A

Disease A

Slug:Endometriosis
B

Disease B

Slug:Fibromyalgia
G

Causal Mechanism Graphs

Endometriosis

graph LR
    Droplet_based_microfluidic_protease_activity_profiling_platform_PrAMA;_MIT_Griffith_Han["Droplet-based microfluidic protease-activity profiling platform (PrAMA; MIT Griffith/Han)"]
    Central_Sensitization_and_Nociplastic_Pain["Central Sensitization and Nociplastic Pain"]
    Pelvic_Pain["Pelvic Pain"]
    Dysregulated_Peritoneal_Metalloproteinase_Activity["Dysregulated Peritoneal Metalloproteinase Activity"]
    Hypoxia_and_Angiogenesis["Hypoxia and Angiogenesis"]
    Lesion_Peritoneal_Neuroangiogenesis["Lesion-Peritoneal Neuroangiogenesis"]
    Chronic_Inflammation["Chronic Inflammation"]
    Peripheral_Nociceptor_Sensitization["Peripheral Nociceptor Sensitization"]

    Chronic_Inflammation --> Lesion_Peritoneal_Neuroangiogenesis
    Chronic_Inflammation --> Peripheral_Nociceptor_Sensitization
    Hypoxia_and_Angiogenesis --> Lesion_Peritoneal_Neuroangiogenesis
    Lesion_Peritoneal_Neuroangiogenesis --> Peripheral_Nociceptor_Sensitization
    Peripheral_Nociceptor_Sensitization --> Central_Sensitization_and_Nociplastic_Pain
    Peripheral_Nociceptor_Sensitization --> Pelvic_Pain
    Central_Sensitization_and_Nociplastic_Pain --> Pelvic_Pain
    Droplet_based_microfluidic_protease_activity_profiling_platform_PrAMA;_MIT_Griffith_Han --> Dysregulated_Peritoneal_Metalloproteinase_Activity

    style Droplet_based_microfluidic_protease_activity_profiling_platform_PrAMA;_MIT_Griffith_Han fill:#ccfbf1
    style Central_Sensitization_and_Nociplastic_Pain fill:#dbeafe
    style Pelvic_Pain fill:#fef3c7
    style Dysregulated_Peritoneal_Metalloproteinase_Activity fill:#dbeafe
    style Hypoxia_and_Angiogenesis fill:#dbeafe
    style Lesion_Peritoneal_Neuroangiogenesis fill:#dbeafe
    style Chronic_Inflammation fill:#dbeafe
    style Peripheral_Nociceptor_Sensitization fill:#dbeafe

Fibromyalgia

graph LR
    Small_Fiber_Pathology["Small Fiber Pathology"]
    Neuroinflammation["Neuroinflammation"]
    Central_Sensitization["Central Sensitization"]

    Neuroinflammation --> Central_Sensitization
    Small_Fiber_Pathology --> Central_Sensitization

    style Small_Fiber_Pathology fill:#dbeafe
    style Neuroinflammation fill:#dbeafe
    style Central_Sensitization fill:#dbeafe
S

Association Signals

Signal 1
ICEES EHR_COHORT_ASSOCIATION UNKNOWN
Population:ICEES KG 8-20-2024, UNC Health primary-ciliary-dyskinesia (PCD) cohort (condition-specific base population), patient-level chi-square contingency.
Mapping notes:ICEES reports this pair as a positive correlation. Chi-square is not multiple-testing corrected and is conditioned on the PCD base population, so it corroborates rather than establishes the association. The row quoted is the strongest PCD cohort-year (2020).
Temporal: A before B: , B before A: , Same time:
CHI_SQUARE: 9.046602651882589
CI: -
p: 0.0026318341895938866
FDR:
ICEES PCD 2020 cohort co-occurrence of endometriosis and fibromyalgia (N=4753); significant positive association.
Source: OTHER
"PCD_UNC_patient_2020_v6_binned_deidentified | 9.046602651882589 | 1 | 0.0026318341895938866 | 4753"
ICEES UNC EHR cohort shows a significant endometriosis-fibromyalgia co-occurrence in the 2020 PCD cohort.
Signal 2
LITERATURE LITERATURE_ASSOCIATION A_BEFORE_B
Population:Skåne (Sweden) regional registry cohort; incidence-rate ratio of fibromyalgia after an endometriosis diagnosis versus without.
Temporal: A before B: , B before A: , Same time:
IRR: 2.83
CI: 1.96 - 4.08
p:
FDR:
Incidence-rate ratio of later fibromyalgia among endometriosis patients.
PMID:31131959 (SUPPORT)
Source: HUMAN_CLINICAL
"For endometriosis patients the IRR for fibromyalgia was 2.83 (95% CI: 1.96-4.08) and for CWP 5.02 (95% CI: 3.10-8.13)."
Registry cohort IRR for fibromyalgia following endometriosis diagnosis.
H

