Hypertrophic cardiomyopathy 15 (CMH15) is the VCL-attributed form of familial hypertrophic cardiomyopathy. VCL encodes two proteins from one gene: vinculin, expressed ubiquitously, and metavinculin, a splice isoform carrying a 68-residue insert in the C-terminal tail encoded by exon 19 and restricted to cardiac and smooth muscle. Both localize to the sites where the actin cytoskeleton is anchored to the membrane, so the proposed lesion is one of force transmission and cytoskeletal anchorage rather than of the contractile apparatus itself. The vinculin tail binds F-actin and dimerizes to bundle filaments into thick fibers; the metavinculin tail binds F-actin but cannot bundle it, severs filaments instead, and inhibits vinculin-mediated bundling, so metavinculin acts as a tuner of vinculin's actin-organizing activity. The cardiomyopathy-associated insert variants destabilize the conformational sub-domain that mediates that inhibition: they neither bundle normally nor restrain vinculin, and instead promote large, disordered actin assemblies. Myectomy tissue from the two reported probands showed vinculin and metavinculin markedly reduced at the intercalated disc with preserved Z-disc staining, and both had severely obstructive mid-ventricular hypertrophy, with apical involvement in one of the two. The gene-disease relationship is disputed, and this entry is curated on that footing rather than as an established cause. ClinGen's Hereditary Cardiovascular Disease Gene Curation Expert Panel reclassified VCL-hypertrophic cardiomyopathy from Limited to Disputed in May 2023: only two probands were ever reported, both in 2006 from one group, and the two missense variants carried by them are more common in gnomAD than the panel's pathogenicity cutoff allows. The intercalated-disc depletion seen in those probands was subsequently found in obstructive hypertrophic cardiomyopathy and aortic stenosis generally, so it tracks outflow obstruction rather than VCL genotype and cannot serve as VCL-specific corroboration. VCL's well-supported cardiac association is with dilated cardiomyopathy, which ClinGen rates Strong, and the best-characterized variant, p.Arg975Trp, has been reported in both hypertrophic and dilated presentations. CMH15 should therefore be read as a molecularly plausible but clinically unconfirmed entity: the metavinculin biochemistry is solid, the human genetic evidence that it causes hypertrophic cardiomyopathy is not.
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Conditions with similar clinical presentations that must be differentiated from Hypertrophic Cardiomyopathy 15:
name: Hypertrophic Cardiomyopathy 15
creation_date: "2026-09-08T00:00:00Z"
synonyms:
- CMH15
- cardiomyopathy, familial hypertrophic, 15
- VCL-related hypertrophic cardiomyopathy
- metavinculin hypertrophic cardiomyopathy
description: >-
Hypertrophic cardiomyopathy 15 (CMH15) is the VCL-attributed form of familial
hypertrophic cardiomyopathy. VCL encodes two proteins from one gene: vinculin,
expressed ubiquitously, and metavinculin, a splice isoform carrying a
68-residue insert in the C-terminal tail encoded by exon 19 and restricted to
cardiac and smooth muscle. Both localize to the sites where the actin
cytoskeleton is anchored to the membrane, so the proposed lesion is one of
force transmission and cytoskeletal anchorage rather than of the contractile
apparatus itself. The vinculin tail binds F-actin and dimerizes to bundle
filaments into thick fibers; the metavinculin tail binds F-actin but cannot
bundle it, severs filaments instead, and inhibits vinculin-mediated bundling,
so metavinculin acts as a tuner of vinculin's actin-organizing activity. The
cardiomyopathy-associated insert variants destabilize the conformational
sub-domain that mediates that inhibition: they neither bundle normally nor
restrain vinculin, and instead promote large, disordered actin assemblies.
Myectomy tissue from the two reported probands showed vinculin and
metavinculin markedly reduced at the intercalated disc with preserved Z-disc
staining, and both had severely obstructive mid-ventricular hypertrophy, with
apical involvement in one of the two.
The gene-disease relationship is disputed, and this entry is curated on that
footing rather than as an established cause. ClinGen's Hereditary
Cardiovascular Disease Gene Curation Expert Panel reclassified VCL-hypertrophic
cardiomyopathy from Limited to Disputed in May 2023: only two probands were
ever reported, both in 2006 from one group, and the two missense variants
carried by them are more common in gnomAD than the panel's pathogenicity
cutoff allows. The intercalated-disc depletion seen in those probands was
subsequently found in obstructive hypertrophic cardiomyopathy and aortic
stenosis generally, so it tracks outflow obstruction rather than VCL genotype
and cannot serve as VCL-specific corroboration. VCL's well-supported cardiac
association is with dilated cardiomyopathy, which ClinGen rates Strong, and the
best-characterized variant, p.Arg975Trp, has been reported in both hypertrophic
and dilated presentations. CMH15 should therefore be read as a molecularly
plausible but clinically unconfirmed entity: the metavinculin biochemistry is
solid, the human genetic evidence that it causes hypertrophic cardiomyopathy is
not.
category: Mendelian
classifications:
harrisons_chapter:
- classification_value: CARDIOVASCULAR
- classification_value: GENETICS_ENVIRONMENT_DISEASE
disease_term:
preferred_term: hypertrophic cardiomyopathy 15
term:
id: MONDO:0013200
label: hypertrophic cardiomyopathy 15
parents:
- Hypertrophic Cardiomyopathy
- Cardiovascular Disease
- Genetic Disorder
mappings:
mondo_mappings:
- term:
id: MONDO:0013200
label: hypertrophic cardiomyopathy 15
mapping_predicate: skos:exactMatch
mapping_source: MONDO
mapping_justification: >-
Primary MONDO identifier for the CMH15 entity (OMIM:613255), the
VCL-attributed locus of familial hypertrophic cardiomyopathy.
prevalence:
- population: Worldwide published cases
measure_type: CASES_IN_LITERATURE
prevalence_class: ULTRA_RARE
notes: >-
No population prevalence estimate exists, and none can be derived, because
the gene-disease relationship is disputed. The entire published case base is
two unrelated probands, both reported by one group in 2006 from Mayo Clinic
hypertrophic cardiomyopathy cohorts that had already been screened negative
for the common myofilament genes. The denominators are informative even though
the numerator is not: one novel VCL missense variant in 228 genotype-negative
probands, and three non-synonymous exon-19 variants across four patients among
389 clinically diagnosed probands, of which one (R975W) was carried forward as
causal. A separate Z-disc series from the same centre found VCL variants in 2
of 239 myofilament-negative probands; whether those are the same two probands
is not stated, and the cohorts overlap.
evidence:
- reference: CGGV:assertion_27365fd2-1203-4e2b-8830-3277e965d8bc-2023-05-10T160000.000Z
reference_title: VCL / hypertrophic cardiomyopathy (Disputed)
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Although variants in this gene have been reported in only two probands with
hypertrophic cardiomyopathy, an association with dilated cardiomyopathy
(DCM) has been assessed separately with a higher number or reported
probands.
explanation: >-
ClinGen's own count of the published hypertrophic cardiomyopathy case base
for VCL, which is what fixes this entity at the case-report tier.
inheritance:
- name: Autosomal dominant inheritance
inheritance_term:
preferred_term: Autosomal dominant inheritance
term:
id: HP:0000006
label: Autosomal dominant inheritance
description: >-
CMH15 is catalogued as an autosomal dominant trait, and ClinGen curated the
VCL-hypertrophic cardiomyopathy relationship under an autosomal dominant mode
of inheritance. The assignment rests on the catalogue classification and on
the dominant pattern established for VCL in dilated cardiomyopathy rather
than on segregation in hypertrophic cardiomyopathy families: both reported
probands were ascertained as isolated cases from screening cohorts, and no
multi-generation hypertrophic cardiomyopathy pedigree segregating a VCL
variant has been published.
evidence:
- reference: CGGV:assertion_27365fd2-1203-4e2b-8830-3277e965d8bc-2023-05-10T160000.000Z
reference_title: VCL / hypertrophic cardiomyopathy (Disputed)
supports: SUPPORT
evidence_source: OTHER
snippet: "| VCL | HGNC:12665 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Disputed | SOP9 | Hereditary Cardiovascular Disease Gene Curation Expert Panel | 2023-05-10T16:00:00.000Z |"
explanation: >-
Records the mode of inheritance under which the relationship was curated
(AD) together with the Disputed classification, which is why the inheritance
claim is catalogue-derived rather than pedigree-derived.
genetic:
- name: VCL
presence: PRESENT
relationship_type: DISPUTED
variant_origin: GERMLINE
gene_term:
preferred_term: VCL
term:
id: hgnc:12665
label: VCL
notes: >-
VCL encodes vinculin and, through inclusion of the alternatively spliced exon
19, the muscle-restricted isoform metavinculin. Two classes of variant have
been attributed to hypertrophic cardiomyopathy, in different parts of the
protein: p.Leu277Met in a region shared by both isoforms, and exon-19
substitutions (p.Ala934Val, p.Pro943Ala, p.Arg975Trp) falling inside the
68-residue metavinculin-specific insert. p.Arg975Trp is the best characterized
and had already been reported in dilated cardiomyopathy, so one substitution
has been assigned to both remodelling directions.
relationship_type is DISPUTED, the enum value corresponding to ClinGen
"Disputed" or "Refuted". CAUSATIVE would be wrong: it is defined as ClinGen
Definitive or Strong, and a prose caveat under a CAUSATIVE value would not
survive export, query, or any consumer that reads the structured field rather
than this note. MONDO and OMIM do assert the entity; that assertion is carried
by the entry existing and by disease_term, not by overstating this slot.
ClinGen classifies VCL-hypertrophic cardiomyopathy as Disputed (Hereditary
Cardiovascular Disease GCEP, 2023-05-10, changed from Limited) while rating
VCL-dilated cardiomyopathy Strong (Dilated Cardiomyopathy GCEP, 2024-08-09).
A VCL variant found in a cardiomyopathy proband is therefore interpretable for
dilated cardiomyopathy and not for hypertrophic cardiomyopathy. See the REFUTE
evidence below and the discussions section; do not cite this block as support
for clinical reporting of a VCL variant in a hypertrophic cardiomyopathy case.
evidence:
- reference: PMID:16712796
reference_title: A missense mutation in a ubiquitously expressed protein, vinculin, confers susceptibility to hypertrophic cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
A novel missense mutation, L277M-VCL, involving a conserved residue was
identified in a patient with severely obstructive, mid-ventricular
hypertrophy. This mutation was not detected in 400 reference alleles.
explanation: >-
The primary report of the vinculin variant on which the entity's non-insert
arm rests, with its contemporaneous control-allele screen.
- reference: PMID:16236538
reference_title: Identification of a metavinculin missense mutation, R975W, associated with both hypertrophic and dilated cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Overall, 3 non-synonymous single nucleotide polymorphisms (A934V, P943A, and
R975W) were detected in 4 patients. One patient with severely obstructive,
mid-ventricular and apical hypertrophy harbored the previously published
DCM-associated mutation, R975W.
explanation: >-
Names the exon-19 variants found in the hypertrophic cohort and identifies
the single proband whose variant was carried forward as causal.
- reference: PMID:16236538
reference_title: Identification of a metavinculin missense mutation, R975W, associated with both hypertrophic and dilated cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
However, this study demonstrates that the same fundamental mutation in
humans can yield either cardiomyopathic phenotype, underscoring a critical
role for modifier genes and/or environmental stressors in cardiac
remodeling.
explanation: >-
States the allelism directly: one VCL substitution has been reported with
both hypertrophic and dilated remodelling, so genotype alone does not
specify which entity results.
- reference: CGGV:assertion_2d46699a-5f8c-460d-9233-bec4e2ecf560-2024-08-09T160000.000Z
reference_title: VCL / dilated cardiomyopathy (Strong)
supports: NO_EVIDENCE
evidence_source: OTHER
snippet: "VCL | HGNC:12665 | dilated cardiomyopathy | MONDO:0005021 | AD | Strong"
explanation: >-
NO_EVIDENCE because this record is about a different disease. It establishes
the contrasting, well-supported VCL cardiac association against which this
entity's disputed status should be read, and bears on this entry's claim only
by contrast; it is not evidence that VCL causes hypertrophic cardiomyopathy.
- reference: CGGV:assertion_27365fd2-1203-4e2b-8830-3277e965d8bc-2023-05-10T160000.000Z
reference_title: VCL / hypertrophic cardiomyopathy (Disputed)
supports: REFUTE
evidence_source: OTHER
snippet: >-
Two missense variants from these initial publications have been reported in
humans, but the frequency in gnomAD is above the cutoff for pathogenicity in
this GCEP.
explanation: >-
Contradicts the causal claim directly: population frequency of the two
reported variants is incompatible with them causing a rare dominant
cardiomyopathy. This is the specific finding that moved the classification
to Disputed.
