Noonan syndrome is an autosomal dominant RASopathy caused by germline mutations in genes of the RAS-MAPK signaling pathway, most commonly PTPN11. It is characterized by distinctive facial features, short stature, congenital heart defects (particularly pulmonary valve stenosis and hypertrophic cardiomyopathy), and variable developmental delays. It is one of the most common genetic syndromes associated with congenital heart disease, with an estimated incidence of 1:1,000 to 1:2,500 live births.
Conditions with similar clinical presentations that must be differentiated from Noonan Syndrome:
Pathophysiology description (knowledge‑base narrative) Noonan syndrome (MONDO:0018997) arises from germline variants that converge on hyperactivation of the RAS–MAPK pathway, commonly via SHP2 gain of function (PTPN11), augmented RAS‑GEF activity (SOS1), kinase activation (RAF1/BRAF), altered small GTPase signaling (RIT1), or loss of RAS proteostasis (LZTR1). Developmental perturbations of endocardial EMT produce pulmonary valve stenosis, sustained ERK signaling in cardiomyocytes drives hypertrophic cardiomyopathy, ERK‑regulated lymphangiogenic programs cause central conducting lymphatic anomalies and chylous effusions, and ERK‑dependent effects on growth plate chondrocytes impair endochondral ossification and growth. Precision inhibition of MEK–ERK, supported by animal models and human case series, can reverse cardiomyocyte hypertrophy and improve lymphatic dysfunction in selected NS genotypes, motivating controlled trials and genotype‑guided selection (saintlaurent2024noveltherapeuticperspectives pages 1-2, yi2023anassessmentof pages 3-4, cuevasnavarro2023rasdependentrafmapkhyperactivation pages 1-2, abe2024dysregulationofras pages 1-2, brouchoven2025trametinibasa pages 2-3, pascarella2024refractorychylothoraxand pages 1-2, pascarella2024refractorychylothoraxand pages 6-7).
Gene/protein annotations with ontology terms and notes | Gene (HGNC) | Protein | Molecular role in RAS/MAPK | Pathogenic mechanism in NS | Dominant clinical associations (heart, lymphatic, skeletal/neuro) | Notable mechanistic findings | Representative recent sources (year and URL) | |---|---|---|---|---|---|---| | PTPN11 | SHP2 | Non-receptor PTP that promotes RAS→RAF→MEK→ERK downstream of RTKs | Germline missense (gain‑of‑function) mutations destabilize N‑SH2/PTP autoinhibition → increased catalytic activity and ERK signaling | Pulmonary valve stenosis (PVS), short stature, variable HCM (very high HCM in NSML) | Mutations cluster at N‑SH2/PTP interface; SHP2 GOF impairs GH signaling and increases ERK phosphorylation (links to valve and growth phenotypes) | Saint‑Laurent et al. 2024 https://doi.org/10.1007/s00431-023-05263-y, Yi et al. 2023 https://doi.org/10.1007/s10557-022-07324-0 (saintlaurent2024noveltherapeuticperspectives pages 1-2, yi2023anassessmentof pages 3-4) | | SOS1 | SOS1 (Son of Sevenless 1) | RAS guanine‑nucleotide exchange factor (GEF) that promotes RAS‑GTP loading | Activating variants increase GEF activity → elevated RAS‑GTP and downstream MAPK signaling | PVS/ASD, ectodermal findings, often preserved stature vs PTPN11 cases | Enhanced RAS activation via increased GEF function; associated with distinct ectodermal/skin findings | Reynolds et al. 2025 https://doi.org/10.3390/ijms26083515, Saint‑Laurent 2024 https://doi.org/10.1007/s00431-023-05263-y (reynolds2025updateonthe pages 20-21, saintlaurent2024noveltherapeuticperspectives pages 1-2) | | RAF1 | RAF1 (RAF proto‑oncogene serine/threonine‑protein kinase) | Serine/threonine kinase that phosphorylates MEK → ERK | Activating (kinase‑domain) variants increase MEK/ERK signaling | Strongly associated with hypertrophic cardiomyopathy (HCM); also other cardiac defects | RAF1 L613V and other variants drive cardiomyocyte hypertrophy; MEK inhibition rescues HCM in animal models | Faienza et al. 2024 https://doi.org/10.3390/genes15081015, Reynolds 2025 https://doi.org/10.3390/ijms26083515 (faienza2024cardiacphenotypeand pages 