Chemotherapy-Induced Neutropenia

Complex Pathograph 18 Show in embeddings browser Hematologic Disease Iatrogenic condition

Chemotherapy-induced neutropenia is a treatment-related hematologic toxicity of cytotoxic antineoplastic therapy. Myelosuppressive chemotherapy damages proliferating hematopoietic progenitors in the bone marrow, suppressing granulopoiesis and producing a fall in the circulating neutrophil count. It is the single-lineage-predominant expression of the conserved myelosuppression mechanism, and its principal danger is febrile neutropenia and infection, which drives dose delays and reductions that can compromise antitumor treatment.

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1
Mappings
6
Pathophys.
2
Phenotypes
18
Pathograph
4
Genes
4
Variants
2
Medical Actions
1
Deep Research
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Mappings

MONDO
MONDO:0001475 neutropenia Not Yet Curated
skos:broadMatch dismech curation MONDO: MISSING
MONDO has no class for chemotherapy-induced or drug-induced neutropenia, so this entry carries no `disease_term` binding and is cross-referenced to the neutropenia parent instead. MONDO:0001475 is broader than this entry in two directions at once: it is aetiology-agnostic, and it is the parent of the whole inherited severe-congenital-neutropenia series. broadMatch is used deliberately rather than closeMatch or narrowMatch - per CLAUDE.md only exactMatch and narrowMatch retire a mapped concept from the curation queue, and curating a drug toxicity does not curate the general neutropenia concept. Rebind `disease_term` if MONDO ever creates a drug-induced neutropenia class.
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Pathophysiology

6
Host pharmacogenetic variation in cytotoxic drug inactivation
How much active cytotoxic drug the marrow actually sees for a given administered dose is set in part by the patient's own drug-inactivating enzymes. Reduced-function germline alleles in the enzyme that clears a given agent raise systemic exposure to the active species and so deepen the progenitor injury downstream: UGT1A1 glucuronidates SN-38, the active metabolite of irinotecan; dihydropyrimidine dehydrogenase, encoded by DPYD, is the rate-limiting step in fluorouracil catabolism; and TPMT and NUDT15 between them catabolise thiopurines. This is the step that pre-treatment pharmacogenomic testing acts on: it changes the starting dose rather than the drug, and unlike every node downstream of it, it is determined by the patient's germline rather than by the treatment.
UGT1A1 hgnc:12530 HUGO Gene Nomenclature Committee (hgnc) Relation: this pathophysiological event involves this gene This pathophysiological event involves UGT1A1 (hgnc:12530). hgnc:12530 is a gene from the HUGO Gene Nomenclature Committee. DPYD hgnc:3012 HUGO Gene Nomenclature Committee (hgnc) Relation: this pathophysiological event involves this gene This pathophysiological event involves DPYD (hgnc:3012). hgnc:3012 is a gene from the HUGO Gene Nomenclature Committee. TPMT hgnc:12014 HUGO Gene Nomenclature Committee (hgnc) Relation: this pathophysiological event involves this gene This pathophysiological event involves TPMT (hgnc:12014). hgnc:12014 is a gene from the HUGO Gene Nomenclature Committee. NUDT15 hgnc:23063 HUGO Gene Nomenclature Committee (hgnc) Relation: this pathophysiological event involves this gene This pathophysiological event involves NUDT15 (hgnc:23063). hgnc:23063 is a gene from the HUGO Gene Nomenclature Committee.
xenobiotic metabolic process GO:0006805 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased xenobiotic metabolic process (GO:0006805). GO:0006805 is a biological process from the Gene Ontology.
Show evidence (3 references)
PMID:11990381 SUPPORT Human Clinical
"screening for UGT1A1*28 polymorphism may identify patients with lower SN-38 glucuronidation rates and greater susceptibility to irinotecan induced gastrointestinal and bone marrow toxicity."
Links a reduced-function allele to lower inactivation of the active metabolite and to greater marrow toxicity, which is the claim this node makes.
PMID:12209976 SUPPORT Human Clinical
"Dihydropyrimidine dehydrogenase (DPD) is the initial and rate-limiting enzyme in the catabolism of 5-fluorouracil (5-FU), and it is suggested that patients with a partial deficiency of this enzyme are at risk of developing severe 5-FU-associated toxicity."
States the rate-limiting inactivation step for fluorouracil and ties partial enzyme deficiency to severe toxicity.
PMID:41618934 SUPPORT Other
"Thiopurine methyltransferase (TPMT) and Nudix hydrolase 15 (NUDT15) are key enzymes that catabolize thiopurines. Decreased or no-function alleles in TPMT and NUDT15 are associated with reduced or no enzyme activity and predictive of pronounced adverse effects, including severe myelosuppression,..."
Names TPMT and NUDT15 as the thiopurine-catabolising enzymes and links reduced-function alleles to severe myelosuppression. Evidence source is OTHER because this is a consensus dosing guideline.
Cytotoxic chemotherapy exposure and hematopoietic progenitor injury
Myelosuppressive chemotherapy delivers cytotoxic drugs to the bone marrow, where rapidly proliferating hematopoietic stem and progenitor cells are preferentially injured — the conserved initiating lesion of the myelosuppression module, here viewed through its granulocytic consequence.
hematopoietic stem cell CL:0000037 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hematopoietic stem cell (CL:0000037). CL:0000037 is a cell type from the Cell Ontology. hematopoietic progenitor cell CL:0008001 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hematopoietic progenitor cell, annotated with hematopoietic precursor cell (CL:0008001). CL:0008001 is a cell type from the Cell Ontology.
apoptotic process GO:0006915 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology.
Show evidence (3 references)
PMID:34307165 SUPPORT Other
"Proliferating hematopoietic stem and progenitor cells (HSPCs) in the bone marrow are particularly susceptible to chemotherapy-induced damage."
Establishes chemotherapy injury to proliferating marrow progenitors as the initiating lesion, matching the module trigger node this disease conforms to. Evidence source is OTHER because this is a review article.
PMID:31504118 SUPPORT Human Clinical
"Chemotherapy-induced damage of hematopoietic stem and progenitor cells (HSPC) causes multi-lineage myelosuppression."
A human clinical trial frames chemotherapy-induced HSPC damage as the cause of myelosuppression, of which neutropenia is the predominant lineage here.
PMID:31988457 SUPPORT In Vitro
"a vascularized human BM-on-a-chip (BM chip) supports the differentiation and maturation of multiple blood cell lineages over 4 weeks while improving CD34+ cell maintenance, and that it recapitulates aspects of BM injury, including myeloerythroid toxicity after clinically relevant exposures to..."
New Approach Methodology (NAM) evidence (Wyss Institute human bone-marrow organ-on-chip, the "bone marrow" example highlighted in Don Ingber's NAMeRS 2026 case study on real-world human-chip implementation). A vascularized human BM chip recapitulates clinically relevant chemotherapeutic- and radiation-induced myelosuppression of proliferating hematopoietic progenitors — and subsequent recovery — providing a human-specific microphysiological model of the initiating marrow lesion of chemotherapy-induced neutropenia without animal testing.
Cell-cycle-dependent vulnerability of proliferating progenitors
Marrow toxicity is not simply a matter of drug reaching the bone marrow: it depends on the haematopoietic stem and progenitor pool being in active cell cycle when the cytotoxic agent arrives. That cell-cycle dependence is what makes the marrow a preferential target, and it is also a pharmacologically addressable step - holding progenitors in G1 for the duration of drug exposure protects them without changing the drug or its dose.
hematopoietic stem cell CL:0000037 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hematopoietic stem cell (CL:0000037). CL:0000037 is a cell type from the Cell Ontology. hematopoietic progenitor cell CL:0008001 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hematopoietic progenitor cell, annotated with hematopoietic precursor cell (CL:0008001). CL:0008001 is a cell type from the Cell Ontology.
cell cycle GO:0007049 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves cell cycle (GO:0007049). GO:0007049 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:33861388 SUPPORT Other
"trilaciclib induces a transient, reversible G1 cell cycle arrest of proliferating haematopoietic stem and progenitor cells in bone marrow, thus protecting them from damage during chemotherapy"
Pharmacological demonstration that the vulnerability is cell-cycle dependent: removing progenitors from cycle protects them from an otherwise unchanged chemotherapy exposure, which is the evidence that this is a distinct mechanistic step rather than a restatement of the trigger.
Bone marrow granulopoietic suppression
Loss of functional progenitors suppresses bone marrow hematopoietic output. In this entry the suppression is viewed through its effect on granulopoiesis, reducing the marrow's capacity to replace circulating neutrophils.
hematopoietic stem cell CL:0000037 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hematopoietic stem cell (CL:0000037). CL:0000037 is a cell type from the Cell Ontology.
hemopoiesis GO:0030097 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased hemopoiesis (GO:0030097). GO:0030097 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:40057216 SUPPORT Model Organism
"The resultant bone marrow suppression is a major dose-limiting side effect."
Identifies marrow suppression as the dose-limiting consequence of chemotherapy hematopoietic toxicity, matching the module central-effector node. Evidence source is MODEL_ORGANISM (mouse 5-fluorouracil study).
Peripheral neutropenia
Reduced marrow output lowers the circulating neutrophil count. This node specializes the module's multilineage-cytopenia effector to the neutrophil lineage, the predominant and most clinically consequential cytopenia for many regimens.
neutrophil CL:0000775 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neutrophil (CL:0000775). CL:0000775 is a cell type from the Cell Ontology.
myeloid cell homeostasis GO:0002262 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased myeloid cell homeostasis (GO:0002262). GO:0002262 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:34307165 SUPPORT Other
"one of the most common side effects of chemotherapy is myelosuppression, which typically manifests as neutropenia, anemia, thrombocytopenia, and/or lymphopenia"
Lists neutropenia among the manifestations of chemotherapy-induced myelosuppression, the lineage specialized in this node. Evidence source is OTHER because this is a review article.
Febrile neutropenia and infection susceptibility
Neutropenia impairs host defense, raising the risk of infection and febrile neutropenia — the principal driver of morbidity and mortality and the reason chemotherapy doses are delayed or reduced.
neutrophil CL:0000775 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neutrophil (CL:0000775). CL:0000775 is a cell type from the Cell Ontology.
leukocyte mediated immunity GO:0002443 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased leukocyte mediated immunity (GO:0002443). GO:0002443 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:21095116 SUPPORT Other
"Chemotherapy-induced neutropenia is a major risk factor for infection-related morbidity and mortality and also a significant dose-limiting toxicity in cancer treatment."
Establishes neutropenia as the driver of infection-related morbidity and as a dose-limiting toxicity, the consequence captured by the module node. Evidence source is OTHER because this is a guideline document.
PMID:38587388 SUPPORT Other
"Neutropenia increases infection risk, and anemia frequently results in debilitating fatigue."
Maps neutropenia to its characteristic infection complication. Evidence source is OTHER because this is a review article.
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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence and cross-linked metadata.
Pathograph: causal mechanism network for Chemotherapy-Induced Neutropenia Interactive directed graph showing how pathophysiology mechanisms, phenotypes, genetic factors and variants, experimental models, environmental triggers, and treatments relate through causal and linked edges.
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Phenotypes

2
Blood 1
Neutropenia Decreased total neutrophil count HP:0001875 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Neutropenia, annotated with Decreased total neutrophil count (HP:0001875). HP:0001875 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:34307165 SUPPORT Other
"one of the most common side effects of chemotherapy is myelosuppression, which typically manifests as neutropenia, anemia, thrombocytopenia, and/or lymphopenia"
Names neutropenia among the defining manifestations of chemotherapy-induced myelosuppression. Evidence source is OTHER because this is a review.
Immune 1
Recurrent infections HP:0002719 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Increased susceptibility to infection, annotated with Recurrent infections (HP:0002719). HP:0002719 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:21095116 SUPPORT Other
"Chemotherapy-induced neutropenia is a major risk factor for infection-related morbidity and mortality and also a significant dose-limiting toxicity in cancer treatment."
Establishes infection-related morbidity and mortality as the principal complication of chemotherapy-induced neutropenia. Evidence source is OTHER because this is a guideline document.
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Genetic Associations

