CPT1C-related hereditary spastic paraplegia (SPG73) is a rare, pure autosomal dominant form of hereditary spastic paraplegia caused by a heterozygous variant in CPT1C, the gene encoding the neuronal (brain-specific) isoform of carnitine palmitoyltransferase 1. Unlike the liver (CPT1A) and muscle (CPT1B) isozymes, CPT1C localizes to the endoplasmic reticulum rather than the mitochondrion, is expressed predominantly in neurons, and has little or no enzymatic activity in fatty acid oxidation; it instead participates in the ER protein-interaction network (including atlastin-1/ATL1, the SPG3A protein) that shapes the tubular ER and regulates neuronal lipid-droplet biogenesis. The disease was first defined in a three-generation southern Italian family carrying the c.109C>T (p.Arg37Cys) substitution, which strictly cosegregated with disease and impairs lipid-droplet formation, apparently through a dominant-negative mechanism. Clinically it presents as slowly progressive, adult-onset, pure spastic paraparesis of the lower limbs (spasticity, hyperreflexia, extensor plantar responses, mild weakness) with normal cognition and normal peripheral nerve conduction, reflecting a length-dependent distal axonopathy of the corticospinal tract. Because the disease is placed within the carnitine-cycle/fatty-acid metabolism family by gene homology (a CPT1 isoform) but manifests as a neurodegenerative corticospinal disorder rather than a systemic fatty-acid oxidation defect, it is curated here as a distinct entry rather than folded into the hepatic/muscle carnitine palmitoyltransferase deficiencies.
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name: CPT1C-Related Hereditary Spastic Paraplegia
creation_date: "2026-07-07T00:00:00Z"
description: >-
CPT1C-related hereditary spastic paraplegia (SPG73) is a rare, pure autosomal
dominant form of hereditary spastic paraplegia caused by a heterozygous variant
in CPT1C, the gene encoding the neuronal (brain-specific) isoform of carnitine
palmitoyltransferase 1. Unlike the liver (CPT1A) and muscle (CPT1B) isozymes,
CPT1C localizes to the endoplasmic reticulum rather than the mitochondrion, is
expressed predominantly in neurons, and has little or no enzymatic activity in
fatty acid oxidation; it instead participates in the ER protein-interaction
network (including atlastin-1/ATL1, the SPG3A protein) that shapes the tubular
ER and regulates neuronal lipid-droplet biogenesis. The disease was first
defined in a three-generation southern Italian family carrying the c.109C>T
(p.Arg37Cys) substitution, which strictly cosegregated with disease and impairs
lipid-droplet formation, apparently through a dominant-negative mechanism.
Clinically it presents as slowly progressive, adult-onset, pure spastic
paraparesis of the lower limbs (spasticity, hyperreflexia, extensor plantar
responses, mild weakness) with normal cognition and normal peripheral nerve
conduction, reflecting a length-dependent distal axonopathy of the corticospinal
tract. Because the disease is placed within the carnitine-cycle/fatty-acid
metabolism family by gene homology (a CPT1 isoform) but manifests as a
neurodegenerative corticospinal disorder rather than a systemic fatty-acid
oxidation defect, it is curated here as a distinct entry rather than folded into
the hepatic/muscle carnitine palmitoyltransferase deficiencies.
synonyms:
- SPG73
- Hereditary spastic paraplegia 73
- CPT1C-related autosomal dominant pure spastic paraplegia
- Autosomal dominant spastic paraplegia type 73
category: Mendelian
disease_term:
preferred_term: hereditary spastic paraplegia 73
term:
id: MONDO:0014568
label: hereditary spastic paraplegia 73
mappings:
mondo_mappings:
- term:
id: MONDO:0014568
label: hereditary spastic paraplegia 73
mapping_predicate: skos:exactMatch
mapping_source: MONDO
parents:
- Hereditary Spastic Paraplegia
inheritance:
- name: Autosomal dominant
description: >-
Autosomal dominant inheritance; the reported c.109C>T (p.Arg37Cys) CPT1C
variant cosegregated with disease across an affected three-generation family
and is proposed to act through a dominant-negative mechanism.
inheritance_term:
preferred_term: Autosomal dominant inheritance
term:
id: HP:0000006
label: Autosomal dominant inheritance
evidence:
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "This variant was also absent in the other unaffected participants (III-1, IV-2, and IV-3), thus strictly cosegregating with the disease phenotype."
explanation: The CPT1C variant cosegregated with disease in an autosomal dominant pedigree.