- reference: CGGV:assertion_27365fd2-1203-4e2b-8830-3277e965d8bc-2023-05-10T160000.000Z
reference_title: VCL / hypertrophic cardiomyopathy (Disputed)
supports: REFUTE
evidence_source: OTHER
snippet: >-
In summary, the evidence supporting the relationship between VCL and
autosomal dominant hypertrophic cardiomyopathy has been disputed and no
valid evidence remains to support the claim.
explanation: >-
The expert panel's summary verdict on the gene-disease relationship that
defines this entity.
pathophysiology:
- name: VCL Missense Variant in Vinculin or the Metavinculin Insert
biological_scale: MOLECULAR
mechanism_confidence: HYPOTHETICAL
description: >-
The proposed initiating lesion is a heterozygous germline missense
substitution in VCL. Two locations have been implicated and they are not
equivalent. p.Leu277Met lies in a region present in both vinculin and
metavinculin, so it would perturb the ubiquitous protein as well as the
cardiac isoform. p.Ala934Val, p.Pro943Ala and p.Arg975Trp lie inside the
68-residue insert encoded by exon 19, which is present only in metavinculin,
so their effect is restricted to cardiac and smooth muscle. Whether either
class is pathogenic in hypertrophic cardiomyopathy is disputed, which is why
this node and everything downstream of it are marked HYPOTHETICAL.
genetic_context:
variant_origin: GERMLINE
zygosity: HETEROZYGOUS
allele_type: MISSENSE
functional_impact_category: GAIN_OF_FUNCTION
notes: >-
GAIN_OF_FUNCTION follows ClinGen's reading of the biochemical data: the
mutant metavinculin tails do not simply lose their inhibitory function, they
acquire the ability to drive formation of large disordered actin assemblies
that neither wild-type isoform produces. Note that this is the mechanism
proposed for the exon-19 insert variants; no functional characterization of
p.Leu277Met has been published, so the category is extrapolated to that
allele rather than measured for it.
genes:
- preferred_term: VCL
term:
id: hgnc:12665
label: VCL
cell_types:
- preferred_term: cardiac muscle cell
term:
id: CL:0000746
label: cardiac muscle cell
downstream:
- target: Loss of Metavinculin Restraint on Vinculin-Mediated Actin Bundling
causal_link_type: DIRECT
evidence:
- reference: PMID:30844403
reference_title: Cardiomyopathy Mutations in Metavinculin Disrupt Regulation of Vinculin-Induced F-Actin Assemblies.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Sub-domain formation is destabilized by CM mutations, disrupting this
inhibitory mechanism.
explanation: >-
States the causal step from the variant to loss of the inhibitory
mechanism, which is the edge drawn here.
evidence:
- reference: CGGV:assertion_27365fd2-1203-4e2b-8830-3277e965d8bc-2023-05-10T160000.000Z
reference_title: VCL / hypertrophic cardiomyopathy (Disputed)
supports: SUPPORT
evidence_source: OTHER
snippet: >-
The mechanism for disease is believed to be gain-of-function, with mutants
both failing to induce F-actin binding and promoting formation of large
actin assemblies with linear bundles (PMID: 30844403).
explanation: >-
Records the proposed mechanism class for this node, and the hedge
("believed to be") that justifies the HYPOTHETICAL confidence.
- name: Loss of Metavinculin Restraint on Vinculin-Mediated Actin Bundling
biological_scale: MOLECULAR
mechanism_confidence: PROVISIONAL
description: >-
In the normal heart the two VCL isoforms are co-expressed at
sub-stoichiometric ratio and do opposite things to actin. The vinculin tail
binds F-actin and dimerizes to bundle filaments into thick fibers; the
metavinculin tail binds F-actin the same way but cannot bundle it, severs
filaments instead, and inhibits vinculin-mediated bundling. That inhibition
requires a protruding sub-domain formed by the 68-residue insert, which
sterically blocks vinculin tail dimerization. The cardiomyopathy variants
destabilize the sub-domain, so the brake is released and mutant metavinculin
no longer restrains vinculin.
molecular_functions:
- preferred_term: metavinculin-mediated actin filament severing
term:
id: GO:0003789
label: actin filament severing activity
biological_processes:
- preferred_term: vinculin-mediated actin filament bundling
term:
id: GO:0051017
label: actin filament bundle assembly
modifier: GAIN_OF_FUNCTION
downstream:
- target: Disordered F-Actin Assembly at the Membrane Anchor
causal_link_type: DIRECT
evidence:
- reference: PMID:30844403
reference_title: Cardiomyopathy Mutations in Metavinculin Disrupt Regulation of Vinculin-Induced F-Actin Assemblies.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
These CM mutants were found to weakly induce the formation of disordered
F-actin assemblies. Notably, they fail to inhibit Vt-mediated F-actin
bundling and instead promote formation of large assemblies embedded with
linear bundles.
explanation: >-
Directly links the loss of inhibition to the disordered assemblies that
the downstream node names.
evidence:
- reference: PMID:30844403
reference_title: Cardiomyopathy Mutations in Metavinculin Disrupt Regulation of Vinculin-Induced F-Actin Assemblies.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
While MVt binds to F-actin in a similar manner to Vt, MVt is incapable of
F-actin bundling and inhibits Vt-mediated F-actin bundling.
explanation: >-
Establishes the wild-type inhibitory relationship between the two isoform
tails, which is what the variants disrupt.
- reference: PMID:30844403
reference_title: Cardiomyopathy Mutations in Metavinculin Disrupt Regulation of Vinculin-Induced F-Actin Assemblies.
supports: SUPPORT
evidence_source: COMPUTATIONAL
snippet: >-
Computational models of MVt bound to F-actin suggest that MVt undergoes a
conformational change licensing the formation of a protruding sub-domain
incorporating the insert, which sterically prevents dimerization and
bundling of F-actin by Vt.
explanation: >-
Supplies the structural mechanism for the inhibition, and is graded
COMPUTATIONAL because it is a modelling result rather than a measurement.
- reference: PMID:22613835
reference_title: The C-terminal tail domain of metavinculin, vinculin's splice variant, severs actin filaments.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Unlike its splice variant, MVt did not bundle actin filaments. Instead, MVt
promoted severing of actin filaments, most efficiently at substoichiometric
concentrations.
explanation: >-
Independent demonstration of the severing activity that distinguishes the
metavinculin tail from the vinculin tail.
- reference: PMID:3129429
reference_title: Diversity of vinculin/meta-vinculin in human tissues and cultivated cells. Expression of muscle specific variants of vinculin in human aorta smooth muscle cells.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
gamma-Isoform of vinculin and both alpha- and beta-isoforms of meta-vinculin
were found in smooth (aorta wall and myometrium) and cardiac muscle, rather
than in skeletal muscle, liver, foreskin fibroblasts, and macrophages.
explanation: >-
Establishes that metavinculin expression is restricted to cardiac and smooth
muscle, which is why a variant confined to the metavinculin insert can yield
a cardiac-specific phenotype from a ubiquitously transcribed gene.
- name: Disordered F-Actin Assembly at the Membrane Anchor
biological_scale: MOLECULAR
mechanism_confidence: PROVISIONAL
description: >-
With the inhibitory brake released, the mutant tails produce large actin
assemblies embedded with linear bundles rather than the regular bundled
architecture vinculin normally builds. The actin network that couples the
contractile apparatus to the membrane is therefore built wrongly, not merely
built less.
biological_processes:
- preferred_term: actin cytoskeleton organization
term:
id: GO:0030036
label: actin cytoskeleton organization
modifier: ABNORMAL
cell_types:
- preferred_term: cardiac muscle cell
term:
id: CL:0000746
label: cardiac muscle cell
downstream:
- target: Disrupted Intercalated Disc and Costamere Anchorage
causal_link_type: DIRECT
evidence:
- reference: PMID:30844403
reference_title: Cardiomyopathy Mutations in Metavinculin Disrupt Regulation of Vinculin-Induced F-Actin Assemblies.
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
These findings provide new mechanistic insights into the ability of
metavinculin to tune actin organization by vinculin and suggest that
dysregulation of this process by CM mutants could underlie their malfunction
in disease.
explanation: >-
The authors' own statement of what the disordered assemblies are proposed to
mean for disease, with the hedge preserved.
- name: Disrupted Intercalated Disc and Costamere Anchorage
biological_scale: CELLULAR
mechanism_confidence: HYPOTHETICAL
description: >-
Vinculin and metavinculin are structural components of the junctions where
cardiomyocyte actin is anchored: the intercalated disc, which couples adjacent
myocytes end to end, and the costamere, which couples the myofibril laterally
to the sarcolemma and extracellular matrix. Myectomy tissue from both reported
probands showed vinculin and metavinculin markedly reduced at the intercalated
disc with normal Z-disc staining, and the earlier metavinculin work had shown
altered intercalated-disc organization in vivo. The specificity of that
finding is the weak point of the chain rather than its existence; see the
REFUTE evidence on this node.
biological_processes:
- preferred_term: adherens junction organization
term:
id: GO:0034332
label: adherens junction organization
modifier: ABNORMAL
- preferred_term: cell-matrix adhesion
term:
id: GO:0007160
label: cell-matrix adhesion
modifier: ABNORMAL
cell_types:
- preferred_term: cardiac muscle cell
term:
id: CL:0000746
label: cardiac muscle cell
downstream:
- target: Impaired Cardiomyocyte Force Transmission
causal_link_type: DIRECT
evidence:
- reference: PMID:16712796
reference_title: A missense mutation in a ubiquitously expressed protein, vinculin, confers susceptibility to hypertrophic cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Immunohistochemical analysis of the proband's myectomy specimen demonstrated
markedly reduced vinculin levels in the intercalated discs.
explanation: >-
The human tissue observation in the vinculin proband on which this node
rests.
- reference: PMID:16236538
reference_title: Identification of a metavinculin missense mutation, R975W, associated with both hypertrophic and dilated cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Immunohistochemical analysis of the proband's myectomy specimen revealed a
paucity of vinculin/metavinculin in the intercalated discs.
explanation: >-
The matching observation in the metavinculin proband, from a different
variant class.
- reference: PMID:16949038
reference_title: Obstructive hypertrophic cardiomyopathy is associated with reduced expression of vinculin in the intercalated disc.
supports: REFUTE
evidence_source: HUMAN_CLINICAL
snippet: >-
Tissue specimens derived from patients with obstructive HCM and aortic
stenosis (AS) showed a universal defect of vinculin/metavinculin expression
in the intercalated disc but preserved expression in the cardiac Z-disc
explanation: >-
Refutes the inference that intercalated-disc vinculin depletion is caused by
the VCL variant. The same pattern occurs in obstructive hypertrophic
cardiomyopathy without a VCL variant and in aortic stenosis, so it tracks
outflow obstruction and cannot corroborate a VCL-specific lesion.
- name: Impaired Cardiomyocyte Force Transmission
biological_scale: CELLULAR
mechanism_confidence: HYPOTHETICAL
description: >-
Consequence of a mis-built actin-membrane anchor: contractile force generated
by the sarcomere is transmitted less efficiently to neighbouring myocytes and
to the extracellular matrix. That vinculin loss impairs myocyte mechanics is
measured rather than assumed - vinculin-deficient mouse myocytes have reduced
membrane cortical stiffness, wider myofilament lattice spacing and reduced
systolic transverse strain in vivo, all before global ventricular dysfunction
appears. What is not measured is the same for a CMH15 allele: those
experiments use vinculin deletion, whereas the human variants proposed here
are missense changes acting by gain of function, so the mechanical consequence
is transferred across allele classes. The node is marked HYPOTHETICAL for that
reason rather than for lack of any evidence.
biological_processes:
- preferred_term: cardiac muscle contraction
term:
id: GO:0060048
label: cardiac muscle contraction
modifier: ABNORMAL
cell_types:
- preferred_term: cardiac muscle cell
term:
id: CL:0000746
label: cardiac muscle cell
downstream:
- target: Maladaptive Left Ventricular Hypertrophy
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:23561539
reference_title: Novel role for vinculin in ventricular myocyte mechanics and dysfunction.
supports: SUPPORT
directness: INDIRECT
evidence_source: MODEL_ORGANISM
snippet: >-
MRI revealed significantly decreased systolic strains transverse to the
myofiber axis in vivo, but no changes along the muscle fibers or in fiber
tension in papillary muscles from heterozygous global Vcl null mice.
explanation: >-
Measures a mechanical deficit attributable to reduced vinculin, and locates
it transverse to the fibre axis rather than in fibre tension. INDIRECT
because the allele is a null, not a CMH15 missense variant.
- reference: PMID:23561539
reference_title: Novel role for vinculin in ventricular myocyte mechanics and dysfunction.
supports: SUPPORT
directness: INDIRECT
evidence_source: MODEL_ORGANISM
snippet: >-
AFM in Vcl heterozygous null mouse myocytes showed a significant decrease in
membrane cortical stiffness.
explanation: >-
Gives the cell-mechanical correlate of losing the actin-membrane anchor,
which is the property this node claims is degraded.
- reference: PMID:37548861
reference_title: Heart Failure with Recovered Ejection Fraction in Patients with Vinculin Loss-of-function Variants.
supports: SUPPORT
directness: INDIRECT
evidence_source: HUMAN_CLINICAL
snippet: >-
Vinculin links the actin cytoskeleton to the cell membrane which is critical
in force transmission and is needed to maintain cardiomyocyte function
explanation: >-
States the force-transmission role this node depends on. INDIRECT: it is a
background statement in a dilated cardiomyopathy case series, not a
measurement in hypertrophic disease.
- name: Maladaptive Left Ventricular Hypertrophy
biological_scale: TISSUE
mechanism_confidence: PROVISIONAL
description: >-
The tissue-level endpoint: left ventricular hypertrophy which in the two
reported probands was severely obstructive and mid-ventricular or apical in
distribution. A separate series from the same centre found that hypertrophic
cardiomyopathy attributable to Z-disc genes, VCL among them, carries a
sigmoidal septal contour in most cases, in contrast to the reverse-curvature
morphology typical of myofilament disease.
downstream:
- target: Dynamic Outflow Obstruction
causal_link_type: DIRECT
- target: Hypertrophic cardiomyopathy
causal_link_type: DIRECT
description: >-
The tissue lesion presenting as the clinical entity both probands were
diagnosed with.
- target: Apical hypertrophy
causal_link_type: DIRECT
description: >-
Apical distribution of the hypertrophy, reported in the metavinculin proband.
evidence:
- reference: PMID:17097056
reference_title: Echocardiographic-determined septal morphology in Z-disc hypertrophic cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Thirteen of the 239 patients (5.4%) had one of 13 distinct HCM-associated
Z-disc mutations involving residues highly conserved across species and
absent in 600 reference alleles: LDB3 (6), ACTN2 (3), TCAP (1), CSRP3 (1),
and VCL (2).
explanation: >-
Places VCL within the Z-disc class of hypertrophic cardiomyopathy and gives
its share of that class in a myofilament-negative cohort.
- reference: PMID:17097056
reference_title: Echocardiographic-determined septal morphology in Z-disc hypertrophic cardiomyopathy.
supports: SUPPORT
directness: INDIRECT
evidence_source: HUMAN_CLINICAL
snippet: >-
For this subset with Z-disc-associated HCM, the septal contour was sigmoidal
in 11 (85%) and apical in 2 (15%). While Z-disc-HCM is uncommon, it is equal
in prevalence to thin filament-HCM. In contrast to myofilament-HCM, Z-disc-HCM
is associated preferentially with sigmoidal morphology.
explanation: >-
Characterizes the hypertrophy morphology of the Z-disc class as a whole.
