COX16-related COX deficiency (mitochondrial complex IV deficiency nuclear type 22, MC4DN22) is an ultra-rare autosomal recessive nuclear form of isolated cytochrome c oxidase (COX, Complex IV) deficiency caused by biallelic loss-of-function variants in COX16. COX16 encodes a small mitochondrial transmembrane protein, facing the intermembrane space and highly expressed in skeletal and cardiac muscle, that acts as a Complex IV assembly factor in the copper-delivery route of the COX2 module: it interacts with newly synthesized COX2 and its copper-center-forming metallochaperones (SCO1, SCO2, COA6) and is implicated in CuA-site formation. Loss of COX16 prevents assembly of the COX2 subassembly module and causes complete loss of the holo-enzyme, producing an isolated Complex IV deficiency. The first reported patients (two unrelated cases homozygous for the nonsense variant c.244C>T, p.Arg82*) presented with hypertrophic cardiomyopathy, encephalopathy, severe fatal neonatal lactic acidosis, and liver dysfunction. The entry conforms to the conserved Complex IV assembly/biogenesis-deficiency mechanism, with the lesion localized to an assembly factor in the COX2 copper-delivery pathway rather than a structural subunit.
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name: COX16-Related COX Deficiency
category: Mendelian
creation_date: "2026-06-23T00:00:00Z"
synonyms:
- COX16 deficiency
- Mitochondrial complex IV deficiency, nuclear type 22
- MC4DN22
- COX16-related cytochrome c oxidase deficiency
description: >
COX16-related COX deficiency (mitochondrial complex IV deficiency nuclear
type 22, MC4DN22) is an ultra-rare autosomal recessive nuclear form of
isolated cytochrome c oxidase (COX, Complex IV) deficiency caused by biallelic
loss-of-function variants in COX16. COX16 encodes a small mitochondrial
transmembrane protein, facing the intermembrane space and highly expressed in
skeletal and cardiac muscle, that acts as a Complex IV assembly factor in the
copper-delivery route of the COX2 module: it interacts with newly synthesized
COX2 and its copper-center-forming metallochaperones (SCO1, SCO2, COA6) and is
implicated in CuA-site formation. Loss of COX16 prevents assembly of the COX2
subassembly module and causes complete loss of the holo-enzyme, producing an
isolated Complex IV deficiency. The first reported patients (two unrelated
cases homozygous for the nonsense variant c.244C>T, p.Arg82*) presented with
hypertrophic cardiomyopathy, encephalopathy, severe fatal neonatal lactic
acidosis, and liver dysfunction. The entry conforms to the conserved Complex
IV assembly/biogenesis-deficiency mechanism, with the lesion localized to an
assembly factor in the COX2 copper-delivery pathway rather than a structural
subunit.
disease_term:
preferred_term: COX16-related COX deficiency (MC4DN22)
term:
id: MONDO:0859160
label: mitochondrial complex IV deficiency, nuclear type 22
parents:
- Mitochondrial Disease
- Inborn Error of Metabolism
pathophysiology:
- name: COX16 Loss and Impaired COX2 Copper Delivery
conforms_to: "complex_iv_assembly_deficiency#Complex IV Biogenesis Failure"
description: >
Biallelic loss-of-function of COX16 removes a Complex IV assembly factor
that interacts with newly synthesized COX2 and its copper-center-forming
metallochaperones (SCO1, SCO2, COA6) and participates in copper delivery to
COX2 / CuA-site formation. Loss of COX16 blocks formation of the COX2
subassembly module and produces complete loss of the holo-complex IV, i.e.
failed Complex IV biogenesis with isolated Complex IV deficiency.
biological_processes:
- preferred_term: mitochondrial respiratory chain complex IV assembly
term:
id: GO:0033617
label: mitochondrial respiratory chain complex IV assembly
modifier: DECREASED
- preferred_term: copper ion delivery to COX2
term:
id: GO:0006825
label: copper ion transport
modifier: DECREASED
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: The absence of COX16 protein expression leads to a complete loss of the holo-complex IV, as detected by Western blot in patient fibroblasts
explanation: Loss of COX16 abolishes the assembled holo-enzyme in patient fibroblasts, i.e. failed Complex IV biogenesis.
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: Lentiviral transduction of patient fibroblasts with wild-type COX16 complementary DNA rescued complex IV biosynthesis
explanation: Re-expression of wild-type COX16 restores Complex IV biosynthesis, confirming COX16 loss as the direct molecular lesion.
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: OTHER
snippet: We hypothesize that COX16 could play a role in the copper delivery route of the COX2 module as part of the complex IV assembly
explanation: Localizes the COX16 lesion to the copper-delivery route of the COX2 assembly module.
