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Class: Environmental

An environmental factor, exposure, or context relevant to disease

URI: dismech:Environmental

 classDiagram
    class Environmental
    click Environmental href "../Environmental/"
      Environmental : chemicals

      Environmental : description

      Environmental : effect

      Environmental : environment_context





        Environmental --> "0..1" EnvironmentDescriptor : environment_context
        click EnvironmentDescriptor href "../EnvironmentDescriptor/"



      Environmental : evidence





        Environmental --> "*" EvidenceItem : evidence
        click EvidenceItem href "../EvidenceItem/"



      Environmental : examples

      Environmental : exposure_term





        Environmental --> "0..1" ExposureDescriptor : exposure_term
        click ExposureDescriptor href "../ExposureDescriptor/"



      Environmental : name

      Environmental : notes

      Environmental : presence

      Environmental : review_notes

      Environmental : synonyms

Slots

Name Cardinality and Range Description Inheritance
name 1
String		 direct
presence 0..1
String		 direct
evidence * recommended
EvidenceItem		 direct
notes 0..1
String		 direct
description 0..1
String		 direct
chemicals *
String		 direct
synonyms *
String		 direct
effect 0..1
String		 direct
examples *
String		 direct
review_notes 0..1
String		 direct
exposure_term 0..1
ExposureDescriptor		 The ECTO/XCO term for this exposure event direct
environment_context 0..1
EnvironmentDescriptor		 The ENVO term for the environmental context/setting direct

Usages

used by used in type used
Disease environmental range Environmental

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:Environmental
native dismech:Environmental

LinkML Source

Direct

name: Environmental
description: An environmental factor, exposure, or context relevant to disease
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- name
- presence
- evidence
- notes
- description
- chemicals
- synonyms
- effect
- examples
- review_notes
- exposure_term
- environment_context

Induced

name: Environmental
description: An environmental factor, exposure, or context relevant to disease
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  name:
    name: name
    examples:
    - value: Adolescent Nephronophthisis
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    identifier: true
    alias: name
    owner: Environmental
    domain_of:
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycleStage
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ComorbidityAssociation
    range: string
    required: true
  presence:
    name: presence
    examples:
    - value: Positive
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: presence
    owner: Environmental
    domain_of:
    - Biochemical
    - Genetic
    - Environmental
    - Diagnosis
    range: string
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: Environmental
    domain_of:
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - Finding
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: Environmental
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string
  description:
    name: description
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: description
    owner: Environmental
    domain_of:
    - Descriptor
    - GeneticContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - HistopathologyFinding
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - FunctionalEffect
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ConditionDescriptor
    - GOEnrichment
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: string
  chemicals:
    name: chemicals
    examples:
    - value: '[''Phenol'']'
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: chemicals
    owner: Environmental
    domain_of:
    - Environmental
    range: string
    multivalued: true
  synonyms:
    name: synonyms
    examples:
    - value: '[''CYFRA 21-1'']'
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: synonyms
    owner: Environmental
    domain_of:
    - Pathophysiology
    - Biochemical
    - Environmental
    - Disease
    - Variant
    range: string
    multivalued: true
  effect:
    name: effect
    examples:
    - value: Potential trigger for flare-ups
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: effect
    owner: Environmental
    domain_of:
    - Environmental
    - Transmission
    range: string
  examples:
    name: examples
    examples:
    - value: '[''Kaposi Sarcoma'']'
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: examples
    owner: Environmental
    domain_of:
    - Pathophysiology
    - Genetic
    - Environmental
    - Stage
    - Treatment
    range: string
    multivalued: true
  review_notes:
    name: review_notes
    examples:
    - value: Added an additional clinically relevant subtype.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: review_notes
    owner: Environmental
    domain_of:
    - ClinicalTrial
    - Subtype
    - ProgressionInfo
    - Phenotype
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    range: string
  exposure_term:
    name: exposure_term
    description: The ECTO/XCO term for this exposure event
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: exposure_term
    owner: Environmental
    domain_of:
    - Environmental
    range: ExposureDescriptor
    inlined: true
  environment_context:
    name: environment_context
    description: The ENVO term for the environmental context/setting
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: environment_context
    owner: Environmental
    domain_of:
    - Environmental
    range: EnvironmentDescriptor
    inlined: true