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Class: EvidenceItem

URI: dismech:EvidenceItem

 classDiagram
    class EvidenceItem
    click EvidenceItem href "../EvidenceItem/"
      EvidenceItem : evidence_source





        EvidenceItem --> "0..1" EvidenceSourceEnum : evidence_source
        click EvidenceSourceEnum href "../EvidenceSourceEnum/"



      EvidenceItem : explanation

      EvidenceItem : reference

      EvidenceItem : snippet

      EvidenceItem : supports





        EvidenceItem --> "0..1" EvidenceItemSupportEnum : supports
        click EvidenceItemSupportEnum href "../EvidenceItemSupportEnum/"

Slots

Name Cardinality and Range Description Inheritance
reference 0..1
PMID		 The authoritative reference (publication) for this evidence item direct
supports 0..1
EvidenceItemSupportEnum		 direct
evidence_source 0..1
EvidenceSourceEnum		 Origin of the evidence item (human clinical, model organism, in vitro, or com... direct
snippet 0..1
String		 An exact excerpt/quote from the referenced publication that supports or refut... direct
explanation 0..1
String		 direct

Usages

used by used in type used
PhenotypeContext evidence range EvidenceItem
Dataset evidence range EvidenceItem
ClinicalTrial evidence range EvidenceItem
ComputationalModel evidence range EvidenceItem
DifferentialDiagnosis evidence range EvidenceItem
Subtype evidence range EvidenceItem
CausalEdge evidence range EvidenceItem
TreatmentMechanismTarget evidence range EvidenceItem
Finding evidence range EvidenceItem
Prevalence evidence range EvidenceItem
ProgressionInfo evidence range EvidenceItem
EpidemiologyInfo evidence range EvidenceItem
Pathophysiology evidence range EvidenceItem
Phenotype evidence range EvidenceItem
Biochemical evidence range EvidenceItem
HistopathologyFinding evidence range EvidenceItem
Genetic evidence range EvidenceItem
Environmental evidence range EvidenceItem
Stage evidence range EvidenceItem
AgentLifeCycle evidence range EvidenceItem
AgentLifeCycleStage evidence range EvidenceItem
AnimalModel evidence range EvidenceItem
Treatment evidence range EvidenceItem
InfectiousAgent evidence range EvidenceItem
Transmission evidence range EvidenceItem
Diagnosis evidence range EvidenceItem
Inheritance evidence range EvidenceItem
Variant evidence range EvidenceItem
ModelingConsideration evidence range EvidenceItem
ClassificationAssignment evidence range EvidenceItem
ICDOMorphologyAssignment evidence range EvidenceItem
HarrisonsChapterAssignment evidence range EvidenceItem
LysosomalStorageAssignment evidence range EvidenceItem
MechanisticNosologyAssignment evidence range EvidenceItem
IUISAssignment evidence range EvidenceItem
ChannelopathyAssignment evidence range EvidenceItem
Definition evidence range EvidenceItem
CriteriaSet evidence range EvidenceItem
ComorbidityAssociation literature_evidence range EvidenceItem
AssociationSignal evidence range EvidenceItem
AssociationStatistics evidence range EvidenceItem
ComorbidityHypothesis evidence range EvidenceItem
UpstreamConditionHypothesis evidence range EvidenceItem
MechanisticHypothesis evidence range EvidenceItem

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:EvidenceItem
native dismech:EvidenceItem

LinkML Source

Direct

name: EvidenceItem
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- reference
- supports
- evidence_source
- snippet
- explanation

Induced

name: EvidenceItem
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  reference:
    name: reference
    implements:
    - linkml:authoritative_reference
    description: The authoritative reference (publication) for this evidence item
    examples:
    - value: PMID:35533128
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: reference
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    - PublicationReference
    - MappingConsistency
    range: PMID
  supports:
    name: supports
    examples:
    - value: SUPPORT
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: supports
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    range: EvidenceItemSupportEnum
  evidence_source:
    name: evidence_source
    description: Origin of the evidence item (human clinical, model organism, in vitro,
      or computational)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence_source
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    range: EvidenceSourceEnum
    recommended: false
  snippet:
    name: snippet
    implements:
    - linkml:excerpt
    description: An exact excerpt/quote from the referenced publication that supports
      or refutes the claim
    comments:
    - This is automatically validated by the linkml-reference-validator tool.
    examples:
    - value: At the moment there is no healing therapy, so early kidney transplant
        is a fundamental tool to improve prognosis.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: snippet
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    range: string
  explanation:
    name: explanation
    examples:
    - value: There is no curative treatment for nephronophthisis, indicating that
        supportive care, including symptomatic treatment and monitoring, is currently
        applied to manage associated complications.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: explanation
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    range: string