- reference: PMID:29381136
reference_title: "COX16 promotes COX2 metallation and assembly during respiratory complex IV biogenesis."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: COX16, a protein required for cytochrome c oxidase assembly, interacts specifically with newly synthesized COX2 and its copper center-forming metallochaperones SCO1, SCO2, and COA6
explanation: Defines the molecular role of COX16 in COX2 metallation/assembly that is lost in disease.
- reference: PMID:29381136
reference_title: "COX16 promotes COX2 metallation and assembly during respiratory complex IV biogenesis."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: These findings implicate COX16 in CuA-site formation
explanation: COX16 is implicated in forming the copper CuA center of COX2, the step impaired by COX16 loss.
- reference: PMID:29355485
reference_title: "COX16 is required for assembly of cytochrome c oxidase in human cells and is involved in copper delivery to COX2."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: its ablation in HEK293 cells impairs COX assembly
explanation: Genetic ablation of COX16 in human cells impairs Complex IV assembly, supporting the assembly-factor role.
- reference: PMID:29355485
reference_title: "COX16 is required for assembly of cytochrome c oxidase in human cells and is involved in copper delivery to COX2."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: Its knockdown in C. elegans produces COX deficiency
explanation: COX16 knockdown in an animal model recapitulates COX deficiency, supporting conserved essentiality.
- reference: PMID:29355485
reference_title: "COX16 is required for assembly of cytochrome c oxidase in human cells and is involved in copper delivery to COX2."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: copper supplementation increases COX activity and restores normal steady state levels of COX subunits in COX16 knockout cells, indicating that, even in the absence of a canonical copper binding motif, COX16 could be involved in copper delivery to COX2
explanation: Copper rescue of COX16-null cells supports COX16's function in copper delivery to COX2.
downstream:
- target: Impaired Terminal Electron Transfer and ATP Synthesis
causal_link_type: DIRECT
description: An unassembled, COX16-deficient Complex IV cannot transfer electrons to oxygen, impairing oxidative ATP synthesis.
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: isolated complex IV deficiency. The absence of COX16 protein expression leads to a complete loss of the holo-complex IV
explanation: Failed COX16-dependent assembly produces complete loss of the holo-complex IV and an isolated Complex IV deficiency, the basis for impaired terminal electron transfer.
- name: Impaired Terminal Electron Transfer and ATP Synthesis
conforms_to: "complex_iv_assembly_deficiency#Impaired Terminal Electron Transfer and ATP Synthesis"
description: >
Deficient Complex IV blocks electron transfer from cytochrome c to oxygen and
the coupled proton pumping, collapsing oxidative ATP synthesis. High-energy
tissues — heart and brain — are preferentially injured, producing
hypertrophic cardiomyopathy and encephalopathy.
cell_types:
- preferred_term: cardiac muscle cell
term:
id: CL:0000746
label: cardiac muscle cell
- preferred_term: neuron
term:
id: CL:0000540
label: neuron
biological_processes:
- preferred_term: mitochondrial electron transport, cytochrome c to oxygen
term:
id: GO:0006123
label: mitochondrial electron transport, cytochrome c to oxygen
modifier: DECREASED
- preferred_term: ATP synthesis coupled electron transport
term:
id: GO:0042775
label: mitochondrial ATP synthesis coupled electron transport
modifier: DECREASED
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: hypertrophic cardiomyopathy, encephalopathy and severe fatal lactic acidosis, and isolated complex IV deficiency
explanation: Reduced Complex IV in these patients is the biochemical basis for impaired terminal electron transfer and the high-energy-tissue (cardiac, neural) phenotypes.
downstream:
- target: Lactic Acidosis and Metabolic Decompensation
causal_link_type: DIRECT
description: Impaired oxidative ATP synthesis forces anaerobic glycolysis, producing lactic acidosis.
- target: Hypertrophic Cardiomyopathy
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: Chronic bioenergetic failure in cardiomyocytes drives hypertrophic remodeling.
- target: Encephalopathy
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: Energy deficit in high-demand neural tissue produces encephalopathy.
- name: Lactic Acidosis and Metabolic Decompensation
conforms_to: "complex_iv_assembly_deficiency#Lactic Acidosis and Metabolic Decompensation"
description: >
The block in oxidative phosphorylation shifts pyruvate toward lactate,
producing severe, fatal neonatal lactic acidosis with systemic metabolic
decompensation and secondary liver dysfunction.
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: severe fatal lactic acidosis
explanation: Severe fatal lactic acidosis is a defining metabolic feature of the index patients.
downstream:
- target: Lactic Acidosis
causal_link_type: DIRECT
description: Accumulated lactate produces the measured lactic acidosis.
