Class: AnatomicalEntityDescriptor
A descriptor for anatomical locations, bindable to UBERON
URI: dismech:AnatomicalEntityDescriptor
classDiagram
class AnatomicalEntityDescriptor
click AnatomicalEntityDescriptor href "../AnatomicalEntityDescriptor/"
Descriptor <|-- AnatomicalEntityDescriptor
click Descriptor href "../Descriptor/"
AnatomicalEntityDescriptor : description
AnatomicalEntityDescriptor : laterality
AnatomicalEntityDescriptor --> "0..1" LateralityEnum : laterality
click LateralityEnum href "../LateralityEnum/"
AnatomicalEntityDescriptor : located_in
AnatomicalEntityDescriptor --> "0..1" AnatomicalEntityDescriptor : located_in
click AnatomicalEntityDescriptor href "../AnatomicalEntityDescriptor/"
AnatomicalEntityDescriptor : modifier
AnatomicalEntityDescriptor --> "0..1" ModifierEnum : modifier
click ModifierEnum href "../ModifierEnum/"
AnatomicalEntityDescriptor : preferred_term
AnatomicalEntityDescriptor : qualifiers
AnatomicalEntityDescriptor --> "*" Qualifier : qualifiers
click Qualifier href "../Qualifier/"
AnatomicalEntityDescriptor : term
AnatomicalEntityDescriptor --> "0..1" Term : term
click Term href "../Term/"
Inheritance
- Descriptor
- AnatomicalEntityDescriptor
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| preferred_term | 1 String |
The preferred human-readable term for this descriptor | Descriptor |
| description | 0..1 String |
A description of the descriptor | Descriptor |
| term | 0..1 recommended Term |
Optional UBERON anatomical entity term reference | Descriptor |
| modifier | 0..1 ModifierEnum |
Directional or qualitative modifier for a descriptor (e | Descriptor |
| located_in | 0..1 AnatomicalEntityDescriptor |
Anatomical location where this entity/process occurs or procedure is performe... | Descriptor |
| laterality | 0..1 LateralityEnum |
Laterality qualifier (left, right, or bilateral) | Descriptor |
| qualifiers | * Qualifier |
List of predicate-value pairs for formal post-composition | Descriptor |
Usages
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/monarch-initiative/dismech
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | dismech:AnatomicalEntityDescriptor |
| native | dismech:AnatomicalEntityDescriptor |
LinkML Source
Direct
name: AnatomicalEntityDescriptor
description: A descriptor for anatomical locations, bindable to UBERON
from_schema: https://w3id.org/monarch-initiative/dismech
is_a: Descriptor
slot_usage:
term:
name: term
description: Optional UBERON anatomical entity term reference
Induced
name: AnatomicalEntityDescriptor
description: A descriptor for anatomical locations, bindable to UBERON
from_schema: https://w3id.org/monarch-initiative/dismech
is_a: Descriptor
slot_usage:
term:
name: term
description: Optional UBERON anatomical entity term reference
attributes:
preferred_term:
name: preferred_term
description: The preferred human-readable term for this descriptor. This may be
more specific or nuanced than the linked ontology term label when the ontology
does not fully capture the desired granularity. Note that postcomposition using
the modifier slot may be appropriate for capturing the semantics of the preferred
term.
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: preferred_term
owner: AnatomicalEntityDescriptor
domain_of:
- Descriptor
- ConditionDescriptor
range: string
required: true
description:
name: description
description: A description of the descriptor. This may typically be redundant
with the `term` object, but the description is more human-readable and may be
used to communicate nuances not captured by the rigid standardization of the
term object.
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: description
owner: AnatomicalEntityDescriptor
domain_of:
- Descriptor
- GeneticContext
- Dataset
- ClinicalTrial
- ComputationalModel
- DifferentialDiagnosis
- Subtype
- CausalEdge
- TreatmentMechanismTarget
- EpidemiologyInfo
- Pathophysiology
- Phenotype
- HistopathologyFinding
- Environmental
- Disease
- Stage
- AgentLifeCycle
- AgentLifeCycleStage
- AnimalModel
- Treatment
- InfectiousAgent
- Transmission
- Assay
- Diagnosis
- Inheritance
- Variant
- FunctionalEffect
- Mechanism
- ModelingConsideration
- Definition
- CriteriaSet
- ConditionDescriptor
- GOEnrichment
- ComorbidityHypothesis
- UpstreamConditionHypothesis
- MechanisticHypothesis
range: string
recommended: false
term:
name: term
description: Optional UBERON anatomical entity term reference
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: term
owner: AnatomicalEntityDescriptor
domain_of:
- Descriptor
- TermMapping
- ConditionDescriptor
- GOEnrichmentTerm
range: Term
recommended: true
inlined: true
modifier:
name: modifier
description: Directional or qualitative modifier for a descriptor (e.g., increased,
decreased, abnormal)
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: modifier
owner: AnatomicalEntityDescriptor
domain_of:
- Descriptor
range: ModifierEnum
located_in:
name: located_in
description: Anatomical location where this entity/process occurs or procedure
is performed
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: located_in
owner: AnatomicalEntityDescriptor
domain_of:
- Descriptor
range: AnatomicalEntityDescriptor
inlined: true
laterality:
name: laterality
description: Laterality qualifier (left, right, or bilateral)
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: laterality
owner: AnatomicalEntityDescriptor
domain_of:
- Descriptor
range: LateralityEnum
qualifiers:
name: qualifiers
description: List of predicate-value pairs for formal post-composition. Allows
OWL-like expressivity with controlled predicates (e.g., RO relations) and values.
deprecated: Prefer explicit slots like located_in and laterality instead of generic
qualifiers
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: qualifiers
owner: AnatomicalEntityDescriptor
domain_of:
- Descriptor
range: Qualifier
multivalued: true
inlined: true
inlined_as_list: true