Atelosteogenesis type III (FLNB-AO3) is a severe but variably survivable monoallelic FLNB gain-of-function skeletal dysplasia. It is characterized by severe short-limb disproportion, congenital large-joint dislocations, clubfeet, vertebral and long-bone abnormalities, and variable craniofacial, thoracic, and laryngotracheal involvement. Respiratory compromise can be life-threatening and may require invasive support, but survival into childhood and adulthood is documented; it should not be modeled as uniformly perinatal lethal.
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Conditions with similar clinical presentations that must be differentiated from Atelosteogenesis Type III:
name: Atelosteogenesis Type III
creation_date: '2026-03-04T07:57:38Z'
category: Mendelian
description: >
Atelosteogenesis type III (FLNB-AO3) is a severe but variably survivable
monoallelic FLNB gain-of-function skeletal dysplasia. It is characterized by
severe short-limb disproportion, congenital large-joint dislocations,
clubfeet, vertebral and long-bone abnormalities, and variable craniofacial,
thoracic, and laryngotracheal involvement. Respiratory compromise can be
life-threatening and may require invasive support, but survival into childhood
and adulthood is documented; it should not be modeled as uniformly perinatal
lethal.
disease_term:
preferred_term: atelosteogenesis type III
term:
id: MONDO:0007168
label: atelosteogenesis type III
parents:
- Skeletal Dysplasia
synonyms:
- FLNB-related atelosteogenesis type 3
- Atelosteogenesis type 3
- AO3
- AOIII
- Atelosteogenesis type 3, FLNB-related
classifications:
isds_skeletal_category:
- classification_value: filamin_and_related
notes: >-
ISDS Nosology and Classification of Genetic Skeletal Disorders, 2019
revision (Mortier et al., PMID:31633310), Table 1 group 7 "Filamin group and
related disorders"; listed as "Atelosteogenesis type 3 (AO3)".
mappings:
mondo_mappings:
- term:
id: MONDO:0007168
label: atelosteogenesis type III
mapping_predicate: skos:exactMatch
mapping_source: Orphadata ORPHA:56305
mapping_justification: >
The current Orphadata cross-reference record lists MONDO:0007168 as a
validated exact mapping for ORPHA:56305.
references:
- reference: PMID:20301736
title: FLNB-Related Disorders.
tags:
- GeneReviews
findings: []
external_assertions:
- name: Orphadata Atelosteogenesis type III record
source: Orphanet
assertion_type: structured_disease_record
external_id: ORPHA:56305
url: https://api.orphadata.com/rd-cross-referencing/orphacodes/56305
description: >
The current Orphadata record identifies ORPHA:56305 as Atelosteogenesis type
III and maps it exactly to MONDO:0007168 and OMIM:108721.
evidence:
- reference: url:https://api.orphadata.com/rd-cross-referencing/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-cross-referencing/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: '"Preferred term": "Atelosteogenesis type III"'
explanation: The current Orphadata record supplies the preferred disease identity.
- reference: url:https://api.orphadata.com/rd-cross-referencing/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-cross-referencing/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: '"Reference": "0007168", "Source": "MONDO"'
explanation: Orphadata records the exact MONDO cross-reference used by this entry.
definitions:
- name: FLNB-AO3 spectrum definition
definition_type: OTHER
description: >
A severe monoallelic FLNB gain-of-function disorder within a continuous
phenotypic spectrum that also includes FLNB-related Larsen syndrome and
FLNB-AO1. AO3 shares severe short-limb dwarfism, large-joint dislocations,
and clubfeet with AO1, while postneonatal and adult survival distinguishes
the possible AO3 course from perinatal-lethal AO1.
evidence:
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Monoallelic gain-of-function pathogenic variants in FLNB cause a spectrum
of phenotypic severity ranging from apparently isolated clubfoot to Larsen
syndrome (FLNB-LS), atelosteogenesis type 3 (FLNB-AO3), and
atelosteogenesis type 1 (FLNB-AO1), which is perinatal lethal.
explanation: The current GeneReviews update defines AO3 within the monoallelic FLNB gain-of-function spectrum.
- reference: PMID:10076882
reference_title: "Atelosteogenesis type III: long term survival, prenatal diagnosis, and evidence for dominant transmission."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
This is the first documentation of survival to adulthood of an individual
with this disorder, of prenatal diagnostic assessment of an affected
individual, and of vertical transmission suggestive of autosomal dominant
inheritance.
explanation: The mother-son report establishes that AO3 can be compatible with adult survival and vertical transmission.
inheritance:
- name: Autosomal dominant FLNB disorder
inheritance_term:
preferred_term: Autosomal dominant inheritance
term:
id: HP:0000006
label: Autosomal dominant inheritance
description: >
FLNB-AO3 follows an autosomal dominant disease model and is caused by a
heterozygous gain-of-function FLNB pathogenic variant. Both vertical
transmission and occurrence in an apparently simplex family are possible;
parental mosaicism and marked intrafamilial severity differences must be
considered in recurrence counseling.
evidence:
- reference: PMID:14991055
reference_title: "Mutations in the gene encoding filamin B disrupt vertebral segmentation, joint formation and skeletogenesis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We found homozygosity or compound heterozygosity with respect to stop-codon mutations in autosomal recessive spondylocarpotarsal syndrome (SCT, OMIM 272460) and missense mutations in individuals with autosomal dominant Larsen syndrome (OMIM 150250) and the perinatal lethal atelosteogenesis I and III phenotypes (AOI, OMIM 108720; AOIII, OMIM 108721).
explanation: >-
This directly supports autosomal dominant inheritance for the AOIII FLNB phenotype.
- reference: PMID:10076882
reference_title: "Atelosteogenesis type III: long term survival, prenatal diagnosis, and evidence for dominant transmission."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We describe two additional instances of atelosteogenesis, type III, in a
woman and her son.
explanation: A mother-son pair provides direct evidence that AO3 can be transmitted vertically.
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Comparatively mild (e.g., FLNB-LS) and severe (e.g., FLNB-AO3) forms of
the autosomal dominant FLNB-related disorders can occur in the same
family.
explanation: GeneReviews documents dominant inheritance with substantial within-family phenotypic variability.
prevalence:
- population: Worldwide literature
measure_type: CASES_IN_LITERATURE
prevalence_class: ULTRA_RARE
notes: >-
Current Orphadata records 25 worldwide cases/families. This is a case count,
not a denominator-based prevalence estimate.
evidence:
- reference: url:https://api.orphadata.com/rd-epidemiology/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-epidemiology/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: >-
"PrevalenceQualification": "Case(s)", "PrevalenceType":
"Cases/families", "PrevalenceValidationStatus": "Validated", "Source":
"ORPHANET", "ValMoy": "25.0"
explanation: Orphadata supplies the validated worldwide case/family count of 25.
