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Class: TermMapping

Mapping from this disease entry to an external term or code

URI: dismech:TermMapping

 classDiagram
    class TermMapping
    click TermMapping href "../TermMapping/"
      TermMapping <|-- ICD10CMMapping
        click ICD10CMMapping href "../ICD10CMMapping/"
      TermMapping <|-- ICD11FMapping
        click ICD11FMapping href "../ICD11FMapping/"
      TermMapping <|-- MondoMapping
        click MondoMapping href "../MondoMapping/"

      TermMapping : consistency





        TermMapping --> "*" MappingConsistency : consistency
        click MappingConsistency href "../MappingConsistency/"



      TermMapping : mapping_justification

      TermMapping : mapping_predicate

      TermMapping : mapping_source

      TermMapping : notes

      TermMapping : term





        TermMapping --> "1" Term : term
        click Term href "../Term/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
term 1 recommended
Term		 Optional structured ontology term reference direct
mapping_predicate 1
Uriorcurie		 Relationship between this disease and the mapped term (e direct
mapping_source 0..1
String		 Source of the mapping (e direct
mapping_justification 0..1
String		 Brief rationale or justification for the mapping direct
consistency *
MappingConsistency		 Consistency assertions for this mapping against other sources direct
notes 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:TermMapping
native dismech:TermMapping

LinkML Source

Direct

name: TermMapping
description: Mapping from this disease entry to an external term or code
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- term
- mapping_predicate
- mapping_source
- mapping_justification
- consistency
- notes
slot_usage:
  term:
    name: term
    required: true
  mapping_predicate:
    name: mapping_predicate
    required: true

Induced

name: TermMapping
description: Mapping from this disease entry to an external term or code
from_schema: https://w3id.org/monarch-initiative/dismech
slot_usage:
  term:
    name: term
    required: true
  mapping_predicate:
    name: mapping_predicate
    required: true
attributes:
  term:
    name: term
    description: Optional structured ontology term reference
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: term
    owner: TermMapping
    domain_of:
    - Descriptor
    - TermMapping
    - ConditionDescriptor
    - GOEnrichmentTerm
    range: Term
    required: true
    recommended: true
    inlined: true
  mapping_predicate:
    name: mapping_predicate
    description: Relationship between this disease and the mapped term (e.g., skos:exactMatch)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: mapping_predicate
    owner: TermMapping
    domain_of:
    - TermMapping
    range: uriorcurie
    required: true
  mapping_source:
    name: mapping_source
    description: Source of the mapping (e.g., MONDO, ICD-10-CM, manual curation)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: mapping_source
    owner: TermMapping
    domain_of:
    - TermMapping
    range: string
  mapping_justification:
    name: mapping_justification
    description: Brief rationale or justification for the mapping
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: mapping_justification
    owner: TermMapping
    domain_of:
    - TermMapping
    range: string
  consistency:
    name: consistency
    description: Consistency assertions for this mapping against other sources
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: consistency
    owner: TermMapping
    domain_of:
    - TermMapping
    range: MappingConsistency
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: TermMapping
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string