Class: ClassificationAssignment

Base class for classification assignments with evidence

• NOTE: this is an abstract class and should not be instantiated directly

URI: dismech:ClassificationAssignment

 classDiagram
    class ClassificationAssignment
    click ClassificationAssignment href "../ClassificationAssignment/"
      ClassificationAssignment <|-- ICDOMorphologyAssignment
        click ICDOMorphologyAssignment href "../ICDOMorphologyAssignment/"
      ClassificationAssignment <|-- HarrisonsChapterAssignment
        click HarrisonsChapterAssignment href "../HarrisonsChapterAssignment/"
      ClassificationAssignment <|-- LysosomalStorageAssignment
        click LysosomalStorageAssignment href "../LysosomalStorageAssignment/"
      ClassificationAssignment <|-- MechanisticNosologyAssignment
        click MechanisticNosologyAssignment href "../MechanisticNosologyAssignment/"
      ClassificationAssignment <|-- IUISAssignment
        click IUISAssignment href "../IUISAssignment/"
      ClassificationAssignment <|-- ChannelopathyAssignment
        click ChannelopathyAssignment href "../ChannelopathyAssignment/"

      ClassificationAssignment : evidence





        ClassificationAssignment --> "*" EvidenceItem : evidence
        click EvidenceItem href "../EvidenceItem/"



      ClassificationAssignment : notes

Inheritance

• ClassificationAssignment
  • ICDOMorphologyAssignment
  • HarrisonsChapterAssignment
  • LysosomalStorageAssignment
  • MechanisticNosologyAssignment
  • IUISAssignment
  • ChannelopathyAssignment

Slots

Name	Cardinality and Range	Description	Inheritance
evidence	* recommended EvidenceItem		direct
notes	0..1 String		direct

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:ClassificationAssignment
native	dismech:ClassificationAssignment

LinkML Source

Direct

name: ClassificationAssignment
description: Base class for classification assignments with evidence
from_schema: https://w3id.org/monarch-initiative/dismech
abstract: true
slots:
- evidence
- notes

Induced

name: ClassificationAssignment
description: Base class for classification assignments with evidence
from_schema: https://w3id.org/monarch-initiative/dismech
abstract: true
attributes:
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: ClassificationAssignment
    domain_of:
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - Finding
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: ClassificationAssignment
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string