4
UGT1A1 pharmacogenomic susceptibility (Reduced-function UGT1A1 variants increase irinotecan-associated neutropenia risk)
Gene: UGT1A1 hgnc:12530 gene page HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is UGT1A1 (hgnc:12530). hgnc:12530 is a gene from the HUGO Gene Nomenclature Committee. relationship_type: RISK_FACTOR variant_origin: GERMLINE
Show evidence (2 references)
PMID:11990381 SUPPORT Human Clinical
"screening for UGT1A1*28 polymorphism may identify patients with lower SN-38 glucuronidation rates and greater susceptibility to irinotecan induced gastrointestinal and bone marrow toxicity."
Human pharmacokinetic evidence links UGT1A1*28 to greater irinotecan bone marrow toxicity, of which neutropenia is the principal manifestation.
PMID:28585035 SUPPORT Human Clinical
"Patients with recessive models (GA + AA vs. GG) of UGT1A1*6 showed an increased risk (OR 2.03, 95% CI 1.54-2.68; RD = 0.11, P < 0.001)."
Quantifies the UGT1A1*6 association with severe irinotecan-induced neutropenia across twelve studies, the neutrophil-specific endpoint this entry is about.
Variants (2)
UGT1A1*28
Promoter repeat allele - an additional TA repeat in the TATA sequence - associated with lower SN-38 glucuronidation and increased irinotecan myelotoxicity susceptibility.
UGT1A1*6
Allele associated with an increased risk of severe irinotecan-induced neutropenia in a meta-analysis of twelve studies.
DPYD pharmacogenomic susceptibility (Reduced-function DPYD variants increase fluoropyrimidine-associated neutropenia risk)
Gene: DPYD hgnc:3012 gene page HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is DPYD (hgnc:3012). hgnc:3012 is a gene from the HUGO Gene Nomenclature Committee. relationship_type: RISK_FACTOR variant_origin: GERMLINE
Show evidence (3 references)
PMID:12209976 SUPPORT Human Clinical
"Patients with partial DPD deficiency appeared to have a 3.4-fold higher risk of developing grade IV neutropenia than patients with normal DPD activity."
Quantifies the neutrophil-specific excess risk associated with reduced DPD activity, the enzyme DPYD encodes.
PMID:12209976 SUPPORT Human Clinical
"Analysis of the DPYD gene of patients suffering from grade IV neutropenia for the presence of the IVS14+1G>A mutation showed that 50% of the patients investigated were heterozygous or homozygous for the IVS14+1G>A mutation."
Ties the enzyme deficiency to a specific DPYD allele in the patients who developed grade IV neutropenia.
PMID:30348537 SUPPORT Human Clinical
"Prospective DPYD genotyping was feasible in routine clinical practice, and DPYD genotype-based dose reductions improved patient safety of fluoropyrimidine treatment."
Prospective multicentre evidence that acting on the genotype changes the toxicity outcome. The endpoint is overall severe fluoropyrimidine toxicity rather than neutropenia alone, so it supports the actionability of the locus rather than the neutrophil-specific effect size.
Variants (1)
DPYD IVS14+1G>A (DPYD*2A, c.1905+1G>A)
Splice-site allele carried, in heterozygous or homozygous form, by 50% of the grade IV neutropenia patients genotyped in the founding series.
TPMT pharmacogenomic susceptibility (Reduced-function TPMT alleles increase thiopurine-associated myelosuppression risk)
Gene: TPMT hgnc:12014 gene page HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is TPMT (hgnc:12014). hgnc:12014 is a gene from the HUGO Gene Nomenclature Committee. relationship_type: RISK_FACTOR variant_origin: GERMLINE
Show evidence (1 reference)
PMID:41618934 SUPPORT Other
"Thiopurine methyltransferase (TPMT) and Nudix hydrolase 15 (NUDT15) are key enzymes that catabolize thiopurines. Decreased or no-function alleles in TPMT and NUDT15 are associated with reduced or no enzyme activity and predictive of pronounced adverse effects, including severe myelosuppression,..."
The consensus dosing guideline states the TPMT mechanism and the myelosuppression consequence. Evidence source is OTHER because this is a guideline rather than a primary study.
NUDT15 pharmacogenomic susceptibility (Reduced-function NUDT15 alleles increase thiopurine-associated neutropenia risk)
Gene: NUDT15 hgnc:23063 HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is NUDT15 (hgnc:23063). hgnc:23063 is a gene from the HUGO Gene Nomenclature Committee. relationship_type: RISK_FACTOR variant_origin: GERMLINE
Show evidence (4 references)
PMID:37794799 SUPPORT Human Clinical
"We found 9-fold higher risk of 6-MP induced leukopenia (odds ratio [OR] =9.00, 95% confidence interval [CI]: 3.73-21.74) and 2.5-fold higher risk of 6-MP-induced neutropenia (OR=2.52, 95% CI: 1.72-3.69) for NUDT15 c.415C>T variant carriers in the dominant model."
Quantifies the neutropenia-specific risk in patients receiving mercaptopurine as leukaemia chemotherapy, which is the exposure and the endpoint this entry is about.
PMID:25108385 SUPPORT Human Clinical
"Despite a lower frequency of TPMT mutations in Asians, the incidence of thiopurine-induced leukopenia is higher in Asians than in individuals of European descent."
Supports the population asymmetry stated in the notes, which is why NUDT15 rather than TPMT carries most of the signal in East Asian cohorts.
PMID:25108385 SUPPORT Human Clinical
"We identified a nonsynonymous SNP in NUDT15 (encoding p.Arg139Cys) that was strongly associated with thiopurine-induced early leukopenia (odds ratio (OR) = 35.6; P(combined) = 4.88 × 10(-94))."
The founding association report for the allele, with a leukopenia rather than a neutropenia endpoint.
+ 1 more reference
Variants (1)
NUDT15 c.415C>T (p.Arg139Cys)
The allele carrying most of the reported thiopurine myelosuppression signal in acute lymphoblastic leukaemia cohorts.
💊

Medical Actions

2
Trilaciclib
Action: PharmacotherapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Pharmacotherapy (NCIT:C15986). NCIT:C15986 is a clinical intervention from the NCI Thesaurus. NCIT:C15986
Platform: Small molecule
A short-acting intravenous CDK4/6 inhibitor given before chemotherapy rather than as treatment for established neutropenia. It holds haematopoietic stem and progenitor cells in a transient, reversible G1 arrest for the duration of cytotoxic exposure, so the marrow is protected without altering the chemotherapy regimen. Approved in the USA in February 2021 for extensive-stage small cell lung cancer receiving platinum/etoposide or topotecan. This is prophylactic myeloprotection, mechanistically distinct from G-CSF, which accelerates recovery after the injury has occurred.
Mechanism Target:
INHIBITS Cell-cycle-dependent vulnerability of proliferating progenitors — CDK4/6 inhibition arrests progenitors in G1, removing them from the cycling state on which cytotoxic injury depends.
Show evidence (4 references)
PMID:33861388 SUPPORT Other
"In February 2021, trilaciclib received its first approval in the USA to decrease the incidence of chemotherapy-induced myelosuppression in adult patients when administered prior to a platinum/etoposide-containing regimen or topotecan-containing regimen for extensive-stage small cell lung cancer..."
Establishes the approved indication and the pre-chemotherapy timing that distinguishes myeloprotection from post-hoc rescue.
PMID:31504118 SUPPORT Human Clinical
"Trilaciclib clinically and significantly reduced both the duration of severe neutropenia (DSN) in cycle 1, a surrogate for febrile neutropenia (FN) and infections, and the occurrence of severe neutropenia (SN)"
The pivotal randomized evidence for the neutrophil endpoint this entry is about, reporting reductions in both the duration and the occurrence of severe neutropenia. This is the primary trial underlying the approval that PMID:33861388 reports.
PMID:31504118 SUPPORT Human Clinical
"For those patients in the trilaciclib group who did experience SN, the duration of those events was shorter compared with placebo (median duration of 3 versus 8 days)."
Quantifies the residual benefit in patients who still developed severe neutropenia, showing the effect is a shift in severity rather than a binary prevention.
+ 1 more reference
Granulocyte colony-stimulating factor (G-CSF)
Action: PharmacotherapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Pharmacotherapy (NCIT:C15986). NCIT:C15986 is a clinical intervention from the NCI Thesaurus. NCIT:C15986
Agent: filgrastim NCIT:C1474 NCI Thesaurus (NCIT) Relation: this treatment uses this therapeutic agent This treatment uses filgrastim (NCIT:C1474). NCIT:C1474 is a therapeutic agent from the NCI Thesaurus.
Prophylactic or therapeutic G-CSF (filgrastim, lenograstim, pegfilgrastim) reduces the incidence and duration of chemotherapy-induced neutropenia and febrile neutropenia.
Mechanism Target:
RESTORES Bone marrow granulopoietic suppression — G-CSF drives granulocytic differentiation and release from the surviving progenitor pool, shortening the depth and duration of the neutrophil nadir after the marrow injury has already occurred.
Show evidence (1 reference)
PMID:21095116 SUPPORT Other
"prophylactic treatment with granulocyte-colony stimulating factors (G-CSFs), such as filgrastim (including approved biosimilars), lenograstim or pegfilgrastim is available to reduce the risk of chemotherapy-induced neutropenia"
The EORTC guideline identifies prophylactic G-CSF as the standard intervention to reduce chemotherapy-induced neutropenia. Evidence source is OTHER because this is a guideline document.
{ }

