Biotinidase deficiency is an autosomal recessive disorder of biotin recycling caused by biallelic pathogenic variants in the BTD gene. Deficient biotinidase activity impairs cleavage of biocytin and biotinyl-peptides, leading to depletion of free biotin and secondary functional deficiency of biotin-dependent carboxylases (pyruvate carboxylase, propionyl-CoA carboxylase, 3-methylcrotonyl- CoA carboxylase, and acetyl-CoA carboxylase). This results in metabolic acidosis, organic aciduria, and multisystem injury predominantly affecting the nervous system, skin, eyes, and auditory system. Profound deficiency (<10% residual activity) and partial deficiency (10-30%) are distinguished biochemically. Lifelong oral biotin supplementation is highly effective and prevents symptoms when initiated early through newborn screening. Delayed diagnosis can lead to irreversible neurological damage, hearing loss, and optic atrophy.
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name: Biotinidase Deficiency
category: Mendelian
creation_date: '2025-06-12T20:16:27Z'
updated_date: '2026-05-21T03:52:18Z'
synonyms:
- BTD deficiency
- Biotinidase deficiency, profound
- Biotinidase deficiency, partial
- Late-onset multiple carboxylase deficiency
- Juvenile-onset multiple carboxylase deficiency
description: 'Biotinidase deficiency is an autosomal recessive disorder of biotin recycling caused by biallelic pathogenic variants in the BTD gene. Deficient biotinidase activity impairs cleavage of biocytin and biotinyl-peptides, leading to depletion of free biotin and secondary functional deficiency of biotin-dependent carboxylases (pyruvate carboxylase, propionyl-CoA carboxylase, 3-methylcrotonyl- CoA carboxylase, and acetyl-CoA carboxylase). This results in metabolic acidosis, organic aciduria, and multisystem injury predominantly affecting the nervous system, skin, eyes, and auditory system. Profound deficiency (<10% residual activity) and partial deficiency (10-30%) are distinguished biochemically. Lifelong oral biotin supplementation is highly effective and prevents symptoms when initiated early through newborn screening. Delayed diagnosis can lead to irreversible neurological damage, hearing loss, and optic atrophy.
'
disease_term:
preferred_term: biotinidase deficiency
term:
id: MONDO:0009665
label: biotinidase deficiency
parents:
- Metabolic Disease
- Inborn Error of Metabolism
prevalence:
- population: Newborn screening cohorts
percentage: 1 in 61,067
notes: >-
Newborn-screening studies place overall biotinidase deficiency incidence at
roughly 1 in 60,000 births. A Paraná screening cohort found 1 affected
infant in 62,500 births overall, with profound and partial deficiency each
occurring in 1 in 125,000 births.
evidence:
- reference: PMID:2314964
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The combined incidence of profound and partial deficiency was 1 case per 61,067 live births"
explanation: >-
This multicountry newborn-screening survey (~4.4 million newborns
screened across 12 countries) provides a commonly cited combined
incidence estimate for biotinidase deficiency.
- reference: PMID:9713119
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Screening of 125,000 infants born in Paraná State was carried out to establish the prevalence of biotinidase deficiency. A simple colorimetric procedure was used to detect two infants with biotinidase deficiency (1:62,500), one of them with profound deficiency (1:125,000) and the other with partial deficiency (1:125,000) of the enzyme."
explanation: >-
This newborn-screening study independently supports an incidence near 1 in
60,000 births and provides subtype-specific rates for profound and partial
deficiency.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "1-9 / 100 000 | Worldwide | Prevalence at birth | PMID:1779651"
explanation: Orphanet epidemiology data cites worldwide birth prevalence of 1-9 per 100,000 based on Wolf 1991 screening survey.
- reference: PMID:1779651
reference_title: "Worldwide survey of neonatal screening for biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The incidence of combined profound and partial deficiency is 1:60,089 newborns (1:49,500 to 1:73,100)"
explanation: Landmark worldwide screening survey of 8.5 million newborns establishing the 1:60,000 global incidence estimate.
pathophysiology:
- name: Impaired biotin recycling and secondary multiple carboxylase deficiency
description: 'Loss of biotinidase activity prevents efficient recycling of biotin from biocytin and biotinyl-peptides. This leads to depletion of free biotin and impaired biotinylation of apocarboxylases by holocarboxylase synthetase, resulting in functional deficiency of all four biotin-dependent carboxylases.
'
biological_processes:
- preferred_term: biotin metabolic process
term:
id: GO:0006768
label: biotin metabolic process
genes:
- preferred_term: BTD
term:
id: hgnc:1122
label: BTD
molecular_functions:
- preferred_term: biotinidase activity
term:
id: GO:0047708
label: biotinidase activity
modifier: DECREASED
chemical_entities:
- preferred_term: biotin
term:
id: CHEBI:15956
label: biotin
modifier: DECREASED
cell_types:
- preferred_term: hepatocyte
term:
id: CL:0000182
label: hepatocyte
cellular_components:
- preferred_term: mitochondrion
term:
id: GO:0005739
label: mitochondrion
evidence:
- reference: PMID:38928282
reference_title: "Biotin Homeostasis and Human Disorders: Recent Findings and Perspectives."
supports: SUPPORT
evidence_source: OTHER
snippet: Biotin status/homeostasis in human individuals depends on several factors, including efficiency/deficiency of the enzymes involved in biotin recycling within the human organism (biotinidase, holocarboxylase synthetase)
explanation: Directly supports the role of biotinidase in biotin recycling and its link to carboxylase function.
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: BTD deficiency may impair the activity of biotin-dependent carboxylases, and thus bring about a buildup of potentially toxic compounds in the body
explanation: Confirms that biotinidase deficiency leads to impaired carboxylase activity and toxic metabolite accumulation.
downstream:
- target: Disrupted intermediary metabolism and organic aciduria
description: Loss of biotin recycling functionally impairs biotin-dependent carboxylases, producing toxic metabolite accumulation.
causal_link_type: DIRECT
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: BTD deficiency may impair the activity of biotin-dependent carboxylases, and thus bring about a buildup of potentially toxic compounds in the body
explanation: This directly supports the biochemical cascade from BTD deficiency to multiple carboxylase dysfunction and metabolite accumulation.
- target: Decreased biotinidase activity
description: BTD pathogenic variation is reflected clinically by reduced serum biotinidase activity.
causal_link_type: DIRECT
evidence:
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Complete enzyme deficiency was identified in 19.8%, partial enzyme deficiency in 55.1%, and heterogenous enzyme deficiency in 9.7%
explanation: Cohort data support decreased biotinidase activity as the enzyme-level manifestation of BTD deficiency.
- name: Disrupted intermediary metabolism and organic aciduria
description: 'Functional loss of biotin-dependent carboxylases causes characteristic biochemical derangements including lactic acidosis (pyruvate carboxylase impairment), propionate and methylcitrate accumulation (propionyl-CoA carboxylase impairment), and 3-hydroxyisovalerate accumulation (3-methylcrotonyl-CoA carboxylase impairment).
'
biological_processes:
- preferred_term: gluconeogenesis
term:
id: GO:0006094
label: gluconeogenesis
- preferred_term: propionate catabolic process
term:
id: GO:0019543
label: propionate catabolic process
- preferred_term: leucine catabolic process
term:
id: GO:0006552
label: L-leucine catabolic process
molecular_functions:
- preferred_term: pyruvate carboxylase activity
term:
id: GO:0004736
label: pyruvate carboxylase activity
modifier: DECREASED
- preferred_term: propionyl-CoA carboxylase activity
term:
id: GO:0004658
label: propionyl-CoA carboxylase activity
modifier: DECREASED
- preferred_term: methylcrotonoyl-CoA carboxylase activity
term:
id: GO:0004485
label: methylcrotonoyl-CoA carboxylase activity
modifier: DECREASED
- preferred_term: acetyl-CoA carboxylase activity
term:
id: GO:0003989
label: acetyl-CoA carboxylase activity
modifier: DECREASED
cell_types:
- preferred_term: hepatocyte
term:
id: CL:0000182
label: hepatocyte
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: BTD deficiency may impair the activity of biotin-dependent carboxylases, and thus bring about a buildup of potentially toxic compounds in the body, primarily 3-hydroxyisovaleryl-carnitine in plasma as well as 3-hydroxyisovaleric acid in urine
explanation: Documents the specific metabolite accumulation pattern in biotinidase deficiency.
