Chemotherapy-induced neutropenia is a treatment-related hematologic toxicity of cytotoxic antineoplastic therapy. Myelosuppressive chemotherapy damages proliferating hematopoietic progenitors in the bone marrow, suppressing granulopoiesis and producing a fall in the circulating neutrophil count. It is the single-lineage-predominant expression of the conserved myelosuppression mechanism, and its principal danger is febrile neutropenia and infection, which drives dose delays and reductions that can compromise antitumor treatment.
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name: Chemotherapy-Induced Neutropenia
creation_date: "2026-06-24T00:00:00Z"
category: Complex
categories:
- Treatment-Related Disorder
- Hematologic Toxicity
- Adverse Drug Reaction
synonyms:
- CIN
- chemotherapy-induced neutropenia
description: >-
Chemotherapy-induced neutropenia is a treatment-related hematologic toxicity of
cytotoxic antineoplastic therapy. Myelosuppressive chemotherapy damages
proliferating hematopoietic progenitors in the bone marrow, suppressing
granulopoiesis and producing a fall in the circulating neutrophil count. It is
the single-lineage-predominant expression of the conserved myelosuppression
mechanism, and its principal danger is febrile neutropenia and infection, which
drives dose delays and reductions that can compromise antitumor treatment.
parents:
- Hematologic Disease
- Iatrogenic condition
disease_term:
preferred_term: chemotherapy-induced neutropenia
mappings:
mondo_mappings:
- term:
id: MONDO:0001475
label: neutropenia
mapping_predicate: skos:broadMatch
mapping_source: dismech curation
mapping_justification: >-
MONDO has no class for chemotherapy-induced or drug-induced neutropenia,
so this entry carries no `disease_term` binding and is cross-referenced to
the neutropenia parent instead. MONDO:0001475 is broader than this entry
in two directions at once: it is aetiology-agnostic, and it is the parent
of the whole inherited severe-congenital-neutropenia series. broadMatch is
used deliberately rather than closeMatch or narrowMatch - per CLAUDE.md
only exactMatch and narrowMatch retire a mapped concept from the curation
queue, and curating a drug toxicity does not curate the general
neutropenia concept. Rebind `disease_term` if MONDO ever creates a
drug-induced neutropenia class.
consistency:
- reference: MONDO
consistent: MISSING
notes: >-
Searched in the OAK MONDO build. `search "neutropenia"` returns
MONDO:0001475 alone; the synonym-inclusive `search "t~neutropenia"`
returns congenital, familial, cyclic and syndromic neutropenias only.
`t~chemotherapy-induced neutropenia`, `t~drug-induced neutropenia`,
`t~drug induced neutropenia`, `t~myelosuppression` and
`t~febrile neutropenia` each return nothing.
`t~chemotherapy-induced` returns five terms - alopecia, hypertension,
oral mucositis, neuropathy and the generic MONDO:0800390
chemotherapy-induced toxicity, which MONDO files under poisoning - and
no neutropenia term. `t~agranulocytosis` returns MONDO:0021758 acquired
agranulocytosis, whose MONDO definition is "Agranulocytosis that is
autoimmune in origin", so it does not cover this entry either.
pathophysiology:
- name: Host pharmacogenetic variation in cytotoxic drug inactivation
biological_scale: MOLECULAR
role: modifier
description: >-
How much active cytotoxic drug the marrow actually sees for a given
administered dose is set in part by the patient's own drug-inactivating
enzymes. Reduced-function germline alleles in the enzyme that clears a given
agent raise systemic exposure to the active species and so deepen the
progenitor injury downstream: UGT1A1 glucuronidates SN-38, the active
metabolite of irinotecan; dihydropyrimidine dehydrogenase, encoded by DPYD,
is the rate-limiting step in fluorouracil catabolism; and TPMT and NUDT15
between them catabolise thiopurines. This is the step that pre-treatment
pharmacogenomic testing acts on: it changes the starting dose rather than
the drug, and unlike every node downstream of it, it is determined by the
patient's germline rather than by the treatment.
biological_processes:
- preferred_term: xenobiotic metabolic process
term:
id: GO:0006805
label: xenobiotic metabolic process
modifier: DECREASED
genes:
- preferred_term: UGT1A1
term:
id: hgnc:12530
label: UGT1A1
- preferred_term: DPYD
term:
id: hgnc:3012
label: DPYD
- preferred_term: TPMT
term:
id: hgnc:12014
label: TPMT
- preferred_term: NUDT15
term:
id: hgnc:23063
label: NUDT15
evidence:
- reference: PMID:11990381
reference_title: "UGT1A1*28 polymorphism as a determinant of irinotecan disposition and toxicity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
screening for UGT1A1*28 polymorphism may identify patients with lower
SN-38 glucuronidation rates and greater susceptibility to irinotecan
induced gastrointestinal and bone marrow toxicity.
explanation: >-
Links a reduced-function allele to lower inactivation of the active
metabolite and to greater marrow toxicity, which is the claim this node
makes.
- reference: PMID:12209976
reference_title: "Increased risk of grade IV neutropenia after administration of 5-fluorouracil due to a dihydropyrimidine dehydrogenase deficiency: high prevalence of the IVS14+1g>a mutation."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Dihydropyrimidine dehydrogenase (DPD) is the initial and rate-limiting
enzyme in the catabolism of 5-fluorouracil (5-FU), and it is suggested
that patients with a partial deficiency of this enzyme are at risk of
developing severe 5-FU-associated toxicity.
explanation: >-
States the rate-limiting inactivation step for fluorouracil and ties
partial enzyme deficiency to severe toxicity.
- reference: PMID:41618934
reference_title: "Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for Thiopurine Dosing Based on TPMT and NUDT15 Genotypes: 2025 Update."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Thiopurine methyltransferase (TPMT) and Nudix hydrolase 15 (NUDT15) are
key enzymes that catabolize thiopurines. Decreased or no-function alleles
in TPMT and NUDT15 are associated with reduced or no enzyme activity and
predictive of pronounced adverse effects, including severe
myelosuppression, that may occur among individuals treated with standard
doses of thiopurines.
explanation: >-
Names TPMT and NUDT15 as the thiopurine-catabolising enzymes and links
reduced-function alleles to severe myelosuppression. Evidence source is
OTHER because this is a consensus dosing guideline.
downstream:
- target: Cytotoxic chemotherapy exposure and hematopoietic progenitor injury
causal_link_type: DIRECT
description: >-
Reduced inactivation raises the active-drug exposure the marrow receives
for an unchanged administered dose, amplifying the progenitor injury
rather than creating it.
- name: Cytotoxic chemotherapy exposure and hematopoietic progenitor injury
biological_scale: CELLULAR
conforms_to: "myelosuppression#Cytotoxic Insult to Proliferating Hematopoietic Progenitors"
description: >-
Myelosuppressive chemotherapy delivers cytotoxic drugs to the bone marrow,
where rapidly proliferating hematopoietic stem and progenitor cells are
preferentially injured — the conserved initiating lesion of the
myelosuppression module, here viewed through its granulocytic consequence.
role: trigger
cell_types:
- preferred_term: hematopoietic stem cell
term:
id: CL:0000037
label: hematopoietic stem cell
- preferred_term: hematopoietic progenitor cell
term:
id: CL:0008001
label: hematopoietic precursor cell
biological_processes:
- preferred_term: apoptotic process
term:
id: GO:0006915
label: apoptotic process
modifier: INCREASED
evidence:
- reference: PMID:34307165
reference_title: "Improving Outcomes of Chemotherapy: Established and Novel Options for Myeloprotection in the COVID-19 Era."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Proliferating hematopoietic stem and progenitor cells (HSPCs) in the bone
marrow are particularly susceptible to chemotherapy-induced damage.
explanation: >-
Establishes chemotherapy injury to proliferating marrow progenitors as the
initiating lesion, matching the module trigger node this disease conforms
to. Evidence source is OTHER because this is a review article.
- reference: PMID:31504118
reference_title: "Myelopreservation with the CDK4/6 inhibitor trilaciclib in patients with small-cell lung cancer receiving first-line chemotherapy: a phase Ib/randomized phase II trial."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Chemotherapy-induced damage of hematopoietic stem and progenitor cells
(HSPC) causes multi-lineage myelosuppression.
explanation: >-
A human clinical trial frames chemotherapy-induced HSPC damage as the cause
of myelosuppression, of which neutropenia is the predominant lineage here.
- reference: PMID:31988457
reference_title: "On-chip recapitulation of clinical bone marrow toxicities and patient-specific pathophysiology."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
a vascularized human BM-on-a-chip (BM chip) supports the differentiation
and maturation of multiple blood cell lineages over 4 weeks while improving
CD34+ cell maintenance, and that it recapitulates aspects of BM injury,
including myeloerythroid toxicity after clinically relevant exposures to
chemotherapeutic drugs and ionizing radiation, as well as BM recovery after
drug-induced myelosuppression
explanation: >-
New Approach Methodology (NAM) evidence (Wyss Institute human bone-marrow
organ-on-chip, the "bone marrow" example highlighted in Don Ingber's
NAMeRS 2026 case study on real-world human-chip implementation). A
vascularized human BM chip recapitulates clinically relevant
chemotherapeutic- and radiation-induced myelosuppression of proliferating
hematopoietic progenitors — and subsequent recovery — providing a
human-specific microphysiological model of the initiating marrow lesion of
chemotherapy-induced neutropenia without animal testing.
downstream:
- target: Cell-cycle-dependent vulnerability of proliferating progenitors
causal_link_type: DIRECT
description: >-
Cytotoxic agents act on cells traversing S phase and mitosis, so the injury
is conditional on the progenitor pool actively cycling.