- population: Worldwide
measure_type: POINT_PREVALENCE
prevalence_class: BELOW_1_IN_1000000
notes: >-
Orphadata provides a class-only point-prevalence estimate below one per
million; no numeric rate is imputed from the class.
evidence:
- reference: url:https://api.orphadata.com/rd-epidemiology/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-epidemiology/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: '"PrevalenceClass": "<1 / 1 000 000"'
explanation: The current Orphadata epidemiology record supplies the worldwide point-prevalence class.
progression:
- phase: Congenital presentation with variable postnatal survival
age_range: Prenatal period to adulthood
notes: >-
Skeletal abnormalities are present prenatally or at birth. Severe respiratory
compromise can cause early death or require invasive support, yet survival
beyond infancy and into adulthood is documented. The sparse case literature
does not support a single deterministic survival trajectory.
evidence:
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
In individuals with FLNB-AO3, survival beyond the neonatal period is
possible with intensive and invasive respiratory support.
explanation: GeneReviews summarizes the severe respiratory course while explicitly recognizing postneonatal survival.
- reference: PMID:10076882
reference_title: "Atelosteogenesis type III: long term survival, prenatal diagnosis, and evidence for dominant transmission."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
This is the first documentation of survival to adulthood of an individual
with this disorder, of prenatal diagnostic assessment of an affected
individual, and of vertical transmission suggestive of autosomal dominant
inheritance.
explanation: The report demonstrates that the AO3 course can extend from prenatal recognition through adulthood.
clinical_burden:
burden_level: HIGH
rationale: >-
AO3 imposes high typical burden through major congenital skeletal
deformity, joint dislocations, impaired mobility, and potentially severe
airway or respiratory disease. Burden is variable rather than uniformly
lethal: some individuals require tracheostomy or other invasive respiratory
support, while long-term survivors require continuing orthopedic care.
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The infant experienced recurrent apnea and persistent severe
tracheomalacia, which necessitated tracheostomy at 5 months of age.
explanation: This survivor required invasive airway management, supporting high clinical burden.
- reference: PMID:27258362
reference_title: "Atelosteogenesis type III: orthopedic management."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We report the case and orthopedic management of a 6-year-old female
patient with atelosteogenesis type III after 3 years of follow-up.
explanation: A long-term survivor required multiyear orthopedic follow-up and management.
pathophysiology:
- name: Monoallelic FLNB gain-of-function cytoskeletal disorder
description: >
FLNB-AO3 is caused by heterozygous gain-of-function FLNB variants. Filamin B
cross-links actin, links membrane proteins to the cytoskeleton, and provides
a scaffold for signaling and trafficking. AO1/AO3 variants cluster in the
CH2 actin-binding domain and in repeats 14-15, but the precise protein
interactions or novel interactions responsible for AO3 are not resolved;
the entry therefore does not assign one variant-universal biochemical
effect.
genes:
- preferred_term: FLNB
term:
id: hgnc:3755
label: FLNB
molecular_functions:
- preferred_term: actin filament binding
term:
id: GO:0051015
label: actin filament binding
cell_types:
- preferred_term: Chondrocyte
term:
id: CL:0000138
label: chondrocyte
biological_processes:
- preferred_term: Actin filament organization
term:
id: GO:0007015
label: actin filament organization
modifier: ABNORMAL
- preferred_term: Cytoskeleton organization
term:
id: GO:0007010
label: cytoskeleton organization
modifier: ABNORMAL
evidence:
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Monoallelic gain-of-function pathogenic variants in FLNB cause a spectrum
of phenotypic severity ranging from apparently isolated clubfoot to Larsen
syndrome (FLNB-LS), atelosteogenesis type 3 (FLNB-AO3), and
atelosteogenesis type 1 (FLNB-AO1), which is perinatal lethal.
explanation: GeneReviews establishes the monoallelic gain-of-function classification for FLNB-AO3.
- reference: PMID:14991055
reference_title: "Mutations in the gene encoding filamin B disrupt vertebral segmentation, joint formation and skeletogenesis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The filamins are cytoplasmic proteins that regulate the structure and
activity of the cytoskeleton by cross-linking actin into three-dimensional
networks, linking the cell membrane to the cytoskeleton and serving as
scaffolds on which intracellular signaling and protein trafficking
pathways are organized (reviewed in refs. 1,2).
explanation: >-
The causal gene's established protein functions supply the cytoskeletal context without specifying an AO3-only downstream interaction.
- reference: PMID:16752402
reference_title: "Mutations in two regions of FLNB result in atelosteogenesis I and III."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The majority of the mutations resided in exon 2 and exon 3, which encode
the CH2 domain of the actin-binding region of filamin B. The remaining
mutations were found in exon 28 and exon 29, which encode repeats 14 and
15 of filamin B.
explanation: The AO1/AO3 patient series identifies two recurrent FLNB variant clusters.
downstream:
- target: Abnormal joint formation, vertebral development, and endochondral ossification
description: >
Human developmental-expression and disease-association data connect FLNB
to growth-plate, joint, vertebral, and ossification phenotypes, but do not
resolve the complete molecular-to-tissue chain for AO3.
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
evidence:
- reference: PMID:14991055
reference_title: "Mutations in the gene encoding filamin B disrupt vertebral segmentation, joint formation and skeletogenesis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We found that filamin B is expressed in human growth plate chondrocytes
explanation: Developmental expression supports the proposed tissue bridge, while the intermediate causal steps remain unresolved.
- name: Abnormal joint formation, vertebral development, and endochondral ossification
description: >
Filamin B has a developmental role in joint formation, vertebral
segmentation, and endochondral ossification. In AO3, disruption of these
processes provides a bounded tissue-level explanation for congenital joint
dislocations, severe limb and long-bone abnormalities, and vertebral
dysplasia. Clinical occurrence supports endpoint placement but generally
does not prove directness of individual edges.
cell_types:
- preferred_term: Growth plate chondrocyte
term:
id: CL:1000217
label: growth plate cartilage chondrocyte
biological_processes:
- preferred_term: Embryonic skeletal joint development
term:
id: GO:0072498
label: embryonic skeletal joint development
modifier: ABNORMAL
- preferred_term: Cartilage development
term:
id: GO:0051216
label: cartilage development
modifier: ABNORMAL
- preferred_term: Endochondral ossification
term:
id: GO:0001958
label: endochondral ossification
modifier: ABNORMAL
evidence:
- reference: PMID:14991055
reference_title: "Mutations in the gene encoding filamin B disrupt vertebral segmentation, joint formation and skeletogenesis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
These data indicate an unexpected role in vertebral segmentation, joint
formation and endochondral ossification for this ubiquitously expressed
cytoskeletal protein.
explanation: The discovery series directly identifies the relevant developmental processes.
