Anthrax — Comprehensive Disease Characteristics Report

Disease: Anthrax MONDO ID: MONDO:0005119 Category: Infectious Disease (bacterial zoonosis) Causative agent: Bacillus anthracis (NCBI:txid1392)

Evidence-source note: Anthrax is an infectious/environmental disease, not a heritable human genetic disorder. Accordingly, sections framed around germline "causal genes," "pathogenic variants," "inheritance patterns," and "penetrance" of the human host are largely Not applicable; where genetics matters, it is (a) the pathogen's virulence genes/plasmids and (b) host receptor/immune genes influencing susceptibility. This is flagged throughout. Information is drawn from aggregated disease-level resources (CDC, WHO, OMIM/pathogen genomics, PubMed) rather than individual EHR patient records.


1. Disease Information

Overview. Anthrax is an acute bacterial zoonotic disease caused by the Gram-positive, spore-forming rod Bacillus anthracis. It principally affects herbivorous mammals (cattle, sheep, goats, wild ungulates); humans are incidental hosts infected by contact with infected animals, contaminated animal products (hides, wool, bone, meat), contaminated soil, or—rarely—deliberately released spores (bioterrorism). Disease manifests in four forms defined by the portal of entry: cutaneous, gastrointestinal, inhalational (pulmonary), and injectional. All forms can progress to systemic infection with bacteremia, toxemia, sepsis, and hemorrhagic meningitis (P38638828).

Key identifiers. - MONDO: 0005119 - ICD-11: 1B97 (Anthrax); ICD-10: A22 (A22.0 cutaneous, A22.1 pulmonary, A22.2 gastrointestinal, A22.7 anthrax sepsis, A22.8, A22.9) - MeSH: D000881 (Anthrax); Descriptor for organism Bacillus anthracis D001409 - SNOMED CT: 409498004 (Anthrax) - DOID: DOID:7427 - Pathogen taxonomy: Bacillus anthracis NCBI:txid1392 - OMIM/Orphanet: No human Mendelian OMIM entry (infectious disease). Orphanet does not list anthrax as a rare genetic disease; related host receptor gene disorder: Hyaline Fibromatosis Syndrome (ANTXR2/CMG2, OMIM 228600) — see §4.

Synonyms / alternative names. Malignant pustule / malignant carbuncle (cutaneous form); woolsorters' disease / ragpickers' disease (inhalational, occupational); splenic fever; charbon; milzbrand; Siberian ulcer; injectional anthrax (heroin-associated).

Data derivation. Disease-level aggregated resources and published case series/surveillance, not individual-patient EHR.


2. Etiology

Primary cause (infectious). Infection by Bacillus anthracis. Environmentally persistent endospores are the infectious particle; they germinate to toxin-producing vegetative bacilli once inside a host. Full virulence requires two plasmids: - pXO1 (~182 kb) — encodes the three toxin components pagA (protective antigen, PA), lef (lethal factor, LF), cya (edema factor, EF) and the master regulator atxA. - pXO2 (~95 kb) — encodes the poly-γ-D-glutamic acid (PGA) capsule biosynthesis operon capBCADE.

Loss of either plasmid attenuates virulence; pXO1/atxA is required for intracellular macrophage escape and survival, pXO2 capsule for anti-phagocytic immune evasion (P11207600; P16334217).

Risk factors (environmental / occupational — dominant). - Occupational contact with livestock and animal products: farmers, herders, veterinarians, butchers/abattoir workers, wool/hide/leather handlers, ("woolsorters"), bone-meal/tannery workers (P26720232 — cases concentrated in animal-husbandry workers and housewives with animal contact). - Consumption of undercooked meat from infected animals (gastrointestinal/oropharyngeal form) (P29912259). - Injection drug use with contaminated heroin (injectional anthrax — European outbreaks 2009–2010). - Residence/work in endemic agricultural regions with poor veterinary-public-health infrastructure; contact with historical animal burial sites; warm-season and post-flood/drought soil disturbance. - Laboratory exposure; intentional aerosol release (bioterrorism — e.g., 2001 U.S. "Amerithrax" letters; 1979 Sverdlovsk accidental release). - Age/sex: cases skew to working-age adults with occupational exposure; male predominance in many series (e.g., 63% male, mean age ~44 y; P26720232).