Source YAML

click to show
name: Chemotherapy-Induced Neutropenia
creation_date: "2026-06-24T00:00:00Z"
category: Complex
categories:
- Treatment-Related Disorder
- Hematologic Toxicity
- Adverse Drug Reaction
synonyms:
- CIN
- chemotherapy-induced neutropenia
description: >-
  Chemotherapy-induced neutropenia is a treatment-related hematologic toxicity of
  cytotoxic antineoplastic therapy. Myelosuppressive chemotherapy damages
  proliferating hematopoietic progenitors in the bone marrow, suppressing
  granulopoiesis and producing a fall in the circulating neutrophil count. It is
  the single-lineage-predominant expression of the conserved myelosuppression
  mechanism, and its principal danger is febrile neutropenia and infection, which
  drives dose delays and reductions that can compromise antitumor treatment.
parents:
- Hematologic Disease
- Iatrogenic condition
disease_term:
  preferred_term: chemotherapy-induced neutropenia
mappings:
  mondo_mappings:
  - term:
      id: MONDO:0001475
      label: neutropenia
    mapping_predicate: skos:broadMatch
    mapping_source: dismech curation
    mapping_justification: >-
      MONDO has no class for chemotherapy-induced or drug-induced neutropenia,
      so this entry carries no `disease_term` binding and is cross-referenced to
      the neutropenia parent instead. MONDO:0001475 is broader than this entry
      in two directions at once: it is aetiology-agnostic, and it is the parent
      of the whole inherited severe-congenital-neutropenia series. broadMatch is
      used deliberately rather than closeMatch or narrowMatch - per CLAUDE.md
      only exactMatch and narrowMatch retire a mapped concept from the curation
      queue, and curating a drug toxicity does not curate the general
      neutropenia concept. Rebind `disease_term` if MONDO ever creates a
      drug-induced neutropenia class.
    consistency:
    - reference: MONDO
      consistent: MISSING
      notes: >-
        Searched in the OAK MONDO build. `search "neutropenia"` returns
        MONDO:0001475 alone; the synonym-inclusive `search "t~neutropenia"`
        returns congenital, familial, cyclic and syndromic neutropenias only.
        `t~chemotherapy-induced neutropenia`, `t~drug-induced neutropenia`,
        `t~drug induced neutropenia`, `t~myelosuppression` and
        `t~febrile neutropenia` each return nothing.
        `t~chemotherapy-induced` returns five terms - alopecia, hypertension,
        oral mucositis, neuropathy and the generic MONDO:0800390
        chemotherapy-induced toxicity, which MONDO files under poisoning - and
        no neutropenia term. `t~agranulocytosis` returns MONDO:0021758 acquired
        agranulocytosis, whose MONDO definition is "Agranulocytosis that is
        autoimmune in origin", so it does not cover this entry either.
pathophysiology:
- name: Host pharmacogenetic variation in cytotoxic drug inactivation
  biological_scale: MOLECULAR
  role: modifier
  description: >-
    How much active cytotoxic drug the marrow actually sees for a given
    administered dose is set in part by the patient's own drug-inactivating
    enzymes. Reduced-function germline alleles in the enzyme that clears a given
    agent raise systemic exposure to the active species and so deepen the
    progenitor injury downstream: UGT1A1 glucuronidates SN-38, the active
    metabolite of irinotecan; dihydropyrimidine dehydrogenase, encoded by DPYD,
    is the rate-limiting step in fluorouracil catabolism; and TPMT and NUDT15
    between them catabolise thiopurines. This is the step that pre-treatment
    pharmacogenomic testing acts on: it changes the starting dose rather than
    the drug, and unlike every node downstream of it, it is determined by the
    patient's germline rather than by the treatment.
  biological_processes:
  - preferred_term: xenobiotic metabolic process
    term:
      id: GO:0006805
      label: xenobiotic metabolic process
    modifier: DECREASED
  genes:
  - preferred_term: UGT1A1
    term:
      id: hgnc:12530
      label: UGT1A1
  - preferred_term: DPYD
    term:
      id: hgnc:3012
      label: DPYD
  - preferred_term: TPMT
    term:
      id: hgnc:12014
      label: TPMT
  - preferred_term: NUDT15
    term:
      id: hgnc:23063
      label: NUDT15
  evidence:
  - reference: PMID:11990381
    reference_title: "UGT1A1*28 polymorphism as a determinant of irinotecan disposition and toxicity."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      screening for UGT1A1*28 polymorphism may identify patients with lower
      SN-38 glucuronidation rates and greater susceptibility to irinotecan
      induced gastrointestinal and bone marrow toxicity.
    explanation: >-
      Links a reduced-function allele to lower inactivation of the active
      metabolite and to greater marrow toxicity, which is the claim this node
      makes.
  - reference: PMID:12209976
    reference_title: "Increased risk of grade IV neutropenia after administration of 5-fluorouracil due to a dihydropyrimidine dehydrogenase deficiency: high prevalence of the IVS14+1g>a mutation."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Dihydropyrimidine dehydrogenase (DPD) is the initial and rate-limiting
      enzyme in the catabolism of 5-fluorouracil (5-FU), and it is suggested
      that patients with a partial deficiency of this enzyme are at risk of
      developing severe 5-FU-associated toxicity.
    explanation: >-
      States the rate-limiting inactivation step for fluorouracil and ties
      partial enzyme deficiency to severe toxicity.
  - reference: PMID:41618934
    reference_title: "Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for Thiopurine Dosing Based on TPMT and NUDT15 Genotypes: 2025 Update."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Thiopurine methyltransferase (TPMT) and Nudix hydrolase 15 (NUDT15) are
      key enzymes that catabolize thiopurines. Decreased or no-function alleles
      in TPMT and NUDT15 are associated with reduced or no enzyme activity and
      predictive of pronounced adverse effects, including severe
      myelosuppression, that may occur among individuals treated with standard
      doses of thiopurines.
    explanation: >-
      Names TPMT and NUDT15 as the thiopurine-catabolising enzymes and links
      reduced-function alleles to severe myelosuppression. Evidence source is
      OTHER because this is a consensus dosing guideline.
  downstream:
  - target: Cytotoxic chemotherapy exposure and hematopoietic progenitor injury
    causal_link_type: DIRECT
    description: >-
      Reduced inactivation raises the active-drug exposure the marrow receives
      for an unchanged administered dose, amplifying the progenitor injury
      rather than creating it.
- name: Cytotoxic chemotherapy exposure and hematopoietic progenitor injury
  biological_scale: CELLULAR
  conforms_to: "myelosuppression#Cytotoxic Insult to Proliferating Hematopoietic Progenitors"
  description: >-
    Myelosuppressive chemotherapy delivers cytotoxic drugs to the bone marrow,
    where rapidly proliferating hematopoietic stem and progenitor cells are
    preferentially injured — the conserved initiating lesion of the
    myelosuppression module, here viewed through its granulocytic consequence.
  role: trigger
  cell_types:
  - preferred_term: hematopoietic stem cell
    term:
      id: CL:0000037
      label: hematopoietic stem cell
  - preferred_term: hematopoietic progenitor cell
    term:
      id: CL:0008001
      label: hematopoietic precursor cell
  biological_processes:
  - preferred_term: apoptotic process
    term:
      id: GO:0006915
      label: apoptotic process
    modifier: INCREASED
  evidence:
  - reference: PMID:34307165
    reference_title: "Improving Outcomes of Chemotherapy: Established and Novel Options for Myeloprotection in the COVID-19 Era."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Proliferating hematopoietic stem and progenitor cells (HSPCs) in the bone
      marrow are particularly susceptible to chemotherapy-induced damage.
    explanation: >-
      Establishes chemotherapy injury to proliferating marrow progenitors as the
      initiating lesion, matching the module trigger node this disease conforms
      to. Evidence source is OTHER because this is a review article.
  - reference: PMID:31504118
    reference_title: "Myelopreservation with the CDK4/6 inhibitor trilaciclib in patients with small-cell lung cancer receiving first-line chemotherapy: a phase Ib/randomized phase II trial."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Chemotherapy-induced damage of hematopoietic stem and progenitor cells
      (HSPC) causes multi-lineage myelosuppression.
    explanation: >-
      A human clinical trial frames chemotherapy-induced HSPC damage as the cause
      of myelosuppression, of which neutropenia is the predominant lineage here.
  - reference: PMID:31988457
    reference_title: "On-chip recapitulation of clinical bone marrow toxicities and patient-specific pathophysiology."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      a vascularized human BM-on-a-chip (BM chip) supports the differentiation
      and maturation of multiple blood cell lineages over 4 weeks while improving
      CD34+ cell maintenance, and that it recapitulates aspects of BM injury,
      including myeloerythroid toxicity after clinically relevant exposures to
      chemotherapeutic drugs and ionizing radiation, as well as BM recovery after
      drug-induced myelosuppression
    explanation: >-
      New Approach Methodology (NAM) evidence (Wyss Institute human bone-marrow
      organ-on-chip, the "bone marrow" example highlighted in Don Ingber's
      NAMeRS 2026 case study on real-world human-chip implementation). A
      vascularized human BM chip recapitulates clinically relevant
      chemotherapeutic- and radiation-induced myelosuppression of proliferating
      hematopoietic progenitors — and subsequent recovery — providing a
      human-specific microphysiological model of the initiating marrow lesion of
      chemotherapy-induced neutropenia without animal testing.
  downstream:
  - target: Cell-cycle-dependent vulnerability of proliferating progenitors
    causal_link_type: DIRECT
    description: >-
      Cytotoxic agents act on cells traversing S phase and mitosis, so the injury
      is conditional on the progenitor pool actively cycling.
- name: Cell-cycle-dependent vulnerability of proliferating progenitors
  description: >-
    Marrow toxicity is not simply a matter of drug reaching the bone marrow: it
    depends on the haematopoietic stem and progenitor pool being in active cell
    cycle when the cytotoxic agent arrives. That cell-cycle dependence is what
    makes the marrow a preferential target, and it is also a pharmacologically
    addressable step - holding progenitors in G1 for the duration of drug
    exposure protects them without changing the drug or its dose.
  role: mechanism
  biological_scale: CELLULAR
  cell_types:
  - preferred_term: hematopoietic stem cell
    term:
      id: CL:0000037
      label: hematopoietic stem cell
  - preferred_term: hematopoietic progenitor cell
    term:
      id: CL:0008001
      label: hematopoietic precursor cell
  biological_processes:
  - preferred_term: cell cycle
    term:
      id: GO:0007049
      label: cell cycle
  evidence:
  - reference: PMID:33861388
    reference_title: "Trilaciclib: First Approval."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      trilaciclib induces a transient, reversible G1 cell cycle arrest of
      proliferating haematopoietic stem and progenitor cells in bone marrow,
      thus protecting them from damage during chemotherapy
    explanation: >-
      Pharmacological demonstration that the vulnerability is cell-cycle
      dependent: removing progenitors from cycle protects them from an otherwise
      unchanged chemotherapy exposure, which is the evidence that this is a
      distinct mechanistic step rather than a restatement of the trigger.
  downstream:
  - target: Bone marrow granulopoietic suppression
    causal_link_type: DIRECT
    description: >-
      Loss of cycling progenitors depletes the granulocytic pool the marrow can
      produce.
- name: Bone marrow granulopoietic suppression
  biological_scale: TISSUE
  conforms_to: "myelosuppression#Bone Marrow Hematopoietic Suppression"
  description: >-
    Loss of functional progenitors suppresses bone marrow hematopoietic output.
    In this entry the suppression is viewed through its effect on granulopoiesis,
    reducing the marrow's capacity to replace circulating neutrophils.
  role: central_effector
  cell_types:
  - preferred_term: hematopoietic stem cell
    term:
      id: CL:0000037
      label: hematopoietic stem cell
  biological_processes:
  - preferred_term: hemopoiesis
    term:
      id: GO:0030097
      label: hemopoiesis
    modifier: DECREASED
  evidence:
  - reference: PMID:40057216
    reference_title: "Marrow adipogenic lineage precursors (MALPs) facilitate bone marrow recovery after chemotherapy."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: >-
      The resultant bone marrow suppression is a major dose-limiting side effect.
    explanation: >-
      Identifies marrow suppression as the dose-limiting consequence of
      chemotherapy hematopoietic toxicity, matching the module central-effector
      node. Evidence source is MODEL_ORGANISM (mouse 5-fluorouracil study).
  downstream:
  - target: Peripheral neutropenia
    description: >-
      Suppressed granulopoiesis lowers the circulating neutrophil count.
- name: Peripheral neutropenia
  biological_scale: ORGANISM
  conforms_to: "myelosuppression#Multilineage Peripheral Cytopenias"
  description: >-
    Reduced marrow output lowers the circulating neutrophil count. This node
    specializes the module's multilineage-cytopenia effector to the neutrophil
    lineage, the predominant and most clinically consequential cytopenia for many
    regimens.
  role: effector
  cell_types:
  - preferred_term: neutrophil
    term:
      id: CL:0000775
      label: neutrophil
  biological_processes:
  - preferred_term: myeloid cell homeostasis
    term:
      id: GO:0002262
      label: myeloid cell homeostasis
    modifier: DECREASED
  evidence:
  - reference: PMID:34307165
    reference_title: "Improving Outcomes of Chemotherapy: Established and Novel Options for Myeloprotection in the COVID-19 Era."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      one of the most common side effects of chemotherapy is myelosuppression,
      which typically manifests as neutropenia, anemia, thrombocytopenia, and/or
      lymphopenia
    explanation: >-
      Lists neutropenia among the manifestations of chemotherapy-induced
      myelosuppression, the lineage specialized in this node. Evidence source is
      OTHER because this is a review article.
  downstream:
  - target: Febrile neutropenia and infection susceptibility
    description: >-
      A low neutrophil count raises the risk of infection and febrile
      neutropenia.
  - target: Neutropenia
    causal_link_type: DIRECT
    description: >-
      The fall in circulating neutrophils is what is measured as the defining
      laboratory abnormality of this toxicity.
- name: Febrile neutropenia and infection susceptibility
  biological_scale: ORGANISM
  conforms_to: "myelosuppression#Cytopenia-Related Clinical Complications"
  description: >-
    Neutropenia impairs host defense, raising the risk of infection and febrile
    neutropenia — the principal driver of morbidity and mortality and the reason
    chemotherapy doses are delayed or reduced.
  role: consequence
  cell_types:
  - preferred_term: neutrophil
    term:
      id: CL:0000775
      label: neutrophil
  biological_processes:
  - preferred_term: leukocyte mediated immunity
    term:
      id: GO:0002443
      label: leukocyte mediated immunity
    modifier: DECREASED
  evidence:
  - reference: PMID:21095116
    reference_title: "2010 update of EORTC guidelines for the use of granulocyte-colony stimulating factor to reduce the incidence of chemotherapy-induced febrile neutropenia in adult patients with lymphoproliferative disorders and solid tumours."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Chemotherapy-induced neutropenia is a major risk factor for
      infection-related morbidity and mortality and also a significant
      dose-limiting toxicity in cancer treatment.
    explanation: >-
      Establishes neutropenia as the driver of infection-related morbidity and as
      a dose-limiting toxicity, the consequence captured by the module node.
      Evidence source is OTHER because this is a guideline document.
  - reference: PMID:38587388
    reference_title: "The impact of myelosuppression on quality of life of patients treated with chemotherapy."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Neutropenia increases infection risk, and anemia frequently results in
      debilitating fatigue.
    explanation: >-
      Maps neutropenia to its characteristic infection complication. Evidence
      source is OTHER because this is a review article.
  downstream:
  - target: Recurrent infections
    causal_link_type: DIRECT
    description: >-
      Impaired neutrophil-mediated host defence is what presents clinically as
      increased susceptibility to infection.
phenotypes:
- name: Neutropenia
  description: >-
    Reduced circulating neutrophil count, the defining laboratory abnormality of
    this toxicity.
  phenotype_term:
    preferred_term: Neutropenia
    term:
      id: HP:0001875
      label: Decreased total neutrophil count
  evidence:
  - reference: PMID:34307165
    reference_title: "Improving Outcomes of Chemotherapy: Established and Novel Options for Myeloprotection in the COVID-19 Era."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      one of the most common side effects of chemotherapy is myelosuppression,
      which typically manifests as neutropenia, anemia, thrombocytopenia, and/or
      lymphopenia
    explanation: >-
      Names neutropenia among the defining manifestations of chemotherapy-induced
      myelosuppression. Evidence source is OTHER because this is a review.
- name: Recurrent infections
  description: >-
    Increased susceptibility to infection, including febrile neutropenia,
    downstream of the low neutrophil count.
  phenotype_term:
    preferred_term: Increased susceptibility to infection
    term:
      id: HP:0002719
      label: Recurrent infections
  evidence:
  - reference: PMID:21095116
    reference_title: "2010 update of EORTC guidelines for the use of granulocyte-colony stimulating factor to reduce the incidence of chemotherapy-induced febrile neutropenia in adult patients with lymphoproliferative disorders and solid tumours."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Chemotherapy-induced neutropenia is a major risk factor for
      infection-related morbidity and mortality and also a significant
      dose-limiting toxicity in cancer treatment.
    explanation: >-
      Establishes infection-related morbidity and mortality as the principal
      complication of chemotherapy-induced neutropenia. Evidence source is OTHER
      because this is a guideline document.
genetic:
- name: UGT1A1 pharmacogenomic susceptibility
  gene_term:
    preferred_term: UGT1A1
    term:
      id: hgnc:12530
      label: UGT1A1
  association: Reduced-function UGT1A1 variants increase irinotecan-associated neutropenia risk
  relationship_type: RISK_FACTOR
  variant_origin: GERMLINE
  notes: >-
    Reduced UGT1A1 activity limits SN-38 glucuronidation after irinotecan
    exposure, increasing bone marrow toxicity including neutropenia. Two alleles
    carry most of the reported signal: *28, an extra TA repeat in the UGT1A1
    promoter TATA sequence, and *6, whose association with severe
    irinotecan-induced neutropenia has been quantified mainly in Chinese and
    Japanese study populations.
  variants:
  - name: UGT1A1*28
    description: >-
      Promoter repeat allele - an additional TA repeat in the TATA sequence -
      associated with lower SN-38 glucuronidation and increased irinotecan
      myelotoxicity susceptibility.
  - name: UGT1A1*6
    description: >-
      Allele associated with an increased risk of severe irinotecan-induced
      neutropenia in a meta-analysis of twelve studies.
  evidence:
  - reference: PMID:11990381
    reference_title: "UGT1A1*28 polymorphism as a determinant of irinotecan disposition and toxicity."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      screening for UGT1A1*28 polymorphism may identify patients with lower
      SN-38 glucuronidation rates and greater susceptibility to irinotecan
      induced gastrointestinal and bone marrow toxicity.
    explanation: >-
      Human pharmacokinetic evidence links UGT1A1*28 to greater irinotecan bone
      marrow toxicity, of which neutropenia is the principal manifestation.
  - reference: PMID:28585035
    reference_title: "UGT1A1*6 polymorphisms are correlated with irinotecan-induced neutropenia: a systematic review and meta-analysis."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Patients with recessive models (GA + AA vs. GG) of UGT1A1*6 showed an increased risk (OR 2.03, 95% CI 1.54-2.68; RD = 0.11, P < 0.001)."
    explanation: >-
      Quantifies the UGT1A1*6 association with severe irinotecan-induced
      neutropenia across twelve studies, the neutrophil-specific endpoint this
      entry is about.
- name: DPYD pharmacogenomic susceptibility
  gene_term:
    preferred_term: DPYD
    term:
      id: hgnc:3012
      label: DPYD
  association: Reduced-function DPYD variants increase fluoropyrimidine-associated neutropenia risk
  relationship_type: RISK_FACTOR
  variant_origin: GERMLINE
  notes: >-
    DPYD encodes dihydropyrimidine dehydrogenase, the rate-limiting enzyme of
    fluorouracil catabolism. Note that the enzyme phenotype and the genotype are
    separately measured in the founding series: the 3.4-fold excess of grade IV
    neutropenia is reported for patients with partial DPD enzyme deficiency,
    while the IVS14+1G>A allele accounts for half of the genotyped patients who
    had grade IV neutropenia. The two are related but not the same measurement.
  variants:
  - name: DPYD IVS14+1G>A (DPYD*2A, c.1905+1G>A)
    description: >-
      Splice-site allele carried, in heterozygous or homozygous form, by 50% of
      the grade IV neutropenia patients genotyped in the founding series.
  evidence:
  - reference: PMID:12209976
    reference_title: "Increased risk of grade IV neutropenia after administration of 5-fluorouracil due to a dihydropyrimidine dehydrogenase deficiency: high prevalence of the IVS14+1g>a mutation."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Patients with partial DPD deficiency appeared to have a 3.4-fold higher
      risk of developing grade IV neutropenia than patients with normal DPD
      activity.
    explanation: >-
      Quantifies the neutrophil-specific excess risk associated with reduced DPD
      activity, the enzyme DPYD encodes.
  - reference: PMID:12209976
    reference_title: "Increased risk of grade IV neutropenia after administration of 5-fluorouracil due to a dihydropyrimidine dehydrogenase deficiency: high prevalence of the IVS14+1g>a mutation."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Analysis of the DPYD gene of patients suffering from grade IV neutropenia
      for the presence of the IVS14+1G>A mutation showed that 50% of the
      patients investigated were heterozygous or homozygous for the IVS14+1G>A
      mutation.
    explanation: >-
      Ties the enzyme deficiency to a specific DPYD allele in the patients who
      developed grade IV neutropenia.
  - reference: PMID:30348537
    reference_title: "DPYD genotype-guided dose individualisation of fluoropyrimidine therapy in patients with cancer: a prospective safety analysis."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Prospective DPYD genotyping was feasible in routine clinical practice, and
      DPYD genotype-based dose reductions improved patient safety of
      fluoropyrimidine treatment.
    explanation: >-
      Prospective multicentre evidence that acting on the genotype changes the
      toxicity outcome. The endpoint is overall severe fluoropyrimidine toxicity
      rather than neutropenia alone, so it supports the actionability of the
      locus rather than the neutrophil-specific effect size.
- name: TPMT pharmacogenomic susceptibility
  gene_term:
    preferred_term: TPMT
    term:
      id: hgnc:12014
      label: TPMT
  association: Reduced-function TPMT alleles increase thiopurine-associated myelosuppression risk
  relationship_type: RISK_FACTOR
  variant_origin: GERMLINE
  notes: >-
    TPMT methylates thiopurines to inactive metabolites, so reduced-function
    alleles leave more drug available for conversion to active thioguanine
    nucleotides. Within oncology the relevant agents are mercaptopurine, the
    backbone of acute lymphoblastic leukaemia maintenance regimens, and
    thioguanine; azathioprine, the third thiopurine covered by the same
    guideline, is an immunosuppressant rather than an antineoplastic and is out
    of scope for this entry.
  evidence:
  - reference: PMID:41618934
    reference_title: "Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for Thiopurine Dosing Based on TPMT and NUDT15 Genotypes: 2025 Update."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Thiopurine methyltransferase (TPMT) and Nudix hydrolase 15 (NUDT15) are
      key enzymes that catabolize thiopurines. Decreased or no-function alleles
      in TPMT and NUDT15 are associated with reduced or no enzyme activity and
      predictive of pronounced adverse effects, including severe
      myelosuppression, that may occur among individuals treated with standard
      doses of thiopurines.
    explanation: >-
      The consensus dosing guideline states the TPMT mechanism and the
      myelosuppression consequence. Evidence source is OTHER because this is a
      guideline rather than a primary study.
- name: NUDT15 pharmacogenomic susceptibility
  gene_term:
    preferred_term: NUDT15
    term:
      id: hgnc:23063
      label: NUDT15
  association: Reduced-function NUDT15 alleles increase thiopurine-associated neutropenia risk
  relationship_type: RISK_FACTOR
  variant_origin: GERMLINE
  notes: >-
    NUDT15 is one of the two enzymes that catabolise thiopurines, and the
    c.415C>T (p.Arg139Cys) allele carries most of the thiopurine-toxicity signal
    in East Asian populations, where TPMT variants are less frequent than in
    people of European descent while thiopurine-induced leukopenia is more
    common. The effect size is larger for leukopenia than for neutropenia in the
    leukaemia meta-analysis below, so the two endpoints should not be quoted
    interchangeably.
  variants:
  - name: NUDT15 c.415C>T (p.Arg139Cys)
    description: >-
      The allele carrying most of the reported thiopurine myelosuppression
      signal in acute lymphoblastic leukaemia cohorts.
  evidence:
  - reference: PMID:37794799
    reference_title: "Association of NUDT15 gene polymorphism with adverse reaction, treatment efficacy, and dose of 6-mercaptopurine in patients with acute lymphoblastic leukemia: a systematic review and meta-analysis."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "We found 9-fold higher risk of 6-MP induced leukopenia (odds ratio [OR] =9.00, 95% confidence interval [CI]: 3.73-21.74) and 2.5-fold higher risk of 6-MP-induced neutropenia (OR=2.52, 95% CI: 1.72-3.69) for NUDT15 c.415C>T variant carriers in the dominant model."
    explanation: >-
      Quantifies the neutropenia-specific risk in patients receiving
      mercaptopurine as leukaemia chemotherapy, which is the exposure and the
      endpoint this entry is about.
  - reference: PMID:25108385
    reference_title: A common missense variant in NUDT15 confers susceptibility to thiopurine-induced leukopenia.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Despite a lower frequency of TPMT mutations in Asians, the incidence of thiopurine-induced leukopenia is higher in Asians than in individuals of European descent."
    explanation: >-
      Supports the population asymmetry stated in the notes, which is why NUDT15
      rather than TPMT carries most of the signal in East Asian cohorts.
  - reference: PMID:25108385
    reference_title: A common missense variant in NUDT15 confers susceptibility to thiopurine-induced leukopenia.
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "We identified a nonsynonymous SNP in NUDT15 (encoding p.Arg139Cys) that was strongly associated with thiopurine-induced early leukopenia (odds ratio (OR) = 35.6; P(combined) = 4.88 × 10(-94))."
    explanation: >-
      The founding association report for the allele, with a leukopenia rather
      than a neutropenia endpoint.
  - reference: PMID:41618934
    reference_title: "Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for Thiopurine Dosing Based on TPMT and NUDT15 Genotypes: 2025 Update."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Thiopurine methyltransferase (TPMT) and Nudix hydrolase 15 (NUDT15) are
      key enzymes that catabolize thiopurines. Decreased or no-function alleles
      in TPMT and NUDT15 are associated with reduced or no enzyme activity and
      predictive of pronounced adverse effects, including severe
      myelosuppression, that may occur among individuals treated with standard
      doses of thiopurines.
    explanation: >-
      The consensus dosing guideline states the NUDT15 mechanism and the
      myelosuppression consequence. Evidence source is OTHER because this is a
      guideline rather than a primary study.
treatments:
- name: Trilaciclib
  description: >-
    A short-acting intravenous CDK4/6 inhibitor given before chemotherapy rather
    than as treatment for established neutropenia. It holds haematopoietic stem
    and progenitor cells in a transient, reversible G1 arrest for the duration of
    cytotoxic exposure, so the marrow is protected without altering the
    chemotherapy regimen. Approved in the USA in February 2021 for extensive-stage
    small cell lung cancer receiving platinum/etoposide or topotecan. This is
    prophylactic myeloprotection, mechanistically distinct from G-CSF, which
    accelerates recovery after the injury has occurred.
  therapeutic_modality: SMALL_MOLECULE
  treatment_term:
    preferred_term: Pharmacotherapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
  target_mechanisms:
  - target: Cell-cycle-dependent vulnerability of proliferating progenitors
    treatment_effect: INHIBITS
    description: >-
      CDK4/6 inhibition arrests progenitors in G1, removing them from the cycling
      state on which cytotoxic injury depends.
  evidence:
  - reference: PMID:33861388
    reference_title: "Trilaciclib: First Approval."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      In February 2021, trilaciclib received its first approval in the USA to
      decrease the incidence of chemotherapy-induced myelosuppression in adult
      patients when administered prior to a platinum/etoposide-containing regimen
      or topotecan-containing regimen for extensive-stage small cell lung cancer
      (ES-SCLC).
    explanation: >-
      Establishes the approved indication and the pre-chemotherapy timing that
      distinguishes myeloprotection from post-hoc rescue.
  - reference: PMID:31504118
    reference_title: "Myelopreservation with the CDK4/6 inhibitor trilaciclib in patients with small-cell lung cancer receiving first-line chemotherapy: a phase Ib/randomized phase II trial."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Trilaciclib clinically and significantly reduced both the duration of
      severe neutropenia (DSN) in cycle 1, a surrogate for febrile neutropenia
      (FN) and infections, and the occurrence of severe neutropenia (SN)
    explanation: >-
      The pivotal randomized evidence for the neutrophil endpoint this entry is
      about, reporting reductions in both the duration and the occurrence of
      severe neutropenia. This is the primary trial underlying the approval that
      PMID:33861388 reports.
  - reference: PMID:31504118
    reference_title: "Myelopreservation with the CDK4/6 inhibitor trilaciclib in patients with small-cell lung cancer receiving first-line chemotherapy: a phase Ib/randomized phase II trial."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      For those patients in the trilaciclib group who did experience SN, the
      duration of those events was shorter compared with placebo (median
      duration of 3 versus 8 days).
    explanation: >-
      Quantifies the residual benefit in patients who still developed severe
      neutropenia, showing the effect is a shift in severity rather than a
      binary prevention.
  - reference: PMID:34408488
    reference_title: "Myeloprotective Effects of Trilaciclib Among Patients with Small Cell Lung Cancer at Increased Risk of Chemotherapy-Induced Myelosuppression: Pooled Results from Three Phase 2, Randomized, Double-Blind, Placebo-Controlled Studies."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Across FN risk factors and categories, trilaciclib had beneficial effects
      on neutrophil-related endpoints vs placebo, with greater effects observed
      in patients at higher risk of FN.
    explanation: >-
      Pooled placebo-controlled phase 2 evidence for the neutrophil-specific
      benefit, which is the endpoint this entry is about.
  notes: >-
    therapeutic_agent is deliberately omitted: no verified CHEBI or NCIT CURIE
    for trilaciclib was available from the local caches, and the ontology service
    was unreachable at curation time. A guessed identifier would be worse than
    none; this should be bound once the term can be checked.
- name: Granulocyte colony-stimulating factor (G-CSF)
  target_mechanisms:
  - target: Bone marrow granulopoietic suppression
    treatment_effect: RESTORES
    description: >-
      G-CSF drives granulocytic differentiation and release from the surviving
      progenitor pool, shortening the depth and duration of the neutrophil nadir
      after the marrow injury has already occurred.
  description: >-
    Prophylactic or therapeutic G-CSF (filgrastim, lenograstim, pegfilgrastim)
    reduces the incidence and duration of chemotherapy-induced neutropenia and
    febrile neutropenia.
  treatment_term:
    preferred_term: Pharmacotherapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
    therapeutic_agent:
    - preferred_term: filgrastim
      term:
        id: NCIT:C1474
        label: Filgrastim
  evidence:
  - reference: PMID:21095116
    reference_title: "2010 update of EORTC guidelines for the use of granulocyte-colony stimulating factor to reduce the incidence of chemotherapy-induced febrile neutropenia in adult patients with lymphoproliferative disorders and solid tumours."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      prophylactic treatment with granulocyte-colony stimulating factors
      (G-CSFs), such as filgrastim (including approved biosimilars), lenograstim
      or pegfilgrastim is available to reduce the risk of chemotherapy-induced
      neutropenia
    explanation: >-
      The EORTC guideline identifies prophylactic G-CSF as the standard
      intervention to reduce chemotherapy-induced neutropenia. Evidence source is
      OTHER because this is a guideline document.
notes: >-
  This entry has no gene-defined subtypes, and it should not acquire any. It
  models an acquired drug toxicity: the lesion is cytotoxic injury to cycling
  marrow progenitors, and the host genetics that matter are the
  drug-inactivating enzymes that set how much active drug the progenitors see.
  Those are carried in genetic[] as RISK_FACTOR relationships wired to the
  pharmacogenetic node, which is the accurate claim - a reduced-function
  UGT1A1, DPYD, TPMT or NUDT15 allele does nothing without the drug, and causes
  no disease in an unexposed carrier.

