MASP-2 deficiency is an inherited defect of the lectin pathway of complement caused, in Europeans, by homozygosity for the MASP2 missense variant c.359A>G (p.D120G, rs72550870). MASP-2 is the protease that cleaves C4 after a lectin-pathway recognition molecule - mannose-binding lectin, a ficolin or a collectin - has bound its ligand, so it is the one component of the arm that none of the others can substitute for. The D120G substitution abolishes the interaction with mannose-binding lectin, so no C4 is cleaved and lectin pathway activity is lost completely rather than partially. Whether that loss is a disease is genuinely unsettled, and this entry curates the dispute rather than resolving it. The deficiency was reported in 2003 in an adult with autoimmune and inflammatory disease and recurrent pneumococcal infection, and has been listed since 2004 among the primary immunodeficiencies as a complement defect predisposing to pyogenic infection, inflammatory lung disease and autoimmunity. Against that, the largest targeted study found no homozygote among 1495 adults hospitalised with community-acquired pneumonia, 103 children with invasive pneumococcal disease or 186 patients with systemic lupus erythematosus, while finding homozygotes among its healthy controls; its review of the literature counted eleven affected individuals with no shared phenotype against nine healthy homozygotes, nearly all of both groups found by chance in association studies. Its authors conclude that MASP-2 is largely redundant in human defence. Supporting negative results come from a neonatal cohort, a cystic fibrosis cohort and a MASP-2-deficient mouse line. The positive signals that survive are narrow: an excess of febrile neutropenia in children receiving chemotherapy, and two adults with herpes simplex encephalitis carrying rare MASP2 variants other than D120G. So the honest reading is of a complete, well-characterised molecular lesion with no established clinical penetrance. The entry records both readings, with the contradicting evidence curated as REFUTE items rather than omitted.
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name: Immunodeficiency Due To MASP-2 Deficiency
creation_date: "2026-10-15T02:18:25Z"
category: Mendelian
description: >-
MASP-2 deficiency is an inherited defect of the lectin pathway of complement
caused, in Europeans, by homozygosity for the MASP2 missense variant
c.359A>G (p.D120G, rs72550870). MASP-2 is the protease that cleaves C4 after
a lectin-pathway recognition molecule - mannose-binding lectin, a ficolin or
a collectin - has bound its ligand, so it is the one component of the arm
that none of the others can substitute for. The D120G substitution abolishes
the interaction with mannose-binding lectin, so no C4 is cleaved and lectin
pathway activity is lost completely rather than partially.
Whether that loss is a disease is genuinely unsettled, and this entry curates
the dispute rather than resolving it. The deficiency was reported in 2003 in
an adult with autoimmune and inflammatory disease and recurrent pneumococcal
infection, and has been listed since 2004 among the primary immunodeficiencies
as a complement defect predisposing to pyogenic infection, inflammatory lung
disease and autoimmunity. Against that, the largest targeted study found no
homozygote among 1495 adults hospitalised with community-acquired pneumonia,
103 children with invasive pneumococcal disease or 186 patients with systemic
lupus erythematosus, while finding homozygotes among its healthy controls;
its review of the literature counted eleven affected individuals with no
shared phenotype against nine healthy homozygotes, nearly all of both groups
found by chance in association studies. Its authors conclude that MASP-2 is
largely redundant in human defence. Supporting negative results come from a
neonatal cohort, a cystic fibrosis cohort and a MASP-2-deficient mouse line.
The positive signals that survive are narrow: an excess of febrile
neutropenia in children receiving chemotherapy, and two adults with herpes
simplex encephalitis carrying rare MASP2 variants other than D120G.
So the honest reading is of a complete, well-characterised molecular lesion
with no established clinical penetrance. The entry records both readings, with
the contradicting evidence curated as REFUTE items rather than omitted.
disease_term:
preferred_term: immunodeficiency due to MASP-2 deficiency
term:
id: MONDO:0013423
label: immunodeficiency due to MASP-2 deficiency
synonyms:
- MASP-2 deficiency
- MASP2 deficiency
- mannan-binding lectin-associated serine protease 2 deficiency
- mannose-binding lectin-associated serine protease-2 deficiency
parents:
- Complement Disorder
classifications:
harrisons_chapter:
- classification_value: IMMUNE_RHEUMATOLOGIC
notes: >-
A primary complement deficiency listed among the inborn errors of immunity
and discussed in terms of pyogenic infection and autoimmunity, placing it
in Harrison's immune/rheumatologic Part beside the sibling
Ficolin_3_Deficiency and Complement_Component_2_Deficiency entries.