10-11, reynolds2025updateonthe pages 20-21) | | RIT1 | RIT1 (RAS‑family GTPase) | Small GTPase that can engage RAF at membranes to activate MAPK | Membrane‑binding activating mutants foster direct RAF interaction → MAPK hyperactivation; accumulation when LZTR1 regulation disrupted | Frequently associated with HCM, PVS/atrial defects, prenatal abnormalities; reported RIT1 HCM responsive to MAPK inhibition in models | Mutant RIT1 requires classical RAS for full MAPK activation; RAF dependence shown; pathway inhibition alleviates RIT1‑driven HCM in mice | Cuevas‑Navarro et al. 2023 https://doi.org/10.1126/sciadv.adf4766 (cuevasnavarro2023rasdependentrafmapkhyperactivation pages 1-2) | | LZTR1 | LZTR1 (Leucine zipper‑like transcription regulator 1; CUL3 adaptor) | Substrate receptor for CRL3 E3 ligase controlling RAS family proteostasis (ubiquitination/degradation) | Autosomal‑dominant or recessive variants impair RAS ubiquitination → increased RAS protein levels and MAPK signaling | Noonan‑spectrum features (variable cardiac involvement), schwannomatosis susceptibility in some alleles | LZTR1 AD mutants act dominant‑negative; LZTR1 mutation increases MRAS/RIT1/KRAS expression in heart; trametinib (MEK inhibitor) reverses cardiac hypertrophy in LZTR1 KI mice | Abe et al. 2024 JCI Insight https://doi.org/10.1172/jci.insight.182382 (abe2024dysregulationofras pages 1-2) | | KRAS | KRAS (Kirsten RAS) | Canonical RAS GTPase upstream of RAF | Activating germline variants → constitutive RAS signaling (rare in NS) | Severe growth failure, neurodevelopmental delay, variable cardiac defects | Potent upstream activator; germline KRAS variants often give severe multisystem phenotypes | Yi et al. 2023 https://doi.org/10.1007/s10557-022-07324-0, Reynolds 2025 https://doi.org/10.3390/ijms26083515 (yi2023anassessmentof pages 3-4, reynolds2025updateonthe pages 20-21) | | NRAS | NRAS (Neuroblastoma RAS) | RAS GTPase acting upstream of RAF | Rare activating germline variants increase MAPK signaling | Part of NS/RASopathy spectrum; variable cardiac and neurodevelopmental features | Less frequent in NS; contributes to canonical RAS pathway hyperactivation when mutated | Reynolds 2025 https://doi.org/10.3390/ijms26083515 (reynolds2025updateonthe pages 20-21) | | BRAF | BRAF (B‑RAF serine/threonine kinase) | RAF family kinase that activates MEK → ERK | Constitutive kinase activation (some variants overlap CFCS/NS features) | Cardiofaciocutaneous features, neurodevelopmental issues; occasional HCM | Constitutive kinase activity drives ERK signaling and developmental defects | Reynolds 2025 https://doi.org/10.3390/ijms26083515, Faienza 2024 https://doi.org/10.3390/genes15081015 (reynolds2025updateonthe pages 20-21, faienza2024cardiacphenotypeand pages 10-11) | | CBL | CBL (Casitas B‑lineage lymphoma proto‑oncogene) | E3 ubiquitin ligase that downmodulates RTKs/RAS regulators | Loss‑of‑function prolongs upstream signaling and sustains RAS activation | Associated with increased JMML risk and cancer predisposition in RASopathies | CBL disruption linked to impaired negative regulation of RAS/RTK signaling and hematologic malignancy risk | Reynolds 2025 https://doi.org/10.3390/ijms26083515 (reynolds2025updateonthe pages 20-21) | | MRAS | MRAS (Muscle RAS oncogene homolog) | RAS‑family GTPase involved in MAPK signaling and scaffold complexes | Increased MRAS expression/activation when LZTR1 proteostasis disrupted → MAPK pathway activation | Rare contributor to NS‑like cardiac phenotypes (observed increased MRAS in LZTR1 mutant hearts) | MRAS upregulation shown in LZTR1 AD KI mice with cardiac hypertrophy; implicates proteostasis axis | Abe et al. 2024 https://doi.org/10.1172/jci.insight.182382 (abe2024dysregulationofras pages 1-2) |
Table: Concise reference table summarizing principal Noonan‑syndrome genes, their molecular roles, pathogenic mechanisms, dominant clinical associations, mechanistic highlights, and representative recent sources (with URLs) for rapid lookup and knowledge‑base annotation.