  The inherited severe congenital neutropenia syndromes are a different kind of
  disease and belong in their own entries. Each is a germline Mendelian
  disorder of granulopoiesis present from birth and independent of any drug;
  dismech already curates one of them in full as
  Severe_Congenital_Neutropenia_1_Autosomal_Dominant, anchored on MONDO:0042490
  and modelled as a sibling of the others rather than as a subtype of anything
  acquired. Stubs exist for WHIM syndrome 1 and for CSF3R-deficiency severe
  congenital neutropenia. MONDO:1060165 ELANE-related neutropenia is the parent
  of MONDO:0042490, so the ELANE arm is covered by that entry.

  Those syndromes touch this entry only through the ontology. Every one of
  ELANE-related neutropenia, Kostmann syndrome, WHIM syndrome 1, X-linked
  severe congenital neutropenia, the CSF3R, CXCR2 and JAGN1 recessive forms,
  congenital neutropenia-myelofibrosis-nephromegaly syndrome, severe congenital
  neutropenia 2, 8, 9 and 12, and poikiloderma with neutropenia is an is_a
  descendant of MONDO:0001475 neutropenia. That term is not this entry's
  identity and is held as a broadMatch cross-reference rather than as a
  `disease_term` binding: binding it would assert identity with the general
  neutropenia class, which makes every inherited neutropenia a descendant of a
  drug toxicity. See mappings.mondo_mappings for the searches establishing that
  MONDO has no drug-induced neutropenia class to bind instead.

  The GeneReviews baseline check matches the chapter titled ELANE-Related
  Neutropenia against this entry on the word "neutropenia". That chapter is
  about the inherited ELANE disease, not about chemotherapy toxicity, so it is
  deliberately neither cited nor tagged here. There is no GeneReviews chapter
  for chemotherapy-induced neutropenia, which is expected: GeneReviews covers
  heritable disorders.
📚

References & Deep Research

Deep Research

1

Deep research results are used as seeds for research; they do not undergo the same validation as the main records and may contain errors. How we use deep research.

Claude Code ▸
Chemotherapy-Induced Neutropenia (CIN) — Comprehensive Research Report
claude-haiku-4-5-20251001, claude-opus-5[1m] 40 citations 2026-08-31T20:57:37.661835

Chemotherapy-Induced Neutropenia (CIN) — Comprehensive Research Report

Prepared 2026-08-31 for dismech knowledge-base curation.

A framing note before the data: this entry is not a disease in the "broken gene → broken protein → sick person" sense. It's an iatrogenic injury — we deliberately poison a fast-dividing tissue to kill another fast-dividing tissue, and the bone marrow is collateral. So several template sections (causal genes, inheritance, natural disease in other species) don't map cleanly, and I've said so plainly rather than manufacturing content. Where the section does have a real analogue — germline pharmacogenomics standing in for "causal genes," cytotoxic drug class standing in for "environmental exposure" — I've curated that instead and flagged the substitution.

