Class: ProgressionInfo

URI: dismech:ProgressionInfo

 classDiagram
    class ProgressionInfo
    click ProgressionInfo href "../ProgressionInfo/"
      ProgressionInfo : age_range

      ProgressionInfo : duration

      ProgressionInfo : duration_days

      ProgressionInfo : evidence





        ProgressionInfo --> "*" EvidenceItem : evidence
        click EvidenceItem href "../EvidenceItem/"



      ProgressionInfo : incubation_days

      ProgressionInfo : incubation_years

      ProgressionInfo : notes

      ProgressionInfo : phase





        ProgressionInfo --> "0..1" PhaseTerm : phase
        click PhaseTerm href "../PhaseTerm/"



      ProgressionInfo : review_notes

      ProgressionInfo : subtype

Slots

Name	Cardinality and Range	Description	Inheritance
phase	0..1 PhaseTerm		direct
subtype	0..1 String		direct
age_range	0..1 String	Age range or stratification, if applicable	direct
evidence	* recommended EvidenceItem		direct
incubation_days	0..1 String		direct
review_notes	0..1 String		direct
incubation_years	0..1 String		direct
notes	0..1 String		direct
duration_days	0..1 String		direct
duration	0..1 String		direct

Usages

used by	used in	type	used
Disease	progression	range	ProgressionInfo

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:ProgressionInfo
native	dismech:ProgressionInfo

LinkML Source

Direct

name: ProgressionInfo
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- phase
- subtype
- age_range
- evidence
- incubation_days
- review_notes
- incubation_years
- notes
- duration_days
- duration

Induced

name: ProgressionInfo
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  phase:
    name: phase
    examples:
    - value: Active TB
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: phase
    owner: ProgressionInfo
    domain_of:
    - ClinicalTrial
    - ProgressionInfo
    range: PhaseTerm
  subtype:
    name: subtype
    examples:
    - value: Eyelid Myoclonia with Absences
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: subtype
    owner: ProgressionInfo
    domain_of:
    - PhenotypeContext
    - Prevalence
    - ProgressionInfo
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    range: string
  age_range:
    name: age_range
    description: Age range or stratification, if applicable
    examples:
    - value: Childhood-Adolescence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: age_range
    owner: ProgressionInfo
    domain_of:
    - PhenotypeContext
    - ProgressionInfo
    - Demographics
    range: string
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: ProgressionInfo
    domain_of:
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - Finding
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  incubation_days:
    name: incubation_days
    examples:
    - value: 3-14
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: incubation_days
    owner: ProgressionInfo
    domain_of:
    - ProgressionInfo
    range: string
  review_notes:
    name: review_notes
    examples:
    - value: Added an additional clinically relevant subtype.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: review_notes
    owner: ProgressionInfo
    domain_of:
    - ClinicalTrial
    - Subtype
    - ProgressionInfo
    - Phenotype
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    range: string
  incubation_years:
    name: incubation_years
    examples:
    - value: 2-15
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: incubation_years
    owner: ProgressionInfo
    domain_of:
    - ProgressionInfo
    range: string
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: ProgressionInfo
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string
  duration_days:
    name: duration_days
    examples:
    - value: 2-5
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: duration_days
    owner: ProgressionInfo
    domain_of:
    - ProgressionInfo
    range: string
  duration:
    name: duration
    examples:
    - value: Variable
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: duration
    owner: ProgressionInfo
    domain_of:
    - ProgressionInfo
    range: string