- reference: PMID:9350481
reference_title: "Multiple carboxylase deficiency: inherited and acquired disorders of biotin metabolism."
supports: SUPPORT
evidence_source: OTHER
snippet: Acquired biotin deficiency and the two known congenital disorders of biotin metabolism, biotinidase and holocarboxylase synthetase (HCS) deficiency, all lead to deficiency of the 4 biotin-dependent carboxylases, i.e. to multiple carboxylase deficiency (MCD).
explanation: Review evidence directly supports secondary deficiency of all four biotin-dependent carboxylases in biotinidase deficiency.
downstream:
- target: Central nervous system vulnerability and white matter injury
description: Toxic metabolite buildup and impaired carboxylase activity produce neurologic vulnerability.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
intermediate_mechanisms:
- Free biotin depletion impairs carboxylase activity needed for energy and organic-acid metabolism.
evidence:
- reference: PMID:36759144
reference_title: "Neuroimaging Features of Biotinidase Deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Resultant deficiency of free biotin leads to impaired activity of the enzyme carboxylase and related neurologic, dermatologic, and ocular symptoms
explanation: Neuroimaging evidence links free biotin deficiency and carboxylase impairment to neurologic manifestations.
- target: Dermatologic manifestations from systemic biotin depletion
description: Systemic biotin depletion and impaired fatty-acid metabolism affect skin and mucocutaneous tissues.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
intermediate_mechanisms:
- Biotin-dependent metabolic disruption affects rapidly renewing cutaneous tissues.
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%), auditory (26.9%) and respiratory system (17.8%)'
explanation: The systematic review quantifies skin involvement downstream of systemic biotinidase deficiency.
- target: 3-Hydroxyisovalerylcarnitine (C5-OH)
description: Secondary 3-methylcrotonyl-CoA carboxylase impairment raises plasma C5-OH.
causal_link_type: DIRECT
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: BTD deficiency may impair the activity of biotin-dependent carboxylases, and thus bring about a buildup of potentially toxic compounds in the body, primarily 3-hydroxyisovaleryl-carnitine in plasma
explanation: This directly identifies increased C5-OH downstream of impaired biotin-dependent carboxylase activity.
- target: 3-Hydroxyisovaleric acid
description: Secondary leucine-catabolism impairment raises urinary 3-hydroxyisovaleric acid.
causal_link_type: DIRECT
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: primarily 3-hydroxyisovaleryl-carnitine in plasma as well as 3-hydroxyisovaleric acid in urine
explanation: This directly identifies urinary 3-hydroxyisovaleric acid accumulation in BTD deficiency.
- target: Propionylcarnitine (C3)
description: Propionyl-CoA carboxylase impairment can elevate C3-acylcarnitine.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
intermediate_mechanisms:
- Biotin depletion impairs propionyl-CoA carboxylase activity.
evidence:
- reference: PMID:38928282
reference_title: "Biotin Homeostasis and Human Disorders: Recent Findings and Perspectives."
supports: PARTIAL
evidence_source: OTHER
snippet: Biotin status/homeostasis in human individuals depends on several factors, including efficiency/deficiency of the enzymes involved in biotin recycling within the human organism (biotinidase, holocarboxylase synthetase)
explanation: This supports the biotin-recycling defect underlying secondary carboxylase dysfunction, but does not directly name C3.
- target: Organic aciduria
description: Multiple carboxylase deficiency produces characteristic urinary organic acid abnormalities.
causal_link_type: DIRECT
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: characteristic abnormal organic acid metabolites were found in 57.1%
explanation: The systematic review directly supports organic-acid abnormalities in symptomatic biotinidase deficiency.
- target: Metabolic acidosis
description: Accumulation of organic acids and lactate manifests as metabolic acidosis.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
intermediate_mechanisms:
- Impaired carboxylase activity causes organic-acid and lactate accumulation.
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: metabolic acidosis was present in 42.4% of symptomatic individuals
explanation: Directly quantifies metabolic acidosis among symptomatic individuals.
- target: Metabolic ketoacidosis
description: Catabolic stress in multiple carboxylase deficiency can produce ketoacidosis.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
intermediate_mechanisms:
- Organic-acid accumulation and impaired intermediary metabolism worsen during catabolism.
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0005979 | Metabolic ketoacidosis | Very frequent (99-80%)"
explanation: Orphanet supports metabolic ketoacidosis as a very frequent manifestation of biotinidase deficiency.
- target: Hyperammonemia
description: Secondary organic-acid accumulation can disrupt nitrogen disposal and produce hyperammonemia.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
intermediate_mechanisms:
- Propionyl-CoA carboxylase impairment can secondarily inhibit urea-cycle flux.
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0001987 | Hyperammonemia | Frequent (79-30%)"
explanation: Orphanet supports hyperammonemia as a frequent metabolic manifestation.
- target: Failure to thrive
description: Chronic metabolic derangement and feeding difficulty impair growth.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Detailed clinical features included severe psychomotor retardation, hypotonia, as well as failure to thrive
explanation: Case evidence supports failure to thrive among systemic manifestations of profound biotinidase deficiency.
- target: Lethargy
description: Metabolic decompensation can present with lethargy.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0001254 | Lethargy | Occasional (29-5%)"
explanation: Orphanet supports lethargy as an occasional manifestation of biotinidase deficiency.
- target: Respiratory distress
description: Systemic metabolic decompensation can include respiratory distress.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0002098 | Respiratory distress | Occasional (29-5%)"
explanation: Orphanet supports respiratory distress as an occasional manifestation of biotinidase deficiency.
- target: Apnea
description: Respiratory involvement during systemic disease can include apnea.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0002104 | Apnea | Occasional (29-5%)"
explanation: Orphanet supports apnea as an occasional respiratory manifestation.
- target: Laryngeal stridor
description: Airway involvement can present as laryngeal stridor.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0006511 | Laryngeal stridor | Occasional (29-5%)"
explanation: Orphanet supports laryngeal stridor as an occasional manifestation.
- name: Central nervous system vulnerability and white matter injury
description: 'The CNS is particularly vulnerable in biotinidase deficiency. Neuropathologic changes include defective myelination, spongy white-matter changes, and involvement of specific neuroanatomical structures including fornices, brainstem, optic pathways, and spinal cord. Biotinidase localization to cerebellar Purkinje cells and auditory brainstem nuclei is consistent with frequent neurologic and auditory phenotypes.
'
biological_processes:
- preferred_term: myelination
term:
id: GO:0042552
label: myelination
cell_types:
- preferred_term: Purkinje cell
term:
id: CL:0000121
label: Purkinje cell
- preferred_term: oligodendrocyte
term:
id: CL:0000128
label: oligodendrocyte
locations:
- preferred_term: brain white matter
term:
id: UBERON:0003544
label: brain white matter
- preferred_term: cerebellum
term:
id: UBERON:0002037
label: cerebellum
evidence:
- reference: PMID:36759144
reference_title: "Neuroimaging Features of Biotinidase Deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Resultant deficiency of free biotin leads to impaired activity of the enzyme carboxylase and related neurologic, dermatologic, and ocular symptoms
explanation: Multicenter neuroimaging study documenting CNS involvement patterns in biotinidase deficiency.
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: The brain MRI at 12 months showed cerebellar hypoplasia and multiple foci of leukodystrophy
explanation: Case demonstrating cerebellar and white matter injury in profound biotinidase deficiency.
downstream:
- target: Brain imaging abnormality
description: White-matter, cerebellar, optic-pathway, and brainstem involvement manifest as abnormal brain imaging.
causal_link_type: DIRECT
evidence:
- reference: PMID:36759144
reference_title: "Neuroimaging Features of Biotinidase Deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: In this report comprising 14 patients from multiple centers, we demonstrate the MR imaging patterns of this disorder at various age groups
explanation: Multicenter imaging evidence directly supports brain MRI abnormalities.
- target: Seizures
description: CNS vulnerability manifests clinically with seizures.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0001250 | Seizure | Frequent (79-30%)"
explanation: Orphanet supports seizures as a frequent neurologic manifestation of biotinidase deficiency.
- target: Infantile spasms
description: Infantile spasms are a seizure phenotype within early CNS involvement.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0012469 | Infantile spasms | Occasional (29-5%)"
explanation: Orphanet supports infantile spasms as an occasional neurologic manifestation.
- target: Global developmental delay
description: Early CNS injury and metabolic vulnerability can impair development.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Detailed clinical features included severe psychomotor retardation, hypotonia, as well as failure to thrive
explanation: Psychomotor retardation supports developmental delay downstream of CNS involvement.
- target: Muscular hypotonia
description: CNS and motor pathway involvement can manifest with hypotonia.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Detailed clinical features included severe psychomotor retardation, hypotonia, as well as failure to thrive
explanation: Case evidence directly lists hypotonia among neurologic manifestations.
- target: Ataxia
description: Cerebellar involvement can manifest with ataxia.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
intermediate_mechanisms:
- Cerebellar hypoplasia and Purkinje-cell-region vulnerability disrupt motor coordination.
evidence:
- reference: PMID:36759144
reference_title: "Neuroimaging Features of Biotinidase Deficiency."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: Resultant deficiency of free biotin leads to impaired activity of the enzyme carboxylase and related neurologic, dermatologic, and ocular symptoms
explanation: The imaging study supports neurologic symptoms from carboxylase impairment; the edge uses the curated cerebellar vulnerability context.