iuis_category:
classification_value: complement deficiency
notes: >-
IUIS Table 8 carries a MASP2 deficiency row. This is the lectin-pathway
enzyme row, as distinct from the lectin-pathway recognition-molecule row
that Ficolin_3_Deficiency carries.
inheritance:
- name: Autosomal Recessive
description: >-
The deficiency state requires homozygosity for MASP2 p.D120G. Heterozygotes
have reduced serum MASP-2 but retain lectin-pathway function and are not
described as a disease state.
inheritance_term:
preferred_term: Autosomal recessive inheritance
term:
id: HP:0000007
label: Autosomal recessive inheritance
evidence:
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "In Europeans, MASP-2 deficiency, due to homozygosity for c.359A > G"
explanation: >-
States that the deficiency state is the homozygous genotype, which is what
the recessive mode of inheritance rests on.
- reference: PMID:19307021
reference_title: "Mannan-binding lectin-associated serine protease-2 (MASP-2) in a large cohort of neonates and its clinical associations."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Heterozygosity for this allele significantly influenced the protein concentration, but not the lectin pathway of complement activity"
explanation: >-
Separates the heterozygous carrier state, which lowers protein level
without abolishing function, from the homozygous deficiency.
pathophysiology:
- name: MASP2 p.D120G Loss of Binding to Lectin Pathway Recognition Molecules
biological_scale: MOLECULAR
description: >-
MASP-2 circulates in complexes with the recognition molecules of the lectin
pathway and is activated when one of them binds a microbial or altered-self
surface. The p.D120G substitution falls in the region that mediates that
association: recombinant D120G MASP-2 does not bind mannose-binding lectin,
so the enzyme is never recruited to a recognised surface. The variant is
found in Europeans and in Inuit from West Greenland and not in the other
populations surveyed.
genetic_context:
gene:
preferred_term: MASP2
term:
id: hgnc:6902
label: MASP2
functional_impact_category: LOSS_OF_FUNCTION
molecular_functions:
- preferred_term: MASP-2 serine protease activity on recognised surfaces
term:
id: GO:0004252
label: serine-type endopeptidase activity
modifier: DECREASED
evidence:
- reference: PMID:19234189
reference_title: "Polymorphisms in mannan-binding lectin (MBL)-associated serine protease 2 affect stability, binding to MBL, and enzymatic activity."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "We found that D120G and CHNHdup could not associate with MBL, whereas R99Q, P126L, H155R, V377A, R439H, and wild-type MASP-2 bound equally well to MBL."
explanation: >-
The direct demonstration, in recombinant protein, that D120G abolishes the
interaction with the recognition molecule. This is what LOSS_OF_FUNCTION
rests on, and it distinguishes D120G from the several MASP2 polymorphisms
that bind normally.
- reference: PMID:17252003
reference_title: "Deficiency of mannan-binding lectin associated serine protease-2 due to missense polymorphisms."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "p.D120G was found only in Caucasians and Inuits from West-Greenland."
explanation: >-
Establishes the population distribution of the causal allele, which is why
the prevalence record below is restricted to Europeans.
downstream:
- target: Failure of Lectin Pathway C4 Cleavage
causal_link_type: DIRECT
description: >-
An enzyme that cannot be recruited to a recognised surface cannot cleave
the substrate waiting there, so the binding defect is the whole of the
functional defect.
evidence:
- reference: PMID:19234189
reference_title: "Polymorphisms in mannan-binding lectin (MBL)-associated serine protease 2 affect stability, binding to MBL, and enzymatic activity."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "when D120G and CHNHdup were mixed with MBL, no activation of complement factor C4 was observed"
explanation: >-
Tests the two steps in the same experiment: the variants that fail to
associate with MBL are the variants that produce no C4 activation.
- name: Failure of Lectin Pathway C4 Cleavage
biological_scale: MOLECULAR
description: >-
C4 is cleaved by MASP-2 alone among the MASPs, so loss of MASP-2 function
removes the lectin pathway's route to the C3 convertase C4b2a and abolishes
lectin-pathway activity outright. This is a stronger molecular lesion than a
recognition-molecule deficiency such as ficolin-3 deficiency, where the
remaining recognition molecules still reach the same enzyme. The classical
and alternative pathways are unaffected.
biological_processes:
- preferred_term: complement activation, lectin pathway
term:
id: GO:0001867
label: complement activation, lectin pathway
modifier: DECREASED
evidence:
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
quote_role: BACKGROUND
snippet: "is an indispensable enzyme for the activation of the lectin pathway of complement"
explanation: >-
States that the enzyme is non-redundant within the pathway, which is why
the block is complete. The sentence is the paper's framing of MASP-2
biology rather than its own measurement.