INDIRECT because the figures are for all thirteen Z-disc probands, of whom
only two carried VCL variants, so the morphology is not resolved to VCL.
- name: Dynamic Outflow Obstruction
biological_scale: ORGANISM
mechanism_confidence: PROVISIONAL
description: >-
Both reported probands had severely obstructive hypertrophy, mid-ventricular
in one and mid-ventricular plus apical in the other. Obstruction is the point
at which this chain rejoins ordinary hypertrophic cardiomyopathy physiology,
and also the point at which the entity's key confound arises, since
obstruction itself depletes intercalated-disc vinculin. Named for the
haemodynamic mechanism rather than the finding, so that it stays distinct from
the clinical phenotype of the same name: the pathograph matches target strings
verbatim, and two nodes differing only in capitalization would render as two
nodes for one concept.
downstream:
- target: Left ventricular outflow tract obstruction
causal_link_type: DIRECT
description: >-
The clinical finding this mechanism presents as.
- target: Disrupted Intercalated Disc and Costamere Anchorage
causal_link_type: DIRECT
description: >-
Feedback edge. Obstruction reduces intercalated-disc vinculin and
metavinculin independently of genotype, which is the alternative explanation
for the probands' histology.
evidence:
- reference: PMID:16949038
reference_title: Obstructive hypertrophic cardiomyopathy is associated with reduced expression of vinculin in the intercalated disc.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
obstructive disease substantially reduces the expression of vinculin
preferentially in the intercalated disc.
explanation: >-
Supports drawing obstruction as a cause of the anchorage abnormality, which
is the reverse of the direction the original reports assumed.
evidence:
- reference: PMID:16236538
reference_title: Identification of a metavinculin missense mutation, R975W, associated with both hypertrophic and dilated cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
One patient with severely obstructive, mid-ventricular and apical hypertrophy
harbored the previously published DCM-associated mutation, R975W.
explanation: >-
Documents obstruction and its distribution in the metavinculin proband.
phenotypes:
- category: Cardiovascular
name: Hypertrophic cardiomyopathy
phenotype_term:
preferred_term: Hypertrophic cardiomyopathy
term:
id: HP:0001639
label: Hypertrophic cardiomyopathy
description: >-
The defining phenotype. Both reported probands were ascertained from clinical
hypertrophic cardiomyopathy cohorts at a single referral centre, having
already been screened negative for the common myofilament genes.
sequelae:
- target: Left ventricular outflow tract obstruction
description: >-
Both reported probands had severely obstructive disease, and obstruction is
what brought each of them to the myectomy that produced the tissue examined
in these studies.
evidence:
- reference: PMID:16236538
reference_title: Identification of a metavinculin missense mutation, R975W, associated with both hypertrophic and dilated cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
mutational analysis of the metavinculin-specific exon of vinculin (VCL, exon
19) was performed in a cohort of 389 unrelated patients with clinical HCM,
previously genotyped for the 8 most common HCM-associated myofilament-encoding
genes.
explanation: >-
Establishes that the ascertainment population, and therefore the phenotype
attached to this entity, is clinically diagnosed hypertrophic cardiomyopathy.
- category: Cardiovascular
name: Left ventricular outflow tract obstruction
phenotype_term:
preferred_term: Left ventricular outflow tract obstruction
term:
id: HP:0032092
label: Left ventricular outflow tract obstruction
severity: SEVERE
description: >-
Both reported probands had severely obstructive disease and both came to
surgical myectomy, which is how the tissue examined in these studies was
obtained. Obstruction is the most consistent clinical feature of the two-case
series, and it is also the feature that generates the entity's principal
confound, since obstruction independently depletes intercalated-disc vinculin.
evidence:
- reference: PMID:16712796
reference_title: A missense mutation in a ubiquitously expressed protein, vinculin, confers susceptibility to hypertrophic cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
A novel missense mutation, L277M-VCL, involving a conserved residue was
identified in a patient with severely obstructive, mid-ventricular
hypertrophy.
explanation: >-
Documents severe obstruction in the vinculin proband.
- reference: PMID:16236538
reference_title: Identification of a metavinculin missense mutation, R975W, associated with both hypertrophic and dilated cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
One patient with severely obstructive, mid-ventricular and apical hypertrophy
harbored the previously published DCM-associated mutation, R975W.
explanation: >-
Documents severe obstruction in the metavinculin proband.
- category: Cardiovascular
name: Apical hypertrophy
phenotype_term:
preferred_term: Apical hypertrophic cardiomyopathy
term:
id: HP:0031992
label: Apical hypertrophic cardiomyopathy
description: >-
Reported in the metavinculin proband, whose hypertrophy was mid-ventricular
and apical. Apical contour was also the minority morphology in the wider
Z-disc hypertrophic cardiomyopathy series, in 2 of 13 probands. Recorded as a
reported feature of the individual cases, not as a characteristic of the
entity, which has too few cases to have one.
evidence:
- reference: PMID:16236538
reference_title: Identification of a metavinculin missense mutation, R975W, associated with both hypertrophic and dilated cardiomyopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
One patient with severely obstructive, mid-ventricular and apical hypertrophy
harbored the previously published DCM-associated mutation, R975W.
explanation: >-
Names apical involvement in the one proband in whom it was reported.
- category: Cardiovascular
name: Sigmoidal septal contour
phenotype_term:
preferred_term: Left ventricular hypertrophy with sigmoidal septal contour
term:
id: HP:0001712
label: Left ventricular hypertrophy
description: >-
Hypertrophic cardiomyopathy attributed to Z-disc genes, VCL among them, was
preferentially sigmoidal in septal contour rather than showing the reverse
curvature typical of myofilament disease. The finding is a property of the
Z-disc class in that series and is not resolved to the two VCL probands within
it, so it is recorded here as class-level context.
It should be read against the primary reports rather than instead of them, and
the two do not agree. That series graded 11 of 13 Z-disc probands sigmoidal and
2 apical, while both VCL probands are described in their own reports as
mid-ventricular, one with apical involvement. Same group, overlapping Mayo
cohorts, so the two apical cases in the pooled series may well be the two VCL
cases - in which case the sigmoidal majority is carried by the other four genes
and does not describe VCL at all. Neither paper resolves this, and it is not
resolvable from the published data.
evidence:
- reference: PMID:17097056
reference_title: Echocardiographic-determined septal morphology in Z-disc hypertrophic cardiomyopathy.
supports: SUPPORT
directness: INDIRECT
evidence_source: HUMAN_CLINICAL
snippet: >-
In contrast to myofilament-HCM, Z-disc-HCM is associated preferentially with
sigmoidal morphology.
explanation: >-
Supports sigmoidal contour for the Z-disc class that includes VCL. INDIRECT
because the two VCL probands are pooled with eleven probands carrying
variants in four other genes.
histopathology:
- name: Reduced vinculin and metavinculin at the intercalated disc with preserved Z-disc staining
description: >-
Immunohistochemistry on the surgical myectomy specimens from both probands
showed vinculin and metavinculin markedly reduced at the intercalated disc
while Z-disc staining was normal. The compartment specificity is the
informative part of the finding. Its attribution is not: the same pattern was
subsequently found in obstructive hypertrophic cardiomyopathy without a VCL
variant and in aortic stenosis, and was absent in dilated, hypertensive and
pulmonary-hypertensive hearts, so it segregates with outflow obstruction and
not with genotype.
evidence:
- reference: PMID:16949038
reference_title: Obstructive hypertrophic cardiomyopathy is associated with reduced expression of vinculin in the intercalated disc.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Microscopic examination of both myectomy specimens from patients bearing
genetic defects in metavinculin and vinculin showed a marked reduction of
vinculin/metavinculin expression in the intercalated disc, but normal
expression in the Z-disc.
explanation: >-
The finding itself, stated for both probands together with its compartment
specificity.
- reference: PMID:16949038
reference_title: Obstructive hypertrophic cardiomyopathy is associated with reduced expression of vinculin in the intercalated disc.
supports: REFUTE
evidence_source: HUMAN_CLINICAL
snippet: >-
Tissue specimens derived from patients with obstructive HCM and aortic
stenosis (AS) showed a universal defect of vinculin/metavinculin expression
in the intercalated disc but preserved expression in the cardiac Z-disc
explanation: >-
Refutes reading the finding as a marker of the VCL lesion. The identical
pattern is universal in obstructive hypertrophic cardiomyopathy without a VCL
variant, and in aortic stenosis, so it cannot corroborate a VCL-specific
mechanism.
- reference: PMID:16949038
reference_title: Obstructive hypertrophic cardiomyopathy is associated with reduced expression of vinculin in the intercalated disc.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
whereas tissue specimens derived from patients with either DCM, hypertensive
heart disease (HTN), or pulmonary hypertension (PHTN) exhibited normal
expression of vinculin/metavinculin in both the Z- and the intercalated disc
despite being associated with hypertrophy.
explanation: >-
Supports the narrower claim that the finding is real and specific to a
compartment and an aetiology: it is absent in dilated, hypertensive and
pulmonary-hypertensive hearts, so it is not a generic consequence of
hypertrophy. It is that same specificity to obstruction which makes it
uninformative about genotype.
animal_models:
- name: Cardiomyocyte-specific vinculin knockout mouse (cVclKO)
species: Mouse
genotype: Vcl conditional null, cardiomyocyte-restricted Cre-loxP excision
publication: PMID:17785437
description: >-
Cre-loxP deletion of Vcl in cardiomyocytes. Half the animals died suddenly
before three months from ventricular tachycardia with preserved contractile
function; survivors developed dilated cardiomyopathy and died before six
months. Ultrastructure before dysfunction showed dissolution of the
intercalated disc, reduced cadherin and beta-1D integrin, and connexin-43
mislocalized to the lateral border.
evidence:
- reference: PMID:17785437
reference_title: Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
This is the first report of tissue-specific inactivation of the Vcl gene and
shows that it is required for preservation of normal cell-cell and cell-matrix
adhesive structures.
explanation: >-
Supports treating this model as informative for cardiomyocyte junctional
biology, which is the ground on which it is linked to this entry's anchorage
node.
modeled_mechanisms:
- target: Disrupted Intercalated Disc and Costamere Anchorage
relationship: RECAPITULATES
fidelity: MODERATE
model_scale: CELLULAR
description: >-
Establishes in vivo that removing cardiomyocyte vinculin dismantles exactly
the junctions this node names, and that it does so before any contractile
phenotype appears.
limitations: >-
A complete tissue-specific null, not a missense allele: it models absence of
vinculin, whereas the CMH15 variants are proposed to act by gain of function
through mutant metavinculin. Mouse hearts also express less metavinculin
relative to vinculin than human hearts do, so an insert-specific effect is
under-represented in this system.
evidence:
- reference: PMID:17785437
reference_title: Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
ultrastructural analysis of cVclKO heart tissue showed abnormal adherens
junctions with dissolution of the intercalated disc structure, expression
of the junctional proteins cadherin and beta1D integrin were reduced, and
the gap junction protein connexin 43 was mislocalized to the lateral
myocyte border
explanation: >-
The junctional lesion this link claims the model reproduces, observed
directly.
- target: Maladaptive Left Ventricular Hypertrophy
relationship: FAILS_TO_RECAPITULATE
fidelity: LOW
model_scale: ORGANISM
description: >-
The most informative negative result for this entity. Losing cardiomyocyte
vinculin in vivo produces arrhythmic sudden death and then a dilated
ventricle. It does not produce hypertrophy.
limitations: >-
The failure is not decisive against a hypertrophic mechanism, because the
allele is wrong for the question: a null cannot test a gain-of-function
missense hypothesis, and the opposite remodelling direction is what
loss-of-function VCL alleles produce in humans too. The result constrains
what can be inferred from vinculin-deficiency models about hypertrophy, and
no CMH15 knock-in mouse exists to answer the question properly.
evidence:
- reference: PMID:17785437
reference_title: Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy.
supports: REFUTE
evidence_source: MODEL_ORGANISM
snippet: >-
cVclKO mice that survived through the vulnerable period of sudden death
developed dilated cardiomyopathy and died before 6 months of age.
explanation: >-
The model's cardiac endpoint is dilation, not hypertrophy, so it does not
reproduce the phenotype this entity is defined by.
- name: Heterozygous vinculin knockout mouse (Vin+/-)
species: Mouse
genotype: Vcl heterozygous null
publication: PMID:15331426
description: >-
Global heterozygous Vcl inactivation, giving roughly 58% less vinculin and 63%
less metavinculin. These animals are grossly normal with normal baseline
cardiac function, but carry abnormal electrocardiograms, abnormal intercalated
discs, misaligned Z-lines, and decompensate when pressure-loaded by transverse
aortic constriction.
evidence:
- reference: PMID:15331426
reference_title: Heterozygous inactivation of the vinculin gene predisposes to stress-induced cardiomyopathy.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
Decreased expression of vinculin/metavinculin leads to abnormal myocyte
structure without baseline physiological evidence of cardiac dysfunction.
These structural changes predispose to stress-induced cardiomyopathy.
explanation: >-
Supports treating this model as informative for the structural consequences of
reduced vinculin and metavinculin dosage, which is why it is linked here.
modeled_mechanisms:
- target: Disrupted Intercalated Disc and Costamere Anchorage
relationship: RECAPITULATES
fidelity: MODERATE
model_scale: CELLULAR
description: >-
Shows that a partial reduction in vinculin and metavinculin, closer in degree
to a heterozygous human genotype than a complete null, is already enough to
disorganize the intercalated disc and the Z-line register.
limitations: >-
Reduced dosage of normal protein, whereas the CMH15 hypothesis is that mutant
metavinculin is actively mis-functional; a 58% reduction does not test that.
The phenotype is also latent until haemodynamic stress is applied.
evidence:
- reference: PMID:15331426
reference_title: Heterozygous inactivation of the vinculin gene predisposes to stress-induced cardiomyopathy.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
normal basal cardiac function and histology but abnormal electrocardiograms,
intercalated disks, and ICD-related protein distribution
explanation: >-
Junctional disorganization at partial vinculin dosage, with function still
normal, which is the node's claim.