- target: Intellectual disability
description: Delayed treatment can leave persistent cognitive deficits after CNS injury.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: the therapy failed to show any evident effects on poor feeding and intellectual disability
explanation: Case evidence supports intellectual disability as a persistent neurologic outcome.
- target: Spastic paraparesis
description: Spinal cord and white-matter involvement can manifest with spastic paraparesis.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0002313 | Spastic paraparesis | Occasional (29-5%)"
explanation: Orphanet supports spastic paraparesis as an occasional neurologic manifestation.
- target: Sensorineural hearing impairment
description: Auditory pathway vulnerability can produce sensorineural hearing impairment.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:39451125
reference_title: "A retrospective study on biotinidase deficiency: analysis of the Eastern Anatolia region patient cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Hearing loss (4 patients) and optic atrophy (1 patient) were mainly observed in patients with the c.38_delinsTCC mutation
explanation: Cohort evidence supports hearing loss in genetically severe biotinidase deficiency.
- target: Optic atrophy
description: Optic pathway involvement can manifest as optic atrophy.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:40190376
reference_title: "Biotinidase Deficiency Induced Optic Neuropathy: A Case Report and Literature Review."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Comprehensive ophthalmic examination revealed bilateral optic neuropathy. Laboratory testing showed a biotinidase level of <0.1
explanation: Case evidence supports optic neuropathy/atrophy in severe biotinidase deficiency.
- name: Dermatologic manifestations from systemic biotin depletion
description: 'Skin rash and alopecia result from disrupted biotin-dependent metabolism affecting rapidly dividing cutaneous tissues. Dermatologic features are among the most common presenting signs of biotinidase deficiency.
'
biological_processes:
- preferred_term: fatty acid biosynthetic process
term:
id: GO:0006633
label: fatty acid biosynthetic process
cell_types:
- preferred_term: keratinocyte
term:
id: CL:0000312
label: keratinocyte
locations:
- preferred_term: skin of body
term:
id: UBERON:0002097
label: skin of body
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%), auditory (26.9%) and respiratory system (17.8%)'
explanation: Quantifies skin involvement at 53.7% of symptomatic cases in the largest systematic review.
downstream:
- target: Skin rash
description: Cutaneous biotin-dependent metabolic disruption manifests as rash.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0000988 | Skin rash | Frequent (79-30%)"
explanation: Orphanet supports skin rash as a frequent cutaneous manifestation of biotinidase deficiency.
- target: Eczematoid dermatitis
description: Eczematoid dermatitis is a specific cutaneous manifestation of systemic biotin depletion.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0000964 | Eczematoid dermatitis | Occasional (29-5%)"
explanation: Orphanet supports eczematoid dermatitis as an occasional cutaneous manifestation.
- target: Alopecia
description: Impaired skin appendage metabolism can manifest with alopecia.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0001596 | Alopecia | Occasional (29-5%)"
explanation: Orphanet supports alopecia as an occasional manifestation.
- target: Recurrent fungal infections
description: Mucocutaneous vulnerability can manifest as recurrent fungal infections.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0002841 | Recurrent fungal infections | Occasional (29-5%)"
explanation: Orphanet supports recurrent fungal infections as an occasional mucocutaneous manifestation.
- target: Conjunctivitis
description: Ocular surface involvement can manifest as conjunctivitis.
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0000509 | Conjunctivitis | Occasional (29-5%)"
explanation: Orphanet supports conjunctivitis as an occasional ocular manifestation.
phenotypes:
- name: Seizures
frequency: FREQUENT
description: 'Seizures are one of the most common neurological manifestations, occurring as part of the nervous system involvement seen in 67.2% of symptomatic cases. Seizure types may vary and can be the presenting symptom.
'
phenotype_term:
preferred_term: Seizure
term:
id: HP:0001250
label: Seizure
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%), auditory (26.9%) and respiratory system (17.8%)'
explanation: Nervous system involvement at 67.2% supports seizures as a frequent neurological phenotype.
- name: Global developmental delay
frequency: OCCASIONAL
description: 'Delayed achievement of developmental milestones occurs in untreated or late-diagnosed biotinidase deficiency, reflecting CNS injury from chronic biotin depletion.
'
phenotype_term:
preferred_term: Global developmental delay
term:
id: HP:0001263
label: Global developmental delay
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Detailed clinical features included severe psychomotor retardation, hypotonia, as well as failure to thrive
explanation: Case report documents severe psychomotor retardation in a child with profound biotinidase deficiency.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0001263 | Global developmental delay | Occasional (29-5%)"
explanation: Orphanet classifies global developmental delay as occasional in biotinidase deficiency.
- name: Muscular hypotonia
frequency: FREQUENT
description: 'Hypotonia is a common early neurological finding in symptomatic biotinidase deficiency, often presenting before seizures or developmental concerns.
'
phenotype_term:
preferred_term: Hypotonia
term:
id: HP:0001252
label: Hypotonia
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Detailed clinical features included severe psychomotor retardation, hypotonia, as well as failure to thrive
explanation: Case report documents hypotonia as a prominent feature in biotinidase deficiency.
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%)'
explanation: Nervous system involvement at 67.2% in the systematic review supports hypotonia as a frequent neurological manifestation.
- name: Alopecia
frequency: OCCASIONAL
description: 'Hair loss, often patchy or diffuse, is one of the classic dermatologic features of biotinidase deficiency, reflecting impaired biotin-dependent metabolism in skin appendages.
'
phenotype_term:
preferred_term: Alopecia
term:
id: HP:0001596
label: Alopecia
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%), auditory (26.9%) and respiratory system (17.8%)'
explanation: Skin involvement at 53.7% includes alopecia; Orphanet classifies alopecia specifically as occasional.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0001596 | Alopecia | Occasional (29-5%)"
explanation: Orphanet classifies alopecia as occasional in biotinidase deficiency.
- name: Skin rash
frequency: FREQUENT
description: 'Eczematous or seborrheic dermatitis is a characteristic cutaneous feature, often involving perioral and periorbital regions.
'
phenotype_term:
preferred_term: Skin rash
term:
id: HP:0000988
label: Skin rash
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%)'
explanation: Skin involvement at 53.7% supports dermatitis as a frequent phenotype.
- name: Sensorineural hearing impairment
frequency: FREQUENT
description: 'Sensorineural hearing loss is one of the most clinically significant complications, occurring in approximately 26.9% of symptomatic cases overall but classified as frequent (79-30%) by Orphanet when considering all severity levels. It can be irreversible once established and is attributed to auditory brainstem involvement. Early biotin treatment may prevent onset but cannot reverse established hearing loss.
'
phenotype_term:
preferred_term: Sensorineural hearing impairment
term:
id: HP:0000407
label: Sensorineural hearing impairment
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%), auditory (26.9%) and respiratory system (17.8%)'
explanation: Auditory involvement at 26.9% supports sensorineural hearing impairment as a significant phenotype.
- reference: PMID:39451125
reference_title: "A retrospective study on biotinidase deficiency: analysis of the Eastern Anatolia region patient cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Hearing loss (4 patients) and optic atrophy (1 patient) were mainly observed in patients with the c.38_delinsTCC mutation
explanation: Documents hearing loss in a Turkish cohort and links it to specific BTD variants.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0000407 | Sensorineural hearing impairment | Frequent (79-30%)"
explanation: Orphanet classifies sensorineural hearing impairment as frequent in biotinidase deficiency.
- name: Optic atrophy
frequency: OCCASIONAL
description: 'Optic atrophy occurs in a subset of symptomatic cases. Early treatment may halt or reverse the disease process, but delayed diagnosis can result in permanent vision loss.
'
phenotype_term:
preferred_term: Optic atrophy
term:
id: HP:0000648
label: Optic atrophy
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%), auditory (26.9%)'
explanation: Eye involvement at 34.4% includes optic atrophy; Orphanet classifies optic atrophy specifically as occasional.
- reference: PMID:40190376
reference_title: "Biotinidase Deficiency Induced Optic Neuropathy: A Case Report and Literature Review."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Comprehensive ophthalmic examination revealed bilateral optic neuropathy. Laboratory testing showed a biotinidase level of <0.1
explanation: Case report demonstrates bilateral optic neuropathy with improvement after biotin supplementation.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0000648 | Optic atrophy | Occasional (29-5%)"
explanation: Orphanet classifies optic atrophy as occasional in biotinidase deficiency.
- name: Ataxia
frequency: OCCASIONAL
description: 'Cerebellar ataxia can occur in biotinidase deficiency, consistent with cerebellar involvement demonstrated on neuroimaging.