Evidence-verification status, stated up front: PMIDs marked ✅ below were retrieved and read this session (via NCBI E-utilities or PMC). PMIDs marked ⚠️ are derived from PubMed URLs and search-result summaries and were not opened directly — treat every quoted string from those as a lead, not a snippet. Before any of these become snippet: values in a dismech entry, run just fetch-reference PMID:NNNNNNNN and match the exact substring against the cache. Ontology IDs marked ✅ were resolved live against the EBI OLS4 API this session; ones marked 🔍 need a local OAK lookup before binding.


1. Disease Information

What it is

Chemotherapy-induced neutropenia is the drop in circulating neutrophils that follows cytotoxic anticancer therapy, because the drugs that hit dividing cancer cells also hit the dividing granulocyte precursors in marrow. The marrow is basically a factory running three shifts — stem cells, a dividing (mitotic) pool, and a maturing (post-mitotic) storage pool — and chemotherapy shuts down the middle shift. The warehouse keeps shipping for a few days, then runs dry. That lag is the nadir.

Its clinically dangerous form is febrile neutropenia (FN): fever arriving while the neutrophil count is on the floor, which is a medical emergency because the usual sign of infection — pus, inflammation, a visible abscess — requires neutrophils to make, and there aren't any. The fever is often the only sign.

Identifiers

Resource ID Label Status
MeSH D064146 Chemotherapy-Induced Febrile Neutropenia ✅ resolved via OLS
MedGen C3658261 Febrile Neutropenia, Chemotherapy-Induced ✅
OMIT 0028359 Chemotherapy-Induced Febrile Neutropenia ✅
MONDO MONDO:0001475 Neutropenia (parent concept) ✅
NCIT NCIT:C80520 Neutropenia — "A decrease in the number of neutrophils in the peripheral blood." ✅
NCIT NCIT:C35665 Febrile Neutropenia ✅
NCIT NCIT:C143481 Febrile Neutropenia, CTCAE ✅
NCIT NCIT:C59479 / C59715 / C59951 Grade 3 / 4 / 5 Febrile Neutropenia, CTCAE ✅
HP HP:0001875 Decreased total neutrophil count ✅
HP HP:0410255 Transiently decreased total neutrophil count ✅
HP HP:0012235 Drug-induced agranulocytosis — "<50 granulocytes per microliter" caused by drug exposure ✅
ICD-10-CM D70.1 Agranulocytosis secondary to cancer chemotherapy; D70.9 Neutropenia unspecified; T45.1X5A adverse effect of antineoplastic drugs 🔍 verify in icd10cm adapter
ICD-11 3A20.0 / 3A20 (drug-induced neutropenia branch) 🔍 verify
OMIM / Orphanet Not applicable — acquired iatrogenic condition, no OMIM or ORPHA disorder entry —

⚠️ MONDO gap — important curation finding. A direct OLS query for MONDO terms matching "chemotherapy-induced neutropenia," "drug-induced neutropenia," or "febrile neutropenia" returned nothing. MONDO carries MONDO:0001475 (Neutropenia) plus a long tail of congenital neutropenia syndromes, but no drug-induced or chemotherapy-induced child that I could resolve. Recommended handling in dismech: anchor disease_term on MONDO:0001475 with a mappings.mondo_mappings entry using mapping_predicate: skos:narrowMatch, per the design-decisions rule for promoted concepts lacking their own term, and record the gap in notes:. Do not invent a MONDO ID here — my own memory note (never guess MONDO ids) exists precisely because guessed IDs resolve to real-but-wrong concepts.

Synonyms

Chemotherapy-induced neutropenia; CIN; chemotherapy-induced myelosuppression (broader — includes anemia and thrombocytopenia); myelotoxicity; neutropenic fever; febrile neutropenia; FN; chemotherapy-induced febrile neutropenia; drug-induced agranulocytosis (when profound); bone marrow suppression.

Note the near-synonym trap: "chemotherapy-induced myelosuppression" (CIM) is the multilineage parent, of which CIN is the neutrophil lineage. Trilaciclib's label and the trilaciclib literature use CIM, not CIN. Keep the two distinguishable in the entry.

Data provenance

Both. Individual-patient EHR/claims data drive the burden and incidence figures (Boccia et al. pooled US claims and hospital datasets ✅ PMID:35552754); aggregated trial and registry data drive the regimen-specific risk estimates and the guideline thresholds.


2. Etiology

Primary cause

The cause is the drug. This is a dose-dependent, largely predictable, on-target-off-tissue toxicity, and the "genetic etiology" here is host pharmacogenomics modulating exposure, not a disease gene.

Highest-risk agent classes (mechanistic grouping):

Class Exemplars Mechanism of marrow injury
Taxanes docetaxel, paclitaxel microtubule stabilization → mitotic arrest → apoptosis of dividing progenitors
Anthracyclines doxorubicin, epirubicin topoisomerase II poisoning + DNA intercalation + ROS
Alkylators cyclophosphamide, ifosfamide, bendamustine DNA crosslinking; hits quiescent HSC as well as cycling progenitors
Platinums carboplatin (> cisplatin) DNA adducts; carboplatin notably myelosuppressive, cisplatin comparatively not
Topo-I inhibitors topotecan, irinotecan topoisomerase I trapping → replication-fork collapse
Antimetabolites 5-FU, gemcitabine, methotrexate, cytarabine S-phase nucleotide starvation / fraudulent nucleotide incorporation
ADCs sacituzumab govitecan, trastuzumab deruxtecan payload (SN-38, DXd) released systemically reaches marrow

High-FN-risk (>20%) regimen exemplars documented in the literature: TAC (docetaxel/doxorubicin/cyclophosphamide) is consistently classified >20% ⚠️; TC (docetaxel 75 + cyclophosphamide 600 q3w) has reported FN rates spanning 4–69% across studies, and a meta-analysis supports G-CSF primary prophylaxis for it ⚠️ PMID:26337685; TPF (docetaxel/cisplatin/5-FU) for head and neck ⚠️; dose-dense AC-T; R-CHOP in older lymphoma patients; topotecan and platinum-etoposide in SCLC.

Risk factors

Treatment-related (dominant): - Regimen myelotoxicity and dose intensity — the single largest determinant - Prior chemotherapy or radiotherapy (especially pelvic/vertebral fields — marrow reserve is a bank account you can overdraw) - Concurrent radiotherapy - Cycle number: FN clusters in cycle 1 — a prospective multinational MASCC study of 364 patients across 1,601 cycles found FN in 5% of first cycles, 3% in cycles 2–3, 1% in cycles 4–6, with 9% of patients having ≥1 FN episode and 59% of all FN events occurring in cycle 1 ⚠️ (PMC10570161). That front-loading is why primary prophylaxis beats secondary.

Patient-related: - Age ≥65 — the most consistently replicated host risk factor - Low baseline ANC / low pretreatment absolute lymphocyte count / low pretreatment monocyte count ⚠️ (PMC5922370) - Poor performance status, low albumin, low BMI (or, in some analyses, obesity via dosing practice) - Bone marrow involvement by tumor - Renal or hepatic impairment (reduced drug clearance → higher exposure) - Comorbidities: cardiovascular, hepatic, diabetes - Advanced disease stage; hematologic malignancy > solid tumor - Open wounds / active infection

Genetic risk factors — see §4, but in brief: DPYD (fluoropyrimidines), UGT1A1 (irinotecan), TPMT and NUDT15 (thiopurines), CYP2B6 (cyclophosphamide), CDA (gemcitabine/capecitabine), plus GWAS hits at SLC15A1, NR1I2(PXR), FMO3, and platinum loci at 2q24.3 and 17p12.

Environmental / lifestyle: malnutrition; poor dentition and periodontal disease (a portal of entry); crowded or high-exposure living or occupational settings; no strong evidence that smoking or alcohol independently drive CIN incidence, though both correlate with comorbidity burden.

Protective factors

  • G-CSF prophylaxis — the dominant modifiable protective factor (§12)
  • Trilaciclib — pharmacologic myeloprotection via transient G1 arrest of HSPCs
  • Dose reduction / schedule modification — protective against FN but at the cost of relative dose intensity (§11); a genuine two-edged trade
  • Genetic: the flip side of the pharmacogene story — normal-function DPYD, UGT1A1*1/*1, wild-type TPMT/NUDT15 are effectively protective alleles for the corresponding drugs
  • Higher baseline ANC — and this is where the Duffy story sits (§4/§9), because a lower baseline ANC in Duffy-null individuals is NOT a risk factor for infection, but is systematically misread as one

Gene–environment interaction

This condition is almost the platonic case of GxE: the "environment" is a precisely dosed, precisely timed chemical exposure, and the genotype sets the exposure–response curve. A DPYD poor metabolizer given standard 5-FU experiences a pharmacokinetic exposure several-fold higher than intended; the same genotype with no fluoropyrimidine exposure is clinically silent. CPIC and DPWG both publish genotype-directed dose reductions, and DPYD/UGT1A1 pre-emptive genotyping is now implemented in multiple health systems ⚠️ (PMC8827955, PMC9262778).


3. Phenotypes

The defining feature of CIN's phenotype list is what's missing: neutropenia is largely asymptomatic until it isn't. Without neutrophils you cannot mount the local inflammatory response that produces the usual signs of infection, so a patient can go from "fine" to "septic" with almost no intermediate signal. Fever is often the only manifestation, and that's precisely why it's treated as an emergency.

Phenotype Category HP suggestion Onset Severity Course Frequency
Decreased absolute neutrophil count Laboratory HP:0001875 ✅ (consider temporality: TRANSIENT, or HP:0410255 ✅) Days 5–14 post-infusion Mild→profound Episodic, cycle-locked Near-universal with myelosuppressive regimens; grade 3–4 in a large minority
Profound neutropenia / agranulocytosis (ANC <100–500/µL) Laboratory HP:0012235 ✅ (drug-induced agranulocytosis) Nadir Severe Episodic Regimen-dependent
Fever (the FN presentation) Sign 🔍 look up HP "Fever" At nadir Severe by definition Acute, episodic ~9% of patients over a course in intermediate-risk regimens ⚠️
Bacteremia / bloodstream infection Sign 🔍 At nadir Severe Acute Documented in a minority of FN episodes; most FN is culture-negative
Sepsis / septic shock Sign 🔍 At nadir Life-threatening Acute Drives most FN mortality
Oral mucositis / oropharyngeal ulceration Sign 🔍 Days 5–10 Mild→severe Episodic Common; mechanistically coupled to CIN (§6)
Perianal cellulitis / typhlitis (neutropenic enterocolitis) Sign 🔍 At nadir Severe Acute Uncommon but high-lethality
Invasive fungal infection Sign HP:0020101 ✅ Prolonged neutropenia (>7 days) Severe Acute Risk rises steeply with duration
Invasive pulmonary aspergillosis Sign HP:0020103 ✅ Prolonged neutropenia Severe Acute Mostly hematologic malignancy / HSCT
Severe Candida infection Sign HP:6001283 ✅ (definition explicitly references profound chemotherapy neutropenia) Prolonged Severe Acute —
Concurrent anemia Laboratory 🔍 Cumulative Variable Progressive over cycles Multilineage CIM
Concurrent thrombocytopenia Laboratory 🔍 Days 7–14 Variable Episodic Multilineage CIM
Fatigue Symptom 🔍 Throughout Moderate Fluctuating Very common; largest QoL driver
Treatment delay / dose reduction Not a phenotype — model as clinical_burden or progression — — — — —

Severity grading — and a 2025 change you must not miss.

CTCAE v5.0 "Neutrophil count decreased," ANC thresholds ⚠️: - Grade 1: <LLN – ≥1500/µL - Grade 2: <1500 – ≥1000/µL - Grade 3: <1000 – ≥500/µL - Grade 4: <500/µL

CTCAE v6.0 (released 2025) shifted every band down one notch ✅ PMID:41158990 (Merz LE, HemaSphere 2025;9(10):e70242): - Grade 1: <1500 – 1000/µL - Grade 2: <1000 – 500/µL - Grade 3: <500 – 100/µL - Grade 4: <100/µL

The paper's own framing, quoted from the article: "It is no longer accurate or appropriate to use neutropenia severity grading from the 1980s to assess treatments from the 2020s." Two drivers: modern agents aren't 1980s cytotoxics, and the old thresholds pathologized the normal ANC range of Duffy-null individuals. Any dismech entry citing a "grade 3/4 neutropenia" rate must state which CTCAE version the source used — the same patient reclassifies between v5 and v6.

Febrile neutropenia definition (IDSA/common clinical): single oral temperature ≥38.3 °C (101 °F), or ≥38.0 °C sustained over one hour, plus ANC <500/µL or <1000/µL with predicted decline to <500 ⚠️. Note that some sources cite ANC <1500 for the FN definition; the <500 threshold is the operational one.

Quality of life. Trilaciclib trials measured patient-reported outcomes alongside myeloprotection endpoints and reported improvements in fatigue and physical wellbeing domains ✅ PMID:34408488. Beyond the direct symptom burden, CIN drives hospitalization (average LOS 6–10 days ✅ PMID:35552754), social isolation during nadir periods, and the anxiety of the "call us if you have a fever" instruction that reorganizes a patient's whole month around a thermometer.


4. Genetic / Molecular Information

Causal genes: none. There is no germline or somatic mutation that causes CIN. What genetics contributes is susceptibility magnitude — how much drug exposure a given host generates from a given dose, and how readily their progenitors die from it.

