Class: AssociationMetric

Quantitative association metric and its uncertainty.

 classDiagram
    class AssociationMetric
    click AssociationMetric href "../AssociationMetric/"
      AssociationMetric : fdr

      AssociationMetric : metric_ci_lower

      AssociationMetric : metric_ci_upper

      AssociationMetric : metric_type





        AssociationMetric --> "0..1" AssociationMetricTypeEnum : metric_type
        click AssociationMetricTypeEnum href "../AssociationMetricTypeEnum/"



      AssociationMetric : metric_value

      AssociationMetric : notes

      AssociationMetric : p_value

Slots

Name	Cardinality and Range	Description	Inheritance
metric_type	0..1 AssociationMetricTypeEnum	Metric type (e	direct
metric_value	0..1 Float	Metric value	direct
metric_ci_lower	0..1 Float	Lower confidence interval bound	direct
metric_ci_upper	0..1 Float	Upper confidence interval bound	direct
p_value	0..1 Float	P-value for an association or enrichment	direct
fdr	0..1 Float	FDR-adjusted p-value for an association or enrichment	direct
notes	0..1 String		direct

Usages

used by	used in	type	used
AssociationSignal	metrics	range	AssociationMetric
AssociationStatistics	metrics	range	AssociationMetric

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:AssociationMetric
native	dismech:AssociationMetric

LinkML Source

Direct

name: AssociationMetric
description: Quantitative association metric and its uncertainty.
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- metric_type
- metric_value
- metric_ci_lower
- metric_ci_upper
- p_value
- fdr
- notes

Induced

name: AssociationMetric
description: Quantitative association metric and its uncertainty.
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  metric_type:
    name: metric_type
    description: Metric type (e.g., OR, RR, HR)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: metric_type
    owner: AssociationMetric
    domain_of:
    - AssociationMetric
    range: AssociationMetricTypeEnum
  metric_value:
    name: metric_value
    description: Metric value
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: metric_value
    owner: AssociationMetric
    domain_of:
    - AssociationMetric
    range: float
  metric_ci_lower:
    name: metric_ci_lower
    description: Lower confidence interval bound
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: metric_ci_lower
    owner: AssociationMetric
    domain_of:
    - AssociationMetric
    range: float
  metric_ci_upper:
    name: metric_ci_upper
    description: Upper confidence interval bound
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: metric_ci_upper
    owner: AssociationMetric
    domain_of:
    - AssociationMetric
    range: float
  p_value:
    name: p_value
    description: P-value for an association or enrichment
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: p_value
    owner: AssociationMetric
    domain_of:
    - AssociationMetric
    - GOEnrichmentTerm
    range: float
  fdr:
    name: fdr
    description: FDR-adjusted p-value for an association or enrichment
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: fdr
    owner: AssociationMetric
    domain_of:
    - AssociationMetric
    - GOEnrichmentTerm
    range: float
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: AssociationMetric
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string