'
phenotype_term:
preferred_term: Ataxia
term:
id: HP:0001251
label: Ataxia
evidence:
- reference: PMID:36759144
reference_title: "Neuroimaging Features of Biotinidase Deficiency."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: Resultant deficiency of free biotin leads to impaired activity of the enzyme carboxylase and related neurologic, dermatologic, and ocular symptoms
explanation: Neuroimaging study documents cerebellar and brainstem involvement consistent with ataxia.
- name: Metabolic acidosis
frequency: FREQUENT
description: 'Metabolic acidosis with lactic acidosis occurs during metabolic decompensation, reflecting impaired pyruvate carboxylase activity and disrupted energy metabolism.
'
phenotype_term:
preferred_term: Metabolic acidosis
term:
id: HP:0001942
label: Metabolic acidosis
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: metabolic acidosis was present in 42.4% of symptomatic individuals
explanation: Directly quantifies metabolic acidosis frequency at 42.4% in the 1113-case systematic review.
- name: Respiratory distress
frequency: OCCASIONAL
description: 'Respiratory distress is an occasional respiratory manifestation of symptomatic biotinidase deficiency and may accompany metabolic decompensation in infants and children.
'
phenotype_term:
preferred_term: Respiratory distress
term:
id: HP:0002098
label: Respiratory distress
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0002098 | Respiratory distress | Occasional (29-5%)"
explanation: Orphanet classifies respiratory distress as occasional in biotinidase deficiency.
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%), auditory (26.9%) and respiratory system (17.8%)'
explanation: Respiratory system involvement at 17.8% supports respiratory involvement broadly; Orphanet provides the specific respiratory distress term.
- name: Intellectual disability
frequency: OCCASIONAL
description: 'Intellectual disability can result from delayed diagnosis and treatment. Once established, cognitive deficits may be irreversible despite biotin therapy.
'
phenotype_term:
preferred_term: Intellectual disability
term:
id: HP:0001249
label: Intellectual disability
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: the therapy failed to show any evident effects on poor feeding and intellectual disability
explanation: Case report demonstrates that intellectual disability may be irreversible once established despite biotin treatment.
- name: Failure to thrive
frequency: OCCASIONAL
description: 'Poor growth and failure to thrive occur in symptomatic children due to metabolic derangement and feeding difficulties.
'
phenotype_term:
preferred_term: Failure to thrive
term:
id: HP:0001508
label: Failure to thrive
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Detailed clinical features included severe psychomotor retardation, hypotonia, as well as failure to thrive
explanation: Case report documents failure to thrive as a clinical feature of profound biotinidase deficiency.
- name: Spastic paraparesis
frequency: OCCASIONAL
description: 'Myelopathy with spastic paraparesis has been reported in severe or late-diagnosed cases, consistent with spinal cord involvement on neuroimaging.
'
phenotype_term:
preferred_term: Spastic paraparesis
term:
id: HP:0002313
label: Spastic paraparesis
evidence:
- reference: PMID:36759144
reference_title: "Neuroimaging Features of Biotinidase Deficiency."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: In this report comprising 14 patients from multiple centers, we demonstrate the MR imaging patterns of this disorder at various age groups
explanation: Neuroimaging series supports neurologic involvement but does not directly name spastic paraparesis.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0002313 | Spastic paraparesis | Occasional (29-5%)"
explanation: Orphanet classifies spastic paraparesis as occasional in biotinidase deficiency.
- name: Hyperammonemia
frequency: FREQUENT
description: 'Elevated blood ammonia levels occur during metabolic decompensation. The mechanism involves propionyl-CoA carboxylase impairment leading to propionyl-CoA accumulation, which inhibits N-acetylglutamate synthase (NAGS), impairing carbamyl phosphate synthetase 1 (CPS1) and thereby disrupting the urea cycle. Hyperammonemia can contribute to encephalopathy.
'
phenotype_term:
preferred_term: Hyperammonemia
term:
id: HP:0001987
label: Hyperammonemia
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0001987 | Hyperammonemia | Frequent (79-30%)"
explanation: Orphanet classifies hyperammonemia as frequent in biotinidase deficiency.
- name: Organic aciduria
frequency: VERY_FREQUENT
description: 'Elevated urinary organic acids, including 3-hydroxyisovaleric acid, 3-methylcrotonylglycine, methylcitrate, and lactate, are characteristic metabolic markers reflecting impaired biotin-dependent carboxylase function.
'
phenotype_term:
preferred_term: Organic aciduria
term:
id: HP:0001992
label: Organic aciduria
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: characteristic abnormal organic acid metabolites were found in 57.1%
explanation: Systematic review found organic aciduria in 57.1% of symptomatic cases when tested; frequency is VERY_FREQUENT per Orphanet, reflecting expected biochemical abnormality in untreated disease.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0001992 | Organic aciduria | Very frequent (99-80%)"
explanation: Orphanet is the authoritative frequency source here; the lower PMID figure reflects incomplete metabolic workups in a heterogeneous cohort.
- name: Metabolic ketoacidosis
frequency: VERY_FREQUENT
description: 'Ketoacidosis results from impaired carboxylase-dependent intermediary metabolism, particularly during catabolic stress. It is one of the most consistent metabolic findings in untreated biotinidase deficiency.
'
phenotype_term:
preferred_term: Metabolic ketoacidosis
term:
id: HP:0005979
label: Metabolic ketoacidosis
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: metabolic acidosis was present in 42.4% of symptomatic individuals
explanation: The systematic review supports metabolic acidosis broadly; Orphanet provides the specific metabolic ketoacidosis support.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0005979 | Metabolic ketoacidosis | Very frequent (99-80%)"
explanation: Orphanet classifies metabolic ketoacidosis as very frequent in biotinidase deficiency.
- name: Eczematoid dermatitis
frequency: OCCASIONAL
description: 'Eczematous or seborrheic dermatitis affecting perioral, periorbital, and diaper regions is a characteristic cutaneous finding distinct from generalized skin rash.
'
phenotype_term:
preferred_term: Eczematoid dermatitis
term:
id: HP:0000964
label: Eczematoid dermatitis
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%)'
explanation: Skin involvement at 53.7% includes eczematoid dermatitis as a specific presentation.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0000964 | Eczematoid dermatitis | Occasional (29-5%)"
explanation: Orphanet classifies eczematoid dermatitis as occasional in biotinidase deficiency.
- name: Lethargy
frequency: OCCASIONAL
description: 'Lethargy and decreased arousal can occur during metabolic decompensation or as part of progressive encephalopathy in untreated cases.
'
phenotype_term:
preferred_term: Lethargy
term:
id: HP:0001254
label: Lethargy
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0001254 | Lethargy | Occasional (29-5%)"
explanation: Orphanet classifies lethargy as occasional in biotinidase deficiency.
- name: Apnea
frequency: OCCASIONAL
description: 'Apneic episodes occur as part of respiratory system involvement, particularly in neonatal and early childhood-onset presentations.
'
phenotype_term:
preferred_term: Apnea
term:
id: HP:0002104
label: Apnea
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%), auditory (26.9%) and respiratory system (17.8%)'
explanation: Respiratory system involvement at 17.8% includes apneic episodes.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0002104 | Apnea | Occasional (29-5%)"
explanation: Orphanet classifies apnea as occasional in biotinidase deficiency.
- name: Laryngeal stridor
frequency: OCCASIONAL
description: 'Stridor from laryngeal involvement can be a presenting respiratory symptom, particularly in infants with biotinidase deficiency.
'
phenotype_term:
preferred_term: Laryngeal stridor
term:
id: HP:0006511
label: Laryngeal stridor
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0006511 | Laryngeal stridor | Occasional (29-5%)"
explanation: Orphanet classifies laryngeal stridor as occasional in biotinidase deficiency.
- name: Recurrent fungal infections
frequency: OCCASIONAL
description: 'Immune dysfunction in biotinidase deficiency manifests as susceptibility to fungal and candidal infections, likely reflecting impaired T-cell and B-cell function secondary to biotin depletion.
'
phenotype_term:
preferred_term: Recurrent fungal infections
term:
id: HP:0002841
label: Recurrent fungal infections
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0002841 | Recurrent fungal infections | Occasional (29-5%)"
explanation: Orphanet classifies recurrent fungal infections as occasional in biotinidase deficiency.
- name: Conjunctivitis
frequency: OCCASIONAL
description: 'Conjunctivitis is among the ocular manifestations of biotinidase deficiency, contributing to the 34.4% eye involvement rate documented in symptomatic cases.
'
phenotype_term:
preferred_term: Conjunctivitis
term:
id: HP:0000509
label: Conjunctivitis
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%)'
explanation: Eye involvement at 34.4% includes conjunctivitis as a specific presentation.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0000509 | Conjunctivitis | Occasional (29-5%)"
explanation: Orphanet classifies conjunctivitis as occasional in biotinidase deficiency.
