BLOC1S1-related complex neurodevelopmental disorder with leukodystrophy is a rare autosomal recessive white matter and neurodevelopmental disorder caused by biallelic BLOC1S1 variants. BLOC1S1 encodes a subunit shared by the BLOC-1 and BORC complexes, and current evidence supports a BORC-predominant endolysosomal trafficking defect with impaired lysosomal transport and autophagy. Affected individuals present with early psychomotor delay, hypotonia, progressive spasticity, epileptic encephalopathy, optic atrophy, and hypomyelinating leuko-axonopathy, with milder hypopigmentation or ocular albinism in a subset.
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name: BLOC1S1-related Complex Neurodevelopmental Disorder with Leukodystrophy
creation_date: "2026-04-16T00:00:00Z"
updated_date: "2026-04-16T00:00:00Z"
category: Mendelian
description: >-
BLOC1S1-related complex neurodevelopmental disorder with leukodystrophy is a
rare autosomal recessive white matter and neurodevelopmental disorder caused
by biallelic BLOC1S1 variants. BLOC1S1 encodes a subunit shared by the BLOC-1
and BORC complexes, and current evidence supports a BORC-predominant
endolysosomal trafficking defect with impaired lysosomal transport and
autophagy. Affected individuals present with early psychomotor delay,
hypotonia, progressive spasticity, epileptic encephalopathy, optic atrophy,
and hypomyelinating leuko-axonopathy, with milder hypopigmentation or ocular
albinism in a subset.
notes: >-
MONDO NTR anchor: monarch-initiative/mondo#10118. As of 2026-04-16, the exact
requested MONDO term was not returned by local OLS search, so this entry is
provisionally anchored to the broader parent term MONDO:0100038 (complex
neurodevelopmental disorder). The 2026 BLOC1S1 cohort paper further frames the
condition as a BORCopathy with prominent leukodystrophy.
disease_term:
preferred_term: BLOC1S1-related complex neurodevelopmental disorder with leukodystrophy
term:
id: MONDO:0100038
label: complex neurodevelopmental disorder
parents:
- Neurodevelopmental Disorder
- Leukodystrophy
synonyms:
- BLOC1S1-related hypomyelinating leukodystrophy with epileptic encephalopathy
inheritance:
- name: Autosomal recessive inheritance
description: >-
Reported affected individuals carry either compound heterozygous or
homozygous BLOC1S1 variants, consistent with autosomal recessive
inheritance.
inheritance_term:
preferred_term: Autosomal recessive inheritance
term:
id: HP:0000007
label: Autosomal recessive inheritance
evidence:
- reference: PMID:36070637
reference_title: "Generation of human induced pluripotential stem cells from individuals with complex heterozygous, isogenic corrected, and homozygous Bloc1s1 mutations."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The Vanderver laboratory identified additional individuals with leukodystrophy that harbored either complex heterozygous (Bloc1s1 c.206A > C and c.359G > A), or homozygous (Bloc1s1 c.185 T > C) point mutations."
explanation: Compound heterozygous and homozygous affected individuals support autosomal recessive inheritance.
pathophysiology:
- name: BLOC1S1 loss of function in the shared BLOC-1/BORC module
description: >-
BLOC1S1 encodes a shared subunit of the BLOC-1 and BORC complexes.
Disease-causing variants impair this shared module, with current evidence
indicating a BORC-predominant neurologic disorder rather than the full
canonical BLOC-1/Hermansky-Pudlak syndrome phenotype. Mild pigmentary
findings can occur, but bleeding diathesis, pulmonary fibrosis,
granulomatous colitis, and immunodeficiency should not be generalized to
BLOC1S1-related disease from other BLOC-1 subunit disorders.
genes:
- preferred_term: BLOC1S1
term:
id: hgnc:4200
label: BLOC1S1
biological_processes:
- preferred_term: lysosomal transport
term:
id: GO:0007041
label: lysosomal transport
- preferred_term: lysosome organization
term:
id: GO:0007040
label: lysosome organization
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "BLOC1S1 encodes a subunit shared by the BLOC-1 and BORC hetero-octameric complexes that regulate various endolysosomal processes."
explanation: This establishes BLOC1S1 as a shared BLOC-1/BORC component and anchors the disease to endolysosomal biology.