- reference: PMID:15654829
reference_title: "Deficiency of the mannan-binding lectin pathway of complement and poor outcome in cystic fibrosis: bacterial colonization may be decisive for a relationship."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "As expected, MBL pathway function in serum was reduced both in MBL-deficient patients and in patients carrying a mutant MASP-2 allele."
explanation: >-
Confirms in patient serum, rather than in recombinant protein, that
carrying a mutant MASP2 allele reduces measured lectin-pathway function.
downstream:
- target: Reduced Lectin Pathway Opsonization of Microbial Surfaces
causal_link_type: DIRECT
description: >-
C4b and the C3 convertase it forms are what deposit opsonins on a
recognised surface, so a pathway that cannot cleave C4 deposits none by
this route.
- target: Impaired Lectin Pathway Antiviral Activity
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: >-
Proposed rather than established. The herpes simplex encephalitis report
that motivates this node measured reduced antiviral activity for a rare
MASP2 variant, not for D120G, so the edge is drawn from a different
genetic lesion in the same gene, and how lectin-pathway activity restrains
the virus is not established.
- name: Reduced Lectin Pathway Opsonization of Microbial Surfaces
biological_scale: CELLULAR
description: >-
With no lectin-pathway C4 cleavage, complement opsonins are not deposited by
this route, and complement-receptor-mediated uptake of the organism by
neutrophils and macrophages is correspondingly reduced. This is the
mechanism the classification of MASP-2 deficiency as a primary
immunodeficiency assumes. Whether it produces measurable susceptibility in
people is the entry's central open question: the classical and alternative
pathways still opsonise, and the evidence below runs both ways.
cell_types:
- preferred_term: Neutrophil
term:
id: CL:0000775
label: neutrophil
- preferred_term: Macrophage
term:
id: CL:0000235
label: macrophage
biological_processes:
- preferred_term: opsonization
term:
id: GO:0008228
label: opsonization
modifier: DECREASED
- preferred_term: phagocytosis
term:
id: GO:0006909
label: phagocytosis
modifier: DECREASED
evidence:
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
quote_role: BACKGROUND
directness: INDIRECT
snippet: "Its deficiency is classified as a primary immunodeficiency associated to pyogenic bacterial infections, inflammatory lung disease, and autoimmunity."
explanation: >-
Records the standing classification that this node represents. The
sentence reports how the deficiency is classified, not a measurement the
paper made, and the same paper's own conclusion is curated as the REFUTE
item below.
- reference: PMID:17984804
reference_title: "Deficiency of mannose-binding lectin-associated serine protease-2 associated with increased risk of fever and neutropenia in pediatric cancer patients."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
directness: INDIRECT
snippet: "In this study, MASP-2 deficiency was associated with an increased risk of FN in children treated with chemotherapy for cancer."
explanation: >-
The clearest positive clinical signal in the literature, and the support
is indirect in two ways: deficiency here is a low serum MASP-2
concentration rather than a genotype, and the children were neutropenic
from chemotherapy, so the finding bears on MASP-2 as a contributory factor
under a second immune defect rather than on the deficiency alone.
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: REFUTE
evidence_source: HUMAN_CLINICAL
snippet: "Cumulative evidence suggests that MASP-2, and even other components of the LP, are largely redundant in human defenses and that individuals with MASP-2 deficiency do not seem to be particularly prone to infectious or autoimmune diseases."
explanation: >-
The conclusion of the largest targeted study of the question,
contradicting the claim that this node produces clinical susceptibility.
Curated as REFUTE rather than omitted, because the disagreement is the
state of the evidence.
- reference: PMID:25548381
reference_title: "Deficiency in mannose-binding lectin-associated serine protease-2 does not increase susceptibility to Trypanosoma cruzi infection."
supports: REFUTE
evidence_source: MODEL_ORGANISM
snippet: "Total absence of lectin pathway functional activity did not confer higher susceptibility to T. cruzi infection, suggesting that it plays a minor role in the immune response against this parasite."
explanation: >-
A MASP-2-deficient mouse line with no lectin-pathway activity at all is
not more susceptible to a pathogen the pathway recognises in vitro. One
organism in one species, so it bounds rather than settles the claim.
downstream:
- target: Recurrent Bacterial Infection
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: >-
The proposed route from the molecular lesion to the clinical phenotype
that the primary-immunodeficiency classification asserts. The edge is
contested, not established; see the attached discussion and the REFUTE
items on this node.