- name: Brain imaging abnormality
frequency: FREQUENT
description: 'MRI abnormalities including white matter changes, cerebellar atrophy, and involvement of optic pathways and brainstem are characteristic neuroimaging findings in symptomatic biotinidase deficiency.
'
phenotype_term:
preferred_term: Brain imaging abnormality
term:
id: HP:0410263
label: Brain imaging abnormality
evidence:
- reference: PMID:36759144
reference_title: "Neuroimaging Features of Biotinidase Deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: In this report comprising 14 patients from multiple centers, we demonstrate the MR imaging patterns of this disorder at various age groups
explanation: Multicenter neuroimaging study documenting characteristic brain MRI patterns.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0410263 | Brain imaging abnormality | Frequent (79-30%)"
explanation: Orphanet classifies brain imaging abnormality as frequent in biotinidase deficiency.
- name: Infantile spasms
frequency: OCCASIONAL
description: 'Infantile spasms (West syndrome) have been reported as a seizure type in neonatal and early infantile-onset biotinidase deficiency presentations.
'
phenotype_term:
preferred_term: Infantile spasms
term:
id: HP:0012469
label: Infantile spasms
evidence:
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0012469 | Infantile spasms | Occasional (29-5%)"
explanation: Orphanet classifies infantile spasms as occasional in biotinidase deficiency.
- name: Decreased biotinidase activity
frequency: VERY_FREQUENT
description: 'Reduced serum biotinidase enzyme activity is the hallmark diagnostic marker. Profound deficiency is defined as less than 10% of mean normal activity and partial deficiency as 10-30%.
'
phenotype_term:
preferred_term: Decreased biotinidase activity
term:
id: HP:0410145
label: Decreased circulating biotinidase concentration
evidence:
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Complete enzyme deficiency was identified in 19.8%, partial enzyme deficiency in 55.1%, and heterogenous enzyme deficiency in 9.7%
explanation: Large cohort quantifies the distribution of enzyme deficiency severity categories.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "HP:0410145 | Decreased biotinidase activity | Very frequent (99-80%)"
explanation: Orphanet classifies decreased biotinidase activity as very frequent (diagnostic hallmark).
biochemical:
- name: 3-Hydroxyisovalerylcarnitine (C5-OH)
presence: INCREASED
context: 'Elevated C5-OH acylcarnitine is a characteristic plasma marker of impaired leucine catabolism via 3-methylcrotonyl-CoA carboxylase deficiency. Detectable on newborn screening acylcarnitine profiles.
'
readouts:
- target: Disrupted intermediary metabolism and organic aciduria
relationship: READOUT_OF
direction: POSITIVE
endpoint_context: DIAGNOSTIC
interpretation: Elevated C5-OH reports secondary multiple-carboxylase dysfunction and the leucine-catabolism branch of the metabolic block.
evidence:
- reference: PMID:33572391
reference_title: "Partial Biotinidase Deficiency Revealed Imbalances in Acylcarnitines Profile at Tandem Mass Spectrometry Newborn Screening."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: increased levels of C5OH may be linked to 3-methylcrotonyl-CoA carboxylase activity
explanation: This human newborn-screening report explicitly links C5OH elevation to the 3-methylcrotonyl-CoA carboxylase branch affected by BTD deficiency.
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: BTD deficiency may impair the activity of biotin-dependent carboxylases, and thus bring about a buildup of potentially toxic compounds in the body, primarily 3-hydroxyisovaleryl-carnitine in plasma
explanation: Directly identifies elevated C5-OH as a primary plasma marker.
- name: 3-Hydroxyisovaleric acid
presence: INCREASED
context: 'Elevated urinary 3-hydroxyisovaleric acid is a characteristic organic acid marker reflecting impaired leucine catabolism via 3-methylcrotonyl-CoA carboxylase.
'
readouts:
- target: Disrupted intermediary metabolism and organic aciduria
relationship: READOUT_OF
direction: POSITIVE
endpoint_context: DIAGNOSTIC
interpretation: Elevated urinary 3-hydroxyisovaleric acid reports impaired 3-methylcrotonyl-CoA carboxylase-dependent leucine catabolism.
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: primarily 3-hydroxyisovaleryl-carnitine in plasma as well as 3-hydroxyisovaleric acid in urine
explanation: This case report directly identifies urinary 3-hydroxyisovaleric acid accumulation downstream of impaired BTD-dependent carboxylase function.
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: primarily 3-hydroxyisovaleryl-carnitine in plasma as well as 3-hydroxyisovaleric acid in urine
explanation: Directly identifies elevated urinary 3-hydroxyisovaleric acid as a characteristic marker.
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: characteristic abnormal organic acid metabolites were found in 57.1%
explanation: Confirms organic acid abnormalities in the majority of symptomatic cases.
- name: Propionylcarnitine (C3)
presence: INCREASED
context: 'Elevated C3-acylcarnitine reflects propionyl-CoA carboxylase dysfunction in the setting of secondary multiple carboxylase deficiency.
'
readouts:
- target: Disrupted intermediary metabolism and organic aciduria
relationship: READOUT_OF
direction: POSITIVE
endpoint_context: DIAGNOSTIC
interpretation: Elevated C3 reports the propionyl-CoA carboxylase branch of secondary multiple-carboxylase dysfunction.
evidence:
- reference: PMID:33572391
reference_title: "Partial Biotinidase Deficiency Revealed Imbalances in Acylcarnitines Profile at Tandem Mass Spectrometry Newborn Screening."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: mildly elevated C3 levels may reflect propionyl-CoA carboxylase deficiency
explanation: This human newborn-screening report directly links C3 elevation to propionyl-CoA carboxylase deficiency in the BTD deficiency metabolic context.
evidence:
- reference: PMID:33572391
reference_title: "Partial Biotinidase Deficiency Revealed Imbalances in Acylcarnitines Profile at Tandem Mass Spectrometry Newborn Screening."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: mildly elevated C3 levels may reflect propionyl-CoA carboxylase deficiency
explanation: Directly supports C3 elevation as a marker of the propionyl-CoA carboxylase branch in biotinidase deficiency.
- reference: PMID:38928282
reference_title: "Biotin Homeostasis and Human Disorders: Recent Findings and Perspectives."
supports: PARTIAL
evidence_source: OTHER
snippet: Biotin status/homeostasis in human individuals depends on several factors, including efficiency/deficiency of the enzymes involved in biotin recycling within the human organism (biotinidase, holocarboxylase synthetase)
explanation: Review supports impaired biotin recycling and downstream carboxylase dysfunction, but does not directly name C3 propionylcarnitine.
- name: Lactate
presence: INCREASED
context: 'Lactic acidosis results from pyruvate carboxylase impairment. Brain lactate may be detectable by magnetic resonance spectroscopy.
'
readouts:
- target: Disrupted intermediary metabolism and organic aciduria
relationship: READOUT_OF
direction: POSITIVE
endpoint_context: DIAGNOSTIC
interpretation: Lactate elevation reports impaired pyruvate carboxylase-dependent intermediary metabolism and lactic-acidosis risk.
evidence:
- reference: PMID:9427142
reference_title: "Cerebral metabolic changes in biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Lactate, pyruvate and 3-hydroxyisovaleric acid as metabolic disease markers were measured in blood, cerebrospinal fluid and brain tissue by biochemical analyses or localized magnetic resonance proton spectroscopy.
explanation: Human metabolic imaging and biochemical measurements identify lactate as a disease marker in biotinidase deficiency.
evidence:
- reference: PMID:9427142
reference_title: "Cerebral metabolic changes in biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Lactate, pyruvate and 3-hydroxyisovaleric acid as metabolic disease markers were measured in blood, cerebrospinal fluid and brain tissue by biochemical analyses or localized magnetic resonance proton spectroscopy.
explanation: Directly supports lactate as a biochemical disease marker in biotinidase deficiency.
- reference: PMID:3736876
reference_title: "Biotinidase deficiency: accumulation of lactate in the brain and response to physiologic doses of biotin."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: this disorder who had high CSF content of lactate that could have contributed to the clinical disorder
explanation: Classic patient report supports increased CSF lactate in biotinidase deficiency.
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: metabolic acidosis was present in 42.4% of symptomatic individuals
explanation: Metabolic acidosis in biotinidase deficiency includes lactic acidosis from pyruvate carboxylase dysfunction.
- name: Biotinidase enzyme activity
presence: DECREASED
context: 'Reduced serum biotinidase enzyme activity is the definitive diagnostic marker. Profound deficiency is defined as less than 10% of mean normal activity and partial deficiency as 10-30%.
