programs, physical therapy (NCIT:C15302), occupational therapy (NCIT:C121351), speech/feeding therapy (NCIT:C159273), ABA-based behavioral intervention for ASD, gastrostomy feeding when required, standard spasticity and movement-disorder management. (All suggest.)
  • Pharmacogenomics: the genotype itself (GoF vs LoF) is the stratifier for mechanism-based therapy — the clearest precision-medicine axis in this disease (PMID:28377535; DOI:10.1186/s13023-025-04055-x).

13. Prevention

  • Primary prevention: none possible (sporadic de novo).
  • Genetic counseling: essential; recurrence risk ~1% (germline mosaicism); prenatal and preimplantation genetic testing may be offered for that residual risk (GeneReviews NBK501979; NCIT:C15240 Genetic Counseling, suggest).
  • Secondary/tertiary prevention: early molecular diagnosis enables early intervention, seizure surveillance, vision assessment, and avoidance of diagnostic odyssey; aggressive seizure control to limit encephalopathic contribution (standard-of-care inference).
  • Population screening, immunization, and environmental interventions: not applicable.

14. Other Species / Natural Disease

  • No naturally occurring GRIN2B disease is documented in companion animals or livestock (no OMIA phene identified for GRIN2B) — engineered models only.
  • Orthologs (Alliance of Genome Resources): mouse Grin2b (MGI:95821, suggest-verify), rat Grin2b, zebrafish grin2bb/grin2ba, Drosophila Nmdar2, C. elegans nmr-2. GluN2B function in synaptic development is deeply conserved; the developmental GluN2B→GluN2A subunit switch is conserved across mammals (review DOI:10.3389/fnsyn.2022.1090865).
  • Zoonotic/transmission sections: not applicable.

15. Model Organisms

  • Mouse, Grin2b null (ε2⁻/⁻): the foundational model — homozygous knockouts have no suckling response and die perinatally (rescuable briefly by hand-feeding), with impaired trigeminal barrelette formation and loss of hippocampal LTD (Kutsuwada et al., Neuron 1996;16(2):333–344, PMID:8789948). Demonstrates GluN2B's essential developmental role; homozygous lethality is why human disease is heterozygous. Limitation: the null homozygote does not model the human heterozygous state; fidelity for MRD6 is indirect.
  • Mouse, Grin2b heterozygous and point-mutant knock-ins (e.g., patient-derived C456Y LoF knock-in with NMDAR hypofunction and anxiety-like/behavioral phenotypes — see Sabo 2023 review for the model survey, DOI:10.3389/fnsyn.2022.1090865): recapitulate synaptic plasticity deficits and behavioral abnormalities; partial phenotype recapitulation (no robust seizures in most LoF models).
  • Rat, Grin2b haploinsufficient: reported absence-like seizures and sleep abnormalities (bioRxiv 2024, DOI:10.1101/2024.02.27.582289 — preprint).
  • In vitro / cellular: heterologous electrophysiology (Xenopus oocytes/HEK) is the workhorse for GoF/LoF classification (PMID:28377535; PMID:27818011); patient-variant-expressing primary hippocampal neurons show reduced spine density and impaired NMDAR-dependent AMPA-receptor insertion for GluN2B(P553T) (DOI:10.1126/scisignal.aaw0936); patient iPSC-derived neuron models are emerging.
  • Applications: variant functional triage (drives therapy stratification), preclinical testing of memantine/radiprodil/serine, developmental-mechanism studies. Resources: MGI, IMPC (Grin2b het viability data), CFERV variant database, GRIN2B Foundation & CureGRIN registries.

Key primary citations (verified this session)