Pharmacogenes with actionable, guideline-backed evidence

Gene HGNC Drug(s) Key variants Consequence Effect
DPYD hgnc:3012 🔍 5-FU, capecitabine *2A (rs3918290), rs67376798 (D949V), *13 (rs55886062), HapB3 (rs75017182) Reduced/absent dihydropyrimidine dehydrogenase → impaired pyrimidine catabolism Severe myelosuppression, mucositis; CPIC dose reduction; EMA mandates pre-treatment testing ⚠️
UGT1A1 hgnc:12530 🔍 irinotecan *28 (TA7 promoter repeat), *6 (rs4148323, East Asian) Reduced glucuronidation of active metabolite SN-38 rs4148323 "correlated with irinotecan neutropenia"; IM and PM phenotypes were "independent risk factors for febrile neutropenia" in FOLFIRINOX ⚠️ (PMC8909027)
TPMT hgnc:12014 🔍 thiopurines (6-MP, azathioprine) *2, *3A, *3C Loss of S-methylation → accumulated thioguanine nucleotides Severe, prolonged myelosuppression
NUDT15 hgnc:23063 🔍 thiopurines *3 (rs116855232), *6 "Impaired breakdown of active thiopurine metabolites" Leukopenia/neutropenia; particularly important in East Asian ancestry. Combined TPMT+NUDT15 "could explain up to 50% of thiopurine-related toxicities" ⚠️. Case report of severe myelosuppression with *1/*6 ⚠️ PMID:42286409
CYP2B6 🔍 cyclophosphamide *6 Altered bioactivation to 4-OH-CPA Variable exposure
CDA 🔍 gemcitabine, capecitabine rs2072671, rs532545 Cytidine deaminase activity Reported association with severe neutropenia
ABCB1 / SLCO1B1 🔍 multiple / methotrexate various Transporter function Exposure modulation

GWAS findings

  • Biobank Japan, 13,122 cancer patients across regimens (antimicrotubule, paclitaxel-based, docetaxel-based) — GWAS of severe neutropenia/leucopenia ⚠️ PMID:23648065 (and a follow-up, PMC7657179)
  • Platinum-based chemotherapy in NSCLC: rs13014982 (2q24.3) and rs9909179 (17p12) associated with myelosuppression risk ⚠️ PMID:25823687
  • Docetaxel-induced myelosuppression (Chinese Han cohort): SLC15A1 rs2297322, PXR/NR1I2 rs3732359, FMO3 rs2266782 ⚠️
  • CALGB 90401/60404 (Alliance) GWAS of docetaxel-induced neutropenia ⚠️

The Duffy / ACKR1 story — and why it belongs in this entry

ACKR1 (atypical chemokine receptor 1, the Duffy blood group gene) 🔍. Homozygosity for the -67T>C promoter variant (rs2814778) abolishes erythroid ACKR1 expression and produces the Duffy-null associated neutrophil count (DANC) phenotype: a genuinely lower circulating ANC with no increased infection risk, because the neutrophils are redistributed to tissue rather than absent. This is not a disease; it was historically mislabeled "benign ethnic neutropenia."

Numbers ✅ (from PMID:41158990 and Blood Advances 2023;7(3):317 ⚠️): - Normal ANC reference range, Duffy-null adults: 1200–1540/µL; Duffy non-null adults: 2000–7500/µL - ~66–67% of Black/African American individuals in the US carry the Duffy-null phenotype - Median ANC 2820/µL (Duffy-null) vs 5005/µL (non-null) among healthy Black adults ⚠️ - "Duffy null patients have ~10% lower eligibility for clinical trials due to ANC criteria alone." ✅

A 2024 Dana-Farber analysis found that more than half of studied cancer treatments would require dose reduction, delay, or discontinuation if a Duffy-null participant's ANC fell below a threshold that is normal for their phenotype ⚠️. This is a mechanism by which an ontology-adjacent measurement error becomes an undertreatment disparity, and it is the reason CTCAE v6 moved the grade boundaries.

Curation suggestion: model this as a genetic: entry with relationship_type: MODIFIER (or SUSCEPTIBILITY for the misclassification pathway), and consider a discussions: entry with kind: KNOWLEDGE_GAP on whether Duffy-null status modifies true CIN risk versus only its measurement.

Epigenetics, chromosomal abnormalities, somatic variants: not applicable to CIN itself. Relevant adjacent finding: clonal hematopoiesis (CH) — pre-existing PPM1D, TP53, DNMT3A, TET2 clones are selected for by cytotoxic therapy, and CH-derived therapy-related myeloid neoplasms occur in up to 2.3% of autologous-HSCT recipients at a median 2.6 years post-transplant, with worse outcomes than non-CH-derived tMN ⚠️ (Leukemia 2024, PMC11147764). This belongs in §11 as a long-term complication of the same cytotoxic exposure, not as a cause of CIN.


5. Environmental Information

For CIN, "environmental factor" is the drug exposure, which makes this section unusually well-defined.

Suggested environmental: entries with influences_mechanisms links (remember: target here is a bare node name, not an entity reference — the pathograph does not use <kind>#<name>):

Exposure ECTO binding environmental_effect Target node
Systemic cytotoxic chemotherapy administration 🔍 search ECTO for antineoplastic-agent exposure; may be genuinely unbindable — record the search in notes: if so TRIGGERS Cytotoxic Injury to Granulocyte Progenitors
Prior/concurrent ionizing radiation to marrow-bearing bone 🔍 ECTO ionizing radiation exposure EXACERBATES Reduced Hematopoietic Reserve
Antibiotic exposure (prophylactic fluoroquinolone) 🔍 MODULATES Gut Microbiota Disruption

A note on predicate choice: TRIGGERS and EXACERBATES are in qc_plugins.CAUSAL_PREDICATES and count toward compliance scoring. Chemotherapy genuinely triggers this, so TRIGGERS is honest here — but antibiotic prophylaxis's net effect on outcomes is contested, so MODULATES is the right non-committal predicate for that one.

Lifestyle factors: limited independent evidence. Nutritional status and oral/dental hygiene are the two with plausible mechanistic links (barrier integrity, portal of entry).

Infectious agents — as consequence, not cause. The organisms that matter in FN, worth curating with NCBITaxon bindings 🔍: - Gram-negative: Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa (the one that kills fast) - Gram-positive: coagulase-negative staphylococci (most common isolate, often line-related), Staphylococcus aureus, viridans group streptococci (mucositis-associated, can cause ARDS) - Anaerobes: Clostridioides difficile - Fungi: Candida spp., Aspergillus spp. (risk rises sharply beyond ~7 days of neutropenia) - Viral reactivation: HSV, VZV, CMV

Critically: most FN episodes are culture-negative. Only a minority yield a microbiologic diagnosis, which is the empirical anchor for the "febrile mucositis" reframing in §6.


6. Mechanism / Pathophysiology

The causal chain

  1. Cytotoxic drug is administered and distributes systemically, reaching bone marrow — leads to —
  2. DNA damage / mitotic arrest / nucleotide starvation in the marrow mitotic pool. The mitotic pool is the committed granulocytic progenitor compartment (CFU-GM, myeloblasts, promyelocytes, myelocytes) that is "sensitive to myelosuppressive chemotherapeutic drugs" ⚠️ (PMC6472781) — leads to —
  3. p53 stabilization → transcriptional induction of the BH3-only protein PUMA (BBC3) → BAX/BAK-dependent mitochondrial outer membrane permeabilization → intrinsic apoptosis of progenitors. Evidence: "PUMA is largely responsible for the apoptotic effect downstream of p53 in hematopoietic stem cells after irradiation" and "Many chemotherapeutic agents function, in part, by inducing apoptosis through p53-dependent up-regulation of proapoptotic BH3-only proteins such as PUMA" ⚠️. Puma-null mice are protected from HSPC depletion ⚠️ (Blood 2010;115:3472 and 115:4707). This step is inferred for most cytotoxics from irradiation and dyskeratosis-congenita models rather than demonstrated directly for each agent — mark directness: INDIRECT and evidence_source: MODEL_ORGANISM accordingly.
  4. Branch A (acute, reversible): progenitor apoptosis halts new granulocyte production — results in —
  5. Depletion of the marrow post-mitotic storage pool over the following days as it continues releasing without resupply — results in —
  6. Circulating neutropenia. The kinetics fall straight out of neutrophil biology: neutrophils have a circulating half-life of only 6–8 hours and are produced at 5×10¹⁰–10×10¹¹ cells/day ⚠️ (PMC2930213). A cell type with that turnover has essentially no buffer; the count follows production with only the storage-pool transit time as delay. Hence the nadir at days 10–14 for most regimens, with docetaxel notably earlier (median day 7) ⚠️ (PMC6472781) — leads to —
  7. Loss of innate first-line defense, plus, in parallel:
  8. Branch B (the mucosal arm, running concurrently): the same cytotoxic hits the gut and oral epithelium — results in — mucosal barrier injury (mucositis) — results in — loss of epithelial barrier integrity plus antibiotic- and chemotherapy-driven dysbiosis of commensal microbiota, with commensals converting to pathobionts — results in — bacterial translocation into the bloodstream and, independently, cytokine release / inflammatory response even in the absence of proven infection ⚠️ PMID:25196917 ✅. The authors of that paper propose "febrile mucositis" as a more complete frame than "febrile neutropenia," on the grounds that MBI "creates a port-de-entrée for resident micro-organisms to cause blood stream infections and contributes directly to the occurrence of fever by disrupting highly regulated host-microbe interactions." This is the best available explanation for why most FN is culture-negative.
  9. Branches A and B converge — result in — febrile neutropenia, and when uncontrolled, sepsis, organ failure, death.
  10. Branch C (long-term): cytotoxic exposure also drives HSC stress-induced premature senescence (not just apoptosis) and bone marrow niche perturbation — mesenchymal stromal injury, elevated intracellular ROS ⚠️ (PMC6114852) — leads to — impaired self-renewal and long-term hematopoietic damage, distinct from the acute nadir. The literature draws the distinction explicitly: "If hematopoietic progenitor cells are induced apoptosis and depleted by chemotherapy, acute myelosuppression occurs, but if hematopoietic stem cells undergo senescence with impaired self-renewal ability, long-term damage to the hematopoietic system occurs" ⚠️.
  11. Branch D (clinical-management feedback loop): neutropenia → dose delay/reduction → reduced relative dose intensity → potentially worse cancer outcomes (§11). The toxicity loops back onto the disease being treated.
  12. Branch E (emerging, model-organism only): neutropenia may itself be permissive for metastasis. ✅ PMID:37538353 (Russo et al., Oncoimmunology 2023): cyclophosphamide and doxorubicin — but not cisplatin — increased lung metastatic burden in mice by inducing neutropenia; anti-Ly6G neutrophil depletion reproduced the effect, and G-CSF rescue prevented it. "CIN affected the early metastatic colonization of the lung, quite likely promoting the proliferation of tumor cells extravasated into the lung at 24–72 hours." Strictly evidence_source: MODEL_ORGANISM; this is a HUMAN_MODEL_MISMATCH candidate, not a human claim.

The counter-regulatory arm (and how the drugs exploit it)

G-CSF / CSF3R signaling. G-CSF (CSF3) is "the major regulator of neutrophil production under basal conditions of hematopoiesis" and is essential for "emergency" granulopoiesis in response to bacterial infection ⚠️. Mechanism: G-CSF binds CSF3R → conformational dimerization aligns Box1/Box2 motifs → recruitment and activation of JAK1/JAK2/TYK2 → tyrosine phosphorylation → downstream STAT3 (principal axis in granulocyte-monocyte progenitors), plus MAPK/ERK, PI3K-AKT-mTOR, SRC-family kinases, NF-κB ⚠️ PMID:41950547. STAT3 both drives myeloid differentiation and provides negative feedback via SOCS3. Therapeutic G-CSF shortcuts the depleted-storage-pool problem by expanding and accelerating the surviving progenitor compartment.

CDK4/6 dependence — the trilaciclib insight. HSPCs proliferate in a CDK4/6-dependent manner; many tumors (notably SCLC, which is almost universally RB1-deficient) do not. Transient pharmacologic CDK4/6 inhibition therefore "induces reversible G1-arrest in CDK4/6-dependent cells (such as HSPCs and lymphocytes)" ⚠️, parking the marrow safely outside S-phase for the duration of chemotherapy exposure while the RB-null tumor keeps cycling into the cytotoxic. It's a beautifully asymmetric trick — like closing the storm shutters on one house while the neighbors' windows stay open, on purpose.

Ontology suggestions for the pathograph

Cell types (CL) 🔍 — verify all before binding: - neutrophil; granulocyte monocyte progenitor cell; common myeloid progenitor; hematopoietic stem cell; promyelocyte; myeloblast; mesenchymal stem cell of bone marrow (niche); intestinal epithelial cell; oral mucosa epithelial cell

Biological processes (GO) 🔍: - granulocyte differentiation; myeloid cell differentiation; neutrophil chemotaxis; intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; cell cycle arrest / G1/S transition of mitotic cell cycle; cellular senescence; hematopoietic stem cell proliferation; response to oxidative stress; cytokine-mediated signaling pathway; JAK-STAT cascade; innate immune response; defense response to bacterium

Anatomy (UBERON) 🔍: bone marrow; blood; oral mucosa; intestinal mucosa; spleen

Chemicals (CHEBI) 🔍: docetaxel, doxorubicin, cyclophosphamide, carboplatin, 5-fluorouracil, irinotecan, gemcitabine, topotecan

biological_scale tagging suggestion: step 2–3 nodes → MOLECULAR; steps 4–5 → CELLULAR; step 8 mucosal barrier → TISSUE; step 9 febrile neutropenia / sepsis → ORGANISM. Keep one value per node; if a node wants two, split it.

Molecular profiling

  • Transcriptomics: GEO holds numerous marrow and PBMC datasets under chemotherapy; also mouse 5-FU/cyclophosphamide myelosuppression series. Run just discover-datasets and just verify-datasets before committing any accession — and remember that verification proves existence, never relevance.
  • Microbiome: several strong recent datasets. "Specific gut microbiota changes heralding bloodstream infection and neutropenic fever during intensive chemotherapy" (Leukemia 2019) ⚠️; gut diversity and resistome as FN outcome biomarkers in pediatric HSCT (Sci Rep 2024) ⚠️; AML neutropenic-fever microbiome profiles (PLOS ONE 2020) ⚠️.
  • Proteomics / metabolomics / lipidomics: no established CIN-specific signature located. Record the absence rather than leaving it blank.
  • Functional genomics: DepMap and CRISPR screens for chemosensitivity determinants exist but are tumor-focused, not marrow-focused.

7. Anatomical Structures Affected

Primary organ: bone marrow (UBERON 🔍) — specifically the hematopoietically active red marrow of the pelvis, sternum, vertebrae, ribs, and proximal long bones. Involvement is bilateral, diffuse, and systemic, not focal.

Secondary organ involvement (all consequences of failed defense or shared cytotoxic injury): - Blood — the compartment where the deficit is measured - Oral cavity and oropharynx — mucositis - Gastrointestinal tract — mucositis, typhlitis (classically cecum/ascending colon) - Perianal region — cellulitis - Lung — pneumonia, invasive aspergillosis - Skin and vascular access sites — cellulitis, line infection - Any organ, via hematogenous seeding once bacteremia is established

Body systems: hematopoietic and immune (primary); gastrointestinal, integumentary, respiratory (secondary).