- target: Autoimmunity
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: >-
Impaired complement-dependent handling of microbial and altered-self
surfaces is the route by which early complement deficiencies are held to
cause autoimmunity, and it is the basis of the autoimmunity half of the
standing classification. No study of MASP-2-deficient individuals has
demonstrated it.
- name: Impaired Lectin Pathway Antiviral Activity
biological_scale: CELLULAR
description: >-
Two adults with herpes simplex encephalitis carried rare heterozygous MASP2
missense variants, G634R and R203W, which reduce or abolish secretion of the
protein and, for G634R, prevent autoactivation of the zymogen and reduce
antiviral activity in vivo. This node is a different genetic architecture
from the rest of the entry - rare heterozygous alleles in adults, not D120G
homozygosity - and the association rests on two cases, so the node records a
proposed antiviral role for the pathway rather than an established mechanism
of MASP-2 deficiency.
evidence:
- reference: PMID:31869396
reference_title: "Herpes simplex encephalitis in adult patients with MASP-2 deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
directness: INDIRECT
snippet: "Altogether, these data suggest that MASP-2 deficiency can increase susceptibility to adult HSE."
explanation: >-
The authors' own conclusion, which they state as a suggestion. Graded
INDIRECT because the inference runs from two cases plus in vitro and mouse
work to a susceptibility claim about the human deficiency state.
- reference: PMID:31869396
reference_title: "Herpes simplex encephalitis in adult patients with MASP-2 deficiency."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "a lost capability to cleave MASP-2 precursor into its active form"
explanation: >-
The functional defect measured for the G634R allele, establishing that
these are loss-of-function variants rather than incidental rare ones.
downstream:
- target: Herpes Simplex Virus Encephalitis
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: >-
Proposed on the strength of two adult cases with functionally defective
rare MASP2 alleles and a mouse model lacking the associated recognition
molecule.
phenotypes:
- category: Immunological
name: Recurrent Bacterial Infection
description: >-
Recurrent pyogenic infection is the phenotype the primary-immunodeficiency
classification of MASP-2 deficiency asserts, and the 2003 index patient
presented with it. No frequency is tagged, and that is the point of this
record: the eleven published homozygous patients have no shared
presentation, nine published homozygotes are healthy, and a study powered
to find them identified no homozygote among 1495 adults with
community-acquired pneumonia or 103 children with invasive pneumococcal
disease. Both readings are curated below.
phenotype_term:
preferred_term: Recurrent bacterial infections
term:
id: HP:0002718
label: Recurrent bacterial infections
evidence:
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
quote_role: BACKGROUND
snippet: "Its deficiency is classified as a primary immunodeficiency associated to pyogenic bacterial infections, inflammatory lung disease, and autoimmunity."
explanation: >-
The standing classification that attributes pyogenic infection to this
deficiency, quoted from the reviewing paper's framing of the field rather
than from its own result.
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: REFUTE
evidence_source: HUMAN_CLINICAL
snippet: "a total of eleven patients with a highly heterogeneous range of disorders and nine healthy controls"
explanation: >-
Eleven affected individuals with no shared phenotype against nine healthy
homozygotes is not the distribution a penetrant infection phenotype
produces, which is why no frequency band is tagged on this record.
- reference: PMID:19307021
reference_title: "Mannan-binding lectin-associated serine protease-2 (MASP-2) in a large cohort of neonates and its clinical associations."
supports: REFUTE
evidence_source: HUMAN_CLINICAL
snippet: "That group had a shorter mean gestational age and a higher incidence of premature and low birthweight babies, but not of perinatal infections when compared with the others."
explanation: >-
In 1788 neonates, biochemically MASP-2-deficient babies had no excess of
perinatal infection. The deficiency here is defined by serum
concentration, not genotype, so it bears on low MASP-2 generally rather
than on the homozygous state specifically.
- reference: PMID:15654829
reference_title: "Deficiency of the mannan-binding lectin pathway of complement and poor outcome in cystic fibrosis: bacterial colonization may be decisive for a relationship."
supports: REFUTE
evidence_source: HUMAN_CLINICAL
snippet: "No correlation to reduced lung function or need for lung transplantation was seen, either for MBL deficiency, MASP-2 gene mutation or reduced MBL pathway function."
explanation: >-
In a disease defined by chronic airway infection, where an opsonisation
defect would be expected to show, MASP2 genotype did not track outcome.