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "These findings provide genetic, clinical, and functional evidence that loss-of-function (LoF) of BLOC1S1 leads to more pronounced deficits in BORC than BLOC-1 function."
explanation: This directly supports loss of function as the pathogenic mechanism and indicates BORC-predominant dysfunction.
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
These findings suggest that disease phenotypes segregate distinctly with
the affected complex, with LoF variants in BLOC-1-specific subunits
resulting in HPS while LoF variants in BORC specific-subunits result in
primary neurological disorders.
explanation: >-
The full text distinguishes BLOC-1-specific HPS biology from
BORC-specific neurologic disease biology.
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Otherwise, there were no findings characteristic of HPS such as bleeding
diathesis, pulmonary fibrosis, granulomatous colitis, or immunodeficiency
(Table S2).
explanation: >-
This constrains the BLOC-1/HPS overlap and prevents overgeneralizing
non-neurologic HPS manifestations to BLOC1S1-related BORCopathy.
downstream:
- target: Impaired lysosome transport and autophagy
description: BORC/BLOC-1 dysfunction disrupts endolysosomal trafficking and degradative homeostasis.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Functional analyses show that BLOC1S1 knockout (KO) impairs the anterograde transport of lysosomes and autophagy in both non-neuronal cells and iPSC-derived neurons."
explanation: This directly supports impaired lysosomal transport and autophagy as downstream consequences of BLOC1S1 deficiency.
- target: Pigmentation organelle dysfunction
description: Shared BLOC-1 biology also perturbs lysosome-related organelles in pigment cells.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Additionally, we show that KO of BLOC1S1 reduces pigmentation in a melanocytic cell line, and that five of the BLOC1S1 variants partially or fully restore pigmentation."
explanation: The melanocyte rescue experiments directly support pigmentation organelle dysfunction downstream of BLOC1S1 loss.
- name: Impaired lysosome transport and autophagy
description: >-
Functional studies in BLOC1S1-knockout cells and patient-derived neuronal
models show defective lysosome positioning, impaired lysosomal transport,
and abnormal autophagy, consistent with an endolysosomal trafficking
disorder in neural cells.
cell_types:
- preferred_term: neuron
term:
id: CL:0000540
label: neuron
biological_processes:
- preferred_term: lysosomal transport
term:
id: GO:0007041
label: lysosomal transport
- preferred_term: lysosome localization
term:
id: GO:0032418
label: lysosome localization
- preferred_term: autophagy
term:
id: GO:0006914
label: autophagy
locations:
- preferred_term: brain
term:
id: UBERON:0000955
label: brain
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Functional analyses show that BLOC1S1 knockout (KO) impairs the anterograde transport of lysosomes and autophagy in both non-neuronal cells and iPSC-derived neurons."
explanation: Patient-linked cellular models directly demonstrate impaired lysosomal transport and autophagy, especially in neuronal systems.
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Rescue experiments reveal that most BLOC1S1 variants exhibit reduced expression, decreased assembly with other BORC/BLOC-1 subunits, and/or impaired restoration of lysosome transport and autophagy in BLOC1S1-KO cells."
explanation: Variant-rescue experiments link the patient alleles to defective complex assembly and failed restoration of lysosome transport and autophagy.
downstream:
- target: Hypomyelinating leuko-axonopathy
description: Neural endolysosomal trafficking failure contributes to the white matter phenotype.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: The cohort establishes hypomyelinating leuko-axonopathy as a key disease outcome, partially supporting it as a downstream consequence of the trafficking defect demonstrated in cellular models.
- target: Epileptic encephalopathy
description: Neuronal trafficking and autophagy defects likely contribute to severe epilepsy and encephalopathy.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: The cohort directly documents epileptic encephalopathy, partially supporting it as a downstream manifestation of neural trafficking and autophagy defects.
- name: Hypomyelinating leuko-axonopathy
description: >-
The dominant clinical CNS consequence is a white matter disorder with
hypomyelination and prominent leukodystrophy, indicating impaired white
matter development and maintenance downstream of BLOC1S1-dependent
endolysosomal biology.
biological_processes:
- preferred_term: central nervous system myelination
term:
id: GO:0022010
label: central nervous system myelination
locations:
- preferred_term: white matter
term:
id: UBERON:0002316
label: white matter
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: The core cohort establishes hypomyelinating leuko-axonopathy as a defining white matter consequence of BLOC1S1-related disease.
