Class: AnimalModel

URI: dismech:AnimalModel

 classDiagram
    class AnimalModel
    click AnimalModel href "../AnimalModel/"
      AnimalModel : alleles

      AnimalModel : associated_phenotypes

      AnimalModel : background

      AnimalModel : category

      AnimalModel : description

      AnimalModel : evidence





        AnimalModel --> "*" EvidenceItem : evidence
        click EvidenceItem href "../EvidenceItem/"



      AnimalModel : genes





        AnimalModel --> "*" GeneDescriptor : genes
        click GeneDescriptor href "../GeneDescriptor/"



      AnimalModel : genotype

      AnimalModel : species

Slots

Name	Cardinality and Range	Description	Inheritance
species	0..1 String		direct
genotype	0..1 String		direct
background	0..1 String		direct
genes	* GeneDescriptor		direct
category	0..1 String		direct
alleles	* String		direct
description	0..1 String		direct
associated_phenotypes	* String		direct
evidence	* recommended EvidenceItem		direct

Usages

used by	used in	type	used
Disease	animal_models	range	AnimalModel

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:AnimalModel
native	dismech:AnimalModel

LinkML Source

Direct

name: AnimalModel
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- species
- genotype
- background
- genes
- category
- alleles
- description
- associated_phenotypes
- evidence

Induced

name: AnimalModel
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  species:
    name: species
    examples:
    - value: Human
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: species
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: string
  genotype:
    name: genotype
    examples:
    - value: HLA-DQ2
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: genotype
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: string
  background:
    name: background
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: background
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: string
  genes:
    name: genes
    examples:
    - value: '[{preferred_term: HLA-DQ2}, {preferred_term: INS}]'
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: genes
    owner: AnimalModel
    domain_of:
    - GeneticContext
    - Dataset
    - Subtype
    - Pathophysiology
    - AnimalModel
    range: GeneDescriptor
    multivalued: true
    inlined: true
    inlined_as_list: true
  category:
    name: category
    examples:
    - value: Hematologic
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: category
    owner: AnimalModel
    domain_of:
    - Phenotype
    - Disease
    - AnimalModel
    range: string
  alleles:
    name: alleles
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: alleles
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: string
    multivalued: true
  description:
    name: description
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: description
    owner: AnimalModel
    domain_of:
    - Descriptor
    - GeneticContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - HistopathologyFinding
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - FunctionalEffect
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ConditionDescriptor
    - GOEnrichment
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: string
  associated_phenotypes:
    name: associated_phenotypes
    examples:
    - value: '[''Celiac Disease'', ''Type 1 Diabetes'', ''Autoimmune Thyroid Disease'']'
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: associated_phenotypes
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: string
    multivalued: true
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: AnimalModel
    domain_of:
    - PhenotypeContext
    - Dataset
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - Finding
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true