- reference: PMID:16752402
reference_title: "Mutations in two regions of FLNB result in atelosteogenesis I and III."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
AOI and AOIII are autosomal dominant lethal skeletal dysplasias
characterized by overlapping clinical findings that include vertebral
abnormalities, disharmonious skeletal maturation, hypoplastic long bones,
and joint dislocations.
explanation: The AO1/AO3 series links FLNB variants to the principal skeletal-development endpoints, although later reports establish that AO3 is not uniformly lethal.
downstream:
- target: Thoracic and laryngotracheal insufficiency
description: >
Abnormal skeletal and cartilage development can involve the thorax and
laryngotracheal structures, but the precise tissue bridge is not defined.
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The infant experienced recurrent apnea and persistent severe
tracheomalacia, which necessitated tracheostomy at 5 months of age.
explanation: A clinical case supports respiratory involvement, not the direct molecular-to-airway route.
- target: Disproportionate Short-Limb Short Stature
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:2368807
reference_title: "Atelosteogenesis type III: a distinct skeletal dysplasia with features overlapping atelosteogenesis and oto-palato-digital syndrome type II."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We present 5 cases of a short-limb dwarfism syndrome whose manifestations
overlap those of atelosteogenesis and oto-palato-digital syndrome Type
II.
explanation: The founding series supports the endpoint; developmental intermediates are modeled rather than directly tested.
- target: Rhizomelia
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: There was rhizomelic shortness of the limbs and a club-foot.
explanation: Clinical occurrence supports endpoint placement; the intervening developmental chain is inferred.
- target: Large Joint Dislocations
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
FLNB-AO1 and FLNB-AO3 are characterized by severe short-limbed dwarfism;
dislocated hips, knees, and elbows; and clubfeet.
explanation: GeneReviews supports the endpoint, while the edge's developmental intermediates remain modeled.
- target: Talipes Equinovarus
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
FLNB-AO1 and FLNB-AO3 are characterized by severe short-limbed dwarfism;
dislocated hips, knees, and elbows; and clubfeet.
explanation: GeneReviews supports the endpoint, while the edge's developmental intermediates remain modeled.
- target: Aplasia/Hypoplasia of the Humerus
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Radiological examination demonstrated striking hypoplasia of the humerus
with proximal rounding and distal tapering giving a 'drumstick'
appearance, 'S'-shape configuration of the cervical spine, scoliosis and
coronal cleft in the thoracolumbar vertebral bodies.
explanation: The radiograph supports the endpoint, while causal directness is not tested.
- target: Coronal Cleft Vertebrae
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Radiological examination demonstrated striking hypoplasia of the humerus
with proximal rounding and distal tapering giving a 'drumstick'
appearance, 'S'-shape configuration of the cervical spine, scoliosis and
coronal cleft in the thoracolumbar vertebral bodies.
explanation: The radiograph supports the endpoint, while causal directness is not tested.
- target: Scoliosis
causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Radiological examination demonstrated striking hypoplasia of the humerus
with proximal rounding and distal tapering giving a 'drumstick'
appearance, 'S'-shape configuration of the cervical spine, scoliosis and
coronal cleft in the thoracolumbar vertebral bodies.
explanation: The radiograph supports the endpoint, while causal directness is not tested.
- target: Hypertelorism
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The patient had multiple craniofacial abnormalities at birth, including
ocular hypertelorism, a flat nasal bridge, micrognathia and a cleft
palate.
explanation: Clinical occurrence supports the endpoint; the intervening craniofacial mechanism is unknown.
- target: Depressed Nasal Bridge
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The patient had multiple craniofacial abnormalities at birth, including
ocular hypertelorism, a flat nasal bridge, micrognathia and a cleft
palate.
explanation: Clinical occurrence supports the endpoint; the intervening craniofacial mechanism is unknown.
- target: Micrognathia
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The patient had multiple craniofacial abnormalities at birth, including
ocular hypertelorism, a flat nasal bridge, micrognathia and a cleft
palate.
explanation: Clinical occurrence supports the endpoint; the intervening craniofacial mechanism is unknown.
- target: Cleft Palate
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The patient had multiple craniofacial abnormalities at birth, including
ocular hypertelorism, a flat nasal bridge, micrognathia and a cleft
palate.
explanation: Clinical occurrence supports the endpoint; the intervening craniofacial mechanism is unknown.
- target: Broad Thumb
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The infant had short broad thumbs in the hands similar to those observed
in the feet.
explanation: Clinical occurrence supports the endpoint; the precise developmental intermediates are unknown.
- name: Thoracic and laryngotracheal insufficiency
description: >
AO3 can combine thoracic hypoplasia with laryngotracheomalacia and other
respiratory insufficiency. The relative contribution of thoracic restriction,
airway instability, and pulmonary factors varies among individuals and is
not quantified by the sparse case literature.
cell_types:
- preferred_term: Chondrocyte
term:
id: CL:0000138
label: chondrocyte
biological_processes:
- preferred_term: Trachea development
term:
id: GO:0060438
label: trachea development
modifier: ABNORMAL
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The infant experienced recurrent apnea and persistent severe
tracheomalacia, which necessitated tracheostomy at 5 months of age.
explanation: This case directly documents severe airway instability and respiratory events in AO3.
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: '"HPOId": "HP:0002093", "HPOTerm": "Respiratory insufficiency"'
explanation: Current Orphadata independently records respiratory insufficiency in the AO3 phenotype set.
downstream:
- target: Laryngotracheomalacia
causal_link_type: UNKNOWN
evidence:
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: '"HPOId": "HP:0008755", "HPOTerm": "Laryngotracheomalacia"'
explanation: Structured data support the endpoint, while this modeled edge is close to a part-whole relation rather than a proven directional mechanism.
- target: Respiratory Insufficiency
causal_link_type: UNKNOWN
evidence:
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: '"HPOId": "HP:0002093", "HPOTerm": "Respiratory insufficiency"'
explanation: Structured data support the endpoint, not the relative contribution of airway and thoracic mechanisms.
- target: Apnea
causal_link_type: UNKNOWN
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The infant experienced recurrent apnea and persistent severe
tracheomalacia, which necessitated tracheostomy at 5 months of age.
explanation: The case supports co-occurring apnea and tracheomalacia, but not a universal causal direction.