Host genetic susceptibility factors. Not a classical genetic disease, but host genetics modulate toxin susceptibility: polymorphisms/expression of the toxin receptors ANTXR1 (TEM8) and ANTXR2 (CMG2) and downstream immune-signaling genes affect cellular sensitivity. Post-translational regulation (S-acylation cycles) of CMG2 controls receptor maturation and toxin susceptibility in vivo (P42409807). Inbred mouse strains differ in Nlrp1b inflammasome alleles that determine macrophage sensitivity to lethal toxin (model-organism evidence).

Protective factors. - Environmental/behavioral: livestock vaccination, safe carcass disposal (no butchering of animals dying suddenly), thorough cooking of meat, PPE in at-risk occupations, decontamination of animal products. - Immunological/medical: prior vaccination (anti-PA antibody), post-exposure prophylaxis (antibiotics ± vaccine). - Host genetic: Nlrp1b-mediated inflammasome activation that triggers rapid pyroptosis of infected macrophages can be protective against lethal-toxin lethality in mice (context-dependent; model-organism evidence).

Gene–environment interaction. Spore exposure (environment) intersects with host receptor availability and inflammasome genotype (genetics): only germinated bacilli producing toxin cause disease, and the host's ANTXR2/CMG2 receptor density and Nlrp1b allele determine cellular outcome (toxicity vs pyroptotic clearance). Occupational exposure interacts with vaccination status to determine net risk.


3. Phenotypes

Cutaneous anthrax (~95% of natural human cases). Type: clinical signs / physical manifestation. - Painless, pruritic papule → vesicle → black necrotic eschar ("malignant pustule") surrounded by non-pitting gelatinous edema; regional lymphadenopathy; low-grade fever/malaise. Incubation ~1–7 days (mean ~4.8 d; P26720232). Lesions most common on exposed hands/fingers/arms/face. Severity mild–moderate if treated; case-fatality ~20% untreated, <1% treated. HPO: HP:0000988 (skin rash), HP:0200041 (skin ulcer), HP:0011124 (localized skin lesion), HP:0000969 (edema), HP:0002090 (fever), HP:0002716 (lymphadenopathy).

Inhalational anthrax (most lethal). Type: clinical signs + laboratory/imaging abnormalities. - Biphasic: nonspecific flu-like prodrome (fever, malaise, dry cough, myalgia) → fulminant phase with dyspnea, hypoxemia, hemorrhagic mediastinitis with widened mediastinum, pleural effusions, shock, meningitis. Progression subacute→fulminant over days; severity severe; historic mortality ~85–90%, ~45% with modern intensive care/antitoxin. HPO: HP:0002094 (dyspnea), HP:0002878 (respiratory failure), HP:0002090, HP:0100749 (chest pain), HP:0032263 (mediastinal mass/widening — pleural effusion HP:0002202).

Gastrointestinal / oropharyngeal anthrax. Type: clinical signs. - Fever, severe abdominal pain, nausea/vomiting, hematemesis, bloody diarrhea, ascites, mesenteric adenopathy; oropharyngeal variant: throat pain, dysphagia, neck edema, oral ulcers. Severe; mortality ~25–60%. HPO: HP:0002240 (hepatomegaly/ascites HP:0001541), HP:0002573 (hematochezia), HP:0002013 (vomiting), HP:0002027 (abdominal pain), HP:0025267 (nausea).

Injectional anthrax. Type: clinical signs. Deep soft-tissue/necrotizing infection at injection site, marked edema without classic eschar, high rate of sepsis; associated with contaminated heroin. HPO: HP:0100806 (sepsis), HP:0000969.

Systemic complications (any form). Anthrax sepsis/toxemia, hemorrhagic meningitis/meningoencephalitis (poor prognosis), shock, coagulopathy. HPO: HP:0100806 (sepsis), HP:0001287 (meningitis), HP:0002315 (headache), HP:0001259 (coma), HP:0011098 (seizure).

Quality-of-life impact. Acute, high-acuity illness; survivors of cutaneous form may have scarring/contractures from eschars on hands. Severe systemic disease causes ICU-level morbidity, respiratory failure, neurological sequelae in meningitis survivors. No chronic relapsing phenotype (disease is acute/self-limited if survived).


4. Genetic / Molecular Information

Human causal genes: Not applicable — anthrax is not inherited. There are no human germline "causal genes," pathogenic ACMG/AMP variants, allele frequencies, or somatic/germline classifications for the disease itself.