- name: Cell-cycle-dependent vulnerability of proliferating progenitors
description: >-
Marrow toxicity is not simply a matter of drug reaching the bone marrow: it
depends on the haematopoietic stem and progenitor pool being in active cell
cycle when the cytotoxic agent arrives. That cell-cycle dependence is what
makes the marrow a preferential target, and it is also a pharmacologically
addressable step - holding progenitors in G1 for the duration of drug
exposure protects them without changing the drug or its dose.
role: mechanism
biological_scale: CELLULAR
cell_types:
- preferred_term: hematopoietic stem cell
term:
id: CL:0000037
label: hematopoietic stem cell
- preferred_term: hematopoietic progenitor cell
term:
id: CL:0008001
label: hematopoietic precursor cell
biological_processes:
- preferred_term: cell cycle
term:
id: GO:0007049
label: cell cycle
evidence:
- reference: PMID:33861388
reference_title: "Trilaciclib: First Approval."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
trilaciclib induces a transient, reversible G1 cell cycle arrest of
proliferating haematopoietic stem and progenitor cells in bone marrow,
thus protecting them from damage during chemotherapy
explanation: >-
Pharmacological demonstration that the vulnerability is cell-cycle
dependent: removing progenitors from cycle protects them from an otherwise
unchanged chemotherapy exposure, which is the evidence that this is a
distinct mechanistic step rather than a restatement of the trigger.
downstream:
- target: Bone marrow granulopoietic suppression
causal_link_type: DIRECT
description: >-
Loss of cycling progenitors depletes the granulocytic pool the marrow can
produce.
- name: Bone marrow granulopoietic suppression
biological_scale: TISSUE
conforms_to: "myelosuppression#Bone Marrow Hematopoietic Suppression"
description: >-
Loss of functional progenitors suppresses bone marrow hematopoietic output.
In this entry the suppression is viewed through its effect on granulopoiesis,
reducing the marrow's capacity to replace circulating neutrophils.
role: central_effector
cell_types:
- preferred_term: hematopoietic stem cell
term:
id: CL:0000037
label: hematopoietic stem cell
biological_processes:
- preferred_term: hemopoiesis
term:
id: GO:0030097
label: hemopoiesis
modifier: DECREASED
evidence:
- reference: PMID:40057216
reference_title: "Marrow adipogenic lineage precursors (MALPs) facilitate bone marrow recovery after chemotherapy."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
The resultant bone marrow suppression is a major dose-limiting side effect.
explanation: >-
Identifies marrow suppression as the dose-limiting consequence of
chemotherapy hematopoietic toxicity, matching the module central-effector
node. Evidence source is MODEL_ORGANISM (mouse 5-fluorouracil study).
downstream:
- target: Peripheral neutropenia
description: >-
Suppressed granulopoiesis lowers the circulating neutrophil count.
- name: Peripheral neutropenia
biological_scale: ORGANISM
conforms_to: "myelosuppression#Multilineage Peripheral Cytopenias"
description: >-
Reduced marrow output lowers the circulating neutrophil count. This node
specializes the module's multilineage-cytopenia effector to the neutrophil
lineage, the predominant and most clinically consequential cytopenia for many
regimens.
role: effector
cell_types:
- preferred_term: neutrophil
term:
id: CL:0000775
label: neutrophil
biological_processes:
- preferred_term: myeloid cell homeostasis
term:
id: GO:0002262
label: myeloid cell homeostasis
modifier: DECREASED
evidence:
- reference: PMID:34307165
reference_title: "Improving Outcomes of Chemotherapy: Established and Novel Options for Myeloprotection in the COVID-19 Era."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
one of the most common side effects of chemotherapy is myelosuppression,
which typically manifests as neutropenia, anemia, thrombocytopenia, and/or
lymphopenia
explanation: >-
Lists neutropenia among the manifestations of chemotherapy-induced
myelosuppression, the lineage specialized in this node. Evidence source is
OTHER because this is a review article.
downstream:
- target: Febrile neutropenia and infection susceptibility
description: >-
A low neutrophil count raises the risk of infection and febrile
neutropenia.
- target: Neutropenia
causal_link_type: DIRECT
description: >-
The fall in circulating neutrophils is what is measured as the defining
laboratory abnormality of this toxicity.
- name: Febrile neutropenia and infection susceptibility
biological_scale: ORGANISM
conforms_to: "myelosuppression#Cytopenia-Related Clinical Complications"
description: >-
Neutropenia impairs host defense, raising the risk of infection and febrile
neutropenia — the principal driver of morbidity and mortality and the reason
chemotherapy doses are delayed or reduced.
role: consequence
cell_types:
- preferred_term: neutrophil
term:
id: CL:0000775
label: neutrophil
biological_processes:
- preferred_term: leukocyte mediated immunity
term:
id: GO:0002443
label: leukocyte mediated immunity
modifier: DECREASED
evidence:
- reference: PMID:21095116
reference_title: "2010 update of EORTC guidelines for the use of granulocyte-colony stimulating factor to reduce the incidence of chemotherapy-induced febrile neutropenia in adult patients with lymphoproliferative disorders and solid tumours."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Chemotherapy-induced neutropenia is a major risk factor for
infection-related morbidity and mortality and also a significant
dose-limiting toxicity in cancer treatment.
explanation: >-
Establishes neutropenia as the driver of infection-related morbidity and as
a dose-limiting toxicity, the consequence captured by the module node.
Evidence source is OTHER because this is a guideline document.
- reference: PMID:38587388
reference_title: "The impact of myelosuppression on quality of life of patients treated with chemotherapy."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Neutropenia increases infection risk, and anemia frequently results in
debilitating fatigue.
explanation: >-
Maps neutropenia to its characteristic infection complication. Evidence
source is OTHER because this is a review article.
downstream:
- target: Recurrent infections
causal_link_type: DIRECT
description: >-
Impaired neutrophil-mediated host defence is what presents clinically as
increased susceptibility to infection.
phenotypes:
- name: Neutropenia
description: >-
Reduced circulating neutrophil count, the defining laboratory abnormality of
this toxicity.
phenotype_term:
preferred_term: Neutropenia
term:
id: HP:0001875
label: Decreased total neutrophil count
evidence:
- reference: PMID:34307165
reference_title: "Improving Outcomes of Chemotherapy: Established and Novel Options for Myeloprotection in the COVID-19 Era."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
one of the most common side effects of chemotherapy is myelosuppression,
which typically manifests as neutropenia, anemia, thrombocytopenia, and/or
lymphopenia
explanation: >-
Names neutropenia among the defining manifestations of chemotherapy-induced
myelosuppression. Evidence source is OTHER because this is a review.
- name: Recurrent infections
description: >-
Increased susceptibility to infection, including febrile neutropenia,
downstream of the low neutrophil count.
phenotype_term:
preferred_term: Increased susceptibility to infection
term:
id: HP:0002719
label: Recurrent infections
evidence:
- reference: PMID:21095116
reference_title: "2010 update of EORTC guidelines for the use of granulocyte-colony stimulating factor to reduce the incidence of chemotherapy-induced febrile neutropenia in adult patients with lymphoproliferative disorders and solid tumours."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Chemotherapy-induced neutropenia is a major risk factor for
infection-related morbidity and mortality and also a significant
dose-limiting toxicity in cancer treatment.
explanation: >-
Establishes infection-related morbidity and mortality as the principal
complication of chemotherapy-induced neutropenia. Evidence source is OTHER
because this is a guideline document.
genetic:
- name: UGT1A1 pharmacogenomic susceptibility
gene_term:
preferred_term: UGT1A1
term:
id: hgnc:12530
label: UGT1A1
association: Reduced-function UGT1A1 variants increase irinotecan-associated neutropenia risk
relationship_type: RISK_FACTOR
variant_origin: GERMLINE
notes: >-
Reduced UGT1A1 activity limits SN-38 glucuronidation after irinotecan
exposure, increasing bone marrow toxicity including neutropenia. Two alleles
carry most of the reported signal: *28, an extra TA repeat in the UGT1A1
promoter TATA sequence, and *6, whose association with severe
irinotecan-induced neutropenia has been quantified mainly in Chinese and
Japanese study populations.
variants:
- name: UGT1A1*28
description: >-
Promoter repeat allele - an additional TA repeat in the TATA sequence -
associated with lower SN-38 glucuronidation and increased irinotecan
myelotoxicity susceptibility.
- name: UGT1A1*6
description: >-
Allele associated with an increased risk of severe irinotecan-induced
neutropenia in a meta-analysis of twelve studies.
evidence:
- reference: PMID:11990381
reference_title: "UGT1A1*28 polymorphism as a determinant of irinotecan disposition and toxicity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
screening for UGT1A1*28 polymorphism may identify patients with lower
SN-38 glucuronidation rates and greater susceptibility to irinotecan
induced gastrointestinal and bone marrow toxicity.
explanation: >-
Human pharmacokinetic evidence links UGT1A1*28 to greater irinotecan bone
marrow toxicity, of which neutropenia is the principal manifestation.
- reference: PMID:28585035
reference_title: "UGT1A1*6 polymorphisms are correlated with irinotecan-induced neutropenia: a systematic review and meta-analysis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Patients with recessive models (GA + AA vs. GG) of UGT1A1*6 showed an increased risk (OR 2.03, 95% CI 1.54-2.68; RD = 0.11, P < 0.001)."
explanation: >-
Quantifies the UGT1A1*6 association with severe irinotecan-induced
neutropenia across twelve studies, the neutrophil-specific endpoint this
entry is about.
- name: DPYD pharmacogenomic susceptibility
gene_term:
preferred_term: DPYD
term:
id: hgnc:3012
label: DPYD
association: Reduced-function DPYD variants increase fluoropyrimidine-associated neutropenia risk
relationship_type: RISK_FACTOR
variant_origin: GERMLINE
notes: >-
DPYD encodes dihydropyrimidine dehydrogenase, the rate-limiting enzyme of
fluorouracil catabolism. Note that the enzyme phenotype and the genotype are
separately measured in the founding series: the 3.4-fold excess of grade IV
neutropenia is reported for patients with partial DPD enzyme deficiency,
while the IVS14+1G>A allele accounts for half of the genotyped patients who
had grade IV neutropenia. The two are related but not the same measurement.
variants:
- name: DPYD IVS14+1G>A (DPYD*2A, c.1905+1G>A)
description: >-
Splice-site allele carried, in heterozygous or homozygous form, by 50% of
the grade IV neutropenia patients genotyped in the founding series.
evidence:
- reference: PMID:12209976
reference_title: "Increased risk of grade IV neutropenia after administration of 5-fluorouracil due to a dihydropyrimidine dehydrogenase deficiency: high prevalence of the IVS14+1g>a mutation."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Patients with partial DPD deficiency appeared to have a 3.4-fold higher
risk of developing grade IV neutropenia than patients with normal DPD
activity.
explanation: >-
Quantifies the neutrophil-specific excess risk associated with reduced DPD
activity, the enzyme DPYD encodes.