- target: Thoracic Hypoplasia
causal_link_type: UNKNOWN
evidence:
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: '"HPOId": "HP:0005257", "HPOTerm": "Thoracic hypoplasia"'
explanation: Structured data support thoracic hypoplasia as part of AO3, while edge direction is not established.
genetic:
- name: Heterozygous gain-of-function FLNB pathogenic variants
association: CAUSATIVE
relationship_type: CAUSATIVE
variant_origin: GERMLINE
gene_term:
preferred_term: FLNB
term:
id: hgnc:3755
label: FLNB
notes: >
Heterozygous gain-of-function FLNB variants cause AO3. The same recurrent
variant can span AO1/AO3 or broader FLNB phenotypes, so variant identity
alone does not fully predict clinical severity.
evidence:
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
The diagnosis of other FLNB-related disorders (LS, AO1, AO3) is
established in a proband by identification of a heterozygous
gain-of-function pathogenic variant in FLNB by molecular genetic testing.
explanation: GeneReviews defines the causative allele class for FLNB-AO3.
- reference: PMID:14991055
reference_title: "Mutations in the gene encoding filamin B disrupt vertebral segmentation, joint formation and skeletogenesis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We identified mutations in the gene encoding filamin B in four human skeletal disorders.
explanation: >-
This provides direct genetic evidence linking FLNB mutations to severe human skeletal disorders including AOIII.
- reference: PMID:14991055
reference_title: "Mutations in the gene encoding filamin B disrupt vertebral segmentation, joint formation and skeletogenesis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We found homozygosity or compound heterozygosity with respect to stop-codon mutations in autosomal recessive spondylocarpotarsal syndrome (SCT, OMIM 272460) and missense mutations in individuals with autosomal dominant Larsen syndrome (OMIM 150250) and the perinatal lethal atelosteogenesis I and III phenotypes (AOI, OMIM 108720; AOIII, OMIM 108721).
explanation: >-
This explicitly names missense FLNB mutations in AOIII.
phenotypes:
- name: Disproportionate Short-Limb Short Stature
description: >
AOIII is a severe short-limbed skeletal dysplasia with disproportionate limb
shortening.
phenotype_term:
preferred_term: Disproportionate short-limb short stature
term:
id: HP:0008873
label: Disproportionate short-limb short stature
evidence:
- reference: PMID:2368807
reference_title: "Atelosteogenesis type III: a distinct skeletal dysplasia with features overlapping atelosteogenesis and oto-palato-digital syndrome type II."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We present 5 cases of a short-limb dwarfism syndrome whose manifestations overlap those of atelosteogenesis and oto-palato-digital syndrome Type II.
explanation: >-
The original AOIII case series directly identifies the condition as a short-limb dwarfism syndrome.
- reference: PMID:20301736
reference_title: "FLNB-Related Disorders."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
FLNB-AO1 and FLNB-AO3 are characterized by severe short-limbed dwarfism; dislocated hips, knees, and elbows; and clubfeet.
explanation: >-
GeneReviews summarizes AOIII within the FLNB spectrum as severe short-limbed dwarfism.
- name: Rhizomelia
description: >
Rhizomelic shortening of the limbs is a key skeletal feature.
phenotype_term:
preferred_term: Rhizomelia
term:
id: HP:0008905
label: Rhizomelia
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
There was rhizomelic shortness of the limbs and a club-foot.
explanation: >-
This directly supports rhizomelic limb shortening.
- name: Large Joint Dislocations
description: >
Congenital dislocations involving the hips, knees, and elbows are part of
the core appendicular phenotype.
phenotype_term:
preferred_term: Large joint dislocations
term:
id: HP:0005008
label: Large joint dislocations
evidence:
- reference: PMID:16752402
reference_title: "Mutations in two regions of FLNB result in atelosteogenesis I and III."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
AOI and AOIII are autosomal dominant lethal skeletal dysplasias characterized by overlapping clinical findings that include vertebral abnormalities, disharmonious skeletal maturation, hypoplastic long bones, and joint dislocations.
explanation: >-
This primary AOI/AOIII mutation series directly identifies joint dislocations as part of the shared phenotype.
- reference: PMID:20301736
reference_title: "FLNB-Related Disorders."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
FLNB-AO1 and FLNB-AO3 are characterized by severe short-limbed dwarfism; dislocated hips, knees, and elbows; and clubfeet.
explanation: >-
GeneReviews localizes the dislocations to the large joints most often emphasized in AOIII.
- name: Talipes Equinovarus
description: >
Club-foot deformity is present at birth.
phenotype_term:
preferred_term: Talipes equinovarus
term:
id: HP:0001762
label: Talipes equinovarus
frequency: FREQUENT
evidence:
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: >-
"HPOId": "HP:0001762", "HPOTerm": "Talipes equinovarus" },
"HPOFrequency": "Frequent (79-30%)"
explanation: Current Orphadata classifies talipes equinovarus as frequent (79-30%) in AO3.
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
There was rhizomelic shortness of the limbs and a club-foot.
explanation: >-
This directly supports talipes equinovarus (club-foot).
- name: Aplasia/Hypoplasia of the Humerus
description: >
Severe humeral underdevelopment is a striking radiographic feature.
phenotype_term:
preferred_term: Aplasia/hypoplasia of the humerus
term:
id: HP:0006507
label: Aplasia/hypoplasia of the humerus
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Radiological examination demonstrated striking hypoplasia of the humerus with proximal rounding and distal tapering giving a 'drumstick' appearance, 'S'-shape configuration of the cervical spine, scoliosis and coronal cleft in the thoracolumbar vertebral bodies.
explanation: >-
This directly supports humeral hypoplasia.
- name: Coronal Cleft Vertebrae
description: >
Coronal clefting of thoracolumbar vertebrae indicates severe vertebral dysplasia.
phenotype_term:
preferred_term: Coronal cleft vertebrae
term:
id: HP:0003417
label: Coronal cleft vertebrae
frequency: FREQUENT
evidence:
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: >-
"HPOId": "HP:0003417", "HPOTerm": "Coronal cleft vertebrae" },
"HPOFrequency": "Frequent (79-30%)"
explanation: Current Orphadata classifies coronal cleft vertebrae as frequent (79-30%) in AO3.
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Radiological examination demonstrated striking hypoplasia of the humerus with proximal rounding and distal tapering giving a 'drumstick' appearance, 'S'-shape configuration of the cervical spine, scoliosis and coronal cleft in the thoracolumbar vertebral bodies.
explanation: >-
This directly supports coronal cleft vertebral abnormalities.
- name: Scoliosis
description: >
Spinal curvature abnormality is part of the AOIII axial skeletal phenotype.
phenotype_term:
preferred_term: Scoliosis
term:
id: HP:0002650
label: Scoliosis
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Radiological examination demonstrated striking hypoplasia of the humerus with proximal rounding and distal tapering giving a 'drumstick' appearance, 'S'-shape configuration of the cervical spine, scoliosis and coronal cleft in the thoracolumbar vertebral bodies.
explanation: >-
This directly supports scoliosis.