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "We conclude that the biallelic BLOC1S1 variants characterized here primarily result in a neurological disorder with prominent leukodystrophy, similar to the recently reported condition caused by variants in the BORCS8 subunit of BORC."
explanation: This conclusion directly frames the disorder as a leukodystrophy and links it mechanistically to other BORC-related white matter diseases.
downstream:
- target: Leukodystrophy
description: White matter disease manifests clinically as prominent leukodystrophy.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "We conclude that the biallelic BLOC1S1 variants characterized here primarily result in a neurological disorder with prominent leukodystrophy, similar to the recently reported condition caused by variants in the BORCS8 subunit of BORC."
explanation: This directly supports leukodystrophy as the clinical outcome of the hypomyelinating white matter process.
- target: Optic atrophy
description: CNS white matter and axonal involvement extends to the visual system.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: This directly supports optic atrophy as part of the downstream clinical phenotype accompanying hypomyelinating leuko-axonopathy.
- target: Spasticity
description: Long-tract dysfunction contributes to progressive spasticity.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: This directly supports spasticity as a downstream clinical consequence of the white matter disease.
- name: Pigmentation organelle dysfunction
description: >-
Because BLOC1S1 also participates in BLOC-1 biology, some affected
individuals show a milder lysosome-related organelle phenotype with altered
pigmentation and ocular albinism features.
cell_types:
- preferred_term: melanocyte
term:
id: CL:0000148
label: melanocyte
biological_processes:
- preferred_term: pigmentation
term:
id: GO:0043473
label: pigmentation
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "A subset of the affected individuals also have features of hypopigmentation and ocular albinism that are similar, although milder, than those of individuals with BLOC-1-related Hermansky-Pudlak syndrome."
explanation: This supports a milder pigmentation phenotype in a subset of affected individuals, consistent with shared BLOC-1 biology.
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Additionally, we show that KO of BLOC1S1 reduces pigmentation in a melanocytic cell line, and that five of the BLOC1S1 variants partially or fully restore pigmentation."
explanation: Melanocyte experiments provide functional support that BLOC1S1 deficiency perturbs pigmentation organelles.
downstream:
- target: Hypopigmentation of the skin
description: Pigment organelle dysfunction reduces skin pigmentation in a subset of affected individuals.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "A subset of the affected individuals also have features of hypopigmentation and ocular albinism that are similar, although milder, than those of individuals with BLOC-1-related Hermansky-Pudlak syndrome."
explanation: This directly supports hypopigmentation as a downstream consequence of pigment organelle dysfunction.
- target: Ocular albinism
description: Shared pigmentation pathway disruption also affects ocular pigmentation.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "A subset of the affected individuals also have features of hypopigmentation and ocular albinism that are similar, although milder, than those of individuals with BLOC-1-related Hermansky-Pudlak syndrome."
explanation: This directly supports ocular albinism features as a downstream consequence of pigment organelle dysfunction.
phenotypes:
- name: Motor delay
category: Neurologic
diagnostic: true
description: Early psychomotor delay is a core presenting feature.
phenotype_term:
preferred_term: Motor delay
term:
id: HP:0001270
label: Motor delay
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: Early psychomotor delay directly supports motor developmental delay as a defining clinical feature.
- name: Hypotonia
category: Neurologic
diagnostic: true
description: Hypotonia is a recurrent early neurological manifestation.
phenotype_term:
preferred_term: Hypotonia
term:
id: HP:0001252
label: Hypotonia
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: The core cohort description directly identifies hypotonia as part of the syndrome.
- name: Spasticity
category: Neurologic
diagnostic: true
description: >-
Spasticity emerges as part of the severe motor phenotype and can reach
profound spastic tetraparesis in severely affected individuals.
phenotype_term:
preferred_term: Spasticity
term:
id: HP:0001257
label: Spasticity
clinical_course: PROGRESSIVE
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: The cohort abstract directly identifies spasticity as a core neurological feature.
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Disease severity ranged from early death (FIV:1 and FVII:1), profound
spastic tetraparesis with epileptic encephalopathy (FI:1, FII:1, FII:2,
FIII:1, FVI:1), to a milder phenotype with preserved ambulation and single
word communication (FV:1 and FV:2).
explanation: >-
The cohort severity spectrum supports severe progressive motor involvement
with spastic tetraparesis in the severe end of the disorder.