- reference: PMID:12209976
reference_title: "Increased risk of grade IV neutropenia after administration of 5-fluorouracil due to a dihydropyrimidine dehydrogenase deficiency: high prevalence of the IVS14+1g>a mutation."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Analysis of the DPYD gene of patients suffering from grade IV neutropenia
for the presence of the IVS14+1G>A mutation showed that 50% of the
patients investigated were heterozygous or homozygous for the IVS14+1G>A
mutation.
explanation: >-
Ties the enzyme deficiency to a specific DPYD allele in the patients who
developed grade IV neutropenia.
- reference: PMID:30348537
reference_title: "DPYD genotype-guided dose individualisation of fluoropyrimidine therapy in patients with cancer: a prospective safety analysis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Prospective DPYD genotyping was feasible in routine clinical practice, and
DPYD genotype-based dose reductions improved patient safety of
fluoropyrimidine treatment.
explanation: >-
Prospective multicentre evidence that acting on the genotype changes the
toxicity outcome. The endpoint is overall severe fluoropyrimidine toxicity
rather than neutropenia alone, so it supports the actionability of the
locus rather than the neutrophil-specific effect size.
- name: TPMT pharmacogenomic susceptibility
gene_term:
preferred_term: TPMT
term:
id: hgnc:12014
label: TPMT
association: Reduced-function TPMT alleles increase thiopurine-associated myelosuppression risk
relationship_type: RISK_FACTOR
variant_origin: GERMLINE
notes: >-
TPMT methylates thiopurines to inactive metabolites, so reduced-function
alleles leave more drug available for conversion to active thioguanine
nucleotides. Within oncology the relevant agents are mercaptopurine, the
backbone of acute lymphoblastic leukaemia maintenance regimens, and
thioguanine; azathioprine, the third thiopurine covered by the same
guideline, is an immunosuppressant rather than an antineoplastic and is out
of scope for this entry.
evidence:
- reference: PMID:41618934
reference_title: "Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for Thiopurine Dosing Based on TPMT and NUDT15 Genotypes: 2025 Update."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Thiopurine methyltransferase (TPMT) and Nudix hydrolase 15 (NUDT15) are
key enzymes that catabolize thiopurines. Decreased or no-function alleles
in TPMT and NUDT15 are associated with reduced or no enzyme activity and
predictive of pronounced adverse effects, including severe
myelosuppression, that may occur among individuals treated with standard
doses of thiopurines.
explanation: >-
The consensus dosing guideline states the TPMT mechanism and the
myelosuppression consequence. Evidence source is OTHER because this is a
guideline rather than a primary study.
- name: NUDT15 pharmacogenomic susceptibility
gene_term:
preferred_term: NUDT15
term:
id: hgnc:23063
label: NUDT15
association: Reduced-function NUDT15 alleles increase thiopurine-associated neutropenia risk
relationship_type: RISK_FACTOR
variant_origin: GERMLINE
notes: >-
NUDT15 is one of the two enzymes that catabolise thiopurines, and the
c.415C>T (p.Arg139Cys) allele carries most of the thiopurine-toxicity signal
in East Asian populations, where TPMT variants are less frequent than in
people of European descent while thiopurine-induced leukopenia is more
common. The effect size is larger for leukopenia than for neutropenia in the
leukaemia meta-analysis below, so the two endpoints should not be quoted
interchangeably.
variants:
- name: NUDT15 c.415C>T (p.Arg139Cys)
description: >-
The allele carrying most of the reported thiopurine myelosuppression
signal in acute lymphoblastic leukaemia cohorts.
evidence:
- reference: PMID:37794799
reference_title: "Association of NUDT15 gene polymorphism with adverse reaction, treatment efficacy, and dose of 6-mercaptopurine in patients with acute lymphoblastic leukemia: a systematic review and meta-analysis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "We found 9-fold higher risk of 6-MP induced leukopenia (odds ratio [OR] =9.00, 95% confidence interval [CI]: 3.73-21.74) and 2.5-fold higher risk of 6-MP-induced neutropenia (OR=2.52, 95% CI: 1.72-3.69) for NUDT15 c.415C>T variant carriers in the dominant model."
explanation: >-
Quantifies the neutropenia-specific risk in patients receiving
mercaptopurine as leukaemia chemotherapy, which is the exposure and the
endpoint this entry is about.
- reference: PMID:25108385
reference_title: A common missense variant in NUDT15 confers susceptibility to thiopurine-induced leukopenia.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Despite a lower frequency of TPMT mutations in Asians, the incidence of thiopurine-induced leukopenia is higher in Asians than in individuals of European descent."
explanation: >-
Supports the population asymmetry stated in the notes, which is why NUDT15
rather than TPMT carries most of the signal in East Asian cohorts.
- reference: PMID:25108385
reference_title: A common missense variant in NUDT15 confers susceptibility to thiopurine-induced leukopenia.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "We identified a nonsynonymous SNP in NUDT15 (encoding p.Arg139Cys) that was strongly associated with thiopurine-induced early leukopenia (odds ratio (OR) = 35.6; P(combined) = 4.88 × 10(-94))."
explanation: >-
The founding association report for the allele, with a leukopenia rather
than a neutropenia endpoint.
- reference: PMID:41618934
reference_title: "Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for Thiopurine Dosing Based on TPMT and NUDT15 Genotypes: 2025 Update."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Thiopurine methyltransferase (TPMT) and Nudix hydrolase 15 (NUDT15) are
key enzymes that catabolize thiopurines. Decreased or no-function alleles
in TPMT and NUDT15 are associated with reduced or no enzyme activity and
predictive of pronounced adverse effects, including severe
myelosuppression, that may occur among individuals treated with standard
doses of thiopurines.
explanation: >-
The consensus dosing guideline states the NUDT15 mechanism and the
myelosuppression consequence. Evidence source is OTHER because this is a
guideline rather than a primary study.
treatments:
- name: Trilaciclib
description: >-
A short-acting intravenous CDK4/6 inhibitor given before chemotherapy rather
than as treatment for established neutropenia. It holds haematopoietic stem
and progenitor cells in a transient, reversible G1 arrest for the duration of
cytotoxic exposure, so the marrow is protected without altering the
chemotherapy regimen. Approved in the USA in February 2021 for extensive-stage
small cell lung cancer receiving platinum/etoposide or topotecan. This is
prophylactic myeloprotection, mechanistically distinct from G-CSF, which
accelerates recovery after the injury has occurred.
therapeutic_modality: SMALL_MOLECULE
treatment_term:
preferred_term: Pharmacotherapy
term:
id: NCIT:C15986
label: Pharmacotherapy
target_mechanisms:
- target: Cell-cycle-dependent vulnerability of proliferating progenitors
treatment_effect: INHIBITS
description: >-
CDK4/6 inhibition arrests progenitors in G1, removing them from the cycling
state on which cytotoxic injury depends.
evidence:
- reference: PMID:33861388
reference_title: "Trilaciclib: First Approval."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
In February 2021, trilaciclib received its first approval in the USA to
decrease the incidence of chemotherapy-induced myelosuppression in adult
patients when administered prior to a platinum/etoposide-containing regimen
or topotecan-containing regimen for extensive-stage small cell lung cancer
(ES-SCLC).
explanation: >-
Establishes the approved indication and the pre-chemotherapy timing that
distinguishes myeloprotection from post-hoc rescue.
- reference: PMID:31504118
reference_title: "Myelopreservation with the CDK4/6 inhibitor trilaciclib in patients with small-cell lung cancer receiving first-line chemotherapy: a phase Ib/randomized phase II trial."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Trilaciclib clinically and significantly reduced both the duration of
severe neutropenia (DSN) in cycle 1, a surrogate for febrile neutropenia
(FN) and infections, and the occurrence of severe neutropenia (SN)
explanation: >-
The pivotal randomized evidence for the neutrophil endpoint this entry is
about, reporting reductions in both the duration and the occurrence of
severe neutropenia. This is the primary trial underlying the approval that
PMID:33861388 reports.
- reference: PMID:31504118
reference_title: "Myelopreservation with the CDK4/6 inhibitor trilaciclib in patients with small-cell lung cancer receiving first-line chemotherapy: a phase Ib/randomized phase II trial."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
For those patients in the trilaciclib group who did experience SN, the
duration of those events was shorter compared with placebo (median
duration of 3 versus 8 days).
explanation: >-
Quantifies the residual benefit in patients who still developed severe
neutropenia, showing the effect is a shift in severity rather than a
binary prevention.
- reference: PMID:34408488
reference_title: "Myeloprotective Effects of Trilaciclib Among Patients with Small Cell Lung Cancer at Increased Risk of Chemotherapy-Induced Myelosuppression: Pooled Results from Three Phase 2, Randomized, Double-Blind, Placebo-Controlled Studies."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Across FN risk factors and categories, trilaciclib had beneficial effects
on neutrophil-related endpoints vs placebo, with greater effects observed
in patients at higher risk of FN.
explanation: >-
Pooled placebo-controlled phase 2 evidence for the neutrophil-specific
benefit, which is the endpoint this entry is about.
notes: >-
therapeutic_agent is deliberately omitted: no verified CHEBI or NCIT CURIE
for trilaciclib was available from the local caches, and the ontology service
was unreachable at curation time. A guessed identifier would be worse than
none; this should be bound once the term can be checked.
