Class: Stage

URI: dismech:Stage

 classDiagram
    class Stage
    click Stage href "../Stage/"
      Stage : context

      Stage : description

      Stage : evidence





        Stage --> "*" EvidenceItem : evidence
        click EvidenceItem href "../EvidenceItem/"



      Stage : examples

      Stage : name

      Stage : notes

      Stage : pathophysiology





        Stage --> "*" Pathophysiology : pathophysiology
        click Pathophysiology href "../Pathophysiology/"



      Stage : review_notes

      Stage : role

      Stage : substages





        Stage --> "*" Stage : substages
        click Stage href "../Stage/"

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 String		direct
description	0..1 String		direct
evidence	* recommended EvidenceItem		direct
notes	0..1 String		direct
context	0..1 String		direct
review_notes	0..1 String		direct
role	0..1 String		direct
examples	* String		direct
pathophysiology	* Pathophysiology		direct
substages	* Stage		direct

Usages

used by	used in	type	used
Disease	stages	range	Stage
Stage	substages	range	Stage

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:Stage
native	dismech:Stage

LinkML Source

Direct

name: Stage
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- name
- description
- evidence
- notes
- context
- review_notes
- role
- examples
- pathophysiology
- substages

Induced

name: Stage
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  name:
    name: name
    examples:
    - value: Adolescent Nephronophthisis
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    identifier: true
    alias: name
    owner: Stage
    domain_of:
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycleStage
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ComorbidityAssociation
    range: string
    required: true
  description:
    name: description
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: description
    owner: Stage
    domain_of:
    - Descriptor
    - GeneticContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - HistopathologyFinding
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - FunctionalEffect
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ConditionDescriptor
    - GOEnrichment
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: string
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: Stage
    domain_of:
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - Finding
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: Stage
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string
  context:
    name: context
    examples:
    - value: Pregnancy
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: context
    owner: Stage
    domain_of:
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    range: string
  review_notes:
    name: review_notes
    examples:
    - value: Added an additional clinically relevant subtype.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: review_notes
    owner: Stage
    domain_of:
    - ClinicalTrial
    - Subtype
    - ProgressionInfo
    - Phenotype
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    range: string
  role:
    name: role
    examples:
    - value: Primary
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: role
    owner: Stage
    domain_of:
    - HostDescriptor
    - Pathophysiology
    - Stage
    - Treatment
    range: string
  examples:
    name: examples
    examples:
    - value: '[''Kaposi Sarcoma'']'
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: examples
    owner: Stage
    domain_of:
    - Pathophysiology
    - Genetic
    - Environmental
    - Stage
    - Treatment
    range: string
    multivalued: true
  pathophysiology:
    name: pathophysiology
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: pathophysiology
    owner: Stage
    domain_of:
    - Disease
    - Stage
    - ComorbidityHypothesis
    range: Pathophysiology
    multivalued: true
    inlined: true
    inlined_as_list: true
  substages:
    name: substages
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: substages
    owner: Stage
    domain_of:
    - Stage
    range: Stage
    multivalued: true
    inlined: true
    inlined_as_list: true