- name: Hypertelorism
description: >
Ocular hypertelorism contributes to the characteristic craniofacial pattern.
phenotype_term:
preferred_term: Hypertelorism
term:
id: HP:0000316
label: Hypertelorism
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The patient had multiple craniofacial abnormalities at birth, including ocular hypertelorism, a flat nasal bridge, micrognathia and a cleft palate.
explanation: >-
This directly supports hypertelorism.
- name: Depressed Nasal Bridge
description: >
Nasal bridge depression is part of AOIII facial dysmorphism.
phenotype_term:
preferred_term: Depressed nasal bridge
term:
id: HP:0005280
label: Depressed nasal bridge
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The patient had multiple craniofacial abnormalities at birth, including ocular hypertelorism, a flat nasal bridge, micrognathia and a cleft palate.
explanation: >-
This supports a depressed/flat nasal bridge phenotype.
- name: Micrognathia
description: >
Mandibular hypoplasia is a recurrent craniofacial abnormality.
phenotype_term:
preferred_term: Micrognathia
term:
id: HP:0000347
label: Micrognathia
frequency: OCCASIONAL
evidence:
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: >-
"HPOId": "HP:0000347", "HPOTerm": "Micrognathia" },
"HPOFrequency": "Occasional (29-5%)"
explanation: Current Orphadata classifies micrognathia as occasional (29-5%) in AO3.
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The patient had multiple craniofacial abnormalities at birth, including ocular hypertelorism, a flat nasal bridge, micrognathia and a cleft palate.
explanation: >-
This directly supports micrognathia.
- name: Cleft Palate
description: >
Cleft palate is part of the craniofacial spectrum in AOIII.
phenotype_term:
preferred_term: Cleft palate
term:
id: HP:0000175
label: Cleft palate
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The patient had multiple craniofacial abnormalities at birth, including ocular hypertelorism, a flat nasal bridge, micrognathia and a cleft palate.
explanation: >-
This directly supports cleft palate.
- name: Broad Thumb
description: >
Broad thumbs are part of the distal limb malformation pattern.
phenotype_term:
preferred_term: Broad thumb
term:
id: HP:0011304
label: Broad thumb
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The infant had short broad thumbs in the hands similar to those observed in the feet.
explanation: >-
This directly supports broad thumbs.
- name: Laryngotracheomalacia
description: >
Laryngeal and/or tracheal airway malacia can contribute to severe respiratory
compromise and the need for invasive airway support.
phenotype_term:
preferred_term: Laryngotracheomalacia
term:
id: HP:0008755
label: Laryngotracheomalacia
frequency: OCCASIONAL
evidence:
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: >-
"HPOId": "HP:0008755", "HPOTerm": "Laryngotracheomalacia" },
"HPOFrequency": "Occasional (29-5%)"
explanation: Current Orphadata classifies laryngotracheomalacia as occasional (29-5%) in AO3.
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The infant experienced recurrent apnea and persistent severe tracheomalacia, which necessitated tracheostomy at 5 months of age.
explanation: >-
This directly supports the tracheal component of laryngotracheomalacia as a major AO3 complication.
- name: Apnea
description: >
Recurrent apnea has been documented in surviving infants with severe airway
involvement.
phenotype_term:
preferred_term: Apnea
term:
id: HP:0002104
label: Apnea
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The infant experienced recurrent apnea and persistent severe tracheomalacia, which necessitated tracheostomy at 5 months of age.
explanation: >-
This directly supports recurrent apnea as part of the respiratory phenotype.
- name: Respiratory Insufficiency
description: >
Respiratory insufficiency is a frequent component of AO3 and may reflect
varying contributions from thoracic restriction and airway malacia.
phenotype_term:
preferred_term: Respiratory insufficiency
term:
id: HP:0002093
label: Respiratory insufficiency
frequency: FREQUENT
evidence:
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: >-
"HPOId": "HP:0002093", "HPOTerm": "Respiratory insufficiency" },
"HPOFrequency": "Frequent (79-30%)"
explanation: Current Orphadata classifies respiratory insufficiency as frequent (79-30%) in AO3.
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
In individuals with FLNB-AO3, survival beyond the neonatal period is
possible with intensive and invasive respiratory support.
explanation: The need for intensive respiratory support in some survivors supports clinically important respiratory insufficiency.
- name: Thoracic Hypoplasia
description: >
A hypoplastic thorax can add a restrictive component to respiratory burden
in a subset of individuals.
phenotype_term:
preferred_term: Thoracic hypoplasia
term:
id: HP:0005257
label: Thoracic hypoplasia
frequency: OCCASIONAL
evidence:
- reference: url:https://api.orphadata.com/rd-phenotypes/orphacodes/56305
reference_title: "https://api.orphadata.com/rd-phenotypes/orphacodes/56305"
supports: SUPPORT
evidence_source: OTHER
snippet: >-
"HPOId": "HP:0005257", "HPOTerm": "Thoracic hypoplasia" },
"HPOFrequency": "Occasional (29-5%)"
explanation: Current Orphadata classifies thoracic hypoplasia as occasional (29-5%) in AO3.
diagnosis:
- name: Clinical and Skeletal Radiographic Evaluation
description: >
Prenatal or postnatal imaging can identify the AO3 pattern of severe
short-limb dysplasia, congenital dislocations, humeral and other long-bone
abnormalities, and vertebral clefting or curvature. Because AO3 overlaps
AO1, Larsen syndrome, atelosteogenesis type II, and otopalatodigital type II,
radiography establishes a pattern and differential rather than a gene-level
diagnosis.
diagnosis_term:
preferred_term: radiograph imaging procedure
term:
id: NCIT:C38101
label: X-Ray Imaging
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Radiological examination demonstrated striking hypoplasia of the humerus with proximal rounding and distal tapering giving a 'drumstick' appearance, 'S'-shape configuration of the cervical spine, scoliosis and coronal cleft in the thoracolumbar vertebral bodies.
explanation: >-
This supports the diagnostic importance of distinctive radiographic skeletal abnormalities.