- name: Granulocyte colony-stimulating factor (G-CSF)
target_mechanisms:
- target: Bone marrow granulopoietic suppression
treatment_effect: RESTORES
description: >-
G-CSF drives granulocytic differentiation and release from the surviving
progenitor pool, shortening the depth and duration of the neutrophil nadir
after the marrow injury has already occurred.
description: >-
Prophylactic or therapeutic G-CSF (filgrastim, lenograstim, pegfilgrastim)
reduces the incidence and duration of chemotherapy-induced neutropenia and
febrile neutropenia.
treatment_term:
preferred_term: Pharmacotherapy
term:
id: NCIT:C15986
label: Pharmacotherapy
therapeutic_agent:
- preferred_term: filgrastim
term:
id: NCIT:C1474
label: Filgrastim
evidence:
- reference: PMID:21095116
reference_title: "2010 update of EORTC guidelines for the use of granulocyte-colony stimulating factor to reduce the incidence of chemotherapy-induced febrile neutropenia in adult patients with lymphoproliferative disorders and solid tumours."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
prophylactic treatment with granulocyte-colony stimulating factors
(G-CSFs), such as filgrastim (including approved biosimilars), lenograstim
or pegfilgrastim is available to reduce the risk of chemotherapy-induced
neutropenia
explanation: >-
The EORTC guideline identifies prophylactic G-CSF as the standard
intervention to reduce chemotherapy-induced neutropenia. Evidence source is
OTHER because this is a guideline document.
notes: >-
This entry has no gene-defined subtypes, and it should not acquire any. It
models an acquired drug toxicity: the lesion is cytotoxic injury to cycling
marrow progenitors, and the host genetics that matter are the
drug-inactivating enzymes that set how much active drug the progenitors see.
Those are carried in genetic[] as RISK_FACTOR relationships wired to the
pharmacogenetic node, which is the accurate claim - a reduced-function
UGT1A1, DPYD, TPMT or NUDT15 allele does nothing without the drug, and causes
no disease in an unexposed carrier.
The inherited severe congenital neutropenia syndromes are a different kind of
disease and belong in their own entries. Each is a germline Mendelian
disorder of granulopoiesis present from birth and independent of any drug;
dismech already curates one of them in full as
Severe_Congenital_Neutropenia_1_Autosomal_Dominant, anchored on MONDO:0042490
and modelled as a sibling of the others rather than as a subtype of anything
acquired. Stubs exist for WHIM syndrome 1 and for CSF3R-deficiency severe
congenital neutropenia. MONDO:1060165 ELANE-related neutropenia is the parent
of MONDO:0042490, so the ELANE arm is covered by that entry.
Those syndromes touch this entry only through the ontology. Every one of
ELANE-related neutropenia, Kostmann syndrome, WHIM syndrome 1, X-linked
severe congenital neutropenia, the CSF3R, CXCR2 and JAGN1 recessive forms,
congenital neutropenia-myelofibrosis-nephromegaly syndrome, severe congenital
neutropenia 2, 8, 9 and 12, and poikiloderma with neutropenia is an is_a
descendant of MONDO:0001475 neutropenia. That term is not this entry's
identity and is held as a broadMatch cross-reference rather than as a
`disease_term` binding: binding it would assert identity with the general
neutropenia class, which makes every inherited neutropenia a descendant of a
drug toxicity. See mappings.mondo_mappings for the searches establishing that
MONDO has no drug-induced neutropenia class to bind instead.
The GeneReviews baseline check matches the chapter titled ELANE-Related
Neutropenia against this entry on the word "neutropenia". That chapter is
about the inherited ELANE disease, not about chemotherapy toxicity, so it is
deliberately neither cited nor tagged here. There is no GeneReviews chapter
for chemotherapy-induced neutropenia, which is expected: GeneReviews covers
heritable disorders.
Deep research results are used as seeds for research; they do not undergo the same validation as the main records and may contain errors. How we use deep research.
Prepared 2026-08-31 for dismech knowledge-base curation.
A framing note before the data: this entry is not a disease in the "broken gene → broken protein → sick person" sense. It's an iatrogenic injury — we deliberately poison a fast-dividing tissue to kill another fast-dividing tissue, and the bone marrow is collateral. So several template sections (causal genes, inheritance, natural disease in other species) don't map cleanly, and I've said so plainly rather than manufacturing content. Where the section does have a real analogue — germline pharmacogenomics standing in for "causal genes," cytotoxic drug class standing in for "environmental exposure" — I've curated that instead and flagged the substitution.
Evidence-verification status, stated up front: PMIDs marked ✅ below were retrieved and read this session (via NCBI E-utilities or PMC). PMIDs marked ⚠️ are derived from PubMed URLs and search-result summaries and were not opened directly — treat every quoted string from those as a lead, not a snippet. Before any of these become snippet: values in a dismech entry, run just fetch-reference PMID:NNNNNNNN and match the exact substring against the cache. Ontology IDs marked ✅ were resolved live against the EBI OLS4 API this session; ones marked 🔍 need a local OAK lookup before binding.
Chemotherapy-induced neutropenia is the drop in circulating neutrophils that follows cytotoxic anticancer therapy, because the drugs that hit dividing cancer cells also hit the dividing granulocyte precursors in marrow. The marrow is basically a factory running three shifts — stem cells, a dividing (mitotic) pool, and a maturing (post-mitotic) storage pool — and chemotherapy shuts down the middle shift. The warehouse keeps shipping for a few days, then runs dry. That lag is the nadir.
Its clinically dangerous form is febrile neutropenia (FN): fever arriving while the neutrophil count is on the floor, which is a medical emergency because the usual sign of infection — pus, inflammation, a visible abscess — requires neutrophils to make, and there aren't any. The fever is often the only sign.
| Resource | ID | Label | Status |
|---|---|---|---|
| MeSH | D064146 | Chemotherapy-Induced Febrile Neutropenia | ✅ resolved via OLS |
| MedGen | C3658261 | Febrile Neutropenia, Chemotherapy-Induced | ✅ |
| OMIT | 0028359 | Chemotherapy-Induced Febrile Neutropenia | ✅ |
| MONDO | MONDO:0001475 | Neutropenia (parent concept) | ✅ |
| NCIT | NCIT:C80520 | Neutropenia — "A decrease in the number of neutrophils in the peripheral blood." | ✅ |
| NCIT | NCIT:C35665 | Febrile Neutropenia | ✅ |
| NCIT | NCIT:C143481 | Febrile Neutropenia, CTCAE | ✅ |
| NCIT | NCIT:C59479 / C59715 / C59951 | Grade 3 / 4 / 5 Febrile Neutropenia, CTCAE | ✅ |
| HP | HP:0001875 | Decreased total neutrophil count | ✅ |
| HP | HP:0410255 | Transiently decreased total neutrophil count | ✅ |
| HP | HP:0012235 | Drug-induced agranulocytosis — "<50 granulocytes per microliter" caused by drug exposure | ✅ |
| ICD-10-CM | D70.1 Agranulocytosis secondary to cancer chemotherapy; D70.9 Neutropenia unspecified; T45.1X5A adverse effect of antineoplastic drugs | 🔍 verify in icd10cm adapter |
|
| ICD-11 | 3A20.0 / 3A20 (drug-induced neutropenia branch) | 🔍 verify | |
| OMIM / Orphanet | Not applicable — acquired iatrogenic condition, no OMIM or ORPHA disorder entry | — |
⚠️ MONDO gap — important curation finding. A direct OLS query for MONDO terms matching "chemotherapy-induced neutropenia," "drug-induced neutropenia," or "febrile neutropenia" returned nothing. MONDO carries MONDO:0001475 (Neutropenia) plus a long tail of congenital neutropenia syndromes, but no drug-induced or chemotherapy-induced child that I could resolve. Recommended handling in dismech: anchor disease_term on MONDO:0001475 with a mappings.mondo_mappings entry using mapping_predicate: skos:narrowMatch, per the design-decisions rule for promoted concepts lacking their own term, and record the gap in notes:. Do not invent a MONDO ID here — my own memory note (never guess MONDO ids) exists precisely because guessed IDs resolve to real-but-wrong concepts.
Chemotherapy-induced neutropenia; CIN; chemotherapy-induced myelosuppression (broader — includes anemia and thrombocytopenia); myelotoxicity; neutropenic fever; febrile neutropenia; FN; chemotherapy-induced febrile neutropenia; drug-induced agranulocytosis (when profound); bone marrow suppression.
Note the near-synonym trap: "chemotherapy-induced myelosuppression" (CIM) is the multilineage parent, of which CIN is the neutrophil lineage. Trilaciclib's label and the trilaciclib literature use CIM, not CIN. Keep the two distinguishable in the entry.
Both. Individual-patient EHR/claims data drive the burden and incidence figures (Boccia et al. pooled US claims and hospital datasets ✅ PMID:35552754); aggregated trial and registry data drive the regimen-specific risk estimates and the guideline thresholds.
The cause is the drug. This is a dose-dependent, largely predictable, on-target-off-tissue toxicity, and the "genetic etiology" here is host pharmacogenomics modulating exposure, not a disease gene.
Highest-risk agent classes (mechanistic grouping):
| Class | Exemplars | Mechanism of marrow injury |
|---|---|---|
| Taxanes | docetaxel, paclitaxel | microtubule stabilization → mitotic arrest → apoptosis of dividing progenitors |
| Anthracyclines | doxorubicin, epirubicin | topoisomerase II poisoning + DNA intercalation + ROS |
| Alkylators | cyclophosphamide, ifosfamide, bendamustine | DNA crosslinking; hits quiescent HSC as well as cycling progenitors |
| Platinums | carboplatin (> cisplatin) | DNA adducts; carboplatin notably myelosuppressive, cisplatin comparatively not |
| Topo-I inhibitors | topotecan, irinotecan | topoisomerase I trapping → replication-fork collapse |
| Antimetabolites | 5-FU, gemcitabine, methotrexate, cytarabine | S-phase nucleotide starvation / fraudulent nucleotide incorporation |
| ADCs | sacituzumab govitecan, trastuzumab deruxtecan | payload (SN-38, DXd) released systemically reaches marrow |
High-FN-risk (>20%) regimen exemplars documented in the literature: TAC (docetaxel/doxorubicin/cyclophosphamide) is consistently classified >20% ⚠️; TC (docetaxel 75 + cyclophosphamide 600 q3w) has reported FN rates spanning 4–69% across studies, and a meta-analysis supports G-CSF primary prophylaxis for it ⚠️ PMID:26337685; TPF (docetaxel/cisplatin/5-FU) for head and neck ⚠️; dose-dense AC-T; R-CHOP in older lymphoma patients; topotecan and platinum-etoposide in SCLC.