  • PMID:20890276 — Endele S, et al. Mutations in GRIN2A and GRIN2B encoding regulatory subunits of NMDA receptors cause variable neurodevelopmental phenotypes. Nat Genet 2010;42(11):1021–6. doi:10.1038/ng.677. (Gene discovery; abstract cached locally.)
  • PMID:28377535 — Platzer K, et al. GRIN2B encephalopathy: novel findings on phenotype, variant clustering, functional consequences and treatment aspects. J Med Genet 2017;54(7):460–470. doi:10.1136/jmedgenet-2016-104509. (Largest cohort; abstract cached locally.)
  • PMID:8789948 — Kutsuwada T, et al. Impairment of suckling response, trigeminal neuronal pattern formation, and hippocampal LTD in NMDA receptor ε2 subunit mutant mice. Neuron 1996;16(2):333–44.
  • PMID:27818011 — Hu C, Chen W, Myers SJ, Yuan H, Traynelis SF. Human GRIN2B variants in neurodevelopmental disorders. J Pharmacol Sci 2016;132(2):115–121.
  • PMID:28533163 — GRIN2B gain of function mutations are sensitive to radiprodil, a negative allosteric modulator of GluN2B-containing NMDA receptors.
  • PMID:27656287 — A 12p13 GRIN2B deletion is associated with developmental delay and macrocephaly.
  • Soto D, et al. Sci Signal 2019;12(586):eaaw0936. doi:10.1126/scisignal.aaw0936 (L-serine, LoF).
  • Sabo SL, Lahr JM, Sceniak MP. Front Synaptic Neurosci 2023;14:1090865. doi:10.3389/fnsyn.2022.1090865 (mechanism review; PMC9873235).
  • GeneReviews: GRIN2B-Related Neurodevelopmental Disorder (NBK501979).
  • López-Rivera JA, et al. Brain 2020;143:1099–1105 (incidence catalogue: 5.91/100,000).
  • Orphanet J Rare Dis 2025, doi:10.1186/s13023-025-04055-x (genotype–phenotype/therapeutic review).
  • Trials: NCT04646447 (L-serine, Phase 2A), NCT05818943 (radiprodil Honeycomb Phase 1b).

Sources: - OMIM Entry #613970 — MRD6 - ClinGen condition MONDO:0013509 - ClinGen GRIN2B dosage sensitivity (HGNC:4586) - GeneReviews: GRIN2B-Related Neurodevelopmental Disorder (NBK501979) - GARD 12851 — Intellectual disability, autosomal dominant 6 - MedGen C3151411 - Platzer 2017, PMID 28377535 - Endele 2010, Nat Genet - Kutsuwada 1996, PMID 8789948 - Hu 2016, PMID 27818011 - Radiprodil in vitro, PMID 28533163 - 12p13 GRIN2B deletion, PMID 27656287 - Soto 2019, Science Signaling - Sabo 2023 mechanism review, Front Synaptic Neurosci - López-Rivera 2020 incidence catalogue, Brain - OJRD 2025 genotype–phenotype review - L-serine trial NCT04646447 - Radiprodil Breakthrough Therapy designation - Phase 3 BeeLine trial announcement - Grin2b rat model preprint, bioRxiv 2024 - ClinVar RCV000022580 · RCV000625193 - GTR condition C3151411 - MRD6 case report, Cureus 2023 (PMC10623208) - L-serine n-of-1 protocol (PMC10746402) - MedlinePlus GRIN2B gene

Reference Validation

Checked with linkml-reference-validator 0.2.1.

Outcome Count
References checked 16
Resolved 15
Unresolved (possible confabulation) 1
Unverifiable 0
Quoted claims checked 1
Quoted claims found in source 1
Quoted claims not found in source 0
References weighed for topical relevance 15
On topic 11
Off topic 1

Unresolved references

These identifiers did not resolve to a record and may be fabricated. A lookup that failed for transport reasons is indistinguishable from one that failed because the record does not exist, so spot-check before acting on them:

  • DOI:10.1016/j.ymgme.2023.107673 (1 mention) - Identifier did not resolve to a record

References that may not be about this subject

These identifiers resolve, so they are not fabrications, but the records they resolve to share almost none of this report's vocabulary. That is a clue and not a verdict - a paper can be relevant in ways its title and abstract do not spell out - so read them before deciding:

  • PMID:8789948 (5 mentions) - Impairment of suckling response, trigeminal neuronal pattern formation, and hippocampal LTD in NMDA receptor epsilon 2 subunit mutant mice.
  • shared terms: receptor

Weighed against this report's own most characteristic terms: grin2b, variant, developmental, seizure, nbk501979, disorder, novo, gene, epilepsy, glun2b, receptor, dominant, mrd6, deletion, phenotype, intellectual, autosomal, disability, disease, therapy.

Term Validation

Checked with linkml-term-validator 0.4.5, through the ols: adapter.

Outcome Count
Terms checked 46
Resolved 42
Unresolved (possible confabulation) 0
Obsolete 0
Unverifiable 4
Terms whose name was checked 1
Terms named correctly 0
Terms named as a different term 1

Terms the report names something else

These identifiers resolve, so nothing about them looks wrong, and the ontology calls them something unrelated to what the report calls them. That usually means the identifier is not the one the sentence needs:

  • NCIT:C15302 (1 mention) - the report calls it "Developmental/supportive care — early-intervention programs, physical therapy"; NCIT calls it Physical Therapy**

Prefixes with no resolver

Terms carrying these prefixes were not checked either way, because no configured ontology covers them. An unrecognised prefix may name an ontology this run could not reach as easily as one that does not exist, so nothing here is evidence of fabrication: ORPHA, MGI.