Pathogen virulence genes (the relevant "genetics"): | Gene | Plasmid | Product | Function | |------|---------|---------|----------| | pagA | pXO1 | Protective antigen (PA83) | Receptor binding + translocon; delivers LF/EF | | lef | pXO1 | Lethal factor (LF) | Zn²⁺-metalloprotease; cleaves MAPKKs (MEK1/2/3/4/6/7), NLRP1 | | cya | pXO1 | Edema factor (EF) | Calmodulin-dependent adenylate cyclase; ↑cAMP | | atxA | pXO1 | AtxA | Master trans-activator of toxin + capsule genes | | capBCADE | pXO2 | PGA capsule machinery | Poly-γ-D-glutamate anti-phagocytic capsule | | acpA/acpB | pXO2 | Capsule regulators | Capsule expression control |

Host genes relevant to susceptibility (host receptor / modifier genes): - ANTXR2 / CMG2 (HGNC:21036; OMIM 608041) — primary anthrax toxin entry receptor; also a Collagen VI receptor for ECM homeostasis. Its loss-of-function mutations cause Hyaline Fibromatosis Syndrome (OMIM 228600) — a distinct human genetic disorder, notable because it reveals CMG2's dual physiological role and its regulation by S-acylation cycles that also control toxin susceptibility (P42409807). - ANTXR1 / TEM8 (HGNC:21014; OMIM 606410) — secondary/alternative toxin receptor; LOF causes GAPO syndrome and infantile hemangioma susceptibility (host disorders, not anthrax). - NLRP1 (inflammasome; direct LF substrate in rodents) — determines macrophage pyroptosis vs toxicity; a susceptibility modifier (strong in mouse, human NLRP1 also LF-responsive).

Epigenetic / chromosomal features. Not applicable to human host disease. Pathogen genome: single circular chromosome (~5.2 Mb) plus pXO1/pXO2; near-clonal population structure; typed by canonical SNPs and MLVA/VNTR (e.g., TaqMan/canSNP assays, P33371332).


5. Environmental Information


6. Mechanism / Pathophysiology

Ordered causal chain (initiating lesion → clinical manifestation)

  1. Spore entry through skin abrasion, ingestion, inhalation, or injection leads to deposition of dormant endospores in tissue.
  2. Spores are phagocytosed by local macrophages/dendritic cells and transported toward regional lymph nodes; germination-triggering signals (amino acids, nucleosides) result in germination to vegetative bacilli.
  3. Intracellular germinating bacilli, via pXO1/atxA-dependent functions, escape the phagosome and survive/replicate, then lyse and exit the macrophage (P11207600; P16334217).
  4. Extracellular vegetative bacilli express the pXO2 poly-γ-D-glutamate capsule, which inhibits phagocytosis and complement → immune evasion → unchecked bacteremia (can reach 10⁷–10⁸ CFU/mL).
  5. atxA activates toxin gene expression; PA83 binds host receptors ANTXR2/CMG2 (primary) and ANTXR1/TEM8 (P42409807).
  6. Cell-surface furin cleaves PA83 → PA63 (releasing PA20); PA63 oligomerizes into a heptamer/octamer prepore that binds up to 3–4 molecules of LF and/or EF (P42600039).
  7. Receptor-mediated endocytosis and endosomal acidification convert the prepore to a membrane-spanning pore (φ-clamp–gated translocase); LF and EF translocate into the cytosol.
  8. Branch A — Lethal toxin (PA+LF): LF (Zn-metalloprotease) cleaves MAPKKs (MEK1/2/3/4/6/7) and activates/cleaves NLRP1 → disrupts ERK/p38/JNK signaling → impairs dendritic cell & macrophage function, endothelial dysfunction, and (in sensitive cells) pyroptosis/apoptosis → immune paralysis, vascular barrier failure, hypotensive shock.
  9. Branch B — Edema toxin (PA+EF): EF (Ca²⁺/calmodulin-dependent adenylate cyclase) massively raises intracellular cAMP → fluid/electrolyte efflux and tissue edema, impaired neutrophil function, further immune suppression.
  10. Combined toxemia + bacteremia result in systemic inflammatory collapse: capillary leak, hemorrhage, hypoxia, DIC-like coagulopathy, multi-organ failure, and frequently hemorrhagic meningitis (bacterial/toxin CNS invasion) → death.