- target: Impaired Cardiomyocyte Force Transmission
relationship: PARTIALLY_RECAPITULATES
fidelity: MODERATE
model_scale: ORGANISM
description: >-
Vin+/- hearts tolerate normal load but fail under acute pressure overload,
which is the behaviour expected of a myocardium whose force-transmission
apparatus has reduced reserve rather than reduced resting output.
limitations: >-
The readout is organ-level decompensation after aortic constriction, not a
measurement of force transmission, so the mechanism is inferred from the
stress response. PARTIALLY_RECAPITULATES because baseline function is normal:
the model reproduces the vulnerability, not a resting deficit.
evidence:
- reference: PMID:15331426
reference_title: Heterozygous inactivation of the vinculin gene predisposes to stress-induced cardiomyopathy.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
increased mortality following acute hemodynamic stress imposed by transverse
aortic constriction (TAC); 4) cardiac dysfunction by 6 weeks post-TAC
explanation: >-
Documents the load-dependent failure that this link reads as reduced
force-transmission reserve.
diagnosis:
- name: Clinical diagnosis of hypertrophic cardiomyopathy by echocardiography
diagnosis_term:
preferred_term: Echocardiography
term:
id: NCIT:C16525
label: Echocardiography Test
description: >-
The diagnosis in both reported cases was a clinical one, made on imaging, with
the VCL variant found afterwards by research sequencing of an already
phenotyped cohort. Nothing about CMH15 changes how hypertrophic cardiomyopathy
is recognized: wall thickness, the distribution of hypertrophy, and the
presence and level of outflow obstruction are assessed exactly as in any other
form. Where this entity does bear on imaging is in what to expect - both
probands had severe obstruction at mid-ventricular level, one with apical
involvement, and the wider Z-disc series was preferentially sigmoidal in septal
contour rather than reverse-curvature.
results: >-
Left ventricular hypertrophy with severe outflow obstruction, mid-ventricular
and in one case apical; sigmoidal septal contour reported for the Z-disc class
that includes VCL.
evidence:
- reference: PMID:17097056
reference_title: Echocardiographic-determined septal morphology in Z-disc hypertrophic cardiomyopathy.
supports: SUPPORT
directness: INDIRECT
evidence_source: HUMAN_CLINICAL
snippet: >-
Blinded to the Z-disc genotype status, the septal contour was graded
qualitatively using standard transthoracic echocardiography.
explanation: >-
Establishes the modality and the blinded grading behind the morphology claim.
INDIRECT because the two VCL probands are pooled with eleven others.
- name: Genetic testing, and why VCL should not be reported for hypertrophic cardiomyopathy
diagnosis_term:
preferred_term: Genetic testing
term:
id: NCIT:C15709
label: Genetic Testing
description: >-
This is the practically important entry on the whole record. VCL appears on
many commercial cardiomyopathy panels, so a rare VCL missense variant will be
found in hypertrophic cardiomyopathy probands and can be reported against
OMIM's CMH15 entry. ClinGen's expert panel has classified that relationship as
Disputed, having found that the two originally reported variants exceed the
panel's gnomAD frequency ceiling for pathogenicity and that no new evidence has
emerged since ClinGen's initial curation. A VCL variant is therefore not a molecular
diagnosis of hypertrophic cardiomyopathy, must not be used for predictive
testing or cascade screening in a hypertrophic family, and should not end the
diagnostic search. The same variant found in a dilated presentation is a
different matter, since ClinGen rates VCL-dilated cardiomyopathy Strong.
results: >-
A VCL variant in a hypertrophic cardiomyopathy proband is uninformative and
should be treated as such; the finding does not establish a molecular
diagnosis or support cascade testing.
evidence:
- reference: CGGV:assertion_27365fd2-1203-4e2b-8830-3277e965d8bc-2023-05-10T160000.000Z
reference_title: VCL / hypertrophic cardiomyopathy (Disputed)
supports: SUPPORT
evidence_source: OTHER
snippet: >-
This gene was noted to be a potential rare cause of HCM; however, no new
evidence has emerged since the initial curation.
explanation: >-
The state of the evidence base, which is what makes a VCL finding
uninterpretable in this setting.
- reference: PMID:30681346
reference_title: Evaluating the Clinical Validity of Hypertrophic Cardiomyopathy Genes.
supports: SUPPORT
directness: INDIRECT
evidence_source: HUMAN_CLINICAL
snippet: >-
The majority of genes previously reported as causative of HCM and commonly
included in diagnostic tests have limited or no evidence of disease
association.
explanation: >-
Sets the general problem this entry is an instance of. INDIRECT because the
abstract states the aggregate result without naming VCL; the gene-specific
verdict is carried by the ClinGen record cited alongside it.
- reference: PMID:30681346
reference_title: Evaluating the Clinical Validity of Hypertrophic Cardiomyopathy Genes.
supports: SUPPORT
directness: INDIRECT
evidence_source: HUMAN_CLINICAL
snippet: >-
Of 4191 HCM variants in ClinVar, 31% were in genes with limited or no
evidence of disease association.
explanation: >-
Quantifies how often variants in genes of this evidential class reach a
public variant database, which is the reporting risk this entry warns about.
treatments:
- name: Septal myectomy for obstructive disease
description: >-
Both reported probands underwent surgical septal myectomy, which is how the
tissue examined in the original studies was obtained. Management of CMH15 is
the management of obstructive hypertrophic cardiomyopathy and is not
genotype-directed: no VCL-specific therapy exists, none is in development, and
the disputed status of the gene-disease relationship means the genotype should
not influence treatment decisions at all.
therapeutic_modality: SURGERY
treatment_term:
preferred_term: septal myectomy
term:
id: NCIT:C51591
label: Myectomy
target_phenotypes:
- preferred_term: Left ventricular outflow tract obstruction
term:
id: HP:0032092
label: Left ventricular outflow tract obstruction
target_mechanisms:
- target: Dynamic Outflow Obstruction
description: >-
Relieves the obstruction node directly by resecting the hypertrophied septum.
It does not address anything upstream of it.
evidence:
- reference: PMID:16949038
reference_title: Obstructive hypertrophic cardiomyopathy is associated with reduced expression of vinculin in the intercalated disc.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Microscopic examination of both myectomy specimens from patients bearing
genetic defects in metavinculin and vinculin showed a marked reduction of
vinculin/metavinculin expression in the intercalated disc, but normal
expression in the Z-disc.
explanation: >-
Records that both probands came to surgical myectomy - the tissue examined in
that study is the myectomy specimen - which is the only treatment documented
for either of them.
notes: >-
Sourced from the fact that both probands underwent the procedure, not from a
trial or guideline recommendation for this entity, of which there are none.
Indications, alternatives (alcohol septal ablation), and the medical therapy
that precedes septal reduction are those of obstructive hypertrophic
cardiomyopathy generally and are curated on the parent entry.
discussions:
- discussion_id: cmh15_gene_disease_validity_disputed
prompt: >-
Does VCL cause hypertrophic cardiomyopathy at all, or is CMH15 an entity built
on two 2006 case reports that later evidence has undercut?
kind: KNOWLEDGE_GAP
status: OPEN
attaches_to:
- genetic#VCL
- pathophysiology#VCL Missense Variant in Vinculin or the Metavinculin Insert
- disease#Hypertrophic Cardiomyopathy 15
rationale: >-
This is the entity's central open question and the reason every node upstream
of the hypertrophy is marked HYPOTHETICAL or PROVISIONAL. The supporting case
is two probands, both from one centre in 2006, both ascertained by sequencing
a candidate gene in a myofilament-negative cohort, neither with segregation
data. Three things have since worked against it. The two implicated variants
are commoner in gnomAD than a rare dominant cardiomyopathy allele can be. The
corroborating histology - vinculin depleted at the intercalated disc - was
shown by the same group to occur in obstructive hypertrophic cardiomyopathy
without a VCL variant and in aortic stenosis, so it marks obstruction rather
than genotype. And the one variant carried forward as causal, p.Arg975Trp, had
already been reported in dilated cardiomyopathy, which is the phenotype VCL is
actually well supported for. ClinGen moved the classification from Limited to
Disputed in 2023 and recorded that no new evidence had emerged since its own
initial curation. Note that "initial curation" there is a ClinGen curation
event, not the 2006 publications - the panel records an intervening HCM GCEP
recuration on 04/06/21.
Note what is not in dispute: metavinculin biochemistry. That the insert
variants destabilize the inhibitory sub-domain and produce disordered actin
assemblies is measured, reproducible, and structurally rationalized. The gap is
between that biochemistry and the human hypertrophic phenotype, not within it.
A mechanism can be real and still not be this disease's mechanism.
proposed_experiments:
- experiment_id: cmh15_knockin_mouse
name: Metavinculin insert knock-in mouse carrying a CMH15 allele
description: >-
Generate a knock-in mouse carrying p.Arg975Trp or an equivalent exon-19
insert substitution at the endogenous Vcl locus, and phenotype it for wall
thickness, outflow gradient, chamber dimensions and intercalated-disc
ultrastructure, unstressed and after pressure loading. Every existing mouse
model deletes vinculin, so none of them can test a gain-of-function missense
hypothesis, and the two that exist both produce dilation rather than
hypertrophy. Mouse hearts express proportionally less metavinculin than human
hearts, so a negative result would need that caveat attached.
decision_criterion: >-
Hypertrophy with outflow obstruction in the knock-in would supply the in vivo
support the relationship has never had. A dilated or absent cardiac phenotype
would align the allele with the loss-of-function models and further weaken
the hypertrophic attribution.
would_support:
- pathophysiology#VCL Missense Variant in Vinculin or the Metavinculin Insert
would_refute:
- pathophysiology#VCL Missense Variant in Vinculin or the Metavinculin Insert
- experiment_id: cmh15_case_control_burden
name: Rare-variant burden of VCL exon 19 in large hypertrophic cardiomyopathy cohorts
description: >-
Test whether rare metavinculin-insert variants are enriched in
sarcomere-negative hypertrophic cardiomyopathy probands relative to
ancestry-matched population controls, in the large sequenced cohorts that did
not exist in 2006. This is the direct answer to ClinGen's stated objection,
which is a frequency argument, and burden analysis is the design that
distinguishes a genuinely rare pathogenic allele class from a gene that is
merely long and polymorphic.
decision_criterion: >-
Significant case excess of rare exon-19 variants would move the relationship
off Disputed. No excess would settle it as a non-cause.
would_refute:
- genetic#VCL
evidence:
- reference: CGGV:assertion_27365fd2-1203-4e2b-8830-3277e965d8bc-2023-05-10T160000.000Z
reference_title: VCL / hypertrophic cardiomyopathy (Disputed)
supports: SUPPORT
evidence_source: OTHER
snippet: >-
More evidence is needed to either support or entirely refute the role VCL
plays in this disease.
explanation: >-
The expert panel leaves the question open rather than closed, which is why
this is recorded as a knowledge gap and the entry is retained rather than
argued out of scope.
- reference: CGGV:assertion_27365fd2-1203-4e2b-8830-3277e965d8bc-2023-05-10T160000.000Z
reference_title: VCL / hypertrophic cardiomyopathy (Disputed)
supports: SUPPORT
evidence_source: OTHER
snippet: >-
This gene-disease pair was recurated by the HCM GCEP on 04/06/21 (SOP 8), and
reevaluated by the Hereditary Cardiovascular Disease GCEP on 05/10/2023. As a
result of this reevaluation, the classification changed from limited to
disputed.
explanation: >-
Documents the direction of travel: two successive expert reviews, each
lowering the classification.
- discussion_id: cmh15_model_allele_class_mismatch
prompt: >-
Can vinculin-deficiency models say anything about a disease proposed to act by
gain of function?
kind: HUMAN_MODEL_MISMATCH
status: OPEN
attaches_to:
- pathophysiology#Impaired Cardiomyocyte Force Transmission
- animal_models#Cardiomyocyte-specific vinculin knockout mouse (cVclKO)
- animal_models#Heterozygous vinculin knockout mouse (Vin+/-)
rationale: >-
Every in vivo vinculin model in existence removes protein: a cardiomyocyte
null, a heterozygous null. They agree with each other and with human
loss-of-function VCL variants in producing dilation, arrhythmia and sudden
death rather than hypertrophy. The mechanism proposed for CMH15 is the
opposite in kind - mutant metavinculin that fails to restrain vinculin and
actively drives disordered actin assembly, which ClinGen reads as gain of
function. So the models are informative about what vinculin does and
uninformative about what a CMH15 allele does, and their failure to produce
hypertrophy is weak evidence against the hypothesis rather than strong
evidence against it. There is a second, smaller mismatch stacked on the first:
metavinculin makes up a much larger share of the combined vinculin pool in
human than in mouse heart, so any insert-specific effect is attenuated in
mouse regardless of allele.
evidence:
- reference: PMID:17785437
reference_title: Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy.
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
we developed a mouse model with cardiac-myocyte-specific inactivation of the
vinculin (Vcl) gene by using Cre-loxP technology
explanation: >-
Establishes the allele class of the principal in vivo model as an
inactivation, which is the mismatch this discussion is about.
- reference: CGGV:assertion_27365fd2-1203-4e2b-8830-3277e965d8bc-2023-05-10T160000.000Z
reference_title: VCL / hypertrophic cardiomyopathy (Disputed)
supports: SUPPORT
evidence_source: OTHER
snippet: >-
The mechanism for disease is believed to be gain-of-function, with mutants
both failing to induce F-actin binding and promoting formation of large actin
assemblies with linear bundles (PMID: 30844403).
explanation: >-
States the proposed human mechanism as gain of function, against which the
loss-of-function models are mismatched.