- name: Epileptic encephalopathy
category: Neurologic
diagnostic: true
description: >-
Severe epilepsy with encephalopathy is a defining neurological complication
and may be refractory in some affected individuals.
phenotype_term:
preferred_term: Epileptic encephalopathy
term:
id: HP:0200134
label: Epileptic encephalopathy
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: The cohort abstract directly identifies epileptic encephalopathy as part of the disease presentation.
- name: Optic atrophy
category: Ophthalmologic
diagnostic: true
description: Optic atrophy reflects involvement of the visual system.
phenotype_term:
preferred_term: Optic atrophy
term:
id: HP:0000648
label: Optic atrophy
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: The cohort abstract directly identifies optic atrophy as a core ophthalmologic feature.
- name: Cortical visual impairment
category: Ophthalmologic
diagnostic: true
description: >-
Cortical visual impairment occurs with optic nerve atrophy in the reported
clinical spectrum.
phenotype_term:
preferred_term: Cortical visual impairment
term:
id: HP:0000505
label: Visual impairment
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
cortical visual impairment with bilateral optic nerve atrophy, failure to
thrive, and, in some cases, refractory epilepsy
explanation: >-
The full-text clinical spectrum directly documents cortical visual
impairment with optic nerve atrophy.
- name: Leukodystrophy
category: Neurologic
diagnostic: true
description: Prominent leukodystrophy is the defining white matter disease pattern.
phenotype_term:
preferred_term: Leukodystrophy
term:
id: HP:0002415
label: Leukodystrophy
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "We conclude that the biallelic BLOC1S1 variants characterized here primarily result in a neurological disorder with prominent leukodystrophy, similar to the recently reported condition caused by variants in the BORCS8 subunit of BORC."
explanation: This conclusion directly supports leukodystrophy as the dominant white matter phenotype.
- name: Cerebral hypomyelination
category: Neurologic
diagnostic: true
description: Neuroimaging shows hypomyelinating white matter disease.
phenotype_term:
preferred_term: Cerebral hypomyelination
term:
id: HP:0006808
label: Cerebral hypomyelination
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: Leuko-axonopathy with hypomyelination supports cerebral hypomyelination as a defining imaging phenotype.
- name: Abnormal corpus callosum morphology
category: Neurologic
diagnostic: true
description: >-
Brain MRI can show corpus callosum hypoplasia, hypogenesis/dysgenesis, or
agenesis as part of the hypomyelinating leukodystrophy pattern.
phenotype_term:
preferred_term: Abnormal corpus callosum morphology
term:
id: HP:0001273
label: Abnormal corpus callosum morphology
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Hypomyelination with or without superimposed sequela of deep cerebral
white matter dysmyelination or demyelination, corpus callosum
abnormalities (hypoplasia, hypogenesis/dysgenesis, or agenesis), and brain
volume loss were typical brain MR features.
explanation: >-
The neuroradiology review identifies corpus callosum abnormalities as a
typical brain MRI feature.
- name: Cerebral atrophy
category: Neurologic
diagnostic: true
description: >-
Brain volume loss is part of the reported neuroimaging pattern in affected
individuals.
phenotype_term:
preferred_term: Brain volume loss
term:
id: HP:0002059
label: Cerebral atrophy
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Brain MR images show variable hypomyelination with or without superimposed
sequela of deep cerebral white matter dysmyelination or demyelination,
corpus callosum abnormalities (hypoplasia, hypogenesis/dysgenesis, or
agenesis), and brain volume loss.
explanation: >-
The figure legend directly documents brain volume loss among MRI findings.
- name: Hypopigmentation of the skin
category: Dermatologic
description: A subset of individuals show mild pigmentary abnormalities.
phenotype_term:
preferred_term: Hypopigmentation of the skin
term:
id: HP:0001010
label: Hypopigmentation of the skin
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "A subset of the affected individuals also have features of hypopigmentation and ocular albinism that are similar, although milder, than those of individuals with BLOC-1-related Hermansky-Pudlak syndrome."
explanation: This directly supports mild hypopigmentation in a subset of affected individuals.
- name: Ocular albinism
category: Ophthalmologic
description: Some individuals show mild ocular albinism features.
phenotype_term:
preferred_term: Ocular albinism
term:
id: HP:0001107
label: Ocular albinism
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "A subset of the affected individuals also have features of hypopigmentation and ocular albinism that are similar, although milder, than those of individuals with BLOC-1-related Hermansky-Pudlak syndrome."
explanation: This directly supports ocular albinism features in a subset of affected individuals.
genetic:
- name: BLOC1S1
association: Causal biallelic variant
gene_term:
preferred_term: BLOC1S1
term:
id: hgnc:4200
label: BLOC1S1
notes: >-
Reported pathogenic alleles include compound heterozygous missense variants,
homozygous missense variants, a splice-altering frameshift predicted to
undergo nonsense-mediated decay, and a multi-exon deletion. Current evidence
supports loss of function with BORC-predominant endolysosomal consequences.