- name: Molecular FLNB Confirmation and Spectrum Assignment
description: >
Molecular diagnosis requires identification of a heterozygous
gain-of-function pathogenic FLNB variant. The variant must be interpreted
together with the clinical-radiographic phenotype because FLNB-AO3 overlaps
a broader allelic spectrum and individual variants do not always predict a
single severity category.
diagnosis_term:
preferred_term: molecular genetic testing
term:
id: NCIT:C19770
label: Molecular Analysis
qualifiers:
- predicate:
preferred_term: has participant
term:
id: RO:0000057
label: has participant
value:
preferred_term: FLNB
term:
id: hgnc:3755
label: FLNB
results: A heterozygous gain-of-function pathogenic FLNB variant.
evidence:
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
The diagnosis of other FLNB-related disorders (LS, AO1, AO3) is
established in a proband by identification of a heterozygous
gain-of-function pathogenic variant in FLNB by molecular genetic testing.
explanation: >-
GeneReviews defines molecular confirmation for AO3 and the overlapping dominant FLNB spectrum.
treatments:
- name: Individualized Respiratory and Airway Support
description: >
Respiratory assessment should distinguish thoracic restriction from upper-
and central-airway instability. Support is individualized; some infants may
require prolonged ventilation, tracheostomy, or other invasive airway care,
while published survival and severity vary. A single case requiring
tracheostomy demonstrates possibility, not a universal treatment rule.
treatment_term:
preferred_term: supportive care
term:
id: NCIT:C15747
label: Supportive Care
evidence:
- reference: PMID:1442028
reference_title: "Atelosteogenesis type 3: the first patient in Japan and a survivor for more than 1 year."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The infant experienced recurrent apnea and persistent severe tracheomalacia, which necessitated tracheostomy at 5 months of age.
explanation: >-
The case demonstrates that severe AO3 airway disease can require tracheostomy.
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
In individuals with FLNB-AO3, survival beyond the neonatal period is
possible with intensive and invasive respiratory support.
explanation: GeneReviews supports planning for intensive respiratory support in selected individuals while acknowledging survival variability.
- name: Individualized Orthopedic Follow-up in Survivors
description: >
Long-term survivors require individualized orthopedic assessment of joint
dislocations, spinal curvature, limb deformity, mobility, and function. The
published AO3 management literature is case-based, so no single operation or
schedule is generalized to all affected individuals.
treatment_term:
preferred_term: orthopedic procedure
term:
id: NCIT:C16186
label: Orthopedic Surgical Procedure
evidence:
- reference: PMID:27258362
reference_title: "Atelosteogenesis type III: orthopedic management."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
In the literature, an orthopedic management for this disorder has not
been well described. We report the case and orthopedic management of a
6-year-old female patient with atelosteogenesis type III after 3 years of
follow-up.
explanation: The report demonstrates multiyear orthopedic management but also shows that the evidence base is limited to case experience.
- name: Genetic Counseling and Parental Evaluation
description: >
Counseling should explain autosomal dominant inheritance, the possibility of
de novo or inherited disease, parental somatic or gonadal mosaicism, marked
phenotypic variability, and a 50% transmission risk from a constitutional
heterozygous individual. Evaluation of parents for the familial variant and
subtle FLNB-spectrum findings refines recurrence counseling.
treatment_term:
preferred_term: genetic counseling
term:
id: NCIT:C15240
label: Genetic Counseling
evidence:
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
FLNB-LS, FLNB-AO1, FLNB-AO3, and FLNB-related apparently isolated clubfoot
are inherited in an autosomal dominant manner.
explanation: GeneReviews establishes the inheritance model underlying counseling.
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Each child of a proband who is heterozygous for an FLNB pathogenic variant
has a 50% chance of inheriting the pathogenic variant.
explanation: GeneReviews provides the transmission risk for a constitutional heterozygous parent.
differential_diagnoses:
- name: Atelosteogenesis type I
description: >
The perinatal-lethal FLNB-AO1 end of the same gain-of-function spectrum can
overlap AO3 in skeletal and joint findings. Persistent postneonatal or adult
survival supports AO3, whereas AO1 is defined as perinatal lethal in current
GeneReviews scope; molecular results still require phenotype-level spectrum
interpretation.
disease_term:
preferred_term: atelosteogenesis type I
term:
id: MONDO:0007167
label: atelosteogenesis type I
distinguishing_features:
- FLNB-AO1 is defined as perinatal lethal in the current spectrum
- Survival beyond the neonatal period is possible in FLNB-AO3
evidence:
- reference: PMID:20301736
reference_title: FLNB-Related Disorders.
supports: SUPPORT
evidence_source: OTHER
snippet: >-
FLNB-AO1 is lethal in the perinatal period. At its most severe, the
spectrum of phenotypes assigned FLNB-AO1 can present with perinatal-lethal
micromelic dwarfism characterized by flipper-like limbs (polysyndactyly
with complete syndactyly of all fingers and toes, hypoplastic or absent
first digits, and duplicated intermediate and distal phalanges);
macrobrachycephaly; prominent forehead; hypertelorism; and proptosis.
explanation: GeneReviews supplies the perinatal-lethal AO1 boundary used to distinguish it from survivable AO3.
- name: Atelosteogenesis type II
description: >
A clinically and radiographically overlapping perinatal-lethal dysplasia in
the autosomal recessive SLC26A2 sulfate-transporter spectrum, with a
cartilage-matrix sulfation disorder rather than monoallelic FLNB gain of
function.
disease_term:
preferred_term: atelosteogenesis type II
term:
id: MONDO:0009727
label: atelosteogenesis type II
distinguishing_features:
- Biallelic SLC26A2 disorder rather than a heterozygous FLNB disorder
- Distinctive cartilage-matrix histopathology and sulfation pathogenesis
evidence:
- reference: PMID:9133349
reference_title: "Atelosteogenesis syndromes: a review, with comments on their pathogenesis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Atelosteogenesis type II shows distinctive chondro-osseous histopathology
with a major disturbance in cartilage matrix macromolecules.
explanation: The review identifies the cartilage-matrix distinction between AO2 and FLNB-related AO3.
- name: Larsen syndrome
description: >
A generally milder monoallelic FLNB gain-of-function disorder with
congenital large-joint dislocations, clubfeet, craniofacial findings, and
vertebral abnormalities. Larsen syndrome and AO3 are allelic and can overlap
within families, so severity and full radiographic pattern guide assignment.
disease_term:
preferred_term: Larsen syndrome
term:
id: MONDO:0007875
label: Larsen syndrome
distinguishing_features:
- Generally milder skeletal severity than AO3
- Allelic FLNB overlap and within-family variability limit rigid variant-only classification
evidence:
- reference: PMID:10076882
reference_title: "Atelosteogenesis type III: long term survival, prenatal diagnosis, and evidence for dominant transmission."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The clinical and radiologic phenotype of atelosteogenesis, type III
overlaps with that of another skeletal dysplasia, autosomal dominant
Larsen syndrome; these most likely represent allelic conditions.
explanation: The familial AO3 report explicitly identifies Larsen syndrome as an overlapping allelic differential.