- reference: PMID:17785437
reference_title: Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
The amount of metavinculin expressed in human cardiac tissue appears greater
than that in mouse
explanation: >-
Sources the second, smaller mismatch stacked on the allele-class one: an
insert-specific effect is attenuated in mouse heart because metavinculin is a
smaller share of the combined pool there than in human heart. Graded OTHER
because the sentence is a review statement in the paper's introduction citing
prior work, not a result of the study it appears in.
differential_diagnoses:
- name: VCL-related dilated cardiomyopathy
disease_term:
preferred_term: dilated cardiomyopathy
term:
id: MONDO:0005021
label: dilated cardiomyopathy
description: >-
The same gene, and in the case of p.Arg975Trp the same substitution, with the
opposite remodelling direction and a far stronger evidence base. Loss-of-function
VCL variants are the well-supported class here, presenting in infancy with
severe systolic dysfunction and dilation. This is the first alternative to
consider when a VCL variant is found, because it is the interpretation the
evidence supports.
distinguishing_features:
- Dilated, thin-walled left ventricle with reduced ejection fraction rather than hypertrophy with outflow obstruction
- Typically truncating or frameshift VCL alleles rather than missense
- Frequently infantile onset, with recovery of ventricular function by early childhood in most of a paediatric series - no counterpart in hypertrophic disease
- ClinGen rates the gene-disease relationship Strong rather than Disputed
evidence:
- reference: PMID:37548861
reference_title: Heart Failure with Recovered Ejection Fraction in Patients with Vinculin Loss-of-function Variants.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
This case series identified a unique phenotype of HF with reduced ejection
fraction at presentation that evolved to HF with recovered EF in over 80% of
infant DCM cases with LOF VCL variants.
explanation: >-
Characterizes the VCL phenotype that is actually well supported, and its
distinctive natural history, against which a hypertrophic attribution should
be weighed.
- name: Sarcomeric (myofilament) hypertrophic cardiomyopathy
disease_term:
preferred_term: hypertrophic cardiomyopathy
term:
id: MONDO:0005045
label: hypertrophic cardiomyopathy
description: >-
The overwhelmingly more likely explanation for hypertrophic cardiomyopathy in
any given proband, and the diagnosis that should be pursued before a VCL
variant is entertained. Only eight genes have definitive evidence for
hypertrophic cardiomyopathy, all encoding sarcomeric proteins. Both CMH15
probands were drawn from cohorts already screened negative for these, which is
the only reason a VCL variant was looked for at all.
distinguishing_features:
- A pathogenic variant in MYBPC3, MYH7, TNNT2, TNNI3, TPM1, ACTC1, MYL2 or MYL3
- Reverse-curvature septal morphology rather than the sigmoidal contour reported for the Z-disc class
- Myocyte disarray on histology
evidence:
- reference: PMID:30681346
reference_title: Evaluating the Clinical Validity of Hypertrophic Cardiomyopathy Genes.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Of 33 HCM genes, only 8 (24%) were categorized as definitive ( MYBPC3, MYH7,
TNNT2, TNNI3, TPM1, ACTC1, MYL2, and MYL3); 3 had moderate evidence ( CSRP3,
TNNC1, and JPH2; 33%); and 22 (66%) had limited (n=16) or no evidence (n=6).
explanation: >-
Names the genes that do have definitive evidence, and by omission places VCL
outside them.
- name: Obstructive hypertrophy of other cause, including aortic stenosis
description: >-
Included because of the specific trap this entity sets. Intercalated-disc
depletion of vinculin and metavinculin was the histological finding used to
corroborate the VCL attribution in both probands, and it turns out to be a
feature of outflow obstruction rather than of VCL genotype: the same pattern
appears in obstructive hypertrophic cardiomyopathy generally and in aortic
stenosis, and is absent in dilated, hypertensive and pulmonary-hypertensive
hearts. The finding therefore cannot be used to distinguish CMH15 from any
other obstructive lesion, and should not be treated as a diagnostic marker.
distinguishing_features:
- None histologically - the intercalated-disc vinculin pattern is shared, which is the point of this entry
- Aortic stenosis is distinguished by valve morphology and the level of the gradient on imaging, not by vinculin staining
evidence:
- reference: PMID:16949038
reference_title: Obstructive hypertrophic cardiomyopathy is associated with reduced expression of vinculin in the intercalated disc.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Tissue specimens derived from patients with obstructive HCM and aortic
stenosis (AS) showed a universal defect of vinculin/metavinculin expression
in the intercalated disc but preserved expression in the cardiac Z-disc
explanation: >-
Supports the claim this differential rests on: the staining pattern is shared
between CMH15, obstructive hypertrophic cardiomyopathy without a VCL variant,
and aortic stenosis, so it cannot distinguish them.
references:
- reference: PMID:20301725
title: Nonsyndromic Hypertrophic Cardiomyopathy Overview.
tags:
- GeneReviews
notes: >-
Curated deliberately as a disputed entity rather than as an established disease,
and the shape of the record follows from that. The `genetic` block carries
REFUTE evidence alongside its SUPPORT; the pathophysiology nodes upstream of the
hypertrophy are HYPOTHETICAL or PROVISIONAL rather than ESTABLISHED; and the
histopathology finding is recorded together with the paper that showed it is
non-specific. Nothing here should be read as asserting that VCL causes
hypertrophic cardiomyopathy.
Why the entry exists at all, given the dispute. MONDO carries the term, OMIM
carries the entity (613255), and VCL sits on commercial cardiomyopathy panels,
so the attribution will keep being encountered whether or not it is curated.
Recording it with its counter-evidence attached is more useful than leaving the
concept to be met without any. ClinGen's own verdict is that more evidence is
needed to support or entirely refute the relationship, so the honest state is
open rather than closed. Should a future recuration move VCL to Refuted, the
right response is to record that and keep the entry, not to delete it.
Two evidential distinctions worth preserving through later edits. First, the
metavinculin biochemistry and the human genetic attribution are separate claims
with different support: the actin-bundling and severing work is solid in vitro
and structurally rationalized, and none of the dispute touches it. Second, the
intercalated-disc depletion is cited twice from PMID:16949038, once SUPPORT and
once REFUTE, because that paper establishes the finding and destroys its
specificity in the same study. Do not consolidate those into one item.
On GeneReviews: PMID:20301725 (Nonsyndromic Hypertrophic Cardiomyopathy
Overview) is the applicable chapter and is tagged in `references`, but its
cached PubMed record contains only the chapter's purpose statement with no
clinical-characteristics text, so no phenotype in this entry is sourced from it
and no snippet is claimed against it. There is no VCL-specific GeneReviews
chapter.
No `datasets` block, and this is a decision rather than an omission. No GEO
series names VCL, vinculin or metavinculin; what a dataset search surfaces is
generic hypertrophic cardiomyopathy material, which resolves perfectly and is
about a different population. Attaching that to an entity defined by a disputed
VCL attribution would be the Named Entity Confusion the dataset-curation guidance
warns about. If a VCL-specific series appears later, it is welcome here.
Coverage gaps that are real rather than editorial. No prevalence figure can be
given, and none should be invented. No treatment is genotype-directed, so the
treatments block is deliberately thin and defers to the parent entry. No
penetrance, age of onset, or progression data exist, because there is no
pedigree - both probands were isolated cases from screening cohorts. No CMH15
knock-in animal model exists; the two mouse models curated here both delete
vinculin and are recorded with that mismatch made explicit.
Deep research results are used as seeds for research; they do not undergo the same validation as the main records and may contain errors. How we use deep research.
Create: Hypertrophic Cardiomyopathy 15 (VCL, ClinGen-disputed) · 2026-09-08T10:24:50Z · View source
Created kb/disorders/Hypertrophic_Cardiomyopathy_15.yaml for MONDO:0013200 (OMIM:613255), the VCL/metavinculin locus of familial hypertrophic cardiomyopathy, claimed via issue #11449. Curated deliberately as a DISPUTED gene-disease relationship rather than as an established disease. ClinGen's Hereditary Cardiovascular Disease Gene Curation Expert Panel reclassified VCL-hypertrophic cardiomyopathy from Limited to Disputed on 2023-05-10 (CGGV:assertion_27365fd2-...), while the Dilated Cardiomyopathy GCEP rates VCL-dilated cardiomyopathy Strong. The entry carries REFUTE evidence in the genetic block and on the histopathology finding, HYPOTHETICAL/PROVISIONAL mechanism_confidence throughout the chain, and an OPEN KNOWLEDGE_GAP discussion with two proposed experiments (a metavinculin-insert knock-in mouse, and a rare-variant burden test that directly answers ClinGen's frequency objection). The diagnosis block states explicitly that a VCL variant is not a molecular diagnosis of hypertrophic cardiomyopathy and must not drive cascade testing. Three specific things the curation establishes that a summary would lose. The corroborating histology in both 2006 probands - vinculin depleted at the intercalated disc - was shown by the same group (PMID:16949038) to occur in obstructive HCM without a VCL variant and in aortic stenosis, so it tracks outflow obstruction, not genotype; that paper is therefore cited twice on the same node, once SUPPORT and once REFUTE, and the entry's notes ask that those not be consolidated. The metavinculin biochemistry (PMID:30844403, PMID:22613835) is solid and is NOT part of the dispute; the gap is between that biochemistry and the human phenotype. And every in vivo model deletes vinculin (PMID:17785437, PMID:15331426) while the proposed human mechanism is gain of function, so the models' failure to produce hypertrophy is recorded as a HUMAN_MODEL_MISMATCH discussion and a FAILS_TO_RECAPITULATE link with explicit limitations, not as decisive evidence against. DEEP RESEARCH: falcon (Edison Scientific Literature), 981s, 30 citations, research/Hypertrophic_Cardiomyopathy_15-deep-research-falcon.md plus its citations sidecar and one non-image artifact. The report independently reached the same framing (sparse subtype evidence; do not encode general-HCM prevalence, prognosis or mavacamten response as VCL-specific; the Vcl-null mouse models loss of function and evolves to DCM). It did NOT surface the ClinGen Disputed classification, nor PMID:16236538, PMID:16949038, PMID:30844403, PMID:17097056, PMID:15331426 or PMID:23561539, all of which were found by direct PubMed/ClinGen work and carry most of this entry's content. DEEP RESEARCH CITATION DEFECT, reported rather than silently dropped. The report's executive summary and section 4 attribute five PMIDs to Open Targets as human genetic literature supporting the VCL-HCM association: 16712796, 20052757, 21779496, 22826437, 24937142. Only the first is about VCL. The other four are RAF1/BRAF Noonan-syndrome papers (RAF1 dephosphorylation of Ser259; Raf family kinases review; BRAF heterodimerization in Noonan RAF1 mutants; a Raf/Mek/Erk interactome review) - wrong gene, wrong disease. All four resolve in PubMed, so an identifier-resolution check scores them clean; the retro-fitted `just validate-research-reference` section reports 6/6 resolved and 0 off topic because its extractor does not parse the comma-separated list they appear in. None of the four was used. Flagged here because the failure mode - resolvable identifiers naming an unrelated disease - is invisible to the report's own validation. VALIDATION RUN: `just validate` passes (54/54 snippets verified against cached references); `just validate-terms` passes; `just compliance` 90.5% global / 91.1% weighted. Offline gates run and clean: check-duplicate-keys, check-enum-values, check-qualifier-terms, check-entity-refs, check-causal-targets (no new dangling targets). `just validate-disorders` run as the final batched gate. The falcon report had no validation frontmatter, so both sections were retro-fitted with one `just validate-research-reference` run, which wrote a `## Reference Validation` section (6 references checked, 6 resolved, 0 unresolved, 0 off topic) and a `## Term Validation` section (48 terms checked, 48 resolved, 0 unresolved). A subsequent `just validate-research-terms` re-run failed on an OLS read timeout resolving HP:0031640 and changed nothing; the section from the first run is what is committed. The single term flagged as "named as a different term" is MONDO:0013200, which the report renders as "MONDO:0013200 (if available)" straight from the template - a parsing artifact, not a mis-binding. Note that the reference section's clean result is the reason the RAF1 defect above is recorded by hand. DELIBERATE OMISSIONS. No `datasets` block: `just discover-datasets` returns only generic hypertrophic cardiomyopathy series (myosin-inhibitor mouse studies, sarcomeric iPSC lines, HCM lncRNA networks) and none mentions VCL, vinculin or metavinculin, so attaching them would be Named Entity Confusion reached through dataset search. No prevalence figure, penetrance, onset or progression data: the published case base is two isolated probands from screening cohorts, with no pedigree. Treatments are deliberately thin and defer to the parent entry, since nothing here is genotype-directed. GeneReviews PMID:20301725 (Nonsyndromic Hypertrophic Cardiomyopathy Overview) is the applicable chapter and is tagged in `references`, but its cached PubMed record contains only the chapter's purpose statement with no clinical-characteristics text, so no phenotype is sourced from it and no snippet is claimed against it; there is no VCL-specific chapter. PRE-PR RED-TEAM REVIEW (dismech-pr-review skill, fresh-context subagent) found 21 findings, all of which were taken. The two that mattered: (1) relationship_type was CAUSATIVE with a ten-line note retracting it. The enum has a DISPUTED value defined as ClinGen "Disputed" or "Refuted", and CAUSATIVE is defined as ClinGen Definitive or Strong. The structured field is what an export or query reads; the prose caveat does not survive either. Changed to DISPUTED. This was the one field in the entry that contradicted its own framing. (2) The description said both probands had apical hypertrophy. Only the R975W proband did; the L277M proband's report says mid-ventricular only. With a two-patient case base that is not cosmetic. Corrected. Also taken: the pathophysiology chain terminated at obstruction and never reached the phenotype layer, and a pathophysiology node differed from a phenotype only in capitalization, which the verbatim-matching pathograph would have rendered as two nodes for one concept - the node is now "Dynamic Outflow Obstruction" and edges run into three phenotypes (orphan_targets is now empty, 17 edges). A `Dilated cardiomyopathy` phenotype whose own description opened "Not a feature of this entity" was deleted, since a phenotypes[] entry asserts the opposite of what it said; the boundary is carried by the differential diagnosis and the allelism evidence. The ClinGen DCM-Strong record was regraded SUPPORT -> NO_EVIDENCE, being true, worth citing, and about a different disease. Two evidence items had quotes that did not carry their explanations: the histopathology REFUTE quoted the DCM/HTN/PHTN comparator arm, which if anything makes the marker look more specific, and the differential quoted a sentence saying the marker discriminates between pathophysiologies; both now quote the obstructive-HCM/aortic-stenosis sentence that actually destroys VCL-specificity, and the comparator sentence is retained as a SUPPORT item for compartment and aetiology specificity. An unevidenced `modifier: LOSS_OF_FUNCTION` on GO:0003789 was dropped - the cited work shows mutants fail to inhibit bundling, not that they lose severing. "No new evidence since 2006" / "the intervening seventeen years" over-read ClinGen, whose phrase is "since the initial curation", a curation event with an intervening 2021 recuration; both were corrected. The mouse-versus-human metavinculin share, asserted three times without a citation, is now evidenced from PMID:17785437's full text. The sigmoidal-contour phenotype now records that the class-level finding is in tension with both VCL probands' described morphology and that the series' two apical cases may be the VCL pair. `attaches_to: animal_models#Mouse` bound only the first of two same-species models and now names both by model name. A prevalence record that was really a diagnostic yield was removed and its content folded into the remaining record's notes, where the 389-proband denominator was also corrected (three variants across four patients, one carried forward, not "one variant"). The treatment term moved from NCIT:C15329 Surgical Procedure to NCIT:C51591 Myectomy, already an enum-validated member. A `would_refute` pointing at the hypertrophy node now points at the variant node, since the probands demonstrably had hypertrophy. Prose describing one `discover-datasets` run was trimmed to the durable claim. Compliance moved 90.5% -> 87.4% across this revision. That is the placeholder prevalence record and the Dilated cardiomyopathy phenotype being removed; both scored full marks on evidence coverage and neither should have existed. UNRELATED PRE-EXISTING CHURN, surfaced not fixed. Eight references_cache/DOI_*.md files show as modified in a freshly created worktree off origin/main - a tool in the validation path lowercases the DOI in `reference_id` and `doi` (e.g. DOI:10.7554/eLife.74270 -> DOI:10.7554/elife.74270). This predates and is unrelated to this curation and has been left unstaged.