Treatment-related (dominant): - Regimen myelotoxicity and dose intensity — the single largest determinant - Prior chemotherapy or radiotherapy (especially pelvic/vertebral fields — marrow reserve is a bank account you can overdraw) - Concurrent radiotherapy - Cycle number: FN clusters in cycle 1 — a prospective multinational MASCC study of 364 patients across 1,601 cycles found FN in 5% of first cycles, 3% in cycles 2–3, 1% in cycles 4–6, with 9% of patients having ≥1 FN episode and 59% of all FN events occurring in cycle 1 ⚠️ (PMC10570161). That front-loading is why primary prophylaxis beats secondary.
Patient-related: - Age ≥65 — the most consistently replicated host risk factor - Low baseline ANC / low pretreatment absolute lymphocyte count / low pretreatment monocyte count ⚠️ (PMC5922370) - Poor performance status, low albumin, low BMI (or, in some analyses, obesity via dosing practice) - Bone marrow involvement by tumor - Renal or hepatic impairment (reduced drug clearance → higher exposure) - Comorbidities: cardiovascular, hepatic, diabetes - Advanced disease stage; hematologic malignancy > solid tumor - Open wounds / active infection
Genetic risk factors — see §4, but in brief: DPYD (fluoropyrimidines), UGT1A1 (irinotecan), TPMT and NUDT15 (thiopurines), CYP2B6 (cyclophosphamide), CDA (gemcitabine/capecitabine), plus GWAS hits at SLC15A1, NR1I2(PXR), FMO3, and platinum loci at 2q24.3 and 17p12.
Environmental / lifestyle: malnutrition; poor dentition and periodontal disease (a portal of entry); crowded or high-exposure living or occupational settings; no strong evidence that smoking or alcohol independently drive CIN incidence, though both correlate with comorbidity burden.
DPYD, UGT1A1*1/*1, wild-type TPMT/NUDT15 are effectively protective alleles for the corresponding drugsThis condition is almost the platonic case of GxE: the "environment" is a precisely dosed, precisely timed chemical exposure, and the genotype sets the exposure–response curve. A DPYD poor metabolizer given standard 5-FU experiences a pharmacokinetic exposure several-fold higher than intended; the same genotype with no fluoropyrimidine exposure is clinically silent. CPIC and DPWG both publish genotype-directed dose reductions, and DPYD/UGT1A1 pre-emptive genotyping is now implemented in multiple health systems ⚠️ (PMC8827955, PMC9262778).
The defining feature of CIN's phenotype list is what's missing: neutropenia is largely asymptomatic until it isn't. Without neutrophils you cannot mount the local inflammatory response that produces the usual signs of infection, so a patient can go from "fine" to "septic" with almost no intermediate signal. Fever is often the only manifestation, and that's precisely why it's treated as an emergency.
| Phenotype | Category | HP suggestion | Onset | Severity | Course | Frequency |
|---|---|---|---|---|---|---|
| Decreased absolute neutrophil count | Laboratory | HP:0001875 ✅ (consider temporality: TRANSIENT, or HP:0410255 ✅) |
Days 5–14 post-infusion | Mild→profound | Episodic, cycle-locked | Near-universal with myelosuppressive regimens; grade 3–4 in a large minority |
| Profound neutropenia / agranulocytosis (ANC <100–500/µL) | Laboratory | HP:0012235 ✅ (drug-induced agranulocytosis) | Nadir | Severe | Episodic | Regimen-dependent |
| Fever (the FN presentation) | Sign | 🔍 look up HP "Fever" | At nadir | Severe by definition | Acute, episodic | ~9% of patients over a course in intermediate-risk regimens ⚠️ |
| Bacteremia / bloodstream infection | Sign | 🔍 | At nadir | Severe | Acute | Documented in a minority of FN episodes; most FN is culture-negative |
| Sepsis / septic shock | Sign | 🔍 | At nadir | Life-threatening | Acute | Drives most FN mortality |
| Oral mucositis / oropharyngeal ulceration | Sign | 🔍 | Days 5–10 | Mild→severe | Episodic | Common; mechanistically coupled to CIN (§6) |
| Perianal cellulitis / typhlitis (neutropenic enterocolitis) | Sign | 🔍 | At nadir | Severe | Acute | Uncommon but high-lethality |
| Invasive fungal infection | Sign | HP:0020101 ✅ | Prolonged neutropenia (>7 days) | Severe | Acute | Risk rises steeply with duration |
| Invasive pulmonary aspergillosis | Sign | HP:0020103 ✅ | Prolonged neutropenia | Severe | Acute | Mostly hematologic malignancy / HSCT |
| Severe Candida infection | Sign | HP:6001283 ✅ (definition explicitly references profound chemotherapy neutropenia) | Prolonged | Severe | Acute | — |
| Concurrent anemia | Laboratory | 🔍 | Cumulative | Variable | Progressive over cycles | Multilineage CIM |
| Concurrent thrombocytopenia | Laboratory | 🔍 | Days 7–14 | Variable | Episodic | Multilineage CIM |
| Fatigue | Symptom | 🔍 | Throughout | Moderate | Fluctuating | Very common; largest QoL driver |
| Treatment delay / dose reduction | Not a phenotype — model as clinical_burden or progression |
— | — | — | — | — |
Severity grading — and a 2025 change you must not miss.
CTCAE v5.0 "Neutrophil count decreased," ANC thresholds ⚠️: - Grade 1: <LLN – ≥1500/µL - Grade 2: <1500 – ≥1000/µL - Grade 3: <1000 – ≥500/µL - Grade 4: <500/µL
CTCAE v6.0 (released 2025) shifted every band down one notch ✅ PMID:41158990 (Merz LE, HemaSphere 2025;9(10):e70242): - Grade 1: <1500 – 1000/µL - Grade 2: <1000 – 500/µL - Grade 3: <500 – 100/µL - Grade 4: <100/µL
The paper's own framing, quoted from the article: "It is no longer accurate or appropriate to use neutropenia severity grading from the 1980s to assess treatments from the 2020s." Two drivers: modern agents aren't 1980s cytotoxics, and the old thresholds pathologized the normal ANC range of Duffy-null individuals. Any dismech entry citing a "grade 3/4 neutropenia" rate must state which CTCAE version the source used — the same patient reclassifies between v5 and v6.
Febrile neutropenia definition (IDSA/common clinical): single oral temperature ≥38.3 °C (101 °F), or ≥38.0 °C sustained over one hour, plus ANC <500/µL or <1000/µL with predicted decline to <500 ⚠️. Note that some sources cite ANC <1500 for the FN definition; the <500 threshold is the operational one.
Quality of life. Trilaciclib trials measured patient-reported outcomes alongside myeloprotection endpoints and reported improvements in fatigue and physical wellbeing domains ✅ PMID:34408488. Beyond the direct symptom burden, CIN drives hospitalization (average LOS 6–10 days ✅ PMID:35552754), social isolation during nadir periods, and the anxiety of the "call us if you have a fever" instruction that reorganizes a patient's whole month around a thermometer.
Causal genes: none. There is no germline or somatic mutation that causes CIN. What genetics contributes is susceptibility magnitude — how much drug exposure a given host generates from a given dose, and how readily their progenitors die from it.
| Gene | HGNC | Drug(s) | Key variants | Consequence | Effect |
|---|---|---|---|---|---|
| DPYD | hgnc:3012 🔍 |
5-FU, capecitabine | *2A (rs3918290), rs67376798 (D949V), *13 (rs55886062), HapB3 (rs75017182) |
Reduced/absent dihydropyrimidine dehydrogenase → impaired pyrimidine catabolism | Severe myelosuppression, mucositis; CPIC dose reduction; EMA mandates pre-treatment testing ⚠️ |
| UGT1A1 | hgnc:12530 🔍 |
irinotecan | *28 (TA7 promoter repeat), *6 (rs4148323, East Asian) |
Reduced glucuronidation of active metabolite SN-38 | rs4148323 "correlated with irinotecan neutropenia"; IM and PM phenotypes were "independent risk factors for febrile neutropenia" in FOLFIRINOX ⚠️ (PMC8909027) |
| TPMT | hgnc:12014 🔍 |
thiopurines (6-MP, azathioprine) | *2, *3A, *3C |
Loss of S-methylation → accumulated thioguanine nucleotides | Severe, prolonged myelosuppression |
| NUDT15 | hgnc:23063 🔍 |
thiopurines | *3 (rs116855232), *6 |
"Impaired breakdown of active thiopurine metabolites" | Leukopenia/neutropenia; particularly important in East Asian ancestry. Combined TPMT+NUDT15 "could explain up to 50% of thiopurine-related toxicities" ⚠️. Case report of severe myelosuppression with *1/*6 ⚠️ PMID:42286409 |
| CYP2B6 | 🔍 | cyclophosphamide | *6 |
Altered bioactivation to 4-OH-CPA | Variable exposure |
| CDA | 🔍 | gemcitabine, capecitabine | rs2072671, rs532545 | Cytidine deaminase activity | Reported association with severe neutropenia |
| ABCB1 / SLCO1B1 | 🔍 | multiple / methotrexate | various | Transporter function | Exposure modulation |
SLC15A1 rs2297322, PXR/NR1I2 rs3732359, FMO3 rs2266782 ⚠️ACKR1 (atypical chemokine receptor 1, the Duffy blood group gene) 🔍. Homozygosity for the -67T>C promoter variant (rs2814778) abolishes erythroid ACKR1 expression and produces the Duffy-null associated neutrophil count (DANC) phenotype: a genuinely lower circulating ANC with no increased infection risk, because the neutrophils are redistributed to tissue rather than absent. This is not a disease; it was historically mislabeled "benign ethnic neutropenia."