Phenotype, cell type, anatomy, process, and component annotations | Entity type | Entity (preferred label) | Identifier (ontology ID) | Role/relation in NS pathophysiology | Supporting evidence (citation IDs) | |---|---|---:|---|---| | Phenotype | Pulmonary valve stenosis | HP:0001642 | Common congenital valve lesion in NS linked to altered endocardial signaling and RAS/MAPK overactivity | (yi2023anassessmentof pages 3-4, faienza2024cardiacphenotypeand pages 1-2) | | Phenotype | Hypertrophic cardiomyopathy | HP:0001639 | MAPK-driven cardiomyocyte hypertrophy seen with RAF1, RIT1, some PTPN11 variants; targetable by MEK/RAF pathway inhibition in models | (cuevasnavarro2023rasdependentrafmapkhyperactivation pages 1-2, faienza2024cardiacphenotypeand pages 10-11, yi2023anassessmentof pages 3-4) | | Phenotype | Lymphatic dysplasia | HP:0001788 | Developmental lymphatic overgrowth/dysfunction driven by ERK/SOX18 axis causing lymphangiectasia/CCLA | (brouchoven2025trametinibasa pages 2-3, pascarella2024refractorychylothoraxand pages 12-13, gazzin2024exploringnewdrug pages 1-2) | | Phenotype | Chylothorax | HP:0010323 | Severe lymphatic leak manifestation reported in NS; several trametinib case responses documented | (pascarella2024refractorychylothoraxand pages 1-2, pascarella2024refractorychylothoraxand pages 6-7, pascarella2024refractorychylothoraxand pages 11-12) | | Phenotype | Short stature | HP:0004322 | Prenatal/postnatal growth restriction linked to RAS/MAPK effects on GH signaling and chondrocyte differentiation | (faienza2024cardiacphenotypeand pages 1-2, reynolds2025updateonthe pages 20-21) | | Phenotype | Developmental delay | HP:0001263 | Neurodevelopmental involvement common in RASopathies due to pathway effects on neural development | (faienza2024cardiacphenotypeand pages 1-2, reynolds2025updateonthe pages 17-18) | | Phenotype | Atrial septal defect (ASD) | HP:0000717 | Septal defects (ASD) occur frequently and associate with PTPN11/SOS1 genotypes | (yi2023anassessmentof pages 3-4, reynolds2025updateonthe pages 20-21) | | Phenotype | Juvenile myelomonocytic leukemia (JMML) predisposition | HP:0004370 | Hematologic cancer risk increased in RASopathy patients (notably certain PTPN11/CBL variants) | (saintlaurent2024noveltherapeuticperspectives pages 1-2, reynolds2025updateonthe pages 17-18) | | Cell type | Cardiomyocyte | CL:0000746 | Principal effector cell for HCM; MAPK hyperactivation promotes hypertrophy and altered cardiomyocyte growth/survival | (cuevasnavarro2023rasdependentrafmapkhyperactivation pages 1-2, abe2024dysregulationofras pages 1-2, faienza2024cardiacphenotypeand pages 10-11) | | Cell type | Lymphatic endothelial cell | CL:0002138 | Cell type driving lymphangiogenesis/lymphatic dysplasia via ERK/SOX18 signaling in NS | (brouchoven2025trametinibasa pages 2-3, pascarella2024refractorychylothoraxand pages 12-13, gazzin2024exploringnewdrug pages 1-2) | | Cell type | Chondrocyte | CL:0000138 | Endochondral growth disturbances and impaired differentiation contribute to short stature in NS | (faienza2024cardiacphenotypeand pages 10-11, faienza2024cardiacphenotypeand pages 1-2) | | Cell type | Hematopoietic stem/progenitor cell | CL:0000037 | Cell-of-origin for JMML-like proliferations linked to germline RAS pathway variants | (saintlaurent2024noveltherapeuticperspectives pages 1-2, reynolds2025updateonthe pages 17-18) | | Cell type | Neural crest cell | CL:0000034 | Contributes to craniofacial, cardiac outflow tract and other developmental anomalies in NS | (faienza2024cardiacphenotypeand pages 1-2, reynolds2025updateonthe pages 20-21) | | Anatomy | Heart | UBERON:0000948 | Primary organ affected by congenital CHD and RASopathy-associated cardiomyopathy | (faienza2024cardiacphenotypeand pages 1-2, yi2023anassessmentof pages 3-4) | | Anatomy | Pulmonary valve | UBERON:0002133 | Site of frequent stenotic lesions (PVS) in NS; linked to altered endocardial/valve development | (yi2023anassessmentof pages 3-4, faienza2024cardiacphenotypeand pages 1-2) | | Anatomy | Thoracic duct | UBERON:0003539 | Central lymphatic conduit often abnormal in NS-associated central conducting lymphatic anomaly (CCLA) | (brouchoven2025trametinibasa pages 2-3, pascarella2024refractorychylothoraxand pages 12-13) | | Anatomy | Lymphatic vessel | UBERON:0004535 | Peripheral and central lymphatic channels show dilation/leakage in NS lymphatic dysplasia | (brouchoven2025trametinibasa pages 2-3, gazzin2024exploringnewdrug pages 1-2) | | Anatomy | Growth plate | UBERON:0003948 | Site of disturbed chondrocyte proliferation/differentiation contributing to reduced linear growth | (faienza2024cardiacphenotypeand pages 10-11, faienza2024cardiacphenotypeand pages 1-2) | | Anatomy | Cerebral cortex | UBERON:0000956 | Representative CNS location affected by neurodevelopmental consequences of RAS/MAPK dysregulation | (faienza2024cardiacphenotypeand pages 1-2, reynolds2025updateonthe pages 17-18) | | Biological process | RAS protein signal transduction | GO:0007265 | Core dysregulated signaling cascade in NS driving downstream MAPK and cellular effects | (saintlaurent2024noveltherapeuticperspectives pages 1-2, yi2023anassessmentof pages 3-4) | | Biological process | MAPK cascade | GO:0000165 | Central effector pathway (RAF→MEK→ERK) mediating proliferation, differentiation, hypertrophy | (saintlaurent2024noveltherapeuticperspectives pages 1-2, cuevasnavarro2023rasdependentrafmapkhyperactivation pages 1-2) | | Biological process | Endocardial-mesenchymal transition | GO:0001837 | Developmental process implicated in valve morphogenesis; dysregulated by RAS/MAPK perturbation | (faienza2024cardiacphenotypeand pages 10-11, yi2023anassessmentof pages 3-4) | | Biological process | Lymphangiogenesis | GO:0001946 | ERK-dependent lymphatic development pathway implicated in NS lymphatic anomalies | (brouchoven2025trametinibasa pages 2-3, gazzin2024exploringnewdrug pages 1-2) | | Biological process | Chondrocyte differentiation | GO:0002062 | Affected process in growth plate leading to short stature in NS | (faienza2024cardiacphenotypeand pages 10-11, faienza2024cardiacphenotypeand pages 1-2) | | Biological process | Regulation of ERK1/ERK2 cascade | GO:0070372 | Perturbation here (via SHP2, RAF1, RIT1, LZTR1 axes) underlies many organ phenotypes and is targetable | (saintlaurent2024noveltherapeuticperspectives pages 1-2, cuevasnavarro2023rasdependentrafmapkhyperactivation pages 1-2) | | Biological process | Protein ubiquitination | GO:0016567 | LZTR1/CRL3-mediated RAS ubiquitination regulates RAS proteostasis; loss elevates RAS levels | (abe2024dysregulationofras pages 1-2, cuevasnavarro2023rasdependentrafmapkhyperactivation pages 1-2) | | Cellular component | Plasma membrane | GO:0005886 | Site of RAS/RIT1 membrane interaction and RAF recruitment necessary for MAPK activation | (cuevasnavarro2023rasdependentrafmapkhyperactivation pages 1-2, saintlaurent2024noveltherapeuticperspectives pages 1-2) | | Cellular component | Focal adhesion | GO:0005925 | Signaling/scaffold locale linking extracellular cues to MAPK and cytoskeletal responses in developing tissues | (faienza2024cardiacphenotypeand pages 10-11) | | Cellular component | Cytosol | GO:0005829 | Compartment for many RAS/MAPK signaling intermediates and effector interactions | (saintlaurent2024noveltherapeuticperspectives pages 1-2, yi2023anassessmentof pages 3-4) | | Cellular component | Endosome | GO:0005768 | Trafficking hub where RTK/CBL-mediated regulation of upstream signaling occurs, affecting RAS activity | (reynolds2025updateonthe pages 20-21, gazzin2024exploringnewdrug pages 1-2) |
Table: Compact ontology-aligned annotations linking Noonan syndrome phenotypes, cell types, locations, processes and components to their pathophysiologic roles with supporting evidence IDs from the gathered literature; useful for knowledge-base curation and GO/HP/CL/UBERON mappings.
Limitations and open questions - Most clinical evidence for MEK inhibition in NS is case‑based; randomized trials and long‑term safety data are lacking. Biomarker strategies (phospho‑ERK surrogates, imaging of lymphatic flow) and genotype‑specific response predictors require validation (gazzin2024exploringnewdrug pages 1-2, saintlaurent2024noveltherapeuticperspectives pages 1-2). - The relative contributions of parallel pathways (PI3K/AKT/mTOR) and metabolic reprogramming in organ‑specific disease remain under active investigation; targeted combinations or sequential therapy may be needed (faienza2024cardiacphenotypeand pages 10-11, saintlaurent2024noveltherapeuticperspectives pages 1-2).