pathophysiology:
- name: CPT1C Dysfunction (Neuronal ER Isoform)
conforms_to: "corticospinal_tract_axonopathy#Long-Axon Maintenance Machinery Defect"
description: >-
A heterozygous CPT1C variant (p.Arg37Cys) alters the neuronal, ER-localized
isoform of carnitine palmitoyltransferase 1. CPT1C differs from the mitochondrial
CPT1A/CPT1B isozymes: it localizes to the endoplasmic reticulum, is expressed
mainly in neurons, and has little or no fatty-acid-oxidation activity, so the
lesion is a neuronal ER-protein defect rather than a classic carnitine-cycle
fatty-acid oxidation block.
gene:
preferred_term: CPT1C
term:
id: hgnc:18540
label: CPT1C
evidence:
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "we identified a mutation in the neuronal isoform of the carnitine palmitoyl-transferase (CPT1C) gene as the genetic cause of a pure AD-HSP, termed hereditary spastic paraplegia type 73 (SPG73)"
explanation: A CPT1C mutation is the genetic cause of SPG73.
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "It localizes to the ER and not to the mitochondria11 and has little or no enzymatic activity in fatty acid oxidation."
explanation: Establishes that CPT1C is ER-localized and lacks fatty-acid-oxidation activity, distinguishing it from CPT1A/CPT1B.
downstream:
- target: Disrupted ER Protein-Interaction Network
description: >-
Altered CPT1C perturbs the ER protein-interaction network that shapes the
tubular endoplasmic reticulum in neurons.
- name: Disrupted ER Protein-Interaction Network
description: >-
CPT1C is part of the endoplasmic reticulum protein-interaction network that
shapes the tubular ER; it interacts with atlastin-1 (ATL1, the SPG3A protein),
linking CPT1C to the same ER-morphogenesis machinery implicated in other pure
hereditary spastic paraplegias. Perturbation of this network is a recurrent
HSP pathogenic theme.
cell_types:
- preferred_term: neuron
term:
id: CL:0000540
label: neuron
biological_processes:
- preferred_term: endoplasmic reticulum organization
term:
id: GO:0007029
label: endoplasmic reticulum organization
modifier: ABNORMAL
evidence:
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "We show that CPT1C is expressed in motor neurons and interacts with atlastin-1, the protein encoded by the ATL1 gene."
explanation: CPT1C interacts with the ER-shaping protein atlastin-1 (SPG3A), placing it in the HSP ER-network.
downstream:
- target: Impaired Neuronal Lipid Droplet Biogenesis
description: >-
Disruption of the CPT1C/atlastin-1 ER network impairs neuronal lipid-droplet
formation.
- name: Impaired Neuronal Lipid Droplet Biogenesis
description: >-
Mutant CPT1C markedly reduces the number and size of lipid droplets in
transfected cells, and Cpt1c-null cortical neurons show reduced lipid droplets,
supporting a dominant-negative effect on lipid-droplet formation and altered
lipid-mediated signaling in neurons.
cell_types:
- preferred_term: neuron
term:
id: CL:0000540
label: neuron
biological_processes:
- preferred_term: lipid droplet formation
term:
id: GO:0140042
label: lipid droplet formation
modifier: DECREASED
evidence:
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "We showed that mutant CPT1C markedly reduces the number and size of LDs in transfected cells."
explanation: Mutant CPT1C impairs lipid-droplet biogenesis in a cellular model.
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: "cortical neurons derived from Cpt1c−/− mice23,27 similarly exhibited a marked reduction in the number of LDs, suggesting a dominant negative mechanism for the Arg37Cys mutation"
explanation: Cpt1c-null mouse cortical neurons recapitulate the lipid-droplet reduction, supporting a dominant-negative mechanism.
downstream:
- target: Corticospinal Tract Axonal Degeneration
description: >-
Impaired neuronal lipid-droplet metabolism is proposed to compromise the
integrity of long corticospinal axons.
- name: Corticospinal Tract Axonal Degeneration
conforms_to: "corticospinal_tract_axonopathy#Distal Length-Dependent Degeneration of Long CNS Axons"
description: >-
Convergent ER/lipid dysfunction in corticospinal motor neurons is proposed to
compromise the integrity of their long axons, producing the length-dependent
distal corticospinal-tract axonopathy that underlies the spastic paraparesis of
hereditary spastic paraplegia. Neurophysiology in affected individuals showed
prolonged central motor conduction with normal peripheral nerve conduction,
localizing the lesion to the corticospinal tract (and dorsal columns).