Numbers ✅ (from PMID:41158990 and Blood Advances 2023;7(3):317 ⚠️): - Normal ANC reference range, Duffy-null adults: 1200–1540/µL; Duffy non-null adults: 2000–7500/µL - ~66–67% of Black/African American individuals in the US carry the Duffy-null phenotype - Median ANC 2820/µL (Duffy-null) vs 5005/µL (non-null) among healthy Black adults ⚠️ - "Duffy null patients have ~10% lower eligibility for clinical trials due to ANC criteria alone." ✅
A 2024 Dana-Farber analysis found that more than half of studied cancer treatments would require dose reduction, delay, or discontinuation if a Duffy-null participant's ANC fell below a threshold that is normal for their phenotype ⚠️. This is a mechanism by which an ontology-adjacent measurement error becomes an undertreatment disparity, and it is the reason CTCAE v6 moved the grade boundaries.
Curation suggestion: model this as a genetic: entry with relationship_type: MODIFIER (or SUSCEPTIBILITY for the misclassification pathway), and consider a discussions: entry with kind: KNOWLEDGE_GAP on whether Duffy-null status modifies true CIN risk versus only its measurement.
Epigenetics, chromosomal abnormalities, somatic variants: not applicable to CIN itself. Relevant adjacent finding: clonal hematopoiesis (CH) — pre-existing PPM1D, TP53, DNMT3A, TET2 clones are selected for by cytotoxic therapy, and CH-derived therapy-related myeloid neoplasms occur in up to 2.3% of autologous-HSCT recipients at a median 2.6 years post-transplant, with worse outcomes than non-CH-derived tMN ⚠️ (Leukemia 2024, PMC11147764). This belongs in §11 as a long-term complication of the same cytotoxic exposure, not as a cause of CIN.
For CIN, "environmental factor" is the drug exposure, which makes this section unusually well-defined.
Suggested environmental: entries with influences_mechanisms links (remember: target here is a bare node name, not an entity reference — the pathograph does not use <kind>#<name>):
| Exposure | ECTO binding | environmental_effect |
Target node |
|---|---|---|---|
| Systemic cytotoxic chemotherapy administration | 🔍 search ECTO for antineoplastic-agent exposure; may be genuinely unbindable — record the search in notes: if so |
TRIGGERS |
Cytotoxic Injury to Granulocyte Progenitors |
| Prior/concurrent ionizing radiation to marrow-bearing bone | 🔍 ECTO ionizing radiation exposure | EXACERBATES |
Reduced Hematopoietic Reserve |
| Antibiotic exposure (prophylactic fluoroquinolone) | 🔍 | MODULATES |
Gut Microbiota Disruption |
A note on predicate choice: TRIGGERS and EXACERBATES are in qc_plugins.CAUSAL_PREDICATES and count toward compliance scoring. Chemotherapy genuinely triggers this, so TRIGGERS is honest here — but antibiotic prophylaxis's net effect on outcomes is contested, so MODULATES is the right non-committal predicate for that one.
Lifestyle factors: limited independent evidence. Nutritional status and oral/dental hygiene are the two with plausible mechanistic links (barrier integrity, portal of entry).
Infectious agents — as consequence, not cause. The organisms that matter in FN, worth curating with NCBITaxon bindings 🔍: - Gram-negative: Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa (the one that kills fast) - Gram-positive: coagulase-negative staphylococci (most common isolate, often line-related), Staphylococcus aureus, viridans group streptococci (mucositis-associated, can cause ARDS) - Anaerobes: Clostridioides difficile - Fungi: Candida spp., Aspergillus spp. (risk rises sharply beyond ~7 days of neutropenia) - Viral reactivation: HSV, VZV, CMV
Critically: most FN episodes are culture-negative. Only a minority yield a microbiologic diagnosis, which is the empirical anchor for the "febrile mucositis" reframing in §6.
BBC3) → BAX/BAK-dependent mitochondrial outer membrane permeabilization → intrinsic apoptosis of progenitors. Evidence: "PUMA is largely responsible for the apoptotic effect downstream of p53 in hematopoietic stem cells after irradiation" and "Many chemotherapeutic agents function, in part, by inducing apoptosis through p53-dependent up-regulation of proapoptotic BH3-only proteins such as PUMA" ⚠️. Puma-null mice are protected from HSPC depletion ⚠️ (Blood 2010;115:3472 and 115:4707). This step is inferred for most cytotoxics from irradiation and dyskeratosis-congenita models rather than demonstrated directly for each agent — mark directness: INDIRECT and evidence_source: MODEL_ORGANISM accordingly.evidence_source: MODEL_ORGANISM; this is a HUMAN_MODEL_MISMATCH candidate, not a human claim.G-CSF / CSF3R signaling. G-CSF (CSF3) is "the major regulator of neutrophil production under basal conditions of hematopoiesis" and is essential for "emergency" granulopoiesis in response to bacterial infection ⚠️. Mechanism: G-CSF binds CSF3R → conformational dimerization aligns Box1/Box2 motifs → recruitment and activation of JAK1/JAK2/TYK2 → tyrosine phosphorylation → downstream STAT3 (principal axis in granulocyte-monocyte progenitors), plus MAPK/ERK, PI3K-AKT-mTOR, SRC-family kinases, NF-κB ⚠️ PMID:41950547. STAT3 both drives myeloid differentiation and provides negative feedback via SOCS3. Therapeutic G-CSF shortcuts the depleted-storage-pool problem by expanding and accelerating the surviving progenitor compartment.
CDK4/6 dependence — the trilaciclib insight. HSPCs proliferate in a CDK4/6-dependent manner; many tumors (notably SCLC, which is almost universally RB1-deficient) do not. Transient pharmacologic CDK4/6 inhibition therefore "induces reversible G1-arrest in CDK4/6-dependent cells (such as HSPCs and lymphocytes)" ⚠️, parking the marrow safely outside S-phase for the duration of chemotherapy exposure while the RB-null tumor keeps cycling into the cytotoxic. It's a beautifully asymmetric trick — like closing the storm shutters on one house while the neighbors' windows stay open, on purpose.
Cell types (CL) 🔍 — verify all before binding: - neutrophil; granulocyte monocyte progenitor cell; common myeloid progenitor; hematopoietic stem cell; promyelocyte; myeloblast; mesenchymal stem cell of bone marrow (niche); intestinal epithelial cell; oral mucosa epithelial cell
Biological processes (GO) 🔍: - granulocyte differentiation; myeloid cell differentiation; neutrophil chemotaxis; intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; cell cycle arrest / G1/S transition of mitotic cell cycle; cellular senescence; hematopoietic stem cell proliferation; response to oxidative stress; cytokine-mediated signaling pathway; JAK-STAT cascade; innate immune response; defense response to bacterium
Anatomy (UBERON) 🔍: bone marrow; blood; oral mucosa; intestinal mucosa; spleen
Chemicals (CHEBI) 🔍: docetaxel, doxorubicin, cyclophosphamide, carboplatin, 5-fluorouracil, irinotecan, gemcitabine, topotecan
biological_scale tagging suggestion: step 2–3 nodes → MOLECULAR; steps 4–5 → CELLULAR; step 8 mucosal barrier → TISSUE; step 9 febrile neutropenia / sepsis → ORGANISM. Keep one value per node; if a node wants two, split it.
just discover-datasets and just verify-datasets before committing any accession — and remember that verification proves existence, never relevance.Primary organ: bone marrow (UBERON 🔍) — specifically the hematopoietically active red marrow of the pelvis, sternum, vertebrae, ribs, and proximal long bones. Involvement is bilateral, diffuse, and systemic, not focal.
Secondary organ involvement (all consequences of failed defense or shared cytotoxic injury): - Blood — the compartment where the deficit is measured - Oral cavity and oropharynx — mucositis - Gastrointestinal tract — mucositis, typhlitis (classically cecum/ascending colon) - Perianal region — cellulitis - Lung — pneumonia, invasive aspergillosis - Skin and vascular access sites — cellulitis, line infection - Any organ, via hematogenous seeding once bacteremia is established
Body systems: hematopoietic and immune (primary); gastrointestinal, integumentary, respiratory (secondary).
Tissue level: hematopoietic tissue; stratified squamous and columnar mucosal epithelium; marrow stroma/vasculature (the niche).
Cell populations targeted: the mitotic granulocytic progenitor pool preferentially; HSCs at higher/repeated doses; lymphocytes; erythroid and megakaryocytic progenitors (multilineage CIM); intestinal crypt stem cells; marrow mesenchymal stromal cells.
Subcellular (GO Cellular Component) 🔍: nucleus (DNA damage); mitochondrion (MOMP, intrinsic apoptosis); spindle/microtubule cytoskeleton (taxane target); specific and azurophil granules (neutrophil function).
Lateralization: not applicable — systemic and symmetric.
Onset: acute and predictable, keyed to the infusion. No congenital or age-of-onset concept in the usual sense; the "onset" is pharmacologic. Age distribution mirrors who gets chemotherapy — bimodal-ish, with pediatric oncology and a large adult/geriatric mass.
Within-cycle course (the canonical arc): 1. Day 0: chemotherapy administered 2. Days 1–4: ANC often transiently normal or elevated (storage pool still shipping; steroids and stress demargination can raise it) 3. Days 5–7: descent begins 4. Days 7–14: nadir — most regimens days 10–14; docetaxel monotherapy median day 7 ⚠️; some regimens (gemcitabine, carboplatin) run later or biphasic 5. Days 14–21: recovery as surviving progenitors repopulate 6. Day 21: next cycle — assuming recovery is complete, which is the crux of every dose-delay decision
Duration: self-limited per cycle in solid-tumor chemotherapy (typically ~5–10 days of grade 3–4). In AML induction and HSCT conditioning, profound neutropenia lasts weeks, and duration is the dominant risk multiplier for invasive fungal disease.
Course pattern: episodic and cycle-locked — the clearest example of a recurrent, treatment-entrained disease course in oncology. Model as temporality: RECURRENT (or TRANSIENT per episode) rather than CHRONIC.
Progression across cycles: cumulative marrow injury means nadirs often deepen and recovery slows over successive cycles, especially with alkylators and carboplatin.
Remission: treatment-induced (G-CSF) or spontaneous with time. Complete hematologic recovery is the norm; incomplete recovery signals marrow reserve exhaustion, marrow involvement by tumor, or evolving myelodysplasia.