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "These findings provide genetic, clinical, and functional evidence that loss-of-function (LoF) of BLOC1S1 leads to more pronounced deficits in BORC than BLOC-1 function."
explanation: This provides the strongest current evidence linking BLOC1S1 loss of function to the disease.
- reference: PMID:36070637
reference_title: "Generation of human induced pluripotential stem cells from individuals with complex heterozygous, isogenic corrected, and homozygous Bloc1s1 mutations."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The Vanderver laboratory identified additional individuals with leukodystrophy that harbored either complex heterozygous (Bloc1s1 c.206A > C and c.359G > A), or homozygous (Bloc1s1 c.185 T > C) point mutations."
explanation: This independently supports recurrent biallelic BLOC1S1 variation in individuals with leukodystrophy.
variants:
- name: Biallelic BLOC1S1 missense variants
description: >-
Reported alleles include compound heterozygous missense variants and
multiple homozygous missense variants.
gene:
preferred_term: BLOC1S1
term:
id: hgnc:4200
label: BLOC1S1
type: missense
clinical_significance: PATHOGENIC
functional_effects:
- function: loss_of_function
description: >-
Missense variants show reduced expression, impaired BORC/BLOC-1
assembly, or impaired rescue of lysosome transport and autophagy.
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
FI:1 was found to have compound heterozygous variants, including
maternally inherited c.206A>C, p.His69Pro (H69P) and paternally
inherited c.359G>A, p.Gly120Glu (G120E) missense variants
explanation: This documents compound heterozygous missense BLOC1S1 variants.
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Some of these variants were missense [FII:1, FII:2, FV:1, and FV:2;
c.284C>A p.Ala95Asp (A95D); FIII:1, c.185T>C; p.Leu62Pro
(L62P); FVI:1, c.347T>C; p.Leu116Pro (L116P)]
explanation: This documents the homozygous missense variant spectrum.
- name: BLOC1S1 splice-altering frameshift variant
description: >-
A splice-altering intronic variant is predicted to skip an exon, create a
frameshift, and undergo nonsense-mediated decay.
gene:
preferred_term: BLOC1S1
term:
id: hgnc:4200
label: BLOC1S1
type: splice_site_frameshift
clinical_significance: PATHOGENIC
functional_effects:
- function: loss_of_function
description: Predicted exon skipping and frameshift would likely trigger nonsense-mediated decay.
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
FIV:1 had an intronic variant, predicted to cause loss of the donor
splice site from exon 2 to exon 3, resulting in a predicted exon
skipping event and frameshift that would likely be subject to
nonsense-mediated decay
explanation: This documents the splice-altering frameshift loss-of-function class.
- name: BLOC1S1 multi-exon deletion
description: >-
A homozygous deletion spanning BLOC1S1 exons 2-4 was reported in the
severe fetal/infantile end of the spectrum.
gene:
preferred_term: BLOC1S1
term:
id: hgnc:4200
label: BLOC1S1
type: multi_exon_deletion
clinical_significance: PATHOGENIC
functional_effects:
- function: loss_of_function
description: Deletion of BLOC1S1 coding exons is consistent with loss of function.
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
homozygous deletion including exons 2-4 of <em>BLOC1S1</em> and the
first exon of <em>RDH5</em>
explanation: This documents the multi-exon BLOC1S1 deletion class.
biochemical: []
environmental: []
diagnosis:
- name: Brain MRI pattern recognition
description: >-
Brain MRI should assess for hypomyelinating leukodystrophy with possible
superimposed deep white matter dysmyelination or demyelination, corpus
callosum abnormalities, and brain volume loss.
diagnosis_term:
preferred_term: MRI of the brain
term:
id: MAXO:0000427
label: MRI of the brain
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Brain MR images show variable hypomyelination with or without superimposed
sequela of deep cerebral white matter dysmyelination or demyelination,
corpus callosum abnormalities (hypoplasia, hypogenesis/dysgenesis, or
agenesis), and brain volume loss.
explanation: >-
The figure legend summarizes the MRI pattern that supports diagnostic
recognition of the disorder.