cell_types:
- preferred_term: upper motor neuron
term:
id: CL:0008048
label: upper motor neuron
evidence:
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "indicating abnormalities of the corticospinal tract and the dorsal column. Peripheral nerve conduction velocities were normal in all participants examined"
explanation: Neurophysiology localizes the SPG73 lesion to the corticospinal tract with intact peripheral nerves, consistent with a central distal axonopathy.
phenotypes:
- name: Spastic paraplegia
category: Neurological
description: >-
Pure, slowly progressive lower-limb spastic paraparesis is the defining
manifestation of SPG73, with adult onset.
phenotype_term:
preferred_term: Spastic paraplegia
term:
id: HP:0001258
label: Spastic paraplegia
clinical_course: PROGRESSIVE
onset:
onset_category: YOUNG_ADULT
evidence:
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "We identified a 3-generation family from southern Italy with dominantly inherited, adult-onset, and pure spastic paraplegia of unknown genetic cause"
explanation: Affected individuals present with adult-onset pure spastic paraplegia.
- name: Lower limb spasticity
category: Neurological
description: Spasticity of the lower extremities.
phenotype_term:
preferred_term: Lower limb spasticity
term:
id: HP:0002061
label: Lower limb spasticity
evidence:
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "adult-onset, and pure spastic paraplegia of unknown genetic cause"
explanation: The pure spastic paraplegia phenotype includes lower-limb spasticity.
- name: Progressive gait impairment
category: Neurological
description: >-
The disease is slowly progressive, leading to impairment or loss of ambulation
over 10 to 15 years, reflecting progressive spastic gait impairment from
corticospinal tract involvement.
phenotype_term:
preferred_term: Spastic gait
term:
id: HP:0002064
label: Spastic gait
clinical_course: PROGRESSIVE
evidence:
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The disease was slowly progressive, leading to impairment or loss of ambulation 10 to 15 years after the onset of symptoms."
explanation: Progressive spastic gait impairment leading to loss of ambulation.
- name: Lower limb hyperreflexia
category: Neurological
description: >-
Increased lower-limb deep tendon reflexes, a cardinal upper motor neuron sign of
corticospinal tract involvement in hereditary spastic paraplegia.
phenotype_term:
preferred_term: Lower limb hyperreflexia
term:
id: HP:0002395
label: Lower limb hyperreflexia
- name: Babinski sign
category: Neurological
description: >-
Extensor plantar response (Babinski sign) reflecting upper motor neuron
dysfunction and corticospinal tract damage, documented in affected family members
on neurological examination.
phenotype_term:
preferred_term: Babinski sign
term:
id: HP:0003487
label: Babinski sign
genetic:
- name: CPT1C pathogenic variant
gene_term:
preferred_term: CPT1C
term:
id: hgnc:18540
label: CPT1C
association: Causative
notes: >-
Heterozygous CPT1C c.109C>T (p.Arg37Cys) in exon 3 was identified by
whole-exome sequencing with linkage in a three-generation family; the variant
was absent from control databases and 712 additional control exomes, strictly
cosegregated with disease, and was predicted damaging. CPT1C encodes the
neuronal ER-localized isoform of carnitine palmitoyltransferase 1.
evidence:
- reference: PMID:25751282
reference_title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "In this study, we showed that the mutation Arg37Cys in the ER protein CPT1C causes a pure form of AD-HSP (SPG73)."
explanation: Identifies the causal CPT1C p.Arg37Cys variant for SPG73.
treatments:
- name: Supportive and symptomatic care
description: >-
No disease-modifying therapy exists; management is supportive, focused on
reducing lower-limb spasticity and maintaining mobility, as for other pure
hereditary spastic paraplegias.
treatment_term:
preferred_term: supportive care
term:
id: NCIT:C15747
label: Supportive Care
- name: Physical therapy
description: >-
Physiotherapy and stretching to manage spasticity, preserve range of motion,
and maintain ambulation.
therapeutic_modality: BEHAVIORAL
treatment_term:
preferred_term: physical therapy
term:
id: NCIT:C15302
label: Physical Therapy
- name: Antispasticity pharmacotherapy
description: >-
Symptomatic anti-spasticity agents (e.g., baclofen) are used to reduce
lower-limb spasticity in hereditary spastic paraplegia.
treatment_term:
preferred_term: Pharmacotherapy
term:
id: NCIT:C15986
label: Pharmacotherapy
therapeutic_agent:
- preferred_term: baclofen
term:
id: CHEBI:2972
label: baclofen
references:
- reference: PMID:25751282
title: "Mutation in CPT1C Associated With Pure Autosomal Dominant Spastic Paraplegia."
findings: []