- name: Otopalatodigital syndrome type II
description: >
A severe X-linked FLNA-related skeletal dysplasia with craniofacial, digital,
long-bone, and thoracic abnormalities that can resemble AO3. Sex-linked
inheritance, FLNA molecular findings, and the full radiographic pattern
distinguish it from autosomal dominant FLNB-AO3.
distinguishing_features:
- FLNA-related X-linked disorder rather than a heterozygous FLNB disorder
- The founding AO3 series found a distinct clinical, radiographic, genetic, and histologic pattern despite overlap
evidence:
- reference: PMID:2368807
reference_title: "Atelosteogenesis type III: a distinct skeletal dysplasia with features overlapping atelosteogenesis and oto-palato-digital syndrome type II."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Clinical, radiographic, genetic, and histologic data are presented which
demonstrate differences between our patients and previously reported
cases of these other conditions.
explanation: The founding series explicitly separates AO3 from phenotypically overlapping OPD2.
notes: >-
AO3 is a severe but variably survivable member of the monoallelic FLNB
gain-of-function spectrum. Historical publications sometimes called AO1 and
AO3 lethal together, but documented childhood and adult survivors make a
uniformly lethal AO3 model inaccurate. The proximal mechanism remains bounded:
FLNB gain of function, variant clustering, and roles in actin scaffolding,
joint formation, vertebral development, and endochondral ossification are
established, whereas the precise altered protein interactions and complete
variant-to-tissue chain are unresolved. A ClinicalTrials.gov search on
2026-07-21 identified no AO3-specific interventional studies, and no
disease-modifying treatment is established.
Broad hallux or another toe-specific HPO term.Atelosteogenesis Type III (AO3) is a rare and severe skeletal dysplasia characterized by profound abnormalities in bone development. Fewer than 25 cases have been reported worldwide (medlineplus.gov), reflecting an extremely low prevalence (on the order of <1 in 1,000,000 (www.orpha.net)). Clinically, AO3 falls on the severe end of the filamin B (FLNB)–related skeletal disorder spectrum, which also includes Larsen syndrome (milder) and Atelosteogenesis Type I (more severe, typically perinatal lethal) (www.ncbi.nlm.nih.gov) (www.ncbi.nlm.nih.gov). Affected infants present with disproportionate short-limb dwarfism, multiple joint dislocations, and distinctive craniofacial anomalies (www.ncbi.nlm.nih.gov). Most cases are diagnosed at birth or prenatally by ultrasound due to the striking skeletal abnormalities, and neonatal mortality is high because of chest wall hypoplasia and airway malformations leading to respiratory failure (medlineplus.gov). Rarely, with intensive medical support, infants have survived beyond the newborn period (medlineplus.gov).
AO3 is caused by mutations in the FLNB gene, which encodes the cytoskeletal protein filamin B (medlineplus.gov). Filamin B is an actin-binding protein that organizes the intracellular cytoskeleton and links it to the cell membrane, serving as a scaffold for signaling pathways (pubmed.ncbi.nlm.nih.gov). It is highly expressed in developing cartilage (growth plate chondrocytes) and bone structures during embryogenesis (pubmed.ncbi.nlm.nih.gov). Heterozygous missense mutations or small in-frame deletions in FLNB underlie AO3 (www.ncbi.nlm.nih.gov). These mutations produce an abnormal full-length filamin B protein that has a gain-of-function (neomorphic) effect, rather than a simple loss of function (www.ncbi.nlm.nih.gov) (medlineplus.gov). Mechanistically, the mutant filamin B interferes with normal chondrocyte proliferation and differentiation, disrupting endochondral ossification (the process by which cartilage is replaced by bone) (medlineplus.gov). This dominant-negative effect on cartilage development leads to impaired skeletal segmentation, joint formation, and bone mineralization (pubmed.ncbi.nlm.nih.gov). In a landmark 2004 study, researchers identified FLNB mutations in AO3 and related disorders, establishing that filamin B is crucial for vertebral segmentation and limb skeletogenesis (pubmed.ncbi.nlm.nih.gov). Recent experimental research (2024) in a mouse model further showed that an FLNB mutation can alter the number of ossification centers, implicating disrupted embryonic patterning (e.g. HOX gene–regulated segmentation) in AO3 pathogenesis (pmc.ncbi.nlm.nih.gov).
Inheritance Pattern: Atelosteogenesis III is inherited in an autosomal dominant manner (medlineplus.gov). In virtually all reported cases, the pathogenic FLNB variant arose de novo (a new mutation in the affected child), since individuals with AO3 rarely survive to reproduce (medlineplus.gov). Parents of affected infants typically have no family history of the disorder. However, there are rare instances of germline mosaicism – a mildly affected parent (often with a phenotype resembling a milder FLNB-related condition like Larsen syndrome) can carry the mutation in some cells and transmit a fully penetrant mutation to their child (www.ncbi.nlm.nih.gov) (www.ncbi.nlm.nih.gov). Such cases demonstrate the variable expressivity of FLNB mutations within families. Genetic testing confirms FLNB mutations in AO3 patients, which is important for definitive diagnosis and prenatal counseling (www.ncbi.nlm.nih.gov) (www.ncbi.nlm.nih.gov).
At the cellular level, mutant filamin B disrupts the architecture and signaling of chondrocytes (cartilage cells). Normally, filamin B cross-links actin filaments into networks and connects them to membrane proteins, helping chondrocytes maintain shape and respond to mechanical signals (pubmed.ncbi.nlm.nih.gov). It also acts as a scaffold for proteins that regulate chondrocyte maturation and division (pubmed.ncbi.nlm.nih.gov). In AO3, the gain-of-function FLNB mutation produces an aberrant filamin B protein that is still present (not truncated) but functionally misbehaves (medlineplus.gov). This abnormal protein can oligomerize and incorporate into the cytoskeleton, where it likely sequesters or mislocalizes binding partners, ultimately interfering with normal cartilage development (medlineplus.gov). Chondrocytes with mutant filamin B show reduced proliferation and abnormal differentiation, which means the growth plates cannot properly form bone tissue (medlineplus.gov). As a result, endochondral ossification is profoundly impaired – many skeletal elements remain partially cartilaginous or undersized in the fetus (www.ncbi.nlm.nih.gov). The developmental timing of ossification is also disrupted (“disharmonious skeletal maturation”), so some bones ossify late or irregularly (www.ncbi.nlm.nih.gov). Moreover, filamin B’s role in joint and spine development is deranged: the formation of normal joint capsules and segmented vertebrae requires filamin-mediated signaling, so mutations lead to joint malformations (e.g. failed separations, causing dislocations) and vertebral fusions (pubmed.ncbi.nlm.nih.gov). In summary, the FLNB mutation creates a dominant pathogenic protein that acts in a dominant-negative fashion within cartilage and bone cells, causing multi-system skeletal malformations characteristic of AO3 (pubmed.ncbi.nlm.nih.gov). No other major genes are known to cause AO3 — it is specifically a filamin B–related disorder, distinct from Atelosteogenesis type II (which is caused by a different gene and inherited recessively) (www.ncbi.nlm.nih.gov) . Ongoing research continues to probe how mutant filamin B perturbs developmental pathways; for instance, recent studies suggest it may affect genetic regulators of skeletal patterning (such as HOX genes), further explaining the abnormal skeletal segmentation observed in these patients (pmc.ncbi.nlm.nih.gov).