- category: Immunological
name: Autoimmunity
description: >-
Autoimmune and inflammatory disease was present in the index patient and is
half of the standing classification, but no study of MASP-2-deficient
individuals has borne it out. The targeted study found no p.D120G homozygote
among 186 patients with systemic lupus erythematosus. No frequency is
tagged.
phenotype_term:
preferred_term: Autoimmunity
term:
id: HP:0002960
label: Autoimmunity
evidence:
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
quote_role: BACKGROUND
snippet: "inflammatory lung disease, and autoimmunity"
explanation: >-
The autoimmunity half of the classification this record represents, quoted
from the reviewing paper's framing rather than from its own result.
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: REFUTE
evidence_source: HUMAN_CLINICAL
snippet: "individuals with MASP-2 deficiency do not seem to be particularly prone to infectious or autoimmune diseases"
explanation: >-
The study's own conclusion on the autoimmune half of the classification,
reached after genotyping a lupus cohort and reviewing every published
homozygote.
- category: Neurological
name: Herpes Simplex Virus Encephalitis
description: >-
Reported in two adults carrying rare heterozygous MASP2 loss-of-function
variants, G634R and R203W, identified in a screen of 15 adults with herpes
simplex encephalitis against 294 controls. This is not the D120G homozygous
deficiency the rest of the entry describes, and two cases cannot establish a
phenotype; the record exists so the observation is visible rather than
asserted as characteristic.
phenotype_term:
preferred_term: HSV encephalitis
term:
id: HP:0012302
label: HSV encephalitis
evidence:
- reference: PMID:31869396
reference_title: "Herpes simplex encephalitis in adult patients with MASP-2 deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
directness: INDIRECT
snippet: "Altogether, these data suggest that MASP-2 deficiency can increase susceptibility to adult HSE."
explanation: >-
The authors state the association as a suggestion drawn from two cases
plus supporting functional and mouse data, which is why the support is
graded indirect and no frequency is tagged.
prevalence:
- population: Europeans
measure_type: UNKNOWN
rate_low: 70.0
rate_high: 140.0
notes: >-
7 to 14 per 10,000 Europeans, which is the frequency of the p.D120G
homozygous genotype rather than of a clinical phenotype. measure_type is
UNKNOWN for that reason: most carriers of this genotype identified so far
were found in control groups and were healthy, so reading the figure as a
disease prevalence would assert the penetrance this entry records as
unsettled.
No prevalence_class is set. The range straddles a band boundary - 7 per
10,000 is below 1 in 1,000 and 14 per 10,000 is above it - so any single
band would be a choice the source does not support. Only the range bounds
(rate_low/rate_high) are recorded; no single rate_per_100000 is set, because
the source gives a range and not a point estimate.
evidence:
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "occurs in 7 to 14/10,000 individuals"
explanation: >-
The source of the range this record normalizes to cases per 100,000.
biochemical:
- name: Serum MASP-2 concentration
presence: DECREASED
notes: >-
The screening abnormality. There is no single agreed cut-off: a neonatal
cohort set deficiency at below 42 ng/ml in cord serum while a paediatric
oncology study used below 200 ng/mL, and normal medians differ severalfold
between populations. A low concentration is not the same claim as the
homozygous genotype, and several of the clinical associations in this entry
were made on concentration rather than on genotype.
evidence:
- reference: PMID:19307021
reference_title: "Mannan-binding lectin-associated serine protease-2 (MASP-2) in a large cohort of neonates and its clinical associations."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Neonates with MASP-2 concentrations below 42 ng/ml were deemed to be MASP-2 deficient."
explanation: >-
One of the two operational definitions in use, and the one applied in the
largest cohort.
- reference: PMID:17252003
reference_title: "Deficiency of mannan-binding lectin associated serine protease-2 due to missense polymorphisms."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The MASP-2 levels were lowest in Africans from Zambia"
explanation: >-
Supports the caveat that normal ranges differ by population, so a single
numeric threshold does not transfer between cohorts.
- name: Lectin pathway functional activity
presence: DECREASED
notes: >-
The functional counterpart of the concentration measurement, and the one
that distinguishes a deficiency state from a merely low level: homozygotes
have no lectin-pathway activity, whereas heterozygotes have reduced protein
with preserved activity.