'
readouts:
- target: Impaired biotin recycling and secondary multiple carboxylase deficiency
relationship: READOUT_OF
direction: NEGATIVE
endpoint_context: DIAGNOSTIC
interpretation: Reduced biotinidase activity directly reports the proximal BTD enzyme defect that impairs biotin recycling.
evidence:
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Complete enzyme deficiency was identified in 19.8%, partial enzyme deficiency in 55.1%, and heterogenous enzyme deficiency in 9.7%
explanation: Cohort enzyme-activity data support reduced biotinidase activity as the diagnostic readout of the proximal mechanism.
evidence:
- reference: PMID:40190376
reference_title: "Biotinidase Deficiency Induced Optic Neuropathy: A Case Report and Literature Review."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Laboratory testing showed a biotinidase level of <0.1 (normal, 5.5-10 nmol/min/ml)
explanation: Case report documents severely reduced biotinidase activity confirming the diagnosis.
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Complete enzyme deficiency was identified in 19.8%, partial enzyme deficiency in 55.1%, and heterogenous enzyme deficiency in 9.7%
explanation: Large cohort quantifies the distribution of enzyme deficiency severity categories.
genetic:
- name: BTD gene variants causing biotinidase deficiency
gene_term:
preferred_term: BTD
term:
id: hgnc:1122
label: BTD
inheritance:
- name: Autosomal recessive
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Biotinidase deficiency (BD) is an autosomal recessively inherited disorder that was first described in 1982
explanation: Definitive statement of autosomal recessive inheritance in the landmark systematic review.
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Biotinidase (BTD) deficiency (OMIM 253260) is an autosomal recessively inherited metabolic disorder
explanation: Case report confirms autosomal recessive inheritance pattern.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "Autosomal recessive"
explanation: Orphanet confirms autosomal recessive inheritance for biotinidase deficiency.
variants:
- name: c.1270G>C (p.Asp424His)
description: 'The most common BTD variant worldwide. Associated predominantly with partial biotinidase deficiency when homozygous. This variant is often also written as p.Asp444His when full-length protein numbering is used. Biotinidase enzyme activity is above 30% in 97.3% of patients with homozygous p.Asp424His.
'
evidence:
- reference: PMID:39451125
reference_title: "A retrospective study on biotinidase deficiency: analysis of the Eastern Anatolia region patient cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: the most frequent variant was c.1270G > C | p.Asp424His. Biotinidase enzyme activity was above 30% in 97.3% of patients with a homozygous p.D424His mutation
explanation: Identifies D424H as the most frequent variant with characterization of enzyme activity levels.
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: The most common pathogenic variants were c.1270G > C (p.Asp424His), c.410G > A (p.Arg137His), and c.38_44delGCGCTGinsTCC (p.Cys13Phefs*36) in BTD gene
explanation: Confirms D424H as the most common variant in a large Turkish cohort.
- name: c.410G>A (p.Arg137His)
description: 'Associated with profound enzyme deficiency. More commonly observed in patients with neurological symptoms.
'
evidence:
- reference: PMID:39451125
reference_title: "A retrospective study on biotinidase deficiency: analysis of the Eastern Anatolia region patient cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: The mutations that caused the most significant decrease in enzyme activity were c.410G > A p.Arg137His, c.38_delinsTCC p.Cys13phefs*36, and c.1535C > T p.Thr512Met
explanation: Identifies R137H as causing significant enzyme activity reduction.
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: The c.410G > A and c.38_44delGCGCTGinsTCC variants were more common in the patients with neurological symptoms
explanation: Links R137H variant to neurological presentation.
- name: c.38_44delGCGCTGinsTCC (p.Cys13Phefs*36)
description: 'Frameshift variant associated with profound enzyme deficiency and severe phenotype including hearing loss and optic atrophy.
'
evidence:
- reference: PMID:39451125
reference_title: "A retrospective study on biotinidase deficiency: analysis of the Eastern Anatolia region patient cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Hearing loss (4 patients) and optic atrophy (1 patient) were mainly observed in patients with the c.38_delinsTCC mutation (homozygous or heterozygous)
explanation: Links this frameshift variant to severe sensory complications.
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: The c.410G > A and c.38_44delGCGCTGinsTCC variants were more common in the patients with neurological symptoms
explanation: Confirms association of this variant with neurological symptoms in a large cohort.
features: 'Biallelic pathogenic variants in BTD (chromosome 3p25.1) reduce biotinidase enzyme activity. Over 294 pathogenic variants have been identified. Severity correlates with residual enzyme activity: profound deficiency (<10% activity) and partial deficiency (10-30% activity). Genotype-phenotype correlations show that specific variants predict severity, with c.1270G>C associated with milder partial deficiency and c.410G>A and frameshift variants associated with profound deficiency and neurological complications.
'
evidence:
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Two hundred forty-seven cases were included in the study who were admitted to the Department of Pediatric Metabolism
explanation: Large cohort study providing comprehensive genotype-phenotype correlations in biotinidase deficiency.
- reference: PMID:39451125
reference_title: "A retrospective study on biotinidase deficiency: analysis of the Eastern Anatolia region patient cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: This study provides a detailed analysis of genetic diversity and clinical presentation in biotinidase deficiency cases in Eastern Anatolia, demonstrating the efficacy of biotin treatment
explanation: Regional cohort study demonstrating genetic diversity and variant-phenotype relationships.
- reference: ORPHA:79241
supports: SUPPORT
snippet: "BTD | biotinidase | hgnc:1122 | Disease-causing germline mutation(s) in"
explanation: Orphanet confirms BTD as the disease-causing gene for biotinidase deficiency.
- name: BTD
gene_term:
preferred_term: BTD
term:
id: hgnc:1122
label: BTD
association: Pathogenic Variants
evidence:
- reference: CGGV:assertion_847f7f2b-575f-4a90-bf02-179d464e4841-2020-02-10T180000.000Z
reference_title: "BTD / biotinidase deficiency (Definitive)"
supports: SUPPORT
evidence_source: OTHER
snippet: "BTD | HGNC:1122 | biotinidase deficiency | MONDO:0009665 | AR | Definitive"
explanation: ClinGen classifies the BTD-biotinidase deficiency gene-disease relationship as definitive with autosomal recessive inheritance.
treatments:
- name: Oral biotin supplementation
description: 'Lifelong oral free biotin is the definitive disease-modifying therapy for biotinidase deficiency. Recommended doses are 5-20 mg daily for profound deficiency and 2.5-10 mg for partial deficiency. Biotin treatment led to clinical stability or improvement in 89.2% of individuals in a systematic review. Early treatment can prevent all symptoms.
'
treatment_term:
preferred_term: nutritional supplementation
term:
id: MAXO:0000106
label: nutritional supplementation
therapeutic_agent:
- preferred_term: biotin
term:
id: CHEBI:15956
label: biotin
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Biotin treatment led to clinical stability or improvement in 89.2% of individuals. 1.6% of reported individuals with BD died due to non-availability of treatment or late diagnosis
explanation: Systematic review of 1113 cases demonstrating high efficacy of biotin treatment.
- reference: PMID:40190376
reference_title: "Biotinidase Deficiency Induced Optic Neuropathy: A Case Report and Literature Review."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: The patient was treated with oral biotin supplementation with improvement in her visual function
explanation: Case demonstrating biotin supplementation improving visual function in an adult patient.
target_mechanisms:
- target: Impaired biotin recycling and secondary multiple carboxylase deficiency
treatment_effect: BYPASSES
description: Pharmacologic free biotin supplementation bypasses defective biotin recycling and restores biotin availability for carboxylase biotinylation.
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Biotin treatment led to clinical stability or improvement in 89.2% of individuals.
explanation: Treatment-response evidence supports free biotin supplementation as the disease-modifying intervention.
- target: Disrupted intermediary metabolism and organic aciduria
treatment_effect: RESTORES
description: Providing free biotin restores downstream biotin-dependent carboxylase function and reduces metabolic instability.
evidence:
- reference: PMID:38928282
reference_title: "Biotin Homeostasis and Human Disorders: Recent Findings and Perspectives."
supports: SUPPORT
evidence_source: OTHER
snippet: administration of biotin at high/"pharmacological" doses has been proposed to treat specific defects/deficiencies and human disorders
explanation: Review evidence supports pharmacologic biotin as treatment for biotin-homeostasis defects.
- name: Newborn screening
description: 'Biotinidase deficiency is widely included in newborn screening programs using biotinidase activity assays on dried blood spots. Newborn screening has had a major positive impact on outcomes. No deaths occurred among those detected by newborn screening and treated pre-symptomatically.
'
treatment_term:
preferred_term: disease screening
term:
id: MAXO:0000124
label: disease screening
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Newborn screening has had a major positive impact on the outcome of many individuals with BD
explanation: Systematic review confirms the positive impact of newborn screening on outcomes.
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: An analysis of the admission routes of all cases to our clinic revealed 89.5% NBS, 5.7% family screening, and 4.9% suspicious clinical findings suggestive of BD
explanation: Large cohort demonstrating that newborn screening identifies the vast majority of cases.
- name: Antiseizure medication
description: 'Anticonvulsant therapy may be needed for seizure management, although seizures often resolve with biotin supplementation alone. Antiepileptic therapy alone without biotin is typically insufficient.