Upstream drivers = spore germination, plasmid-encoded capsule and toxins; downstream effectors = MAPKK cleavage, cAMP surge, endothelial/immune failure and shock. (Steps 8–9 branch and converge on step 10.)

Molecular pathways: MAPK/ERK, p38, JNK cascades (disrupted by LF); cAMP–PKA signaling (hyperactivated by EF); NLRP1 inflammasome; furin-mediated proprotein processing; receptor-mediated endocytosis. KEGG: ko05150-type bacterial pathways; Reactome anthrax-toxin entry. Cellular processes: phagocytosis, phagosomal escape, pyroptosis/apoptosis, inflammasome activation, endothelial barrier dysfunction, immune suppression. GO: GO:0006909 (phagocytosis), GO:0070269 (pyroptosis), GO:0006954 (inflammatory response), GO:0000165 (MAPK cascade), GO:0071356 (cellular response to cytokine). Protein dysfunction: host MAPKK proteolysis (loss of function of MEK signaling); pathological gain of adenylate-cyclase activity in cytosol; PA conformational activation/oligomerization is essential and drug-targetable (P42600039). Immune involvement: capsule-mediated anti-phagocytosis; toxin-mediated suppression of innate and adaptive immunity; cytokine dysregulation; late overwhelming sepsis. Tissue-damage mechanisms: hemorrhage, edema, necrosis, thrombosis, oxidative/ischemic injury from vascular collapse. GO/CL suggestions: biological processes GO:0006954, GO:0000165, GO:0070269; cell types CL:0000235 (macrophage), CL:0000451 (dendritic cell), CL:0000115 (endothelial cell), CL:0000775 (neutrophil).


7. Anatomical Structures Affected


8. Temporal Development


9. Inheritance and Population (Epidemiology)


10. Diagnostics


11. Outcome / Prognosis


12. Treatment

Antimicrobials (mainstay). - Fluoroquinolones: ciprofloxacin, levofloxacin (NCIT drug classes); first-line for treatment/PEP. - Tetracyclines: doxycycline (first-line PEP/treatment). - Beta-lactams: penicillin G / amoxicillin for penicillin-susceptible strains (naturally acquired often susceptible — P38638828 cured with IV penicillin; P26720232 penicillin group used in 78%); note intrinsic β-lactamase risk, so not for empiric bioterrorism use. - Others active: clindamycin, linezolid (add for toxin/protein-synthesis suppression and CNS penetration), meropenem, rifampin, vancomycin. - Systemic/meningitis regimens: CDC recommends ≥2–3 drug combination IV therapy including a bactericidal agent (fluoroquinolone) + a protein-synthesis inhibitor (linezolid/clindamycin) + CNS-penetrant agent when meningitis is possible. - Duration: systemic disease treated intravenously then oral; inhalational/post-exposure prophylaxis requires 60 days of oral antibiotics because of spore dormancy.

Antitoxins (adjuncts for systemic disease — target PA). - Raxibacumab — human anti-PA monoclonal antibody (FDA-approved 2012). - Obiltoxaximab (ETI-204) — anti-PA monoclonal (FDA-approved 2016). - Anthrax immune globulin (AIG, Anthrasil) — polyclonal anti-PA from vaccinated donors. These neutralize circulating toxin; used with antibiotics for systemic/severe anthrax. Next-generation ultrapotent anti-PA antibodies blocking PA63 oligomerization are in development (e.g., 22F1, IC50 = 0.027 nM; P42600039).

Supportive / interventional care: aggressive fluid/vasopressor support for shock, pleural fluid drainage (improves outcome by removing toxin-rich effusion), mechanical ventilation, surgical debridement (injectional/severe cutaneous — avoid excising uncomplicated eschars), corticosteroids for extensive head/neck edema or meningitis.

Pharmacogenomics: not a major factor; standard drug-metabolism considerations (e.g., CYP interactions with ciprofloxacin) apply. NCIT suggestions: Ciprofloxacin (C2778), Doxycycline (C459), Penicillin (C739), Raxibacumab (C82675), Obiltoxaximab, Linezolid, Clindamycin, Anthrax Immune Globulin.


13. Prevention


14. Other Species / Natural Disease


15. Model Organisms


Evidence-Source Legend

Limitations

Future Directions