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Class: Diagnosis

URI: dismech:Diagnosis

 classDiagram
    class Diagnosis
    click Diagnosis href "../Diagnosis/"
      Diagnosis : description

      Diagnosis : diagnosis_term





        Diagnosis --> "0..1" TreatmentDescriptor : diagnosis_term
        click TreatmentDescriptor href "../TreatmentDescriptor/"



      Diagnosis : evidence





        Diagnosis --> "*" EvidenceItem : evidence
        click EvidenceItem href "../EvidenceItem/"



      Diagnosis : markers

      Diagnosis : name

      Diagnosis : notes

      Diagnosis : presence

      Diagnosis : results

Slots

Name Cardinality and Range Description Inheritance
name 1
String		 direct
diagnosis_term 0..1
TreatmentDescriptor		 The MAXO term for this diagnostic procedure direct
presence 0..1
String		 direct
evidence * recommended
EvidenceItem		 direct
notes 0..1
String		 direct
results 0..1
String		 direct
markers 0..1
String		 direct
description 0..1
String		 direct

Usages

used by used in type used
Disease diagnosis range Diagnosis

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:Diagnosis
native dismech:Diagnosis

LinkML Source

Direct

name: Diagnosis
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- name
- diagnosis_term
- presence
- evidence
- notes
- results
- markers
- description

Induced

name: Diagnosis
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  name:
    name: name
    examples:
    - value: Adolescent Nephronophthisis
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    identifier: true
    alias: name
    owner: Diagnosis
    domain_of:
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycleStage
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ComorbidityAssociation
    range: string
    required: true
  diagnosis_term:
    name: diagnosis_term
    description: The MAXO term for this diagnostic procedure
    comments:
    - MAXO includes diagnostic procedures under medical actions
    - Use qualifiers with UBERON terms to specify anatomical location (e.g., right
      heart catheterization)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: diagnosis_term
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: TreatmentDescriptor
    inlined: true
  presence:
    name: presence
    examples:
    - value: Positive
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: presence
    owner: Diagnosis
    domain_of:
    - Biochemical
    - Genetic
    - Environmental
    - Diagnosis
    range: string
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: Diagnosis
    domain_of:
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - Finding
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: Diagnosis
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string
  results:
    name: results
    examples:
    - value: Identifies MEFV mutations
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: results
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  markers:
    name: markers
    examples:
    - value: CRP, ESR, SAA
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: markers
    owner: Diagnosis
    domain_of:
    - Diagnosis
    range: string
  description:
    name: description
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: description
    owner: Diagnosis
    domain_of:
    - Descriptor
    - GeneticContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - HistopathologyFinding
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - FunctionalEffect
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ConditionDescriptor
    - GOEnrichment
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: string