The two cohorts cited below disagree on heterozygote function. The neonatal
cohort (PMID:19307021) found heterozygosity lowered the protein but not
pathway activity; the cystic fibrosis cohort (PMID:15654829) found pathway
function reduced in carriers of a mutant MASP-2 allele, who in that series
were mostly heterozygous. The disagreement is left standing rather than
resolved, because the two measured different populations with different
assays.
evidence:
- reference: PMID:19307021
reference_title: "Mannan-binding lectin-associated serine protease-2 (MASP-2) in a large cohort of neonates and its clinical associations."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Heterozygosity for this allele significantly influenced the protein concentration, but not the lectin pathway of complement activity"
explanation: >-
Establishes that concentration and function come apart in heterozygotes,
which is why both measurements are curated.
- reference: PMID:15654829
reference_title: "Deficiency of the mannan-binding lectin pathway of complement and poor outcome in cystic fibrosis: bacterial colonization may be decisive for a relationship."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "MBL pathway function in serum was reduced both in MBL-deficient patients and in patients carrying a mutant MASP-2 allele"
explanation: >-
Measured reduction of pathway function in serum from carriers of a mutant
MASP2 allele.
genetic:
- name: MASP2
gene_term:
preferred_term: MASP2
term:
id: hgnc:6902
label: MASP2
relationship_type: CAUSATIVE
variant_origin: GERMLINE
notes: >-
p.D120G is the allele behind essentially every reported European case. Other
MASP2 missense alleles lower the protein or its activity without abolishing
pathway function - V377A lowers serum levels with normal enzyme activity,
P126L gives serum that is non-functional in homozygotes (PMID:17252003)
although recombinant P126L cleaves C4 with activity comparable to wild-type
(PMID:19234189) - the two results are reported together rather than
reconciled - R439H binds mannose-binding lectin but cannot autoactivate and
is common in sub-Saharan Africa - so a MASP2 variant and MASP-2 deficiency
are not interchangeable.
The geographic distribution of the D120G allele has been read as selection
for low lectin-pathway activity: a Siberian survey found it commoner in
Russians than in the Nenets and Dolgan-Nganasan aboriginal populations. That
is a hypothesis the authors advance, not a demonstrated history.
No ClinGen gene-disease validity assertion is recorded here because none was
found for this pair; gene_disease_validity is left absent rather than filled
with a curator's own tier.
evidence:
- reference: PMID:31828694
reference_title: "Should MASP-2 Deficiency Be Considered a Primary Immunodeficiency? Relevance of the Lectin Pathway."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "In Europeans, MASP-2 deficiency, due to homozygosity for c.359A > G"
explanation: >-
Names the gene and the allele whose homozygosity defines the deficiency.
- reference: PMID:19234189
reference_title: "Polymorphisms in mannan-binding lectin (MBL)-associated serine protease 2 affect stability, binding to MBL, and enzymatic activity."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "In contrast, the R439H variant was deficient in this process despite its normal binding to MBL."
explanation: >-
Supports the notes' claim that MASP2 carries several functionally distinct
alleles, of which D120G is one, with different molecular consequences.
- reference: PMID:36574978
reference_title: "Ficolin-3 and MASP-2 gene variants in Siberian arctic populations: Summarized evidence of selective pressure for the high frequency of lectin complement pathway deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The prevalence of the rs72550870*G allele in the MASP2 gene associated with low serum protease activity was found to be increased in Russians compared with Nenets and Dolgan-Nganasans"
explanation: >-
The population-distribution observation behind the selection hypothesis
recorded in the notes.
variants:
- name: p.D120G
description: >-
MASP2 c.359A>G, rs72550870. Abolishes association with mannose-binding
lectin and so prevents lectin-pathway C4 cleavage; homozygosity is the
deficiency state.
clinical_significance: PATHOGENIC
evidence:
- reference: PMID:19234189
reference_title: "Polymorphisms in mannan-binding lectin (MBL)-associated serine protease 2 affect stability, binding to MBL, and enzymatic activity."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "We found that D120G and CHNHdup could not associate with MBL"
explanation: >-
The functional consequence on which the pathogenic classification of
this allele rests. The clinical consequence of carrying two copies is
what this entry records as unsettled; the molecular consequence is not
in dispute.
discussions:
- discussion_id: masp2_complete_lesion_without_penetrance
kind: KNOWLEDGE_GAP
attaches_to:
- pathophysiology#Reduced Lectin Pathway Opsonization of Microbial Surfaces
- phenotypes#Recurrent Bacterial Infection
prompt: >-
Why does a complete, non-redundant block of the lectin pathway produce no
consistent clinical phenotype, when comparably complete blocks of the
classical and terminal pathways produce characteristic ones?
rationale: >-
The usual explanation offered for an unpenetrant lectin-pathway deficiency
is redundancy among the recognition molecules: lose ficolin-3 and
mannose-binding lectin still initiates. That explanation is unavailable
here. MASP-2 is the only protease that cleaves C4, so D120G homozygotes have
no lectin-pathway activity by any route, and they are still mostly healthy.
