Class: GOEnrichmentTerm

GO term enrichment result with statistical metrics.

 classDiagram
    class GOEnrichmentTerm
    click GOEnrichmentTerm href "../GOEnrichmentTerm/"
      GOEnrichmentTerm : combined_score

      GOEnrichmentTerm : fdr

      GOEnrichmentTerm : overlap

      GOEnrichmentTerm : p_value

      GOEnrichmentTerm : term





        GOEnrichmentTerm --> "0..1" Term : term
        click Term href "../Term/"

Slots

Name	Cardinality and Range	Description	Inheritance
term	0..1 recommended Term	Optional structured ontology term reference	direct
p_value	0..1 Float	P-value for an association or enrichment	direct
fdr	0..1 Float	FDR-adjusted p-value for an association or enrichment	direct
overlap	0..1 Float	Overlap fraction for an enrichment term	direct
combined_score	0..1 Float	Combined score used by an enrichment method	direct

Usages

used by	used in	type	used
GOEnrichment	go_terms	range	GOEnrichmentTerm

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:GOEnrichmentTerm
native	dismech:GOEnrichmentTerm

LinkML Source

Direct

name: GOEnrichmentTerm
description: GO term enrichment result with statistical metrics.
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- term
- p_value
- fdr
- overlap
- combined_score

Induced

name: GOEnrichmentTerm
description: GO term enrichment result with statistical metrics.
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  term:
    name: term
    description: Optional structured ontology term reference
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: term
    owner: GOEnrichmentTerm
    domain_of:
    - Descriptor
    - TermMapping
    - ConditionDescriptor
    - GOEnrichmentTerm
    range: Term
    recommended: true
    inlined: true
  p_value:
    name: p_value
    description: P-value for an association or enrichment
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: p_value
    owner: GOEnrichmentTerm
    domain_of:
    - AssociationMetric
    - GOEnrichmentTerm
    range: float
  fdr:
    name: fdr
    description: FDR-adjusted p-value for an association or enrichment
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: fdr
    owner: GOEnrichmentTerm
    domain_of:
    - AssociationMetric
    - GOEnrichmentTerm
    range: float
  overlap:
    name: overlap
    description: Overlap fraction for an enrichment term
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: overlap
    owner: GOEnrichmentTerm
    domain_of:
    - GOEnrichmentTerm
    range: float
  combined_score:
    name: combined_score
    description: Combined score used by an enrichment method
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: combined_score
    owner: GOEnrichmentTerm
    domain_of:
    - GOEnrichmentTerm
    range: float