Class: Definition

A diagnostic or phenotype definition for the disease

 classDiagram
    class Definition
    click Definition href "../Definition/"
      Definition : criteria_sets





        Definition --> "*" CriteriaSet : criteria_sets
        click CriteriaSet href "../CriteriaSet/"



      Definition : definition_type





        Definition --> "1" DefinitionTypeEnum : definition_type
        click DefinitionTypeEnum href "../DefinitionTypeEnum/"



      Definition : description

      Definition : evidence





        Definition --> "*" EvidenceItem : evidence
        click EvidenceItem href "../EvidenceItem/"



      Definition : exclusion_criteria





        Definition --> "*" CriteriaItem : exclusion_criteria
        click CriteriaItem href "../CriteriaItem/"



      Definition : inclusion_criteria





        Definition --> "*" CriteriaItem : inclusion_criteria
        click CriteriaItem href "../CriteriaItem/"



      Definition : name

      Definition : notes

      Definition : scope

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 String		direct
definition_type	1 DefinitionTypeEnum	The type of definition or criteria set	direct
description	0..1 String		direct
scope	0..1 String	Scope or population for which the definition applies (e	direct
criteria_sets	* CriteriaSet	Named criteria groupings within a definition	direct
inclusion_criteria	* CriteriaItem	Inclusion criteria for a definition or criteria set	direct
exclusion_criteria	* CriteriaItem	Exclusion criteria for a definition or criteria set	direct
evidence	* recommended EvidenceItem		direct
notes	0..1 String		direct

Usages

used by	used in	type	used
Disease	definitions	range	Definition

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:Definition
native	dismech:Definition

LinkML Source

Direct

name: Definition
description: A diagnostic or phenotype definition for the disease
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- name
- definition_type
- description
- scope
- criteria_sets
- inclusion_criteria
- exclusion_criteria
- evidence
- notes
slot_usage:
  name:
    name: name
    required: true
  definition_type:
    name: definition_type
    required: true

Induced

name: Definition
description: A diagnostic or phenotype definition for the disease
from_schema: https://w3id.org/monarch-initiative/dismech
slot_usage:
  name:
    name: name
    required: true
  definition_type:
    name: definition_type
    required: true
attributes:
  name:
    name: name
    examples:
    - value: Adolescent Nephronophthisis
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    identifier: true
    alias: name
    owner: Definition
    domain_of:
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycleStage
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ComorbidityAssociation
    range: string
    required: true
  definition_type:
    name: definition_type
    description: The type of definition or criteria set
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: definition_type
    owner: Definition
    domain_of:
    - Definition
    range: DefinitionTypeEnum
    required: true
  description:
    name: description
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: description
    owner: Definition
    domain_of:
    - Descriptor
    - GeneticContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - HistopathologyFinding
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - FunctionalEffect
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ConditionDescriptor
    - GOEnrichment
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: string
  scope:
    name: scope
    description: Scope or population for which the definition applies (e.g., adults,
      pediatrics)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: scope
    owner: Definition
    domain_of:
    - Definition
    - CriteriaSet
    range: string
  criteria_sets:
    name: criteria_sets
    description: Named criteria groupings within a definition
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: criteria_sets
    owner: Definition
    domain_of:
    - Definition
    range: CriteriaSet
    multivalued: true
    inlined: true
    inlined_as_list: true
  inclusion_criteria:
    name: inclusion_criteria
    description: Inclusion criteria for a definition or criteria set
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: inclusion_criteria
    owner: Definition
    domain_of:
    - Definition
    - CriteriaSet
    range: CriteriaItem
    multivalued: true
    inlined: true
    inlined_as_list: true
  exclusion_criteria:
    name: exclusion_criteria
    description: Exclusion criteria for a definition or criteria set
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: exclusion_criteria
    owner: Definition
    domain_of:
    - Definition
    - CriteriaSet
    range: CriteriaItem
    multivalued: true
    inlined: true
    inlined_as_list: true
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: Definition
    domain_of:
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - Finding
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: Definition
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string