The remaining candidates are redundancy of the whole pathway against the
classical and alternative pathways, an effect too small for the cohorts
assembled so far, or an effect confined to people with a second immune
defect.
The third is the one with a positive signal behind it: the febrile
neutropenia association was found in children already neutropenic from
chemotherapy. What would discriminate the three is a cohort of genotyped
homozygotes followed prospectively, with any second immune defect recorded,
rather than homozygotes recovered by chance from case-control studies -
which is how almost every published individual was found.
- discussion_id: masp2_rare_variants_versus_d120g
kind: KNOWLEDGE_GAP
attaches_to:
- pathophysiology#Impaired Lectin Pathway Antiviral Activity
- phenotypes#Herpes Simplex Virus Encephalitis
prompt: >-
Do rare heterozygous MASP2 loss-of-function alleles belong to the same
disease concept as D120G homozygosity?
rationale: >-
The herpes simplex encephalitis report is titled as MASP-2 deficiency, but
its two patients are heterozygous for rare alleles that reduce secretion or
block autoactivation, not homozygous for D120G. Heterozygotes for D120G have
reduced MASP-2 protein with preserved pathway function, so if the
encephalitis association is real it is unlikely to act through the same
complete-pathway-loss mechanism, and may reflect a dominant-negative effect
or a quantitative threshold specific to antiviral defence.
dismech curates both under this entry because MONDO carries one term, but
the two arms are kept as separate nodes and the phenotype record states
which genotype it came from. Resolving this needs the two adults' alleles
tested for pathway function in heterozygous serum, and D120G homozygotes
assessed for herpes simplex encephalitis risk - neither of which has been
done.
notes: >-
The entry's literature was assembled directly from PubMed rather than from a
narrative deep-research report: the configured Falcon/Edison provider failed
authentication on two attempts. The committed Asta report
(research/Immunodeficiency_Due_To_MASP-2_Deficiency-deep-research-asta.md) is
retrieval-only and surfaced no MASP-2 source this entry does not already
cite - its retrieval is dominated by unrelated immunodeficiency and
proteomics papers, which its own 16-of-36 on-topic count reflects. Every
claim here is cited from a reference fetched into references_cache.
Four sources that bear directly on this disease carry no abstract in PubMed
and so could not be quoted: the 2003 index case report PMID:12904520, the
low-penetrance letter PMID:17137870, the Polish homozygote case report
PMID:24332888 and the tuberculosis case series PMID:24658431. Their content
reaches this entry only through PMID:31828694, which reviews all of them, and
claims that exist only in those papers - the index patient's individual
features, the single-case descriptions - are deliberately left uncurated
rather than cited to a text that cannot be checked.
The counts quoted in the description and the discussions - eleven affected
homozygotes, nine healthy ones, the cohort sizes - come from PMID:31828694,
whose abstract states the eleven-and-nine figure and the cohort sizes. The
per-individual breakdown sits in that paper's tables rather than its abstract,
so it is described here and not quoted as an evidence snippet.
No GeneReviews chapter exists for this disease: `just check-genereviews`
reports NO_CHAPTER against the entry's name, its synonyms and its MONDO term,
against the committed Bookshelf index.
No treatments are curated. Nothing in the literature reviewed describes a
treatment of MASP-2 deficiency itself, and for a deficiency whose clinical
consequence is unsettled, writing one in from general complement-deficiency
practice would assert a disease needing treatment.
Deep research results are used as seeds for research; they do not undergo the same validation as the main records and may contain errors. How we use deep research.