AO3 has distinctive and severe skeletal abnormalities apparent at birth. Key hallmark phenotypes include:
Severely shortened limbs: Affected infants have micromelic dwarfism, with extremely short arms and legs. Many limb bones are underdeveloped or even absent in severe cases, resulting in shortened upper and lower extremities (medlineplus.gov). The long bones that are present often appear poorly modeled (dysplastic) on X-rays, with flared metaphyses and tapered, thin diaphyses (www.ncbi.nlm.nih.gov).
Joint dislocations: There are multiple congenital joint dislocations, notably of the large joints. The hips, knees, and elbows are frequently dislocated or subluxed at birth (medlineplus.gov). This reflects the abnormal joint formation due to the FLNB mutation disrupting normal connective tissue and joint capsule development (pubmed.ncbi.nlm.nih.gov). Recurrent or fixed dislocations are a defining clinical feature, often requiring orthopedic management if the child survives (www.ncbi.nlm.nih.gov).
Clubfeet (foot deformities): Virtually all reported cases have bilateral clubfoot, where the feet are fixed in an inward- and upward-turning position (talipes equinovarus or similar deformity) (medlineplus.gov). This foot malposition is a common finding in filamin B disorders and is present at birth as part of the AO3 phenotype (www.ncbi.nlm.nih.gov).
Hand and finger anomalies: The hands and feet are unusually broad with short, thick fingers and toes (medlineplus.gov). Often the digits exhibit permanent flexion contractures (camptodactyly), and some may be partially fused (syndactyly) (medlineplus.gov). In severe cases (overlapping with AOI), there can be polysyndactyly or “flipper-like” appendages where digits are completely fused, although AO3 typically has distinct but broad digits (medlineplus.gov) (www.ncbi.nlm.nih.gov). These digital anomalies further reflect aberrant ossification in the hands and feet.
Spine and chest deformities: AO3 involves significant axial skeletal malformations. Many patients have vertebral anomalies – the spine may show segmentation defects (fused vertebrae or hemivertebrae) and abnormal curvature (scoliosis or lordosis) (www.ncbi.nlm.nih.gov). The rib cage is hypoplastic (underdeveloped) and narrow (medlineplus.gov), due to shortened ribs and abnormal costal cartilage development. This small thoracic cage severely compromises lung development and expansion, leading to respiratory insufficiency at birth (medlineplus.gov). The pelvis is also undersized and malformed, and some pelvic bones can be incompletely ossified or fused (medlineplus.gov). These axial skeletal defects contribute to the lethal respiratory complications and limited mobility associated with AO3.
Craniofacial features: Although primarily a bone disorder, AO3 has recognizable facial dysmorphism related to the underlying skeletal maldevelopment. Infants have a prominent, broad forehead and widely spaced eyes (hypertelorism) (medlineplus.gov). The midface is flattened with a depressed nasal bridge and small nose, due to midfacial hypoplasia (medlineplus.gov). Approximately half of patients have a cleft palate (an opening in the roof of the mouth) (medlineplus.gov), indicating incomplete fusion of the palatal bones. These craniofacial findings, while not life-threatening, are often noted in conjunction with the skeletal abnormalities and can aid in diagnosis.
Radiographic hallmarks of AO3 correlate with these phenotypes. X-rays typically show “punctate” or delayed ossification in many bones, distally tapering humeri, and vertebral fusion or coronal clefting, alongside the limb shortening and flared metaphyses (www.ncbi.nlm.nih.gov) (www.ncbi.nlm.nih.gov). The combination of rhizomelic limb shortening, joint dislocations, and a narrow thorax on prenatal ultrasound or postnatal radiographs is highly indicative of AO3 (www.ncbi.nlm.nih.gov) (medlineplus.gov). Genetic testing for FLNB mutations confirms the diagnosis and distinguishes AO3 from other skeletal dysplasias with overlapping features (such as Atelosteogenesis type II, which has a different genetic cause) (www.ncbi.nlm.nih.gov) .
Prognosis for AO3 is poor, given the critical respiratory issues from thoracic insufficiency. Most affected fetuses are either stillborn or die in the neonatal period due to respiratory failure despite intensive intervention (medlineplus.gov). Cervical spine instability (from vertebral anomalies) can further complicate early life and contribute to mortality (www.ncbi.nlm.nih.gov). A small number of patients have survived beyond infancy with tracheostomies, ventilatory support, and multiple orthopedic surgeries; in these cases, developmental milestones are often delayed, partly due to prolonged hospitalization and limited mobility (medlineplus.gov). Long-term survivors may show mild neurodevelopmental impairment, likely secondary to chronic hypoxia in infancy rather than a direct effect of the mutation (medlineplus.gov). There is no curative treatment for AO3 – management is supportive and symptomatic. Orthopedic interventions (casting or surgical correction of clubfoot, stabilization of dislocated joints, spinal decompression) have been reported on a case-by-case basis (www.ncbi.nlm.nih.gov), but the severity of the skeletal malformations limits the effectiveness of such measures.
On the research front, Atelosteogenesis III continues to provide insights into skeletal development. The discovery of FLNB as the causative gene (first reported in 2004 (pubmed.ncbi.nlm.nih.gov)) revealed an unexpected role for the cytoskeleton in bone formation and joint morphogenesis. Ongoing studies are using animal models and cellular assays to unravel how mutant filamin B perturbs signaling pathways in chondrocytes (pmc.ncbi.nlm.nih.gov). This not only deepens the understanding of AO3 pathophysiology but also sheds light on fundamental processes like vertebral segmentation and endochondral ossification that are relevant to many skeletal conditions. While AO3 itself is exceedingly rare, these mechanistic insights may inform future therapies for more common orthopedic disorders and improve genetic counseling for skeletal dysplasias. Continued documentation of AO3 cases in medical literature (with only a few dozen known, each case report is valuable) will further refine knowledge of its clinical spectrum and management outcomes (medlineplus.gov) (pubmed.ncbi.nlm.nih.gov). Experts emphasize the importance of early diagnosis – often via prenatal imaging and molecular testing – to guide perinatal care and family planning in this devastating but illuminating genetic bone disorder (www.ncbi.nlm.nih.gov) (medlineplus.gov).
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