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Class: InfectiousAgent

URI: dismech:InfectiousAgent

 classDiagram
    class InfectiousAgent
    click InfectiousAgent href "../InfectiousAgent/"
      InfectiousAgent : description

      InfectiousAgent : evidence





        InfectiousAgent --> "*" EvidenceItem : evidence
        click EvidenceItem href "../EvidenceItem/"



      InfectiousAgent : has_subtypes





        InfectiousAgent --> "*" Subtype : has_subtypes
        click Subtype href "../Subtype/"



      InfectiousAgent : infectious_agent_term





        InfectiousAgent --> "0..1" OrganismDescriptor : infectious_agent_term
        click OrganismDescriptor href "../OrganismDescriptor/"



      InfectiousAgent : name

Slots

Name Cardinality and Range Description Inheritance
name 1
String		 direct
infectious_agent_term 0..1
OrganismDescriptor		 The NCBITaxon term for this infectious agent direct
evidence * recommended
EvidenceItem		 direct
description 0..1
String		 direct
has_subtypes *
Subtype		 direct

Usages

used by used in type used
Disease infectious_agent range InfectiousAgent

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:InfectiousAgent
native dismech:InfectiousAgent

LinkML Source

Direct

name: InfectiousAgent
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- name
- infectious_agent_term
- evidence
- description
- has_subtypes

Induced

name: InfectiousAgent
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  name:
    name: name
    examples:
    - value: Adolescent Nephronophthisis
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    identifier: true
    alias: name
    owner: InfectiousAgent
    domain_of:
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycleStage
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ComorbidityAssociation
    range: string
    required: true
  infectious_agent_term:
    name: infectious_agent_term
    description: The NCBITaxon term for this infectious agent
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: infectious_agent_term
    owner: InfectiousAgent
    domain_of:
    - InfectiousAgent
    range: OrganismDescriptor
    inlined: true
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: InfectiousAgent
    domain_of:
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - Finding
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  description:
    name: description
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: description
    owner: InfectiousAgent
    domain_of:
    - Descriptor
    - GeneticContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - HistopathologyFinding
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - FunctionalEffect
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ConditionDescriptor
    - GOEnrichment
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: string
  has_subtypes:
    name: has_subtypes
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: has_subtypes
    owner: InfectiousAgent
    domain_of:
    - Disease
    - InfectiousAgent
    range: Subtype
    multivalued: true
    inlined: true
    inlined_as_list: true