Hypertrophic cardiomyopathy 15 (HCM15) is a historically catalogued, extremely rare Mendelian hypertrophic-cardiomyopathy subtype attributed to heterozygous germline variants in VCL, which encodes vinculin and its muscle-specific splice isoform metavinculin. The supplied disease identifier is MONDO:0013200. Because disease numbering and gene–disease assertions can change between ontology releases, this identifier and the HCM15–VCL relationship should be checked against the current MONDO, OMIM, ClinGen, and ClinVar releases before production use. Open Targets supports a VCL–HCM association and points to human literature including PMIDs 16712796, 20052757, 21779496, 22826437, and 24937142, but this is gene-level evidence rather than proof that every rare VCL variant causes HCM15. (OpenTargets Search: hypertrophic cardiomyopathy-VCL)
The central limitation is that published HCM15-specific human data are too sparse to estimate penetrance, age-specific onset, phenotype frequencies, incidence, prognosis, or treatment response. Consequently, this report distinguishes:
| Domain | HCM15/VCL-specific evidence | General HCM evidence used for clinical context | Confidence / knowledge-base handling |
|---|---|---|---|
| Identity/genetics | HCM15 is catalogued as a rare Mendelian HCM subtype associated with heterozygous germline VCL variants; Open Targets links VCL to HCM using human genetic literature including PMIDs 16712796, 20052757, 21779496, 22826437, and 24937142. The submitted identifier is MONDO:0013200, but identifier/version consistency should be checked against the live MONDO and OMIM releases. (OpenTargets Search: hypertrophic cardiomyopathy-VCL) | Monogenic HCM is usually autosomal dominant, with variable penetrance and expressivity; identifiable pathogenic variants occur in roughly 30–60% of unselected HCM, predominantly in established sarcomeric genes. (verheyen2024austrianconsensusstatement pages 11-12, verheyen2024austrianconsensusstatement pages 9-11) | Low–moderate subtype confidence. Record VCL as the reported causal gene and inheritance as autosomal dominant, but retain provenance and current ClinGen/ClinVar classification. Do not infer penetrance, pathogenicity, or phenotype from gene-level association alone; distinguish P/LP variants from VUS explicitly. |
| Phenotype | Published VCL-associated human observations support a cardiomyopathy spectrum, but available evidence is too sparse to estimate HCM15-specific frequencies, typical onset, severity, obstruction rate, or extracardiac manifestations. (OpenTargets Search: hypertrophic cardiomyopathy-VCL) | HCM ranges from asymptomatic hypertrophy to dyspnea, chest pain, syncope, atrial or ventricular arrhythmia, heart failure, and sudden cardiac death. LV hypertrophy may be asymmetric, reverse-curvature, sigmoid, concentric, or apical; LVOTO/SAM can occur at rest or with provocation. (verheyen2024austrianconsensusstatement pages 11-12, verheyen2024austrianconsensusstatement pages 6-7) | Low subtype confidence; high general-HCM confidence. Encode observed features patient by patient when primary VCL case data are available. General HCM manifestations may define the diagnostic phenotype but must not be stored as VCL-specific frequencies, onset distributions, or obligate features. |
| Mechanism | Vinculin localizes to cardiomyocyte costameres and intercalated discs, linking actin to cell–matrix and cell–cell adhesion systems. Direct human variant-specific mechanisms remain incompletely established; disruption of force transmission, junctional stability, and mechanosensing is biologically plausible. (zemljicharpf2007cardiacmyocytespecificexcisionof pages 1-2, zemljicharpf2007cardiacmyocytespecificexcisionof pages 2-3) | Focal-adhesion mechanotransduction involves integrins, vinculin, FAK/Src, PI3K–AKT, and Wnt/β-catenin signaling; mechanical-load responses can promote hypertrophic growth. These pathways provide context, not proof of the causal route in HCM15. | Moderate protein-function, low variant-mechanism confidence. Annotate adhesion/mechanotransduction as supported VCL biology; label the route from a particular VCL allele to human hypertrophy as inferred unless demonstrated by segregation and variant-specific functional assays. |
| Epidemiology | No reliable HCM15-specific prevalence, incidence, carrier-frequency, founder-effect, sex-ratio, or geographic-distribution estimate was identified. | Phenotype-defined unexplained LV thickening affects approximately 0.16–0.23% of adults; including genotype-positive/phenotype-negative individuals may raise estimated HCM prevalence to about 0.6%. (verheyen2024austrianconsensusstatement pages 1-2) | HCM15 epidemiology unavailable. Store general HCM prevalence only at the parent-disease level. Never attribute the 0.16–0.23% or 0.6% estimates to VCL-associated HCM15. |
| Diagnosis | Molecular confirmation requires a VCL variant classified as pathogenic/likely pathogenic with appropriate phenotype, inheritance, segregation, and exclusion of alternative causes; a VCL VUS does not establish HCM15. | HCM is generally diagnosed by otherwise unexplained maximal LV wall thickness ≥15 mm, or ≥13 mm in a relative of an affected person or a carrier of a confirmed disease-causing variant. Evaluation uses pedigree, ECG, echocardiography, ambulatory ECG, CMR, exercise testing, and exclusion of hypertension, valvular disease, athlete’s heart, amyloidosis, and metabolic/storage phenocopies. (verheyen2024austrianconsensusstatement pages 11-12, verheyen2024austrianconsensusstatement pages 6-7, verheyen2024austrianconsensusstatement pages 1-2) | High general diagnostic confidence; moderate subtype confidence. Encode HCM phenotype and molecular diagnosis as separate assertions. Reassess VCL variants periodically; panel, exome, or genome findings require ACMG/AMP interpretation and phenotype correlation. |
| Treatment | No VCL-specific drug, gene therapy, RNA therapy, editing strategy, or genotype-guided treatment has demonstrated clinical efficacy. | Phenotype-directed HCM care includes β-blockers or non-dihydropyridine calcium-channel blockers, disopyramide in selected obstructive disease, myosin inhibition, septal reduction for refractory obstruction, AF anticoagulation, ICD-based SCD prevention, and advanced-heart-failure therapy. In EXPLORER-HCM, mavacamten achieved the primary endpoint in 37% versus 17% with placebo; in VALOR-HCM, 17.9% versus 76.8% met criteria for or underwent septal reduction at 16 weeks. (pagel2025advancesincardiovascular pages 5-6, seferovic2023stateoftheartdocumenton pages 11-12) | High general-HCM, no subtype-specific efficacy evidence. Treatments should be attached to the patient’s obstruction, arrhythmia, SCD-risk, or heart-failure phenotype—not to VCL genotype. Do not encode mavacamten response or procedural outcomes as HCM15-specific. |
| Prognosis | HCM15-specific survival, SCD rate, heart-failure progression, transplant risk, and quality-of-life trajectories are unknown; limited VCL reports cannot define penetrance or outcome distributions. | General HCM prognosis is heterogeneous. Risk assessment considers wall thickness, LVOT gradient, family history, unexplained syncope, nonsustained VT, LVEF, apical aneurysm, and fibrosis; LGE ≥15% of LV mass is an additional risk marker. A 2024 cohort found genotype-positive status alone did not independently predict mortality, heart-failure progression, or SCD. (verheyen2024austrianconsensusstatement pages 9-11, seferovic2023stateoftheartdocumenton pages 13-13) | Insufficient subtype evidence. Use validated clinical risk markers and longitudinal patient data. General HCM event rates, genotype-outcome estimates, and survival figures must not be encoded as VCL/HCM15-specific prognosis. |
| Models | Cardiomyocyte-specific Vcl knockout mice directly demonstrate loss-of-function consequences: abnormal intercalated discs, myofibril detachment, reduced cadherin/β1D-integrin, connexin-43 redistribution, conduction slowing, ventricular tachycardia, and sudden death; 49% died before about 3 months, while survivors developed DCM and died before 6 months. (zemljicharpf2007cardiacmyocytespecificexcisionof pages 8-11, zemljicharpf2007cardiacmyocytespecificexcisionof pages 11-12, zemljicharpf2007cardiacmyocytespecificexcisionof pages 1-2) | The model supports vinculin’s necessity for cardiac mechanical and electrical integrity but models near-complete cardiomyocyte loss and predominantly arrhythmic/DCM outcomes, not a specific heterozygous human HCM15 allele. | High confidence for Vcl-loss biology; limited disease fidelity. Record as a mechanistic VCL model, not a complete HCM15 phenocopy. Do not transfer mouse lethality, timing, sex effects, or DCM frequency to affected humans. |
Table: This table separates VCL/HCM15-specific findings from parent-level HCM evidence used only for clinical context. It highlights which claims can be encoded directly and which must not be represented as VCL-specific frequencies, treatment responses, or outcomes.
HCM15 is a proposed autosomal-dominant, VCL-associated form of familial hypertrophic cardiomyopathy. At the parent-disease level, HCM is defined by increased left-ventricular wall thickness that is not explained solely by loading conditions or another cardiac, systemic, metabolic, infiltrative, or storage disorder. Contemporary adult criteria are maximal end-diastolic LV wall thickness ≥15 mm, or ≥13 mm in a first-degree relative of an affected person or in a carrier of a confirmed disease-causing variant. (verheyen2024austrianconsensusstatement pages 6-7, verheyen2024austrianconsensusstatement pages 1-2)
This is an aggregated disease-level synthesis, not an individual EHR record. The foundational subtype evidence derives from small human genetic observations; modern diagnostic and therapeutic statements derive predominantly from aggregated HCM cohorts, trials, and guidelines.
The initiating lesion is a heterozygous germline VCL variant with sufficient pathogenic evidence. Vinculin is an actin-binding adhesion protein concentrated at cardiomyocyte costameres and intercalated discs; metavinculin is a muscle-enriched alternatively spliced isoform. VCL links the actin cytoskeleton and contractile apparatus to cell–matrix and cell–cell adhesion systems. Complete cardiomyocyte loss in mice demonstrates that this function is essential for junctional and electrical integrity. (zemljicharpf2007cardiacmyocytespecificexcisionof pages 1-2, zemljicharpf2007cardiacmyocytespecificexcisionof pages 2-3)
A rare VCL variant should not automatically be considered causal. A defensible molecular diagnosis requires ACMG/AMP classification, phenotype concordance, segregation, population rarity, and ideally variant-specific functional evidence. A VUS does not establish HCM15.
Genetic:
Environmental and physiologic modifiers:
Hypertension, obesity, valvular disease, ischemia, pregnancy-related hemodynamic loading, and intense exercise may alter hypertrophy, symptoms, or arrhythmic burden in HCM generally, but none is established as a cause of VCL-HCM15. Hypertension and athlete’s heart are especially important diagnostic confounders. In mild-to-moderate hypertension, LV thickness ≥15 mm is uncommon, reported in under 5% in the cited consensus. (verheyen2024austrianconsensusstatement pages 11-12)
No replicated VCL-specific protective allele, diet, medication, or exposure is known to prevent disease penetrance. Control of hypertension and other cardiovascular comorbidities, avoidance of dehydration in obstructive physiology, and individualized exercise are prudent tertiary-risk measures rather than primary prevention of the mutation.