Critical intervention windows: - Before cycle 1 — because 59% of FN happens there ⚠️. Primary prophylaxis decided before the first dose is the single highest-yield intervention in this whole entry. - 24–72 h after chemotherapy — the pegfilgrastim/filgrastim administration window (G-CSF given too close to the cytotoxic can theoretically recruit progenitors into cycle at the worst moment). - First hour of fever onset — "door-to-antibiotic time"; empiric broad-spectrum antibiotics within 60 minutes is the standard-of-care target.
Inheritance: not applicable. CIN is acquired and iatrogenic. Do not populate an inheritance: block with a Mendelian mode. The heritable component is pharmacogenomic susceptibility — model with genetic: entries typed SUSCEPTIBILITY or MODIFIER, and if you want an inheritance concept at all, the honest one is polygenic/multifactorial (HP:0010982 🔍 — verify) with a description naming the pharmacogenes. Penetrance, anticipation, germline mosaicism, consanguinity: all not applicable.
| Measure | Value | Source |
|---|---|---|
| Drug-induced neutropenia, US | 2.4–15.4 cases per million per year | ✅ PMID:35552754 |
| Febrile neutropenia, US | 7.8 cases per 1,000 patients with cancer | ✅ PMID:35552754 |
| Patients with ≥1 FN episode (intermediate-risk regimens, prospective multinational) | 9% | ⚠️ PMC10570161 |
| FN by cycle | 5% (cycle 1), 3% (cycles 2–3), 1% (cycles 4–6); 59% of events in cycle 1 | ⚠️ PMC10570161 |
| FN risk, high-risk regimens (TAC etc.) | >20% by guideline definition | ⚠️ |
| ED visits for FN resulting in admission | 94% | ✅ PMID:35552754 |
| Pediatric oncology hospitalizations due to neutropenia/FN | 10.1–22.7% | ✅ PMID:35552754 |
For dismech prevalence: records, use the structured slots — measure_type: ANNUAL_INCIDENCE for the per-million and per-1,000 figures, rate_per_100000 normalized (2.4–15.4/million → 0.24–1.54 per 100,000; 7.8/1,000 cancer patients → 780 per 100,000 cancer patients, and note the denominator is cancer patients, not general population, in population:). Never let a per-cycle FN rate and a per-patient FN rate sit in the same comparison.
NUDT15 variant frequencies are highest in East Asian populations; DPYD variant spectra differ substantially by ancestry (HapB3 is European-enriched; several African-ancestry-relevant variants are under-tested by standard panels).Diagnosis is a lab value plus a thermometer. There's no imaging finding, no biopsy, no genetic test that makes the diagnosis.
Biochemical entry with interpretation_bands)Adult ANC, conventional: 1500–8000/µL (LLN commonly 1500). But the Duffy-null finding means a single population-wide interval is wrong for a third of some populations. If you curate reference_ranges, add a population:-stratified pair:
and then interpretation_bands mapping ANC <1500 / <1000 / <500 / <100 to the CTCAE tiers — stating the version, since v5 and v6 disagree (§3). This is exactly the graded-category case the interpretation_bands slot exists for, and the CKD-MBD entry is the pattern to copy.
Not diagnostic for CIN, but predictive and increasingly standard:
- DPYD genotyping before fluoropyrimidines — mandated pre-treatment in the EU; CPIC guideline-backed
- UGT1A1 before irinotecan (especially at high dose or in FOLFIRINOX)
- TPMT and NUDT15 before thiopurines — CPIC guideline-backed
- Pre-emptive multi-gene PGx panels ⚠️ (PMC8827955 describes implementation)
- WGS/WES/CMA/karyotype/FISH/mtDNA/repeat-expansion testing: not applicable
- ACKR1 (rs2814778) genotyping or Duffy phenotyping: increasingly proposed to avoid misclassifying DANC as pathologic neutropenia ⚠️ (Am J Hematol 2025, "Diagnosis of Duffy Null-Associated Neutropenia During Chemotherapy")
| Alternative | Distinguishing feature |
|---|---|
| Duffy-null associated neutrophil count (DANC) | Chronic, pre-treatment baseline; no infection history; ACKR1 rs2814778 homozygous — not a toxicity |
| Marrow infiltration by tumor | Non-recovering counts; leukoerythroblastic film; biopsy |
| Therapy-related MDS / AML | Late, progressive, dysplastic morphology, cytogenetic/molecular abnormalities |
| Drug-induced immune agranulocytosis (non-chemo: clozapine, methimazole, ticlopidine) | Idiosyncratic, not dose-predictable, no nadir timing |
| Viral suppression (HIV, EBV, CMV, parvovirus B19) | Serology/PCR |
| Sepsis-associated neutropenia | Consumption rather than production failure |
| Autoimmune neutropenia (HP:0001904 ✅) | Anti-neutrophil antibodies |
| Nutritional (B12, folate, copper) | Macrocytosis, low levels |
| Hypersplenism | Splenomegaly, multilineage |
DPYD/UGT1A1/TPMT/NUDT15| Population | In-hospital mortality (neutropenia/FN) |
|---|---|
| Pediatric oncology | 0.4–3.0% |
| Adults, solid tumors | 2.6–7.0% |
| Adults, hematologic malignancies | 7.4% |
Bacteremia and sepsis; septic shock; invasive fungal disease; typhlitis; ARDS (notably viridans streptococcal); prolonged hospitalization; central line loss; C. difficile colitis; and the treatment-level complication — dose delay and dose reduction.
Complete hematologic recovery is the rule for a single cycle. The prognostically important question is whether it recovers in time for the next cycle.
Two findings sit in tension and both are real:
(a) Reduced relative dose intensity (RDI) is associated with worse cancer survival. RDI ≥85% is the conventional threshold for early breast cancer ⚠️; a systematic review and meta-analysis found RDI associated with survival in advanced solid tumors ⚠️ PMID:33973301; the early-breast-cancer/aggressive-lymphoma analysis is ⚠️ PMID:20227889. Older age, obesity, and FN itself are associated with reduced RDI ⚠️.
(b) Experiencing neutropenia is associated with better survival. A meta-analysis of 13 trials, 9,528 patients found a hazard ratio of death of 0.69 (95% CI 0.64–0.75) for patients with higher-grade neutropenia/leukopenia versus lower-grade or none ⚠️ PMID:20960191. Grade ≥3 neutropenia on day 8 of cycle 1 in mCRPC docetaxel: 1-year OS 81% vs 68% ⚠️.
These reconcile if you read neutropenia as a pharmacodynamic dosimeter — a readout that the patient actually received a biologically active exposure. As one gastric-cancer analysis puts it, "the absence of such toxicity indicates that the dosages of drugs are not pharmacologically adequate" ⚠️. But the inference has an obvious confounding hazard (patients who survive long enough to have cycle-1 toxicity, patients with better organ function, immortal-time bias in some designs). Curate this as SUPPORT + directness: INDIRECT, and put a discussions: entry with kind: KNOWLEDGE_GAP on whether the association is causal or a marker of exposure. Do not let the entry imply that inducing neutropenia is therapeutic.
Therapy-related myeloid neoplasms: up to 2.3% of autologous-HSCT recipients at median 2.6 years; risk factors age ≥60, male sex, radiotherapy, ≥3 prior lines, graft cellularity; post-aHSCT tMN enriched for PPM1D and TP53 lesions with shorter latency and worse OS; CH-derived tMN does worse than non-CH-derived ⚠️ (Leukemia 2024, PMC11147764).
MASCC and CISNE scores; ANC nadir depth; duration of neutropenia (the strongest predictor of invasive fungal disease); documented bacteremia; hemodynamic instability; comorbidity burden; age; hematologic vs solid malignancy; time-to-antibiotic.
Colony-stimulating factors (G-CSF). The current authority is ✅ PMID:41740078 — "WBC Growth Factors: ASCO Guideline Update," J Clin Oncol 2026, which replaces the 2015 version following a systematic review of RCTs and meta-analyses published September 2014 – August 2025. Core recommendation, quoted: "Prophylactic use of CSFs to reduce the risk of febrile neutropenia is warranted when the risk...is approximately 20% or higher." For regimens with <20% risk, primary prophylaxis may still be warranted based on age, medical history, or disease characteristics ⚠️. Named acceptable agents: filgrastim, pegfilgrastim, eflapegrastim, and biosimilars ✅.
Agents and suggested NCIT bindings:
| Agent | therapeutic_modality |
treatment_term |
therapeutic_agent NCIT/CHEBI |
|---|---|---|---|
| Filgrastim (short-acting G-CSF) | PROTEIN_REPLACEMENT or PEPTIDE (judgement call; it's a recombinant cytokine) |
NCIT:C15986 Pharmacotherapy | 🔍 NCIT filgrastim |
| Pegfilgrastim | as above | NCIT:C15986 | NCIT:C123927 ✅ (Pegfilgrastim Anti-neutropenic Factor) or 🔍 the base pegfilgrastim term |
| Pegfilgrastim biosimilars | — | NCIT:C15986 | NCIT:C104005 ✅ (LA-EP2006); others 🔍 |
| Eflapegrastim (Rolvedon, FDA 2022) | — | NCIT:C15986 | NCIT:C103856 ✅ |
| Efbemalenograstim alfa (Ryzneuta, FDA 22 Nov 2023; China 6 May 2023) | — | NCIT:C15986 | 🔍 — a dimeric G-CSF-Fc fusion without PEGylation or polysorbate 80 ⚠️ PMID:37368138 |
| Lipegfilgrastim | — | NCIT:C15986 | NCIT:C101778 ✅ |
| Pegteograstim / Empegfilgrastim / Mecapegfilgrastim | — | NCIT:C15986 | NCIT:C128891 / C134829 / C170155 ✅ |
| Trilaciclib (Cosela, FDA 12 Feb 2021) | SMALL_MOLECULE |
NCIT:C15986 or NCIT:C93352 Targeted Therapy | 🔍 NCIT trilaciclib |
Eflapegrastim efficacy signal: severe neutropenia in cycle 1 15.8% vs 24.3% for pegfilgrastim ⚠️.