Record notes
The entry's literature was assembled directly from PubMed rather than from a narrative deep-research report: the configured Falcon/Edison provider failed authentication on two attempts. The committed Asta report (research/Immunodeficiency_Due_To_MASP-2_Deficiency-deep-research-asta.md) is retrieval-only and surfaced no MASP-2 source this entry does not already cite - its retrieval is dominated by unrelated immunodeficiency and proteomics papers, which its own 16-of-36 on-topic count reflects. Every claim here is cited from a reference fetched into references_cache. Four sources that bear directly on this disease carry no abstract in PubMed and so could not be quoted: the 2003 index case report PMID:12904520, the low-penetrance letter PMID:17137870, the Polish homozygote case report PMID:24332888 and the tuberculosis case series PMID:24658431. Their content reaches this entry only through PMID:31828694, which reviews all of them, and claims that exist only in those papers - the index patient's individual features, the single-case descriptions - are deliberately left uncurated rather than cited to a text that cannot be checked. The counts quoted in the description and the discussions - eleven affected homozygotes, nine healthy ones, the cohort sizes - come from PMID:31828694, whose abstract states the eleven-and-nine figure and the cohort sizes. The per-individual breakdown sits in that paper's tables rather than its abstract, so it is described here and not quoted as an evidence snippet. No GeneReviews chapter exists for this disease: `just check-genereviews` reports NO_CHAPTER against the entry's name, its synonyms and its MONDO term, against the committed Bookshelf index. No treatments are curated. Nothing in the literature reviewed describes a treatment of MASP-2 deficiency itself, and for a deficiency whose clinical consequence is unsettled, writing one in from general complement-deficiency practice would assert a disease needing treatment.
Create: Immunodeficiency_Due_To_MASP-2_Deficiency · 2026-10-15T02:37:13Z · View source
New Mendelian entry for MASP-2 deficiency (MONDO:0013423, MASP2 hgnc:6902), curated against claim issue #14249 and replacing stubs/Immunodeficiency_Due_To_MASP-2_Deficiency.yaml. Deep research was unavailable: 'just research-disorder falcon' failed twice with 'Edison authentication failed' (503), so the literature was assembled directly from PubMed via the PubMed MCP tools and E-utilities, and every reference was fetched with 'just fetch-reference'. Curated content: a four-node pathograph running from the p.D120G loss of binding to mannose-binding lectin, through failure of lectin-pathway C4 cleavage, to reduced opsonisation and (separately, and flagged as a different genetic architecture) impaired antiviral activity; three phenotypes, all causally connected; a European genotype-frequency prevalence record; two biochemical markers; one MASP2 genetic record with the p.D120G variant; and two KNOWLEDGE_GAP discussions. The central curation decision is that clinical penetrance is unsettled and the entry says so rather than taking a side. Four evidence items are REFUTE: the targeted study's own redundancy conclusion (PMID:31828694) against both the infection and the autoimmunity phenotype, the neonatal cohort finding no excess perinatal infection (PMID:19307021), the cystic fibrosis cohort finding no outcome effect of MASP2 genotype (PMID:15654829), and the MASP-2-deficient mouse line not more susceptible to T. cruzi (PMID:25548381). No frequency band is tagged on any phenotype, and the prevalence record uses measure_type UNKNOWN with no prevalence_class, because the figure is a genotype frequency and the 7-14/10,000 range straddles a band boundary. Four papers that bear directly on the disease (PMID:12904520 index case, PMID:17137870, PMID:24332888, PMID:24658431) have no abstract in PubMed, so nothing is cited to them; this is recorded in the entry notes and claims unique to them are left uncurated. 'just check-genereviews' reports NO_CHAPTER for both name and synonyms. No treatments are curated, for the reason given in notes. kb/groupings/Complement_Deficiency_IEIs.yaml gains a member row for this entry (the lectin-pathway enzyme row beside the ficolin-3 recognition-molecule row) plus one stale-sentence fix in its notes; the edit was deliberately kept to the MASP2 row because a sibling PR is adding a C3 row to the same file. Validation: just validate, validate-terms, count-verified-snippets (29/29), check-entity-refs, check-causal-targets, check-duplicate-keys, check-qualifier-terms, check-enum-values, check-block-scalar-comments, check-coarse-phenotypes, check-term-cache-integrity and validate-disorders all pass; just validate-grouping and just check-groupings pass on the grouping with the new member SATISFIED.
This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.Checked with linkml-reference-validator 0.3.0.
| Outcome | Count |
|---|---|
| References checked | 36 |
| Resolved | 36 |
| Unresolved (possible confabulation) | 0 |
| Unverifiable | 0 |
| References weighed for topical relevance | 36 |
| On topic | 16 |
| Off topic | 0 |
All extracted references resolved successfully.
No ontology term identifiers were found in this report.