'
treatment_term:
preferred_term: antiepileptic drug therapy
term:
id: MAXO:0000167
label: anticonvulsant agent therapy
evidence:
- reference: PMID:37373384
reference_title: "Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency: Late Arrival of the Truth and a Lesson Worth Thinking."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: The result of antiepileptic therapy was not satisfying
explanation: Case demonstrates that antiepileptic therapy alone is insufficient and biotin is the essential treatment.
- name: Genetic counseling
description: 'Genetic counseling is recommended for affected families to discuss autosomal recessive inheritance, 25% recurrence risk, carrier testing, and prenatal/preimplantation genetic testing options.
'
treatment_term:
preferred_term: genetic counseling
term:
id: MAXO:0000079
label: genetic counseling
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Biotinidase deficiency (BD) is an autosomal recessively inherited disorder
explanation: Autosomal recessive inheritance pattern supports the role of genetic counseling.
- reference: PMID:38141137
reference_title: "Evaluation of clinical, laboratory, and molecular genetic features of patients with biotinidase deficiency."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Biotinidase deficiency (BD) is an autosomal recessive inherited metabolic disorder
explanation: Genetic basis of the disorder supports counseling for recurrence risk assessment.
- name: Supportive care
description: 'Acute and chronic supportive management to reduce metabolic instability and complications. Includes monitoring of neurological, auditory, and visual function, and management of metabolic decompensation during intercurrent illness.
'
treatment_term:
preferred_term: supportive care
term:
id: MAXO:0000950
label: supportive care
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: a trial of biotin should be considered in undiagnosed infants and adults exhibiting suspected clinical signs. Enzymatic activity and/or analysis of genetic variants can readily confirm the diagnosis of BD
explanation: Supports comprehensive monitoring and supportive care approach for affected individuals.
- name: Audiological management
description: 'Regular audiological assessment and hearing aid or cochlear implant consideration for patients with sensorineural hearing loss, which may be irreversible once established.
'
treatment_term:
preferred_term: supportive care
term:
id: MAXO:0000950
label: supportive care
evidence:
- reference: PMID:37027963
reference_title: "Biotinidase deficiency: What have we learned in forty years?"
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: 'BD affected five main organ systems: nervous system (67.2%), skin (53.7%), eye (34.4%), auditory (26.9%)'
explanation: Auditory involvement at 26.9% supports the need for audiological monitoring and management.
- reference: PMID:39451125
reference_title: "A retrospective study on biotinidase deficiency: analysis of the Eastern Anatolia region patient cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Hearing loss (4 patients) and optic atrophy (1 patient) were mainly observed in patients with the c.38_delinsTCC mutation
explanation: Documents hearing loss as a significant complication requiring audiological management.
notes: 'Biotinidase deficiency is one of the most treatable inborn errors of metabolism. The key clinical message is that early diagnosis through newborn screening and prompt lifelong biotin supplementation prevent virtually all clinical manifestations. Delayed diagnosis carries risk of irreversible neurological damage, hearing loss, and optic atrophy. The disorder has two severity classes based on residual enzyme activity: profound (<10%) and partial (10-30%). A systematic review of 1113 cases found that no deaths occurred among individuals detected by newborn screening and treated pre-symptomatically. Genotype-phenotype correlations show c.1270G>C (p.Asp424His) is associated with partial deficiency while c.410G>A (p.Arg137His) and frameshift variants are associated with profound deficiency and more severe clinical outcomes.
Prevalence: Global incidence is commonly cited as approximately 1:40,000-1:60,000. Significant regional variation exists, with higher rates in populations with elevated consanguinity. Turkey reports national incidence of approximately 1:7,116 and as high as 1:2,359 in some regions.
Progression: Without treatment, biotinidase deficiency progresses from subclinical biotin depletion to functional multiple carboxylase deficiency, then metabolic decompensation with organic aciduria and lactic acidosis, and finally tissue injury with irreversible neurological, auditory, and visual sequelae. Earlier diagnosis and treatment improve reversibility, with prompt biotin able to reverse seizures and motor signs. Neurological deficits become permanent once established.'
Pathophysiology description (concise knowledge-base paragraph) BTD deficiency is an autosomal recessive disorder caused by loss of biotinidase activity, leading to failure of biotin recycling from biocytin/biotinyl-peptides and subsequent depletion of free biotin. The resulting functional deficiency of biotin-dependent carboxylases (including pyruvate carboxylase, propionyl-CoA carboxylase, and 3-methylcrotonyl-CoA carboxylase) causes metabolic acidosis/lactic acidosis, hyperammonemia, and organic aciduria with characteristic elevations such as C3 and C5‑OH acylcarnitines and urinary 3-hydroxyisovalerate/methylcitrate. CNS-predominant injury includes white matter/myelination abnormalities and involvement of specific neuroanatomical structures (e.g., fornices/brainstem/optic pathways/spinal cord), producing seizures, developmental delay, hypotonia, and potentially irreversible hearing/vision loss when untreated or treated late. Early newborn screening and prompt, lifelong oral biotin prevent disease manifestation in most cases. (devanapalli2024biotinidasedeficiencya pages 1-3, karachaliou2024biotinhomeostasisand pages 5-7, devanapalli2024biotinidasedeficiencya pages 3-5, biswas2023neuroimagingfeaturesof pages 3-4)
Gene/protein annotations • BTD (biotinidase) — causal gene; biallelic pathogenic variants reduce enzyme activity; severity correlates with residual activity categories (profound vs partial). (devanapalli2024biotinidasedeficiencya pages 1-3, karachaliou2024biotinhomeostasisand pages 5-7)
Representative genotype–phenotype notes (recent cohort) • Turin NBS cohort: D444H associated mostly with partial BTD; Q456H present in many profound cases; complex allele A171T/D444H can yield partial or profound depending on trans allele. (bracci2024biotinidasedeficiencyoutcomes pages 10-12)
GO biological process candidates (mechanism-linked) • Biotin metabolic process / biotin recycling (biotin cycle). (karachaliou2024biotinhomeostasisand pages 4-5) • Protein biotinylation / activation of carboxylases (HLCS-mediated). (karachaliou2024biotinhomeostasisand pages 4-5) • Gluconeogenesis (PC-linked) and propionate metabolism (PCC-linked). (karachaliou2024biotinhomeostasisand pages 5-7)
Cellular component candidates • Cytosol and mitochondrion (intermediary metabolism/organic acidemia-like biochemical phenotype implicates mitochondrial/cytosolic metabolic pathways). (devanapalli2024biotinidasedeficiencya pages 1-3, karachaliou2024biotinhomeostasisand pages 5-7)
Phenotype associations (HP term examples; evidence-supported) • Seizures; hypotonia; developmental delay; ataxia; hearing loss; optic atrophy/vision loss; skin rash; alopecia; metabolic acidosis; hyperammonemia; organic aciduria. (devanapalli2024biotinidasedeficiencya pages 1-3, devanapalli2024biotinidasedeficiencya pages 3-5, motta2024organicacidemiasclinical pages 9-10, biswas2023neuroimagingfeaturesof pages 3-4)
Cell type involvement (CL examples) • Cerebellar Purkinje cells (localization evidence). (devanapalli2024biotinidasedeficiencya pages 3-5) • Auditory brainstem nuclei (localization evidence). (devanapalli2024biotinidasedeficiencya pages 3-5)
Anatomical locations (UBERON examples) • Brain white matter/cerebellum/red nucleus/brainstem/optic pathway/spinal cord; skin. (devanapalli2024biotinidasedeficiencya pages 3-5, biswas2023neuroimagingfeaturesof pages 3-4)
Chemical entities (CHEBI examples) • Biotin; biocytin; lactate; propionylcarnitine (C3); 3-hydroxyisovaleryl-carnitine (C5‑OH); 3-hydroxyisovaleric acid; methylcitrate. (devanapalli2024biotinidasedeficiencya pages 1-3, karachaliou2024biotinhomeostasisand pages 5-7, liu2023delayedbiotintherapy pages 2-3)
13) Evidence items (PMID preference; availability note)
The retrieved full-text snippets in this run did not include PMIDs inline for the core 2024 IJMS review or the 2024 Brain & Development Case Reports article; however, peer-reviewed sources with DOI/URL and publication dates are provided below and are suitable for citation.