Tissue level: hematopoietic tissue; stratified squamous and columnar mucosal epithelium; marrow stroma/vasculature (the niche).

Cell populations targeted: the mitotic granulocytic progenitor pool preferentially; HSCs at higher/repeated doses; lymphocytes; erythroid and megakaryocytic progenitors (multilineage CIM); intestinal crypt stem cells; marrow mesenchymal stromal cells.

Subcellular (GO Cellular Component) 🔍: nucleus (DNA damage); mitochondrion (MOMP, intrinsic apoptosis); spindle/microtubule cytoskeleton (taxane target); specific and azurophil granules (neutrophil function).

Lateralization: not applicable — systemic and symmetric.


8. Temporal Development

Onset: acute and predictable, keyed to the infusion. No congenital or age-of-onset concept in the usual sense; the "onset" is pharmacologic. Age distribution mirrors who gets chemotherapy — bimodal-ish, with pediatric oncology and a large adult/geriatric mass.

Within-cycle course (the canonical arc): 1. Day 0: chemotherapy administered 2. Days 1–4: ANC often transiently normal or elevated (storage pool still shipping; steroids and stress demargination can raise it) 3. Days 5–7: descent begins 4. Days 7–14: nadir — most regimens days 10–14; docetaxel monotherapy median day 7 ⚠️; some regimens (gemcitabine, carboplatin) run later or biphasic 5. Days 14–21: recovery as surviving progenitors repopulate 6. Day 21: next cycle — assuming recovery is complete, which is the crux of every dose-delay decision

Duration: self-limited per cycle in solid-tumor chemotherapy (typically ~5–10 days of grade 3–4). In AML induction and HSCT conditioning, profound neutropenia lasts weeks, and duration is the dominant risk multiplier for invasive fungal disease.

Course pattern: episodic and cycle-locked — the clearest example of a recurrent, treatment-entrained disease course in oncology. Model as temporality: RECURRENT (or TRANSIENT per episode) rather than CHRONIC.

Progression across cycles: cumulative marrow injury means nadirs often deepen and recovery slows over successive cycles, especially with alkylators and carboplatin.

Remission: treatment-induced (G-CSF) or spontaneous with time. Complete hematologic recovery is the norm; incomplete recovery signals marrow reserve exhaustion, marrow involvement by tumor, or evolving myelodysplasia.

Critical intervention windows: - Before cycle 1 — because 59% of FN happens there ⚠️. Primary prophylaxis decided before the first dose is the single highest-yield intervention in this whole entry. - 24–72 h after chemotherapy — the pegfilgrastim/filgrastim administration window (G-CSF given too close to the cytotoxic can theoretically recruit progenitors into cycle at the worst moment). - First hour of fever onset — "door-to-antibiotic time"; empiric broad-spectrum antibiotics within 60 minutes is the standard-of-care target.


9. Inheritance and Population

Inheritance: not applicable. CIN is acquired and iatrogenic. Do not populate an inheritance: block with a Mendelian mode. The heritable component is pharmacogenomic susceptibility — model with genetic: entries typed SUSCEPTIBILITY or MODIFIER, and if you want an inheritance concept at all, the honest one is polygenic/multifactorial (HP:0010982 🔍 — verify) with a description naming the pharmacogenes. Penetrance, anticipation, germline mosaicism, consanguinity: all not applicable.

Epidemiology

Measure Value Source
Drug-induced neutropenia, US 2.4–15.4 cases per million per year ✅ PMID:35552754
Febrile neutropenia, US 7.8 cases per 1,000 patients with cancer ✅ PMID:35552754
Patients with ≥1 FN episode (intermediate-risk regimens, prospective multinational) 9% ⚠️ PMC10570161
FN by cycle 5% (cycle 1), 3% (cycles 2–3), 1% (cycles 4–6); 59% of events in cycle 1 ⚠️ PMC10570161
FN risk, high-risk regimens (TAC etc.) >20% by guideline definition ⚠️
ED visits for FN resulting in admission 94% ✅ PMID:35552754
Pediatric oncology hospitalizations due to neutropenia/FN 10.1–22.7% ✅ PMID:35552754

For dismech prevalence: records, use the structured slots — measure_type: ANNUAL_INCIDENCE for the per-million and per-1,000 figures, rate_per_100000 normalized (2.4–15.4/million → 0.24–1.54 per 100,000; 7.8/1,000 cancer patients → 780 per 100,000 cancer patients, and note the denominator is cancer patients, not general population, in population:). Never let a per-cycle FN rate and a per-patient FN rate sit in the same comparison.

Population demographics

  • Sex ratio: no strong intrinsic sex effect on CIN; observed distributions track underlying cancer epidemiology and body-composition-based dosing.
  • Age: ≥65 is the consistently replicated high-risk group; pediatric patients have the longest hospitalizations (~8 days, up to $65,000 per admission ✅).
  • Ancestry: the Duffy-null issue is the dominant population-genetics finding — ~66–67% of Black/African American individuals in the US, and high frequency in Middle Eastern populations. It affects measured ANC, trial eligibility (~10% lower ✅), and dose-modification decisions, without affecting infection risk. NUDT15 variant frequencies are highest in East Asian populations; DPYD variant spectra differ substantially by ancestry (HapB3 is European-enriched; several African-ancestry-relevant variants are under-tested by standard panels).
  • Geography: the burden distribution is a healthcare-access story, not a biology story — G-CSF availability and cost determine outcomes far more than any regional biological variation.

10. Diagnostics

Diagnosis is a lab value plus a thermometer. There's no imaging finding, no biopsy, no genetic test that makes the diagnosis.

Core tests

  • Complete blood count with differential → absolute neutrophil count. ANC = WBC × (% segmented neutrophils + % bands). LOINC 🔍: search "Neutrophils [#/volume] in Blood by Automated count" — resolve before binding.
  • Temperature measurement — oral, per the FN definition.
  • Blood cultures — at least two sets, from peripheral vein and each lumen of any central line, before antibiotics.
  • Site-directed cultures: urine, stool (if diarrhea), sputum, wound, CSF if indicated.
  • CMP, LFTs, lactate, CRP/procalcitonin (adjunctive, not diagnostic).
  • Chest imaging — CXR; high-resolution chest CT if prolonged neutropenia or fungal concern (the halo sign in invasive aspergillosis).
  • Serum galactomannan / β-D-glucan for invasive fungal surveillance in high-risk hematologic patients.
  • Bone marrow biopsy — not routine for CIN. Reserved for unexplained, prolonged, or non-recovering cytopenias where marrow involvement or a therapy-related myeloid neoplasm is the question.

Reference ranges (for a Biochemical entry with interpretation_bands)

Adult ANC, conventional: 1500–8000/µL (LLN commonly 1500). But the Duffy-null finding means a single population-wide interval is wrong for a third of some populations. If you curate reference_ranges, add a population:-stratified pair:

  • Duffy non-null adults: 2000–7500/µL ✅ PMID:41158990
  • Duffy-null adults: 1200–1540/µL ✅ PMID:41158990

and then interpretation_bands mapping ANC <1500 / <1000 / <500 / <100 to the CTCAE tiers — stating the version, since v5 and v6 disagree (§3). This is exactly the graded-category case the interpretation_bands slot exists for, and the CKD-MBD entry is the pattern to copy.

Genetic testing

Not diagnostic for CIN, but predictive and increasingly standard: - DPYD genotyping before fluoropyrimidines — mandated pre-treatment in the EU; CPIC guideline-backed - UGT1A1 before irinotecan (especially at high dose or in FOLFIRINOX) - TPMT and NUDT15 before thiopurines — CPIC guideline-backed - Pre-emptive multi-gene PGx panels ⚠️ (PMC8827955 describes implementation) - WGS/WES/CMA/karyotype/FISH/mtDNA/repeat-expansion testing: not applicable - ACKR1 (rs2814778) genotyping or Duffy phenotyping: increasingly proposed to avoid misclassifying DANC as pathologic neutropenia ⚠️ (Am J Hematol 2025, "Diagnosis of Duffy Null-Associated Neutropenia During Chemotherapy")

Clinical criteria and risk stratification

  • FN definition (IDSA): as in §3
  • MASCC Risk Index — 7 clinical factors at fever onset; score <21 = high risk. Internationally validated ⚠️
  • CISNE (Clinical Index of Stable Febrile Neutropenia) — designed for apparently stable patients; in head-to-head work CISNE-I had sensitivity 0.22 / specificity 0.91 vs MASCC low-risk sensitivity 0.95 / specificity 0.17 ⚠️ PMID:31864874. The two are answering different questions: MASCC casts a wide net, CISNE is a stricter filter for who can genuinely go home. Validated in gynecologic oncology ⚠️ PMID:34504931. A sober JCO OP commentary is titled "Risk-Stratifying Treatment Strategies for Febrile Neutropenia—Tools, Tools Everywhere, and Not a Single One That Works?" ⚠️ — worth citing for honest uncertainty.
  • Lyman model and similar multivariable models predict FN risk before cycle 1 to guide primary prophylaxis.

Differential diagnosis

Alternative Distinguishing feature
Duffy-null associated neutrophil count (DANC) Chronic, pre-treatment baseline; no infection history; ACKR1 rs2814778 homozygous — not a toxicity
Marrow infiltration by tumor Non-recovering counts; leukoerythroblastic film; biopsy
Therapy-related MDS / AML Late, progressive, dysplastic morphology, cytogenetic/molecular abnormalities
Drug-induced immune agranulocytosis (non-chemo: clozapine, methimazole, ticlopidine) Idiosyncratic, not dose-predictable, no nadir timing
Viral suppression (HIV, EBV, CMV, parvovirus B19) Serology/PCR
Sepsis-associated neutropenia Consumption rather than production failure
Autoimmune neutropenia (HP:0001904 ✅) Anti-neutrophil antibodies
Nutritional (B12, folate, copper) Macrocytosis, low levels
Hypersplenism Splenomegaly, multilineage

Screening

  • Pre-treatment CBC and risk assessment before every cycle — the operational screen
  • Pre-treatment pharmacogenomic screening for DPYD/UGT1A1/TPMT/NUDT15
  • No population-level screening program; not a newborn-screening or carrier-screening concept

11. Outcome / Prognosis

Mortality ✅ (all from PMID:35552754)

Population In-hospital mortality (neutropenia/FN)
Pediatric oncology 0.4–3.0%
Adults, solid tumors 2.6–7.0%
Adults, hematologic malignancies 7.4%

Morbidity and burden ✅

  • Average hospital LOS: ~6 days (elderly), ~8 days (children), up to 10 days (adults)
  • Per-hospitalization cost: up to $15,000 (elderly), $40,000 (adults), $65,000 (children)
  • Total annual US cost (2012): >$2 billion for adults, up to $880 million for children
  • 94% of FN emergency-department visits end in admission

Complications

Bacteremia and sepsis; septic shock; invasive fungal disease; typhlitis; ARDS (notably viridans streptococcal); prolonged hospitalization; central line loss; C. difficile colitis; and the treatment-level complication — dose delay and dose reduction.

Recovery

Complete hematologic recovery is the rule for a single cycle. The prognostically important question is whether it recovers in time for the next cycle.

The dose-intensity paradox — the most important prognostic content in this entry

Two findings sit in tension and both are real:

(a) Reduced relative dose intensity (RDI) is associated with worse cancer survival. RDI ≥85% is the conventional threshold for early breast cancer ⚠️; a systematic review and meta-analysis found RDI associated with survival in advanced solid tumors ⚠️ PMID:33973301; the early-breast-cancer/aggressive-lymphoma analysis is ⚠️ PMID:20227889. Older age, obesity, and FN itself are associated with reduced RDI ⚠️.

(b) Experiencing neutropenia is associated with better survival. A meta-analysis of 13 trials, 9,528 patients found a hazard ratio of death of 0.69 (95% CI 0.64–0.75) for patients with higher-grade neutropenia/leukopenia versus lower-grade or none ⚠️ PMID:20960191. Grade ≥3 neutropenia on day 8 of cycle 1 in mCRPC docetaxel: 1-year OS 81% vs 68% ⚠️.

These reconcile if you read neutropenia as a pharmacodynamic dosimeter — a readout that the patient actually received a biologically active exposure. As one gastric-cancer analysis puts it, "the absence of such toxicity indicates that the dosages of drugs are not pharmacologically adequate" ⚠️. But the inference has an obvious confounding hazard (patients who survive long enough to have cycle-1 toxicity, patients with better organ function, immortal-time bias in some designs). Curate this as SUPPORT + directness: INDIRECT, and put a discussions: entry with kind: KNOWLEDGE_GAP on whether the association is causal or a marker of exposure. Do not let the entry imply that inducing neutropenia is therapeutic.

Long-term

Therapy-related myeloid neoplasms: up to 2.3% of autologous-HSCT recipients at median 2.6 years; risk factors age ≥60, male sex, radiotherapy, ≥3 prior lines, graft cellularity; post-aHSCT tMN enriched for PPM1D and TP53 lesions with shorter latency and worse OS; CH-derived tMN does worse than non-CH-derived ⚠️ (Leukemia 2024, PMC11147764).

Prognostic factors

MASCC and CISNE scores; ANC nadir depth; duration of neutropenia (the strongest predictor of invasive fungal disease); documented bacteremia; hemodynamic instability; comorbidity burden; age; hematologic vs solid malignancy; time-to-antibiotic.


12. Treatment

Prophylaxis — the main event

Colony-stimulating factors (G-CSF). The current authority is ✅ PMID:41740078 — "WBC Growth Factors: ASCO Guideline Update," J Clin Oncol 2026, which replaces the 2015 version following a systematic review of RCTs and meta-analyses published September 2014 – August 2025. Core recommendation, quoted: "Prophylactic use of CSFs to reduce the risk of febrile neutropenia is warranted when the risk...is approximately 20% or higher." For regimens with <20% risk, primary prophylaxis may still be warranted based on age, medical history, or disease characteristics ⚠️. Named acceptable agents: filgrastim, pegfilgrastim, eflapegrastim, and biosimilars ✅.