Trilaciclib. First-in-class CDK4/6 inhibitor given before chemotherapy for myeloprotection in ES-SCLC. Pivotal evidence: ✅ PMID:31504118 (Ann Oncol 2019, phase Ib/randomized II, 94 patients, trilaciclib + etoposide/carboplatin) — grade ≥3 AEs 50% vs 83.8%, improvements across neutrophil, RBC, and lymphocyte measures, comparable antitumor efficacy, no trilaciclib-related grade ≥3 AEs. Pooled phase 2 analysis ✅ PMID:34408488 (123 trilaciclib vs 119 placebo; NCT02499770, NCT03041311, NCT02514447) — myeloprotection across age groups, greater in patients ≥65, with improved QoL and on-schedule chemotherapy delivery. target_mechanisms should point at the progenitor-apoptosis node with a MODULATES/preventive framing.
Plinabulin (investigational). PROTECTIVE-2 phase 3 (n=221, TAC q21d, plinabulin 40 mg day 1 + pegfilgrastim 6 mg day 2 vs pegfilgrastim alone): grade 4 CIN prevention in cycle 1 31.5% vs 13.6%, P = .0015 ⚠️. FDA breakthrough designation Sept 2020 ⚠️. Not FDA-approved — curate as investigational and do not imply availability.
Antimicrobial prophylaxis. Fluoroquinolone prophylaxis is considered for high-risk patients with expected prolonged profound neutropenia (classically ANC <100/µL for >7 days), balanced against resistance selection and C. difficile risk. Antifungal (posaconazole) and anti-PJP (TMP-SMX) prophylaxis per risk group. This area is genuinely contested — use MODULATES-style hedging, not causal predicates.
DPYD, UGT1A1, TPMT/NUDT15 — the personalized-medicine arm of this entryG-CSF: bone pain (very common), splenic rupture (rare), ARDS (rare), capillary leak; theoretical concern about stimulating CSF3R-expressing myeloid malignancies. Trilaciclib: fatigue, hypocalcemia, hypokalemia, headache, injection-site reactions. Broad-spectrum antibiotics: C. difficile, resistance selection, microbiome collapse (which loops back to §6, branch B — the treatment feeds the mechanism).
Primary prevention (stop the neutropenia happening):
- FN risk assessment before cycle 1, using regimen risk + patient factors (Lyman-type model)
- G-CSF primary prophylaxis at the ≥20% threshold ✅ PMID:41740078
- Trilaciclib in ES-SCLC receiving platinum/etoposide or topotecan
- Regimen selection favoring lower myelotoxicity where efficacy-equivalent
- Pre-emptive pharmacogenomic dosing (DPYD, UGT1A1, TPMT, NUDT15)
- Dental evaluation and source control before starting therapy
Secondary prevention (stop the neutropenia becoming a catastrophe): - CBC monitoring around the expected nadir - Secondary G-CSF prophylaxis after a prior FN episode or dose-limiting neutropenia - Patient education: the thermometer protocol — take a temperature for any chills or malaise, call at ≥38 °C, do not take antipyretics that mask it - Antimicrobial prophylaxis in the high-risk subset
Tertiary prevention: - Door-to-antibiotic ≤60 minutes - Risk-stratified admission via MASCC/CISNE - Central line care bundles - Antifungal surveillance in prolonged neutropenia
Immunization: inactivated influenza and COVID-19 vaccines are recommended in chemotherapy patients (ideally timed away from nadir); pneumococcal per risk. Live vaccines contraindicated. These prevent infection, not neutropenia — keep the distinction in the entry.
Behavioral / public health: hand hygiene; food-safety precautions; avoiding sick contacts and crowds during nadir; the "neutropenic diet" is not supported by evidence and has been de-implemented in most centers — worth curating explicitly as a refuted intervention with supports: REFUTE if a suitable citation is obtained.
Genetic counseling: not applicable in the reproductive sense; pharmacogenomic counseling is the analogue.
There is no natural disease here — CIN cannot occur without an anthropogenic exposure. But there are two genuine cross-species angles:
Veterinary iatrogenic CIN. Dogs (NCBITaxon:9615 🔍) and cats (NCBITaxon:9685 🔍) receiving veterinary chemotherapy (doxorubicin, vincristine, cyclophosphamide, lomustine, carboplatin) develop dose-limiting neutropenia with nadir timing that differs by agent — lomustine and carboplatin notably later. Canine lymphoma CHOP protocols are the highest-volume setting. This is a real clinical entity in veterinary oncology and evidence from it grades as evidence_source: MODEL_ORGANISM per dismech rules (veterinary observations in non-human mammals). Breed effects are real and mechanistically interesting: ABCB1 (MDR1) nt230(del4) in Collies and related herding breeds (VBO 🔍) causes profound sensitivity to P-glycoprotein substrates including vincristine and doxorubicin — a genuine veterinary pharmacogenomic parallel to the human DPYD story, and worth a genetic: or comparative note. Search OMIA for the ABCB1 entry to get a citable identifier.
Evolutionary conservation. Granulopoiesis, CSF3/CSF3R signaling, and p53/PUMA-mediated progenitor apoptosis are conserved across vertebrates, which is why the mouse models in §15 work at all. Orthologs: Csf3r, Trp53, Bbc3 (mouse); csf3r, tp53 (zebrafish) — NCBI Gene IDs 🔍.
Zoonotic potential / cross-species transmission: not applicable.
Because the initiating lesion is a drug, CIN is unusually easy to model — you give the animal the drug. That makes it one of the better-supported iatrogenic conditions for animal_models: curation.
| Model | Induction | Phenotype recapitulation | Limitations |
|---|---|---|---|
| Mouse, 5-FU myeloablation | Single 150 mg/kg 5-FU i.p. → "severe neutropenia lasting from days 3 to 11 post-injection; 5-FU-treated mice achieve normal ANC levels by days 12 to 14" ⚠️ | Recapitulates nadir–recovery arc with quantitatively similar kinetics; workhorse for G-CSF and myeloprotectant testing | Single-dose, not cyclic; murine neutrophil biology differs (mice are lymphocyte-predominant, humans neutrophil-predominant); no tumor in most designs |
| Mouse, cyclophosphamide | e.g. 200 mg/kg i.p. ✅ PMID:37538353 | Neutropenia + the metastasis-permissive phenotype | Strain-dependent susceptibility — "there are differences in susceptibility to neutropenia after cyclophosphamide treatment between inbred strains" ⚠️, which is both a limitation and a genetic-mapping opportunity |
| Mouse, doxorubicin | 10 mg/kg i.v. ✅ PMID:37538353 | Neutropenia; increased artificial lung metastasis | — |
| Mouse, cisplatin (negative control) | 10 mg/kg i.v. ✅ | Does NOT produce the effect — a built-in specificity control | Its value is the negative result |
| Anti-Ly6G antibody depletion | Immunologic, not cytotoxic | Isolates the neutropenia variable from all other chemotherapy effects ✅ PMID:37538353 | Depletes mature neutrophils only; does not model progenitor loss or marrow injury |
| Mouse, cytarabine | — | Used in BB-10010 (MIP-1α analog) chemoprotection studies ⚠️ | — |
| Puma-null / Trp53-null mice | Genetic | Protected from HSPC apoptosis after irradiation/genotoxic stress ⚠️ | Establishes the mechanism (§6 step 3) but is a protection model, not a disease model |
The exemplar link to curate — Russo et al. ✅ PMID:37538353 is the strongest single animal_models entry available here, because it has all four ModelMechanismLink components in one paper:
animal_models:
- name: Cyclophosphamide-induced neutropenia in Renca/LLC-bearing mice
species: Mouse
publication: PMID:37538353
modeled_mechanisms:
- target: <your neutropenia node's bare name>
relationship: RECAPITULATES
fidelity: MODERATE
limitations: >-
Single high-dose administration rather than cyclic human dosing; murine
neutrophil biology and marrow reserve differ from human; the metastasis
readout has no confirmed human counterpart.
readouts:
- name: Circulating neutrophil count
target: <same bare name>
direction: DECREASED
...
Note the anti-Ly6G arm and the G-CSF rescue arm (which prevented the metastasis phenotype) are natural PERTURBS and RESCUES links respectively — a rare chance to use three relationship values from one paper.
mpx:GFP, lyz:DsRed) allow live imaging of granulopoiesis and chemotoxic depletion. Useful for screening; poor for marrow-niche biology (no long-bone marrow).experimental_models: (non-animal), not animal_models:.experimental_models candidate with experimental_model_type set appropriately.computational_models: candidates with modeled_mechanisms links to the progenitor and storage-pool nodes.Model databases: MGI, IMPC, KOMP, IMSR, MMRRC (mouse); ZFIN (zebrafish); Cellosaurus/ATCC (lines); OMIA (veterinary).
A few things I'd flag before anyone starts writing YAML:
MONDO:0001475 with skos:narrowMatch, record the gap, and consider whether this is better modeled as a kb/modules/ mechanism module than a disease entry — "cytotoxic myelosuppression" recurs across every myelosuppressive drug toxicity entry the KB will ever have, and the treatment-toxicity module family already exists for exactly this shape of thing. Run just list-modules and grep kb/modules for "myelosuppression" and "neutropenia" before deciding; a module here would let anthracycline, taxane, and platinum toxicity entries all conforms_to one chain instead of re-deriving it.discussions: entry, not a confident causal claim in either direction.MODEL_ORGANISM only and is a textbook HUMAN_MODEL_MISMATCH candidate.just fetch-reference before quoting. The exact-substring rule is unforgiving, and several of the quotes above came from search-result summaries that may have paraphrased. My own memory file on this (preverify-snippets-before-writing-yaml) exists because a blocked Write is a silent no-op.ACKR1 deserves its own curated thread through genetic:, reference_ranges (population-stratified), and probably a notes: line in diagnostics. It's the most consequential recent development in this space and it's an equity finding as much as a biology one.Checked with linkml-reference-validator 0.2.1.
| Outcome | Count |
|---|---|
| References checked | 37 |
| Resolved | 22 |
| Unresolved (possible confabulation) | 0 |
| Unverifiable | 15 |
| References weighed for topical relevance | 22 |
| On topic | 10 |
| Off topic | 0 |
22 of 37 references resolved; the rest could not be looked up either way.