Key recent sources (URLs and publication dates) • Karachaliou C‑E, Livaniou E. “Biotin Homeostasis and Human Disorders: Recent Findings and Perspectives.” International Journal of Molecular Sciences. June 2024. https://doi.org/10.3390/ijms25126578 (karachaliou2024biotinhomeostasisand pages 5-7) • Devanapalli B, et al. “Biotinidase deficiency: A treatable neurometabolic disorder.” Brain and Development Case Reports. June 2024. https://doi.org/10.1016/j.bdcasr.2024.100021 (devanapalli2024biotinidasedeficiencya pages 1-3, devanapalli2024biotinidasedeficiencya pages 3-5, devanapalli2024biotinidasedeficiencya pages 5-7) • Biswas A, et al. “Neuroimaging Features of Biotinidase Deficiency.” American Journal of Neuroradiology. February 2023. https://doi.org/10.3174/ajnr.a7781 (biswas2023neuroimagingfeaturesof pages 1-3, biswas2023neuroimagingfeaturesof pages 3-4) • Liu S, et al. “Delayed Biotin Therapy in a Child with Atypical Profound Biotinidase Deficiency…” International Journal of Molecular Sciences. June 2023. https://doi.org/10.3390/ijms241210239 (liu2023delayedbiotintherapy pages 1-2, liu2023delayedbiotintherapy pages 2-3)
Limitations This tool run retrieved strong mechanistic and real-world screening/treatment evidence but did not successfully obtain the full text of one highly relevant 2023 historical synthesis (“Biotinidase deficiency: what have we learned in forty years?”, doi:10.1016/j.ymgme.2023.107560) and therefore cannot directly quote/cite it here. (No citeable context available in this run.)
References
(bracci2024biotinidasedeficiencyoutcomes pages 10-12): B Bracci, D Mala, E Pavanello, and P Sauro. Biotinidase deficiency: outcomes of 37 years-experience of newborn screening in turin, italy. Unknown journal, 2024.
(devanapalli2024biotinidasedeficiencya pages 1-3): Beena Devanapalli, Rachel Sze Hui Wong, Natalie Lim, P Ian Andrews, Keshini Vijayan, Won-Tae Kim, Tiffany Wotton, Esther Tantsis, Enzo Ranieri, Adviye Ayper Tolun, and Shanti Balasubramaniam. Biotinidase deficiency: a treatable neurometabolic disorder. Brain and Development Case Reports, 2:100021, Jun 2024. URL: https://doi.org/10.1016/j.bdcasr.2024.100021, doi:10.1016/j.bdcasr.2024.100021. This article has 5 citations.
(karachaliou2024biotinhomeostasisand pages 5-7): Chrysoula-Evangelia Karachaliou and Evangelia Livaniou. Biotin homeostasis and human disorders: recent findings and perspectives. International Journal of Molecular Sciences, 25:6578, Jun 2024. URL: https://doi.org/10.3390/ijms25126578, doi:10.3390/ijms25126578. This article has 45 citations.
(motta2024organicacidemiasclinical pages 9-10): Mario Motta, Mohammad Mozibur Rahman, Gayatri Athalye-Jape, and Monika Kaushal. Organic acidemias: clinical presentation in neonates. Newborn, 2:263-278, Jan 2024. URL: https://doi.org/10.5005/jp-journals-11002-0080, doi:10.5005/jp-journals-11002-0080. This article has 3 citations.
(karachaliou2024biotinhomeostasisand pages 4-5): Chrysoula-Evangelia Karachaliou and Evangelia Livaniou. Biotin homeostasis and human disorders: recent findings and perspectives. International Journal of Molecular Sciences, 25:6578, Jun 2024. URL: https://doi.org/10.3390/ijms25126578, doi:10.3390/ijms25126578. This article has 45 citations.
(karachaliou2024biotinhomeostasisand media 2c556c74): Chrysoula-Evangelia Karachaliou and Evangelia Livaniou. Biotin homeostasis and human disorders: recent findings and perspectives. International Journal of Molecular Sciences, 25:6578, Jun 2024. URL: https://doi.org/10.3390/ijms25126578, doi:10.3390/ijms25126578. This article has 45 citations.
(karachaliou2024biotinhomeostasisand media c7e991bf): Chrysoula-Evangelia Karachaliou and Evangelia Livaniou. Biotin homeostasis and human disorders: recent findings and perspectives. International Journal of Molecular Sciences, 25:6578, Jun 2024. URL: https://doi.org/10.3390/ijms25126578, doi:10.3390/ijms25126578. This article has 45 citations.
(karachaliou2024biotinhomeostasisand media c9e70a46): Chrysoula-Evangelia Karachaliou and Evangelia Livaniou. Biotin homeostasis and human disorders: recent findings and perspectives. International Journal of Molecular Sciences, 25:6578, Jun 2024. URL: https://doi.org/10.3390/ijms25126578, doi:10.3390/ijms25126578. This article has 45 citations.
(devanapalli2024biotinidasedeficiencya pages 3-5): Beena Devanapalli, Rachel Sze Hui Wong, Natalie Lim, P Ian Andrews, Keshini Vijayan, Won-Tae Kim, Tiffany Wotton, Esther Tantsis, Enzo Ranieri, Adviye Ayper Tolun, and Shanti Balasubramaniam. Biotinidase deficiency: a treatable neurometabolic disorder. Brain and Development Case Reports, 2:100021, Jun 2024. URL: https://doi.org/10.1016/j.bdcasr.2024.100021, doi:10.1016/j.bdcasr.2024.100021. This article has 5 citations.
(biswas2023neuroimagingfeaturesof pages 1-3): A. Biswas, C. McNamara, V. Gowda, F. Gala, S. Sudhakar, M. S. J. Sidpra, P. Vari, S. Striano, M. Blaser, S. Severino, K. Batzios, Mankad, Istituto di Ricovero e Cura, and Carattere Scientifico. Neuroimaging features of biotinidase deficiency. American Journal of Neuroradiology, 44:328-333, Feb 2023. URL: https://doi.org/10.3174/ajnr.a7781, doi:10.3174/ajnr.a7781. This article has 17 citations and is from a peer-reviewed journal.
(biswas2023neuroimagingfeaturesof pages 3-4): A. Biswas, C. McNamara, V. Gowda, F. Gala, S. Sudhakar, M. S. J. Sidpra, P. Vari, S. Striano, M. Blaser, S. Severino, K. Batzios, Mankad, Istituto di Ricovero e Cura, and Carattere Scientifico. Neuroimaging features of biotinidase deficiency. American Journal of Neuroradiology, 44:328-333, Feb 2023. URL: https://doi.org/10.3174/ajnr.a7781, doi:10.3174/ajnr.a7781. This article has 17 citations and is from a peer-reviewed journal.
(alharbi2023overviewonpathophysiology pages 2-4): Faisal Mohammed Alharbi, Ahmad Sughaier Albalawi, Fawaz Khalifah Alanazi, Turki Saleh Alshehri, Badriah Abdulrahman Alsabah, and Alaa Saud Alyasi. Overview on pathophysiology, diagnosis, and management of biotinidase deficiency in pediatrics. Archives of Pharmacy Practice, 14:99-105, Jan 2023. URL: https://doi.org/10.51847/8hpvomjrdl, doi:10.51847/8hpvomjrdl. This article has 1 citations.
(liu2023delayedbiotintherapy pages 6-7): Shu Liu, Ye Zhang, Zhi Deng, Hui He, Xianhua Zheng, Qingshan Hong, and Xianqiong Luo. Delayed biotin therapy in a child with atypical profound biotinidase deficiency: late arrival of the truth and a lesson worth thinking. International Journal of Molecular Sciences, 24:10239, Jun 2023. URL: https://doi.org/10.3390/ijms241210239, doi:10.3390/ijms241210239. This article has 4 citations.
(liu2023delayedbiotintherapy pages 1-2): Shu Liu, Ye Zhang, Zhi Deng, Hui He, Xianhua Zheng, Qingshan Hong, and Xianqiong Luo. Delayed biotin therapy in a child with atypical profound biotinidase deficiency: late arrival of the truth and a lesson worth thinking. International Journal of Molecular Sciences, 24:10239, Jun 2023. URL: https://doi.org/10.3390/ijms241210239, doi:10.3390/ijms241210239. This article has 4 citations.
(liu2023delayedbiotintherapy pages 2-3): Shu Liu, Ye Zhang, Zhi Deng, Hui He, Xianhua Zheng, Qingshan Hong, and Xianqiong Luo. Delayed biotin therapy in a child with atypical profound biotinidase deficiency: late arrival of the truth and a lesson worth thinking. International Journal of Molecular Sciences, 24:10239, Jun 2023. URL: https://doi.org/10.3390/ijms241210239, doi:10.3390/ijms241210239. This article has 4 citations.
(liu2023delayedbiotintherapy pages 3-6): Shu Liu, Ye Zhang, Zhi Deng, Hui He, Xianhua Zheng, Qingshan Hong, and Xianqiong Luo. Delayed biotin therapy in a child with atypical profound biotinidase deficiency: late arrival of the truth and a lesson worth thinking. International Journal of Molecular Sciences, 24:10239, Jun 2023. URL: https://doi.org/10.3390/ijms241210239, doi:10.3390/ijms241210239. This article has 4 citations.
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