- name: BLOC1S1 molecular genetic testing
description: >-
Exome, genome, or targeted leukodystrophy/neurodevelopmental gene testing
should look for biallelic BLOC1S1 variants, including missense,
splice/frameshift, and deletion alleles.
diagnosis_term:
preferred_term: molecular genetic testing
term:
id: MAXO:0000533
label: molecular genetic testing
results: Biallelic pathogenic or likely pathogenic BLOC1S1 variants support diagnosis.
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Variants in <em>BLOC1S1</em> (NM_001487.4), located on chromosome 12q13.2,
were identified in all 11 individuals by genome or exome sequencing.
explanation: This directly supports molecular testing for biallelic BLOC1S1 variants.
- name: EEG and epilepsy characterization
description: >-
EEG is appropriate when seizures, developmental epileptic encephalopathy, or
refractory epilepsy are present, to classify seizure burden and guide
antiseizure management.
diagnosis_term:
preferred_term: electroencephalography
term:
id: MAXO:0000932
label: electroencephalography
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: >-
The cohort establishes epileptic encephalopathy as a core feature,
supporting EEG-based clinical characterization.
- name: Ophthalmologic examination
description: >-
Ophthalmologic assessment should evaluate optic atrophy, cortical visual
impairment, and ocular albinism features.
diagnosis_term:
preferred_term: eye examination
term:
id: MAXO:0001155
label: eye examination
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Most subjects in whom ophthalmologic examination was performed had optic atrophy.
explanation: >-
The cohort ophthalmology findings support eye examination as part of
diagnostic assessment.
- name: Neurophysiologic assessment for leuko-axonopathy
description: >-
Neurophysiologic testing such as evoked potentials or nerve-conduction
studies can be considered when clinical findings suggest visual pathway or
peripheral axonal involvement, complementing MRI and ophthalmology.
diagnosis_term:
preferred_term: diagnostic procedure
term:
id: MAXO:0000003
label: diagnostic procedure
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: >-
The source documents leuko-axonopathy and optic atrophy; neurophysiology is
a phenotype-directed adjunct rather than a disease-specific diagnostic
criterion.
treatments:
- name: Antiseizure medication management
description: >-
Antiseizure medication should be individualized for epileptic
encephalopathy, with specialist follow-up because epilepsy can be refractory.
notes: >-
No BLOC1S1-specific disease-modifying therapy or antiseizure medication
hierarchy has been established.
treatment_term:
preferred_term: pharmacotherapy
term:
id: MAXO:0000058
label: pharmacotherapy
target_phenotypes:
- preferred_term: Epileptic encephalopathy
term:
id: HP:0200134
label: Epileptic encephalopathy
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
cortical visual impairment with bilateral optic nerve atrophy, failure to
thrive, and, in some cases, refractory epilepsy
explanation: >-
Refractory epilepsy in the cohort supports epilepsy-specialist management
with antiseizure therapy.
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Several subjects had mild transaminase elevations attributed to anticonvulsant use.
explanation: >-
Reported anticonvulsant use confirms seizure-directed pharmacologic
management in affected individuals.
- name: Spasticity management
description: >-
Manage spasticity with rehabilitation, stretching and positioning, orthoses,
and individualized antispasticity pharmacotherapy such as baclofen when
clinically appropriate.
treatment_term:
preferred_term: pharmacotherapy
term:
id: MAXO:0000058
label: pharmacotherapy
therapeutic_agent:
- preferred_term: baclofen
term:
id: CHEBI:2972
label: baclofen
target_phenotypes:
- preferred_term: Spasticity
term:
id: HP:0001257
label: Spasticity
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: >-
Disease severity ranged from early death (FIV:1 and FVII:1), profound
spastic tetraparesis with epileptic encephalopathy (FI:1, FII:1, FII:2,
FIII:1, FVI:1), to a milder phenotype with preserved ambulation and single
word communication (FV:1 and FV:2).
explanation: >-
The cohort documents severe spastic tetraparesis, supporting
phenotype-directed spasticity management; baclofen use is extrapolated
from standard spasticity care rather than trial evidence in this disorder.
