Class: LysosomalStorageAssignment

Lysosomal storage disease biochemical classification assignment

URI: dismech:LysosomalStorageAssignment

 classDiagram
    class LysosomalStorageAssignment
    click LysosomalStorageAssignment href "../LysosomalStorageAssignment/"
      ClassificationAssignment <|-- LysosomalStorageAssignment
        click ClassificationAssignment href "../ClassificationAssignment/"

      LysosomalStorageAssignment : classification_value





        LysosomalStorageAssignment --> "1" LysosomalStorageEnum : classification_value
        click LysosomalStorageEnum href "../LysosomalStorageEnum/"



      LysosomalStorageAssignment : evidence





        LysosomalStorageAssignment --> "*" EvidenceItem : evidence
        click EvidenceItem href "../EvidenceItem/"



      LysosomalStorageAssignment : notes

Inheritance

• ClassificationAssignment
  • LysosomalStorageAssignment

Slots

Name	Cardinality and Range	Description	Inheritance
classification_value	1 LysosomalStorageEnum	The classification value assigned	direct
evidence	* recommended EvidenceItem		ClassificationAssignment
notes	0..1 String		ClassificationAssignment

Usages

used by	used in	type	used
DiseaseClassifications	lysosomal_storage_category	range	LysosomalStorageAssignment

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:LysosomalStorageAssignment
native	dismech:LysosomalStorageAssignment

LinkML Source

Direct

name: LysosomalStorageAssignment
description: Lysosomal storage disease biochemical classification assignment
from_schema: https://w3id.org/monarch-initiative/dismech
is_a: ClassificationAssignment
slots:
- classification_value
slot_usage:
  classification_value:
    name: classification_value
    range: LysosomalStorageEnum
    required: true

Induced

name: LysosomalStorageAssignment
description: Lysosomal storage disease biochemical classification assignment
from_schema: https://w3id.org/monarch-initiative/dismech
is_a: ClassificationAssignment
slot_usage:
  classification_value:
    name: classification_value
    range: LysosomalStorageEnum
    required: true
attributes:
  classification_value:
    name: classification_value
    description: The classification value assigned
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: classification_value
    owner: LysosomalStorageAssignment
    domain_of:
    - ICDOMorphologyAssignment
    - HarrisonsChapterAssignment
    - LysosomalStorageAssignment
    - MechanisticNosologyAssignment
    - IUISAssignment
    - ChannelopathyAssignment
    range: LysosomalStorageEnum
    required: true
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: LysosomalStorageAssignment
    domain_of:
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - Finding
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: LysosomalStorageAssignment
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string