Vinculin is load responsive: mechanical stress alters adhesion-complex recruitment. Therefore, a VCL defect plausibly interacts with hemodynamic load through impaired mechanotransduction, but a quantitative human VCL × environment interaction has not been demonstrated. (zemljicharpf2007cardiacmyocytespecificexcisionof pages 2-3)
Published evidence does not support HCM15-specific percentages. The following are expected HCM phenotypes, to be recorded as observed rather than assumed in a VCL carrier.
| Phenotype | Type/course and impact | Suggested HPO term |
|---|---|---|
| Unexplained LV hypertrophy, often asymmetric septal but potentially concentric or apical | Clinical/imaging sign; may be absent early and develop with age; severity variable | HP:0001712 Left ventricular hypertrophy; HP:0001670 Asymmetric septal hypertrophy |
| LV outflow-tract obstruction and systolic anterior motion | Dynamic sign, resting or provoked; obstruction/SAM can occur in up to 75% of general HCM but is not HCM15-specific | HP:0001685 Dynamic LV outflow obstruction; HP:0004382 Mitral-valve systolic anterior motion |
| Diastolic dysfunction and left-atrial enlargement | Progressive or load dependent; contributes to exertional dyspnea and AF | HP:0005117 Elevated LV filling pressure; HP:0031640 Left-atrial enlargement |
| Exertional dyspnea, exercise intolerance, fatigue | Symptoms ranging from mild to disabling; reduce work, sport, and daily activity | HP:0002094 Dyspnea; HP:0003546 Exercise intolerance; HP:0012378 Fatigue |
| Chest pain/ischemia | Episodic; may reflect microvascular ischemia rather than epicardial coronary disease | HP:0100749 Chest pain; HP:0001677 Coronary microvascular dysfunction where supported |
| Palpitations, AF, nonsustained or sustained VT | Episodic; AF can worsen filling and thromboembolic risk; ventricular arrhythmia can cause SCD | HP:0001962 Palpitations; HP:0005110 Atrial fibrillation; HP:0004756 Ventricular tachycardia |
| Presyncope/syncope | Episodic; exertional or unexplained syncope is prognostically important | HP:0001279 Syncope |
| Myocardial fibrosis/disarray | Histologic/CMR abnormality; LGE is present in roughly 50–60% of general HCM | HP:0031294 Myocardial fibrosis |
| Heart failure, rarely end-stage systolic dysfunction | Chronic progressive phenotype; may remain preserved-EF or evolve to LVEF <50% | HP:0001635 Congestive heart failure; HP:0001723 Restrictive cardiomyopathy phenotype when documented |
| Sudden cardiac death/cardiac arrest | Rare but severe outcome, particularly relevant in younger patients | HP:0001645 Sudden cardiac death; HP:0001695 Cardiac arrest |
HCM quality-of-life impairment is driven by dyspnea, fatigue, exercise limitation, anxiety about SCD, medication effects, and activity restrictions. The 2024 Austrian consensus states that HCM can cause a “substantial reduction in quality of life,” but no HCM15-specific EQ-5D, SF-36, KCCQ, or HCMSQ data exist. (verheyen2024austrianconsensusstatement pages 1-2)
The accessible evidence did not provide a sufficiently verified, current list of HCM15 variants with transcript, HGVS expression, ClinVar assertion, gnomAD frequency, segregation, and functional status. A knowledge-base implementation should therefore import variants directly from current ClinVar/ClinGen and retain:
Reported VCL cardiomyopathy alleles have included missense and splice/isoform-affecting variants, but the disease spectrum includes both hypertrophic and dilated cardiomyopathy. Thus, variant-specific evidence is essential. Open Targets’ supporting literature includes PMIDs 16712796, 20052757, 21779496, 22826437, and 24937142. (OpenTargets Search: hypertrophic cardiomyopathy-VCL)
Possible mechanisms include loss of function, altered actin binding, disturbed head–tail autoinhibition, defective recruitment to costameres/intercalated discs, or altered mechanosensing. Complete Vcl deletion is clearly loss of function, but it must not be assumed that every human heterozygous missense allele acts identically.
No toxin, pollutant, radiation exposure, occupation, or infectious agent is known to cause HCM15. Viral myocarditis and other acquired myocardial diseases can mimic or aggravate cardiomyopathy but are not defining etiologies. Smoking, excess alcohol, obesity, hypertension, sleep apnea, and sedentary behavior should be managed for overall cardiovascular health; none has demonstrated VCL-specific penetrance modification.
Lifestyle advice should be phenotype based. Low-to-moderate recreational exercise is generally safe and beneficial. High-intensity sport should be assessed through shared decision-making, particularly when there is prior cardiac arrest, unexplained syncope, exercise-induced arrhythmia, significant LVOTO, or elevated SCD risk. (verheyen2024austrianconsensusstatement pages 19-21)
Vinculin occupies costameres, which align with Z-discs and transmit sarcomeric force to extracellular matrix, and intercalated discs, which provide end-to-end mechanical and electrical coupling. Relevant signaling context includes integrin–FAK/Src, PI3K–AKT, Wnt/β-catenin, cytoskeletal tension, and hypertrophic gene programs. These pathways are biologically relevant to focal-adhesion mechanotransduction but have not been demonstrated as a complete allele-to-phenotype chain in HCM15.
In conditional cardiomyocyte Vcl-knockout mice, structural abnormalities preceded overt dysfunction: serrated, less electron-dense intercalated discs, separation of myofibrils, disorganized mitochondria, reduced cadherin/β1D-integrin, and lateralized connexin-43 were observed. Telemetry showed heart block and polymorphic VT; 86% of isolated knockout hearts had spontaneous ventricular ectopy. (zemljicharpf2007cardiacmyocytespecificexcisionof pages 8-11, zemljicharpf2007cardiacmyocytespecificexcisionof pages 11-12)
Suggested GO biological processes:
Suggested GO cellular components: focal adhesion (GO:0005925), cell–substrate junction (GO:0030055), adherens junction (GO:0005912), intercalated disc (GO:0014704), costamere (GO:0043034), actin cytoskeleton (GO:0015629), Z disc (GO:0030018), mitochondrion (GO:0005739).
Suggested Cell Ontology terms: cardiomyocyte (CL:0000746), ventricular cardiomyocyte (CL:0002129), cardiac fibroblast, vascular endothelial cell (CL:0000115), vascular smooth-muscle cell (CL:0000359), cardiac conduction cell where appropriate.
No HCM15-specific bulk transcriptomic, single-cell, spatial, proteomic, metabolomic, lipidomic, methylomic, or CRISPR-screen signature was identified. A 2023 spatial multiomic atlas mapped cellular niches across eight normal human heart regions, and a 2024 review emphasized that single-cell/spatial technologies now resolve cardiac cellular diversity, but these resources do not establish a VCL-HCM15 molecular signature. Therefore, such evidence should be treated as enabling context, not disease-specific annotation.
Primary organ: heart, principally the left-ventricular myocardium and interventricular septum.
Structures:
Tissue/cell level: striated cardiac muscle, ventricular cardiomyocytes, interstitial fibroblasts, intramural coronary microvasculature, conduction-system cells.
Subcellular level: intercalated discs, fascia adherens, costameres, focal adhesions, actin cytoskeleton, sarcomere/Z-disc interfaces, gap junctions, and secondarily mitochondria. The Vcl-knockout study directly showed abnormal intercalated discs, myofibril detachment, connexin-43 redistribution, and mitochondrial disorganization. (zemljicharpf2007cardiacmyocytespecificexcisionof pages 8-11, zemljicharpf2007cardiacmyocytespecificexcisionof pages 11-12)
HCM is usually diffuse or regionally asymmetric rather than unilateral; lateralization is not applicable.
HCM15-specific onset is unknown. General inherited HCM may be detectable in childhood, adolescence, adulthood, or late life; onset is often insidious and penetrance is age dependent. A genotype-positive person may remain phenotype negative for years.
A practical temporal model is:
The course is chronic and lifelong but highly variable, not classically relapsing–remitting. There is no established spontaneous molecular remission. Obstruction and symptoms can improve with treatment.
Genotype-positive/phenotype-negative children and adolescents should generally undergo ECG and imaging every 1–2 years, and adults every 3–5 years. Stable phenotype-positive patients generally receive clinical review, ECG/Holter, and echocardiography every 1–2 years, with earlier reassessment after symptom change. (verheyen2024austrianconsensusstatement pages 21-22, verheyen2024austrianconsensusstatement pages 19-21)
No HCM15-specific prevalence or incidence estimate exists. Parent-level phenotype-defined unexplained LV thickening affects approximately 0.16–0.23% of adults; inclusion of genotype-positive/phenotype-negative people may raise general HCM prevalence toward 0.6%. These values must not be assigned to HCM15. (verheyen2024austrianconsensusstatement pages 1-2)
No reliable HCM15-specific sex ratio, age distribution, ancestry enrichment, or geographic clustering is known. General cohorts can show referral-related male predominance, which should not be interpreted as Mendelian sex limitation.
CMR detects focal fibrosis; LGE is reported in approximately 50–60% of general HCM, and involvement of ≥15% of LV mass is an additional SCD-risk marker. CMR can be repeated every 3–5 years when useful for risk reassessment. (verheyen2024austrianconsensusstatement pages 9-11, verheyen2024austrianconsensusstatement pages 21-22)
No diagnostic enzyme assay or VCL-specific circulating biomarker exists. Useful phenotype/severity biomarkers include NT-proBNP/BNP and high-sensitivity troponin, but neither establishes HCM15. Baseline renal, liver, thyroid, iron, CK, and metabolic testing is selected according to differential diagnosis and treatment.
Cascade testing should target the known familial P/LP variant. Genotype-negative relatives can usually be released from serial familial surveillance when the familial variant is definitively causal; VUS-based predictive testing should not be used for reassurance or irreversible decisions.
Hypertensive remodeling, aortic stenosis, athlete’s heart, transthyretin or AL amyloidosis, Fabry disease, Danon disease, Pompe disease, PRKAG2 glycogenosis, mitochondrial disease, Noonan/RASopathy, Friedreich ataxia, and cardiac tumors or subaortic membrane should be considered. Morphology, extracardiac features, ECG voltage, strain, CMR, biomarkers, and molecular testing distinguish these entities. (verheyen2024austrianconsensusstatement pages 11-12, verheyen2024austrianconsensusstatement pages 6-7)
There are no valid HCM15-specific 5- or 10-year survival estimates, annual SCD rate, transplant rate, or life-expectancy figures. Prognosis must be individualized from phenotype rather than VCL status alone.
General adverse outcomes include AF and stroke, ventricular arrhythmia/SCD, progressive heart failure, apical aneurysm/thrombus, end-stage systolic dysfunction, and need for septal reduction or transplantation. Apical aneurysm occurs in approximately 2% of general HCM and was associated in cited data with annual SCD and thromboembolism rates of 4.7% and 1.1%, respectively. (verheyen2024austrianconsensusstatement pages 9-11)
SCD assessment includes age, maximal wall thickness, LVOT gradient, left-atrial diameter, family history, unexplained syncope, and nonsustained VT. Additional markers include LVEF <50%, apical aneurysm, extensive LGE, and selected pathogenic sarcomeric variants. The ESC framework considers an ICD at a 5-year risk ≥6% and may consider it at 4–<6%; the AHA/ACC approach emphasizes major risk markers such as prior arrest/sustained VT, early familial SCD, wall thickness ≥30 mm, recent unexplained syncope, apical aneurysm, and LVEF <50%. (seferovic2023stateoftheartdocumenton pages 13-13)
A 2024 German cohort of 283 adults observed 14 SCD-equivalent events over median 5.77 years; adding genetic status improved model AUC to 0.76, but this was not VCL specific. Conversely, a separate 2024 international cohort of 1,468 patients found genotype-positive status was not independently predictive of mortality, heart-failure progression, or SCD. Genotype alone should therefore not dictate prognosis.
No VCL-specific approved therapy or validated pharmacogenomic algorithm exists. Management is driven by obstruction, symptoms, arrhythmia, heart-failure state, and SCD risk.
In EXPLORER-HCM, 37% receiving mavacamten versus 17% receiving placebo met the primary functional endpoint; 65% versus 31% improved at least one NYHA class, and postexercise LVOT gradient fell by 36 mmHg. Transient LVEF <50% occurred in 6% and resolved after withdrawal. (seferovic2023stateoftheartdocumenton pages 11-12)
In VALOR-HCM, 17.9% of mavacamten-treated versus 76.8% of placebo-treated patients met criteria for or underwent septal reduction at 16 weeks. These are general obstructive-HCM data, not evidence of VCL-specific response. (pagel2025advancesincardiovascular pages 5-6)
Mavacamten requires serial echocardiographic LVEF/gradient surveillance and careful review of CYP2C19/CYP3A4 interactions because excessive myosin inhibition can cause systolic dysfunction.
A 2023 randomized trial enrolled 15 completers. Five months of moderate- or progressive high-intensity training improved peak VO₂ by 1.3 mL/kg/min overall (P=0.009), without serious arrhythmia or adverse cardiac events, although it was underpowered for safety. A 2024 systematic review of five studies and 235 participants reported functional-capacity improvements up to 46% and no sustained tachyarrhythmia, ICD discharge, or SCD during the studied programs. These data support supervised, individualized rehabilitation rather than universal inactivity.
Gene replacement, allele-specific silencing, base/prime editing, and RNA therapies are preclinical concepts for inherited HCM; none has demonstrated benefit for VCL-HCM15. Current HCM implementation studies include the multinational real-world COLLIGO-HCM, NCT06372457 (331 participants) and phase-3 mavacamten studies such as NCT05414175. Aficamten trials are active across obstructive and nonobstructive phenotypes. Trial eligibility is phenotype based, not VCL specific.
The germline variant cannot currently be prevented pharmacologically. Reproductive options after identification of a familial P/LP variant include genetic counselling, prenatal diagnosis, and preimplantation genetic testing for monogenic disease. These require discussion of uncertain penetrance and variable severity.
Vaccination has no disease-specific preventive role, although routine immunization reduces general infectious risk. Population newborn screening is not recommended because HCM15 is exceptionally rare and no validated biochemical marker exists.
Naturally occurring HCM is recognized in cats and occurs in other animals, but no well-established naturally occurring veterinary disease was identified that is specifically caused by an orthologous VCL allele and faithfully corresponds to human HCM15. Accordingly, cat HCM should not be annotated automatically as VCL-HCM15. No zoonotic or transmissible potential exists.
Vinculin’s adhesion and mechanotransduction functions are evolutionarily conserved, supporting comparative study. Species differences in heart rate, loading, isoform expression, and remodeling limit direct translation.
The strongest direct model is the ventricular-cardiomyocyte-specific Vcl knockout created by Cre-mediated exon-3 excision. Vinculin/metavinculin were lost from cardiomyocytes while remaining in nonmyocytes and vessels. Before overt physiological dysfunction, animals developed abnormal intercalated discs, detachment of myofibrils, mitochondrial disorganization, reduced cadherin and β1D-integrin, and connexin-43 redistribution. Electrical mapping showed irregular wavefronts and local conduction slowing; telemetry documented heart block and polymorphic VT. (zemljicharpf2007cardiacmyocytespecificexcisionof pages 8-11, zemljicharpf2007cardiacmyocytespecificexcisionof pages 11-12, zemljicharpf2007cardiacmyocytespecificexcisionof pages 3-4)
The abstract-level result is especially informative: “49% died suddenly before 3 months, despite preserved contractile function”; surviving animals subsequently developed DCM and died before six months. At 14 weeks, male survival was 51% and female survival 71%; no males survived beyond 32 weeks. (zemljicharpf2007cardiacmyocytespecificexcisionof pages 1-2, zemljicharpf2007cardiacmyocytespecificexcisionof pages 7-8)
Recapitulated features: cardiomyocyte junctional disease, conduction defects, ventricular arrhythmia, sudden death, early mild hypertrophy, fibrosis, and progressive cardiomyopathy.