- name: Physical and occupational therapy
description: >-
Physical and occupational therapy support hypotonia, motor delay, spasticity,
mobility, positioning, and adaptive daily living needs across the severity
spectrum.
treatment_term:
preferred_term: physical therapy
term:
id: MAXO:0000011
label: physical therapy
target_phenotypes:
- preferred_term: Motor delay
term:
id: HP:0001270
label: Motor delay
- preferred_term: Hypotonia
term:
id: HP:0001252
label: Hypotonia
- preferred_term: Spasticity
term:
id: HP:0001257
label: Spasticity
evidence:
- reference: PMID:40791729
reference_title: "BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy."
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: "Here, we report the identification of seven distinct variants in BLOC1S1 in eleven individuals from seven independent families presenting with early psychomotor delay, hypotonia, spasticity, epileptic encephalopathy, optic atrophy, and leuko-axonopathy with hypomyelination."
explanation: >-
Core motor delay, hypotonia, and spasticity support multidisciplinary
rehabilitation as supportive care.
- name: Speech therapy and augmentative communication
description: >-
Speech-language therapy and augmentative communication planning are
appropriate because the mild end of the spectrum includes only single-word
communication and severe cases have profound neurologic impairment.
treatment_term:
preferred_term: speech therapy
term:
id: MAXO:0000930
label: speech therapy
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: PARTIAL
evidence_source: HUMAN_CLINICAL
snippet: >-
Disease severity ranged from early death (FIV:1 and FVII:1), profound
spastic tetraparesis with epileptic encephalopathy (FI:1, FII:1, FII:2,
FIII:1, FVI:1), to a milder phenotype with preserved ambulation and single
word communication (FV:1 and FV:2).
explanation: >-
Limited expressive communication in the mild group supports
speech-language and augmentative communication planning.
- name: Ophthalmology and vision support
description: >-
Ongoing ophthalmology follow-up and low-vision supports should address optic
atrophy, cortical visual impairment, and ocular albinism features.
treatment_term:
preferred_term: supportive care
term:
id: MAXO:0000950
label: supportive care
target_phenotypes:
- preferred_term: Optic atrophy
term:
id: HP:0000648
label: Optic atrophy
- preferred_term: Cortical visual impairment
term:
id: HP:0000505
label: Visual impairment
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Most subjects in whom ophthalmologic examination was performed had optic atrophy.
explanation: >-
Common optic atrophy supports ongoing ophthalmologic management and vision
support.
- name: Genetic counseling
description: >-
Genetic counseling should explain autosomal recessive inheritance, the 25%
sibling recurrence risk when both parents are carriers, carrier testing for
relatives, and reproductive options including prenatal or preimplantation
testing once familial variants are known.
treatment_term:
preferred_term: genetic counseling
term:
id: MAXO:0000079
label: genetic counseling
evidence:
- reference: PMID:36070637
reference_title: "Generation of human induced pluripotential stem cells from individuals with complex heterozygous, isogenic corrected, and homozygous Bloc1s1 mutations."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The Vanderver laboratory identified additional individuals with leukodystrophy that harbored either complex heterozygous (Bloc1s1 c.206A > C and c.359G > A), or homozygous (Bloc1s1 c.185 T > C) point mutations."
explanation: >-
Compound heterozygous and homozygous affected individuals support
autosomal recessive recurrence counseling.
- name: Palliative and complex supportive care
description: >-
Severe cases may need coordinated feeding, respiratory, comfort-focused,
and goals-of-care support because the clinical spectrum includes early death
and profound spastic tetraparesis with epileptic encephalopathy.
treatment_term:
preferred_term: supportive care
term:
id: MAXO:0000950
label: supportive care
evidence:
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
reference_title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Disease severity ranged from early death (FIV:1 and FVII:1), profound
spastic tetraparesis with epileptic encephalopathy (FI:1, FII:1, FII:2,
FIII:1, FVI:1), to a milder phenotype with preserved ambulation and single
word communication (FV:1 and FV:2).
explanation: >-
The severe end of the spectrum supports anticipatory palliative and
complex supportive care planning.
references:
- reference: PMID:40791729
title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy.
findings: []
- reference: PMID:36070637
title: "Generation of human induced pluripotential stem cells from individuals with complex heterozygous, isogenic corrected, and homozygous Bloc1s1 mutations."
findings: []
- reference: url:https://www.medrxiv.org/content/10.1101/2025.07.17.25331211v1.full
title: BLOC1S1 variants cause lysosomal and autophagic defects resulting in a hypomyelinating leukodystrophy with epileptic encephalopathy | medRxiv
findings: []
This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.