- target: Decreased Liver Function
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: Energy failure and metabolic decompensation impair hepatocyte function, producing liver dysfunction.
phenotypes:
- name: Hypertrophic Cardiomyopathy
description: Hypertrophic cardiomyopathy reported in the index COX16 patients.
phenotype_term:
preferred_term: Hypertrophic cardiomyopathy
term:
id: HP:0001639
label: Hypertrophic cardiomyopathy
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: two unrelated patients with the homozygous nonsense variant c.244C>T(p. Arg82*) in COX16 with hypertrophic cardiomyopathy, encephalopathy and severe fatal lactic acidosis, and isolated complex IV deficiency
explanation: The two index patients carrying the homozygous COX16 variant presented with hypertrophic cardiomyopathy.
- name: Encephalopathy
description: Encephalopathy as part of the COX16-related mitochondrial presentation.
phenotype_term:
preferred_term: Encephalopathy
term:
id: HP:0001298
label: Encephalopathy
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: hypertrophic cardiomyopathy, encephalopathy and severe fatal lactic acidosis
explanation: Encephalopathy is reported as a presenting feature of the index patients.
- name: Lactic Acidosis
description: Severe, fatal neonatal lactic acidosis.
phenotype_term:
preferred_term: Severe lactic acidosis
term:
id: HP:0003128
label: Lactic acidosis
severity: SEVERE
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: severe fatal lactic acidosis
explanation: Severe fatal lactic acidosis is a presenting feature of the index patients.
- name: Decreased Liver Function
description: Liver dysfunction accompanying the severe neonatal metabolic crisis.
phenotype_term:
preferred_term: Liver dysfunction
term:
id: HP:0001410
label: Decreased liver function
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: encephalopathy, cardiomyopathy, and liver dysfunction
explanation: Liver dysfunction is reported among the features of COX16 deficiency.
genetic:
- name: COX16 pathogenic variants causing MC4DN22
gene_term:
preferred_term: COX16
term:
id: hgnc:20213
label: COX16
inheritance:
- name: Autosomal recessive
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: two unrelated patients with the homozygous nonsense variant c.244C>T(p. Arg82*) in COX16
explanation: A homozygous nonsense variant in two unrelated patients is consistent with autosomal recessive inheritance.
variants:
- name: COX16 c.244C>T (p.Arg82*)
description: >
Homozygous nonsense variant abolishing COX16 protein expression and
holo-complex IV assembly. Identified in two unrelated patients and the
only pathogenic COX16 variant reported to date for MC4DN22.
gene:
preferred_term: COX16
term:
id: hgnc:20213
label: COX16
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: the homozygous nonsense variant c.244C>T(p. Arg82*) in COX16
explanation: Defines the causal COX16 nonsense variant.
features: >
Both reported patients are homozygous for the nonsense variant c.244C>T
(p.Arg82*) in COX16, which abolishes COX16 protein expression and the
assembled holo-complex IV.
evidence:
- reference: PMID:33169484
reference_title: "A novel variant in COX16 causes cytochrome c oxidase deficiency, severe fatal neonatal lactic acidosis, encephalopathy, cardiomyopathy, and liver dysfunction."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: the homozygous nonsense variant c.244C>T(p. Arg82*) in COX16
explanation: Defines the causal COX16 nonsense variant.
treatments:
- name: Supportive and Metabolic Care
description: >
No curative therapy exists; management is supportive, directed at the
metabolic decompensation and lactic acidosis, cardiac and neurologic
surveillance, and multidisciplinary care. The reported neonatal presentation
was fatal.
treatment_term:
preferred_term: supportive care
term:
id: MAXO:0000950
label: supportive care
notes: >
COX16-related disease is reported to date in two unrelated patients homozygous
for c.244C>T (p.Arg82*) (Wintjes et al., 2021, Hum Mutat; PMID:33169484). COX16
is an assembly factor in the copper-delivery route of the COX2 module rather
than a structural subunit; its biochemical signature is an isolated Complex IV
deficiency with complete loss of the holo-enzyme, rescued by wild-type COX16
re-expression. The molecular role of COX16 in COX2 metallation and CuA-site
formation is established by Aich et al. (2018, eLife; PMID:29381136) and Cerqua
et al. (2018, BBA Bioenergetics; PMID:29355485). MONDO:0859160 (MC4DN22) maps
to OMIM:619355; the COX16 gene is OMIM:618064 / hgnc:20213. Added as a member
of the Mitochondrial_Complex_IV_Deficiency grouping (issue #4239): this entry
conforms to the complex_iv_assembly_deficiency#Complex IV Biogenesis Failure
node, satisfying the grouping's NECESSARY_AND_SUFFICIENT module-conformance
criterion (the grouping's own evaluator flags it as a candidate member), and
MONDO:0859160 is an is-a descendant of the grouping's MONDO:0033885
nuclear-type anchor.