Agents and suggested NCIT bindings:

Agent therapeutic_modality treatment_term therapeutic_agent NCIT/CHEBI
Filgrastim (short-acting G-CSF) PROTEIN_REPLACEMENT or PEPTIDE (judgement call; it's a recombinant cytokine) NCIT:C15986 Pharmacotherapy 🔍 NCIT filgrastim
Pegfilgrastim as above NCIT:C15986 NCIT:C123927 ✅ (Pegfilgrastim Anti-neutropenic Factor) or 🔍 the base pegfilgrastim term
Pegfilgrastim biosimilars — NCIT:C15986 NCIT:C104005 ✅ (LA-EP2006); others 🔍
Eflapegrastim (Rolvedon, FDA 2022) — NCIT:C15986 NCIT:C103856 ✅
Efbemalenograstim alfa (Ryzneuta, FDA 22 Nov 2023; China 6 May 2023) — NCIT:C15986 🔍 — a dimeric G-CSF-Fc fusion without PEGylation or polysorbate 80 ⚠️ PMID:37368138
Lipegfilgrastim — NCIT:C15986 NCIT:C101778 ✅
Pegteograstim / Empegfilgrastim / Mecapegfilgrastim — NCIT:C15986 NCIT:C128891 / C134829 / C170155 ✅
Trilaciclib (Cosela, FDA 12 Feb 2021) SMALL_MOLECULE NCIT:C15986 or NCIT:C93352 Targeted Therapy 🔍 NCIT trilaciclib

Eflapegrastim efficacy signal: severe neutropenia in cycle 1 15.8% vs 24.3% for pegfilgrastim ⚠️.

Trilaciclib. First-in-class CDK4/6 inhibitor given before chemotherapy for myeloprotection in ES-SCLC. Pivotal evidence: ✅ PMID:31504118 (Ann Oncol 2019, phase Ib/randomized II, 94 patients, trilaciclib + etoposide/carboplatin) — grade ≥3 AEs 50% vs 83.8%, improvements across neutrophil, RBC, and lymphocyte measures, comparable antitumor efficacy, no trilaciclib-related grade ≥3 AEs. Pooled phase 2 analysis ✅ PMID:34408488 (123 trilaciclib vs 119 placebo; NCT02499770, NCT03041311, NCT02514447) — myeloprotection across age groups, greater in patients ≥65, with improved QoL and on-schedule chemotherapy delivery. target_mechanisms should point at the progenitor-apoptosis node with a MODULATES/preventive framing.

Plinabulin (investigational). PROTECTIVE-2 phase 3 (n=221, TAC q21d, plinabulin 40 mg day 1 + pegfilgrastim 6 mg day 2 vs pegfilgrastim alone): grade 4 CIN prevention in cycle 1 31.5% vs 13.6%, P = .0015 ⚠️. FDA breakthrough designation Sept 2020 ⚠️. Not FDA-approved — curate as investigational and do not imply availability.

Antimicrobial prophylaxis. Fluoroquinolone prophylaxis is considered for high-risk patients with expected prolonged profound neutropenia (classically ANC <100/µL for >7 days), balanced against resistance selection and C. difficile risk. Antifungal (posaconazole) and anti-PJP (TMP-SMX) prophylaxis per risk group. This area is genuinely contested — use MODULATES-style hedging, not causal predicates.

Treatment of established febrile neutropenia

  • Empiric broad-spectrum IV antibiotics within 60 minutes, after cultures. IDSA monotherapy options: an antipseudomonal β-lactam (cefepime), a carbapenem (meropenem, imipenem-cilastatin), or piperacillin-tazobactam ⚠️ (IDSA 2010 update, Clin Infect Dis 2011;52:e56).
  • Add vancomycin, aminoglycoside, and/or fluoroquinolone for hypotension, pneumonia, suspected line infection, or known resistance ⚠️.
  • Continue "until ANC recovery is imminent" or until a specific infection dictates otherwise ⚠️.
  • Empiric antifungal therapy for persistent fever beyond 4–7 days in high-risk patients.
  • Outpatient oral management (ciprofloxacin + amoxicillin-clavulanate) for carefully selected low-risk patients — ASCO/IDSA outpatient guideline ⚠️ (JCO OP 2018).
  • Therapeutic G-CSF in established FN: guidelines generally do not recommend routine addition, reserving it for high-risk features. In AML induction specifically, a JSCO systematic review found G-CSF "significantly shortened the duration of neutropenia" but "did not correlate with infection-related mortality and did not affect disease progression/recurrence or overall survival" ⚠️ (PMC11043120). That's an important negative and belongs in the entry.
  • Granulocyte transfusion — salvage only; evidence weak.
  • Supportive care: NCIT:C15747 Supportive Care; hydration, antipyretics, source control, line removal.

Treatment-strategy content

  • Dose reduction / cycle delay — effective at reducing FN but see the RDI paradox (§11)
  • Regimen substitution to a lower-myelotoxicity option
  • Genotype-guided dosing: CPIC DPYD, UGT1A1, TPMT/NUDT15 — the personalized-medicine arm of this entry
  • Duffy-informed ANC thresholds so that DANC patients are not needlessly dose-reduced ⚠️

Adverse effects of the treatments

G-CSF: bone pain (very common), splenic rupture (rare), ARDS (rare), capillary leak; theoretical concern about stimulating CSF3R-expressing myeloid malignancies. Trilaciclib: fatigue, hypocalcemia, hypokalemia, headache, injection-site reactions. Broad-spectrum antibiotics: C. difficile, resistance selection, microbiome collapse (which loops back to §6, branch B — the treatment feeds the mechanism).


13. Prevention

Primary prevention (stop the neutropenia happening): - FN risk assessment before cycle 1, using regimen risk + patient factors (Lyman-type model) - G-CSF primary prophylaxis at the ≥20% threshold ✅ PMID:41740078 - Trilaciclib in ES-SCLC receiving platinum/etoposide or topotecan - Regimen selection favoring lower myelotoxicity where efficacy-equivalent - Pre-emptive pharmacogenomic dosing (DPYD, UGT1A1, TPMT, NUDT15) - Dental evaluation and source control before starting therapy

Secondary prevention (stop the neutropenia becoming a catastrophe): - CBC monitoring around the expected nadir - Secondary G-CSF prophylaxis after a prior FN episode or dose-limiting neutropenia - Patient education: the thermometer protocol — take a temperature for any chills or malaise, call at ≥38 °C, do not take antipyretics that mask it - Antimicrobial prophylaxis in the high-risk subset

Tertiary prevention: - Door-to-antibiotic ≤60 minutes - Risk-stratified admission via MASCC/CISNE - Central line care bundles - Antifungal surveillance in prolonged neutropenia

Immunization: inactivated influenza and COVID-19 vaccines are recommended in chemotherapy patients (ideally timed away from nadir); pneumococcal per risk. Live vaccines contraindicated. These prevent infection, not neutropenia — keep the distinction in the entry.

Behavioral / public health: hand hygiene; food-safety precautions; avoiding sick contacts and crowds during nadir; the "neutropenic diet" is not supported by evidence and has been de-implemented in most centers — worth curating explicitly as a refuted intervention with supports: REFUTE if a suitable citation is obtained.

Genetic counseling: not applicable in the reproductive sense; pharmacogenomic counseling is the analogue.


14. Other Species / Natural Disease

There is no natural disease here — CIN cannot occur without an anthropogenic exposure. But there are two genuine cross-species angles:

Veterinary iatrogenic CIN. Dogs (NCBITaxon:9615 🔍) and cats (NCBITaxon:9685 🔍) receiving veterinary chemotherapy (doxorubicin, vincristine, cyclophosphamide, lomustine, carboplatin) develop dose-limiting neutropenia with nadir timing that differs by agent — lomustine and carboplatin notably later. Canine lymphoma CHOP protocols are the highest-volume setting. This is a real clinical entity in veterinary oncology and evidence from it grades as evidence_source: MODEL_ORGANISM per dismech rules (veterinary observations in non-human mammals). Breed effects are real and mechanistically interesting: ABCB1 (MDR1) nt230(del4) in Collies and related herding breeds (VBO 🔍) causes profound sensitivity to P-glycoprotein substrates including vincristine and doxorubicin — a genuine veterinary pharmacogenomic parallel to the human DPYD story, and worth a genetic: or comparative note. Search OMIA for the ABCB1 entry to get a citable identifier.

Evolutionary conservation. Granulopoiesis, CSF3/CSF3R signaling, and p53/PUMA-mediated progenitor apoptosis are conserved across vertebrates, which is why the mouse models in §15 work at all. Orthologs: Csf3r, Trp53, Bbc3 (mouse); csf3r, tp53 (zebrafish) — NCBI Gene IDs 🔍.

Zoonotic potential / cross-species transmission: not applicable.


15. Model Organisms

Because the initiating lesion is a drug, CIN is unusually easy to model — you give the animal the drug. That makes it one of the better-supported iatrogenic conditions for animal_models: curation.

Mammalian induced models

Model Induction Phenotype recapitulation Limitations
Mouse, 5-FU myeloablation Single 150 mg/kg 5-FU i.p. → "severe neutropenia lasting from days 3 to 11 post-injection; 5-FU-treated mice achieve normal ANC levels by days 12 to 14" ⚠️ Recapitulates nadir–recovery arc with quantitatively similar kinetics; workhorse for G-CSF and myeloprotectant testing Single-dose, not cyclic; murine neutrophil biology differs (mice are lymphocyte-predominant, humans neutrophil-predominant); no tumor in most designs
Mouse, cyclophosphamide e.g. 200 mg/kg i.p. ✅ PMID:37538353 Neutropenia + the metastasis-permissive phenotype Strain-dependent susceptibility — "there are differences in susceptibility to neutropenia after cyclophosphamide treatment between inbred strains" ⚠️, which is both a limitation and a genetic-mapping opportunity
Mouse, doxorubicin 10 mg/kg i.v. ✅ PMID:37538353 Neutropenia; increased artificial lung metastasis —
Mouse, cisplatin (negative control) 10 mg/kg i.v. ✅ Does NOT produce the effect — a built-in specificity control Its value is the negative result
Anti-Ly6G antibody depletion Immunologic, not cytotoxic Isolates the neutropenia variable from all other chemotherapy effects ✅ PMID:37538353 Depletes mature neutrophils only; does not model progenitor loss or marrow injury
Mouse, cytarabine — Used in BB-10010 (MIP-1α analog) chemoprotection studies ⚠️ —
Puma-null / Trp53-null mice Genetic Protected from HSPC apoptosis after irradiation/genotoxic stress ⚠️ Establishes the mechanism (§6 step 3) but is a protection model, not a disease model

The exemplar link to curate — Russo et al. ✅ PMID:37538353 is the strongest single animal_models entry available here, because it has all four ModelMechanismLink components in one paper:

animal_models:
- name: Cyclophosphamide-induced neutropenia in Renca/LLC-bearing mice
  species: Mouse
  publication: PMID:37538353
  modeled_mechanisms:
  - target: <your neutropenia node's bare name>
    relationship: RECAPITULATES
    fidelity: MODERATE
    limitations: >-
      Single high-dose administration rather than cyclic human dosing; murine
      neutrophil biology and marrow reserve differ from human; the metastasis
      readout has no confirmed human counterpart.
    readouts:
    - name: Circulating neutrophil count
      target: <same bare name>
      direction: DECREASED
      ...

Note the anti-Ly6G arm and the G-CSF rescue arm (which prevented the metastasis phenotype) are natural PERTURBS and RESCUES links respectively — a rare chance to use three relationship values from one paper.

Other systems

  • Zebrafish — transparent larvae with fluorescent neutrophil reporters (mpx:GFP, lyz:DsRed) allow live imaging of granulopoiesis and chemotoxic depletion. Useful for screening; poor for marrow-niche biology (no long-bone marrow).
  • In vitro: human CD34+ HSPC colony-forming assays (CFU-GM) are the classic myelotoxicity readout; ex vivo bone marrow cultures; iPSC-derived hematopoietic differentiation. These are experimental_models: (non-animal), not animal_models:.
  • Bone-marrow-on-a-chip — emerging NAM (new approach methodology) for chemotherapy myelotoxicity prediction; a good experimental_models candidate with experimental_model_type set appropriately.
  • Computational: semi-mechanistic PK-PD models of the neutrophil lifecycle (Friberg-type myelosuppression models, with proliferation, transit compartments, and feedback) are widely used for dose optimization and are strong computational_models: candidates with modeled_mechanisms links to the progenitor and storage-pool nodes.

Model databases: MGI, IMPC, KOMP, IMSR, MMRRC (mouse); ZFIN (zebrafish); Cellosaurus/ATCC (lines); OMIA (veterinary).


Curation notes for the dismech entry

A few things I'd flag before anyone starts writing YAML:

  1. The MONDO gap is the first decision. No MONDO term for chemotherapy-induced neutropenia resolved via OLS. Anchor on MONDO:0001475 with skos:narrowMatch, record the gap, and consider whether this is better modeled as a kb/modules/ mechanism module than a disease entry — "cytotoxic myelosuppression" recurs across every myelosuppressive drug toxicity entry the KB will ever have, and the treatment-toxicity module family already exists for exactly this shape of thing. Run just list-modules and grep kb/modules for "myelosuppression" and "neutropenia" before deciding; a module here would let anthracycline, taxane, and platinum toxicity entries all conforms_to one chain instead of re-deriving it.
  2. Every "grade 3/4 neutropenia" number needs a CTCAE version stamp. v6 (2025) moved all four boundaries. A rate quoted from a 2019 trial and one from a 2026 trial are not the same measurement.
  3. The dose-intensity paradox needs a discussions: entry, not a confident causal claim in either direction.
  4. The Russo metastasis finding is MODEL_ORGANISM only and is a textbook HUMAN_MODEL_MISMATCH candidate.
  5. Verify every ⚠️ PMID with just fetch-reference before quoting. The exact-substring rule is unforgiving, and several of the quotes above came from search-result summaries that may have paraphrased. My own memory file on this (preverify-snippets-before-writing-yaml) exists because a blocked Write is a silent no-op.
  6. Duffy/ACKR1 deserves its own curated thread through genetic:, reference_ranges (population-stratified), and probably a notes: line in diagnostics. It's the most consequential recent development in this space and it's an equity finding as much as a biology one.

Sources

Reference Validation

Checked with linkml-reference-validator 0.2.1.

Outcome Count
References checked 37
Resolved 22
Unresolved (possible confabulation) 0
Unverifiable 15
References weighed for topical relevance 22
On topic 10
Off topic 0

22 of 37 references resolved; the rest could not be looked up either way.