Hypotheses

Hypothesis: chronic visceral nociceptive input from endometriosis provokes central sensitization, predisposing to later development of fibromyalgia and chronic widespread pain.
PMID:31131959 (SUPPORT)
Source: HUMAN_CLINICAL
"Widespread pain is a common comorbidity in several chronic diseases and is suspected to be caused by pain resulting from the underlying disease that has provoked a state of central sensitization."
States the central-sensitization mechanism by which an underlying painful disease can lead to widespread pain.
PMID:31131959 (SUPPORT)
Source: HUMAN_CLINICAL
"This study shows that RA, endometriosis and IBD are all risk factors for later fibromyalgia and CWP"
Establishes endometriosis as a risk factor for later-onset fibromyalgia, supporting the A_BEFORE_B directionality.
Pathophysiology:
Central sensitization from chronic endometriosis pain: Sustained visceral nociceptive signaling from endometriotic lesions may drive central sensitization, lowering pain thresholds and predisposing to fibromyalgia and chronic widespread pain.
Biological processes:
PMID:31131959 (SUPPORT)
Source: HUMAN_CLINICAL
"For endometriosis patients the IRR for fibromyalgia was 2.83 (95% CI: 1.96-4.08) and for CWP 5.02 (95% CI: 3.10-8.13)."
Quantifies the increased incidence of fibromyalgia following an endometriosis diagnosis.
Y

Raw YAML

Show YAML
name: com_Endometriosis__Fibromyalgia
creation_date: '2026-06-26T00:00:00Z'
curation_status: CANDIDATE
notes: >-
  Cross-system chronic-pain comorbidity: endometriosis is a risk factor for
  later-onset fibromyalgia. Surfaced as a positive both-in-dismech ICEES EHR
  signal (UNC PCD cohort, chi-square=9.0, p=2.6e-3) and corroborated by a
  registry cohort reporting a ~2.8-fold increased incidence of fibromyalgia
  after an endometriosis diagnosis. Directionality is A_BEFORE_B (endometriosis
  precedes fibromyalgia); the proposed mechanism is central sensitization driven
  by chronic visceral pain.

disease_a:
  slug: Endometriosis
  preferred_term: endometriosis
  term:
    id: MONDO:0005133
    label: endometriosis

disease_b:
  slug: Fibromyalgia
  preferred_term: fibromyalgia
  term:
    id: MONDO:0005546
    label: fibromyalgia

directionality: A_BEFORE_B

hypotheses:
- description: >-
    Hypothesis: chronic visceral nociceptive input from endometriosis provokes
    central sensitization, predisposing to later development of fibromyalgia and
    chronic widespread pain.
  evidence:
  - reference: PMID:31131959
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Widespread pain is a common comorbidity in several chronic diseases and is suspected to be caused by pain resulting from the underlying disease that has provoked a state of central sensitization."
    explanation: >-
      States the central-sensitization mechanism by which an underlying painful
      disease can lead to widespread pain.
  - reference: PMID:31131959
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "This study shows that RA, endometriosis and IBD are all risk factors for later fibromyalgia and CWP"
    explanation: >-
      Establishes endometriosis as a risk factor for later-onset fibromyalgia,
      supporting the A_BEFORE_B directionality.
  pathophysiology:
  - name: Central sensitization from chronic endometriosis pain
    description: >-
      Sustained visceral nociceptive signaling from endometriotic lesions may
      drive central sensitization, lowering pain thresholds and predisposing to
      fibromyalgia and chronic widespread pain.
    biological_processes:
    - preferred_term: sensory perception of pain
      term:
        id: GO:0019233
        label: sensory perception of pain
    evidence:
    - reference: PMID:31131959
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: "For endometriosis patients the IRR for fibromyalgia was 2.83 (95% CI: 1.96-4.08) and for CWP 5.02 (95% CI: 3.10-8.13)."
      explanation: >-
        Quantifies the increased incidence of fibromyalgia following an
        endometriosis diagnosis.

association_signals:
- source: ICEES
  method: EHR_COHORT_ASSOCIATION
  signal_disorder_a_id: MONDO:0005133
  signal_disorder_b_id: MONDO:0005546
  population: >-
    ICEES KG 8-20-2024, UNC Health primary-ciliary-dyskinesia (PCD) cohort
    (condition-specific base population), patient-level chi-square contingency.
  mapping_notes: >-
    ICEES reports this pair as a positive correlation. Chi-square is not
    multiple-testing corrected and is conditioned on the PCD base population,
    so it corroborates rather than establishes the association. The row quoted
    is the strongest PCD cohort-year (2020).
  directionality: UNKNOWN
  limited_precision: true
  statistics:
    metrics:
    - metric_type: CHI_SQUARE
      metric_value: 9.046602651882589
      p_value: 0.0026318341895938866
      notes: >-
        ICEES PCD 2020 cohort co-occurrence of endometriosis and fibromyalgia
        (N=4753); significant positive association.
  evidence:
  - reference: ICEES:MONDO_0005133__MONDO_0005546
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "PCD_UNC_patient_2020_v6_binned_deidentified | 9.046602651882589 | 1 | 0.0026318341895938866 | 4753"
    explanation: >-
      ICEES UNC EHR cohort shows a significant endometriosis-fibromyalgia
      co-occurrence in the 2020 PCD cohort.

- source: LITERATURE
  method: LITERATURE_ASSOCIATION
  population: >-
    Skåne (Sweden) regional registry cohort; incidence-rate ratio of fibromyalgia
    after an endometriosis diagnosis versus without.
  directionality: A_BEFORE_B
  statistics:
    metrics:
    - metric_type: IRR
      metric_value: 2.83
      metric_ci_lower: 1.96
      metric_ci_upper: 4.08
      notes: Incidence-rate ratio of later fibromyalgia among endometriosis patients.
    evidence:
    - reference: PMID:31131959
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: "For endometriosis patients the IRR for fibromyalgia was 2.83 (95% CI: 1.96-4.08) and for CWP 5.02 (95% CI: 3.10-8.13)."
      explanation: >-
        Registry cohort IRR for fibromyalgia following endometriosis diagnosis.
Source:GitHub