Limitations: near-complete cardiomyocyte knockout is more severe than a heterozygous human missense allele; the dominant late phenotype is DCM, not isolated HCM; mouse timing and lethality cannot be transferred to humans.
Citation: Zemljic-Harpf et al., Molecular and Cellular Biology, November 2007; DOI: 10.1128/MCB.00728-07. (zemljicharpf2007cardiacmyocytespecificexcisionof pages 8-11, zemljicharpf2007cardiacmyocytespecificexcisionof pages 1-2)
Human iPSC-derived cardiomyocytes carrying rigorously classified VCL variants, engineered heart tissues, and isogenic CRISPR-corrected controls would be the most informative future systems for variant-specific contractility, adhesion, conduction, and mechanoload studies. No sufficiently validated HCM15-specific iPSC, organoid, zebrafish, Drosophila, or large-animal model was identified in the retrieved evidence.
genotype, HCM phenotype, and molecular diagnosis fields.Overall, HCM15 is best treated as a rare, incompletely validated VCL-associated HCM entity embedded within the broader clinical HCM framework. The most secure biology concerns vinculin’s role in cardiomyocyte adhesion, force transmission, intercalated-disc integrity, and conduction; the least secure domains are variant-level causality, penetrance, epidemiology, and genotype-specific therapeutic response.
References
(OpenTargets Search: hypertrophic cardiomyopathy-VCL): Open Targets Query (hypertrophic cardiomyopathy-VCL, 7 results). Buniello, A. et al. (2025). Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery. Nucleic Acids Research.
(verheyen2024austrianconsensusstatement pages 11-12): Nicolas Verheyen, Johannes Auer, Nikolaos Bonaros, Tamara Buchacher, Daniel Dalos, Michael Grimm, Agnes Mayr, Anna Rab, Sebastian Reinstadler, Daniel Scherr, Gabor G Toth, Thomas Weber, David K. Zach, Marc-Michael Zaruba, Daniel Zimpfer, Peter P Rainer, and Gerhard Pölzl. Austrian consensus statement on the diagnosis and management of hypertrophic cardiomyopathy. Wiener Klinische Wochenschrift, 136:571-597, Oct 2024. URL: https://doi.org/10.1007/s00508-024-02442-1, doi:10.1007/s00508-024-02442-1. This article has 6 citations and is from a peer-reviewed journal.
(verheyen2024austrianconsensusstatement pages 9-11): Nicolas Verheyen, Johannes Auer, Nikolaos Bonaros, Tamara Buchacher, Daniel Dalos, Michael Grimm, Agnes Mayr, Anna Rab, Sebastian Reinstadler, Daniel Scherr, Gabor G Toth, Thomas Weber, David K. Zach, Marc-Michael Zaruba, Daniel Zimpfer, Peter P Rainer, and Gerhard Pölzl. Austrian consensus statement on the diagnosis and management of hypertrophic cardiomyopathy. Wiener Klinische Wochenschrift, 136:571-597, Oct 2024. URL: https://doi.org/10.1007/s00508-024-02442-1, doi:10.1007/s00508-024-02442-1. This article has 6 citations and is from a peer-reviewed journal.
(verheyen2024austrianconsensusstatement pages 6-7): Nicolas Verheyen, Johannes Auer, Nikolaos Bonaros, Tamara Buchacher, Daniel Dalos, Michael Grimm, Agnes Mayr, Anna Rab, Sebastian Reinstadler, Daniel Scherr, Gabor G Toth, Thomas Weber, David K. Zach, Marc-Michael Zaruba, Daniel Zimpfer, Peter P Rainer, and Gerhard Pölzl. Austrian consensus statement on the diagnosis and management of hypertrophic cardiomyopathy. Wiener Klinische Wochenschrift, 136:571-597, Oct 2024. URL: https://doi.org/10.1007/s00508-024-02442-1, doi:10.1007/s00508-024-02442-1. This article has 6 citations and is from a peer-reviewed journal.
(zemljicharpf2007cardiacmyocytespecificexcisionof pages 1-2): Alice E. Zemljic-Harpf, Joel C. Miller, Scott A. Henderson, Adam T. Wright, Ana Maria Manso, Laila Elsherif, Nancy D. Dalton, Andrea K. Thor, Guy A. Perkins, Andrew D. McCulloch, and Robert S. Ross. Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy. Molecular and Cellular Biology, 27:7522-7537, Nov 2007. URL: https://doi.org/10.1128/mcb.00728-07, doi:10.1128/mcb.00728-07. This article has 245 citations and is from a domain leading peer-reviewed journal.
(zemljicharpf2007cardiacmyocytespecificexcisionof pages 2-3): Alice E. Zemljic-Harpf, Joel C. Miller, Scott A. Henderson, Adam T. Wright, Ana Maria Manso, Laila Elsherif, Nancy D. Dalton, Andrea K. Thor, Guy A. Perkins, Andrew D. McCulloch, and Robert S. Ross. Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy. Molecular and Cellular Biology, 27:7522-7537, Nov 2007. URL: https://doi.org/10.1128/mcb.00728-07, doi:10.1128/mcb.00728-07. This article has 245 citations and is from a domain leading peer-reviewed journal.
(verheyen2024austrianconsensusstatement pages 1-2): Nicolas Verheyen, Johannes Auer, Nikolaos Bonaros, Tamara Buchacher, Daniel Dalos, Michael Grimm, Agnes Mayr, Anna Rab, Sebastian Reinstadler, Daniel Scherr, Gabor G Toth, Thomas Weber, David K. Zach, Marc-Michael Zaruba, Daniel Zimpfer, Peter P Rainer, and Gerhard Pölzl. Austrian consensus statement on the diagnosis and management of hypertrophic cardiomyopathy. Wiener Klinische Wochenschrift, 136:571-597, Oct 2024. URL: https://doi.org/10.1007/s00508-024-02442-1, doi:10.1007/s00508-024-02442-1. This article has 6 citations and is from a peer-reviewed journal.
(pagel2025advancesincardiovascular pages 5-6): Paul S. Pagel, Dustin Hang, Julie K. Freed, and George J. Crystal. Advances in cardiovascular pharmacotherapy. i. cardiac myosin inhibitors. Journal of cardiothoracic and vascular anesthesia, Feb 2025. URL: https://doi.org/10.1053/j.jvca.2025.02.009, doi:10.1053/j.jvca.2025.02.009. This article has 3 citations and is from a peer-reviewed journal.
(seferovic2023stateoftheartdocumenton pages 11-12): Petar M. Seferović, Marija Polovina, Giuseppe Rosano, Biykem Bozkurt, Marco Metra, Stephane Heymans, Wilfried Mullens, Johann Bauersachs, Karen Sliwa, Rudolf A. de Boer, Dimitrios Farmakis, Thomas Thum, Iacopo Olivotto, Claudio Rapezzi, Aleš Linhart, Domenico Corrado, Carsten Tschöpe, Ivan Milinković, Antoni Bayes Genis, Gerasimos Filippatos, Andre Keren, Milika Ašanin, Gordana Krljanac, Ružica Maksimović, Hadi Skouri, Tuvia Ben Gal, Brenda Moura, Maurizio Volterrani, Magdy Abdelhamid, Yuri Lopatin, Ovidiu Chioncel, and Andrew J.S. Coats. State-of-the-art document on optimal contemporary management of cardiomyopathies. Sep 2023. URL: https://doi.org/10.1002/ejhf.2979, doi:10.1002/ejhf.2979. This article has 18 citations and is from a highest quality peer-reviewed journal.
(seferovic2023stateoftheartdocumenton pages 13-13): Petar M. Seferović, Marija Polovina, Giuseppe Rosano, Biykem Bozkurt, Marco Metra, Stephane Heymans, Wilfried Mullens, Johann Bauersachs, Karen Sliwa, Rudolf A. de Boer, Dimitrios Farmakis, Thomas Thum, Iacopo Olivotto, Claudio Rapezzi, Aleš Linhart, Domenico Corrado, Carsten Tschöpe, Ivan Milinković, Antoni Bayes Genis, Gerasimos Filippatos, Andre Keren, Milika Ašanin, Gordana Krljanac, Ružica Maksimović, Hadi Skouri, Tuvia Ben Gal, Brenda Moura, Maurizio Volterrani, Magdy Abdelhamid, Yuri Lopatin, Ovidiu Chioncel, and Andrew J.S. Coats. State-of-the-art document on optimal contemporary management of cardiomyopathies. Sep 2023. URL: https://doi.org/10.1002/ejhf.2979, doi:10.1002/ejhf.2979. This article has 18 citations and is from a highest quality peer-reviewed journal.
(zemljicharpf2007cardiacmyocytespecificexcisionof pages 8-11): Alice E. Zemljic-Harpf, Joel C. Miller, Scott A. Henderson, Adam T. Wright, Ana Maria Manso, Laila Elsherif, Nancy D. Dalton, Andrea K. Thor, Guy A. Perkins, Andrew D. McCulloch, and Robert S. Ross. Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy. Molecular and Cellular Biology, 27:7522-7537, Nov 2007. URL: https://doi.org/10.1128/mcb.00728-07, doi:10.1128/mcb.00728-07. This article has 245 citations and is from a domain leading peer-reviewed journal.
(zemljicharpf2007cardiacmyocytespecificexcisionof pages 11-12): Alice E. Zemljic-Harpf, Joel C. Miller, Scott A. Henderson, Adam T. Wright, Ana Maria Manso, Laila Elsherif, Nancy D. Dalton, Andrea K. Thor, Guy A. Perkins, Andrew D. McCulloch, and Robert S. Ross. Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy. Molecular and Cellular Biology, 27:7522-7537, Nov 2007. URL: https://doi.org/10.1128/mcb.00728-07, doi:10.1128/mcb.00728-07. This article has 245 citations and is from a domain leading peer-reviewed journal.
(verheyen2024austrianconsensusstatement pages 19-21): Nicolas Verheyen, Johannes Auer, Nikolaos Bonaros, Tamara Buchacher, Daniel Dalos, Michael Grimm, Agnes Mayr, Anna Rab, Sebastian Reinstadler, Daniel Scherr, Gabor G Toth, Thomas Weber, David K. Zach, Marc-Michael Zaruba, Daniel Zimpfer, Peter P Rainer, and Gerhard Pölzl. Austrian consensus statement on the diagnosis and management of hypertrophic cardiomyopathy. Wiener Klinische Wochenschrift, 136:571-597, Oct 2024. URL: https://doi.org/10.1007/s00508-024-02442-1, doi:10.1007/s00508-024-02442-1. This article has 6 citations and is from a peer-reviewed journal.
(zemljicharpf2007cardiacmyocytespecificexcisionof pages 12-14): Alice E. Zemljic-Harpf, Joel C. Miller, Scott A. Henderson, Adam T. Wright, Ana Maria Manso, Laila Elsherif, Nancy D. Dalton, Andrea K. Thor, Guy A. Perkins, Andrew D. McCulloch, and Robert S. Ross. Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy. Molecular and Cellular Biology, 27:7522-7537, Nov 2007. URL: https://doi.org/10.1128/mcb.00728-07, doi:10.1128/mcb.00728-07. This article has 245 citations and is from a domain leading peer-reviewed journal.
(verheyen2024austrianconsensusstatement pages 21-22): Nicolas Verheyen, Johannes Auer, Nikolaos Bonaros, Tamara Buchacher, Daniel Dalos, Michael Grimm, Agnes Mayr, Anna Rab, Sebastian Reinstadler, Daniel Scherr, Gabor G Toth, Thomas Weber, David K. Zach, Marc-Michael Zaruba, Daniel Zimpfer, Peter P Rainer, and Gerhard Pölzl. Austrian consensus statement on the diagnosis and management of hypertrophic cardiomyopathy. Wiener Klinische Wochenschrift, 136:571-597, Oct 2024. URL: https://doi.org/10.1007/s00508-024-02442-1, doi:10.1007/s00508-024-02442-1. This article has 6 citations and is from a peer-reviewed journal.
(zemljicharpf2007cardiacmyocytespecificexcisionof pages 3-4): Alice E. Zemljic-Harpf, Joel C. Miller, Scott A. Henderson, Adam T. Wright, Ana Maria Manso, Laila Elsherif, Nancy D. Dalton, Andrea K. Thor, Guy A. Perkins, Andrew D. McCulloch, and Robert S. Ross. Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy. Molecular and Cellular Biology, 27:7522-7537, Nov 2007. URL: https://doi.org/10.1128/mcb.00728-07, doi:10.1128/mcb.00728-07. This article has 245 citations and is from a domain leading peer-reviewed journal.
(zemljicharpf2007cardiacmyocytespecificexcisionof pages 7-8): Alice E. Zemljic-Harpf, Joel C. Miller, Scott A. Henderson, Adam T. Wright, Ana Maria Manso, Laila Elsherif, Nancy D. Dalton, Andrea K. Thor, Guy A. Perkins, Andrew D. McCulloch, and Robert S. Ross. Cardiac-myocyte-specific excision of the vinculin gene disrupts cellular junctions, causing sudden death or dilated cardiomyopathy. Molecular and Cellular Biology, 27:7522-7537, Nov 2007. URL: https://doi.org/10.1128/mcb.00728-07, doi:10.1128/mcb.00728-07. This article has 245 citations and is from a domain leading peer-reviewed journal.
Checked with linkml-reference-validator 0.2.1.
| Outcome | Count |
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| References checked | 6 |
| Resolved | 6 |
| Unresolved (possible confabulation) | 0 |
| Unverifiable | 0 |
| References weighed for topical relevance | 6 |
| On topic | 3 |
| Off topic | 0 |
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Checked with linkml-term-validator 0.4.5, through the ols: adapter.
| Outcome | Count |
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| Terms checked | 48 |
| Resolved | 48 |
| Unresolved (possible confabulation) | 0 |
| Obsolete | 0 |
| Unverifiable | 0 |
| Terms whose name was checked | 1 |
| Terms named correctly | 0 |
| Terms named as a different term | 1 |
These identifiers resolve, so nothing about them looks wrong, and the ontology calls them something unrelated to what the report calls them. That usually means the identifier is not the one the sentence needs:
MONDO:0013200 (4 mentions) - the report calls it "if available"; MONDO calls it hypertrophic cardiomyopathy 15