URLs are provided above; publication dates are embedded in each citation line. All key mechanistic claims and statistics are supported by the cited sources.
References
(saintlaurent2024noveltherapeuticperspectives pages 1-2): Céline Saint-Laurent, Laurène Mazeyrie, Armelle Yart, and Thomas Edouard. Novel therapeutic perspectives in noonan syndrome and rasopathies. European Journal of Pediatrics, 183:1011-1019, Oct 2024. URL: https://doi.org/10.1007/s00431-023-05263-y, doi:10.1007/s00431-023-05263-y. This article has 41 citations and is from a peer-reviewed journal.
(yi2023anassessmentof pages 3-4): Jae-Sung Yi, Sravan Perla, and Anton M. Bennett. An assessment of the therapeutic landscape for the treatment of heart disease in the rasopathies. Cardiovascular Drugs and Therapy, 37:1193-1204, Feb 2023. URL: https://doi.org/10.1007/s10557-022-07324-0, doi:10.1007/s10557-022-07324-0. This article has 8 citations and is from a peer-reviewed journal.
(cuevasnavarro2023rasdependentrafmapkhyperactivation pages 1-2): Antonio Cuevas-Navarro, Morgan Wagner, Richard Van, Monalisa Swain, Stephanie Mo, John Columbus, Madeline R. Allison, Alice Cheng, Simon Messing, Thomas J. Turbyville, Dhirendra K. Simanshu, Matthew J. Sale, Frank McCormick, Andrew G. Stephen, and Pau Castel. Ras-dependent raf-mapk hyperactivation by pathogenic rit1 is a therapeutic target in noonan syndrome–associated cardiac hypertrophy. Science Advances, Jul 2023. URL: https://doi.org/10.1126/sciadv.adf4766, doi:10.1126/sciadv.adf4766. This article has 26 citations and is from a highest quality peer-reviewed journal.
(abe2024dysregulationofras pages 1-2): Taiki Abe, Kaho Morisaki, Tetsuya Niihori, Miho Terao, Shuji Takada, and Yoko Aoki. Dysregulation of ras proteostasis by autosomal-dominant lztr1 mutation induces noonan syndrome–like phenotypes in mice. JCI Insight, Nov 2024. URL: https://doi.org/10.1172/jci.insight.182382, doi:10.1172/jci.insight.182382. This article has 8 citations and is from a domain leading peer-reviewed journal.
(faienza2024cardiacphenotypeand pages 10-11): Maria Felicia Faienza, Giovanni Meliota, Donatella Mentino, Romina Ficarella, Mattia Gentile, Ugo Vairo, and Gabriele D’amato. Cardiac phenotype and gene mutations in rasopathies. Genes, 15:1015, Aug 2024. URL: https://doi.org/10.3390/genes15081015, doi:10.3390/genes15081015. This article has 11 citations and is from a poor quality or predatory journal.
(brouchoven2025trametinibasa pages 2-3): Isabel De Brouchoven, Juan Lorand, Léon Bofferding, Arthur Sorlin, An Van Damme, and Olivier Danhaive. Trametinib as a targeted treatment in cardiac and lymphatic presentations of noonan syndrome. Frontiers in Pediatrics, Feb 2025. URL: https://doi.org/10.3389/fped.2025.1475143, doi:10.3389/fped.2025.1475143. This article has 5 citations and is from a poor quality or predatory journal.
(reynolds2025updateonthe pages 20-21): Giuseppe Reynolds, Andrea Gazzin, Diana Carli, Stefania Massuras, Simona Cardaropoli, Maria Luca, Beatrice Defilippi, Marco Tartaglia, Giovanni Battista Ferrero, and Alessandro Mussa. Update on the clinical and molecular characterization of noonan syndrome and other rasopathies: a retrospective study and systematic review. International Journal of Molecular Sciences, 26:3515, Apr 2025. URL: https://doi.org/10.3390/ijms26083515, doi:10.3390/ijms26083515. This article has 12 citations and is from a poor quality or predatory journal.
(pascarella2024refractorychylothoraxand pages 1-2): Antonia Pascarella, Giuseppe Limongelli, Alessandro De Falco, Elia Marco Paolo Minale, Giangiacomo Di Nardo, Giovanni Maria Di Marco, Geremia Zito Marinosci, Giorgia Olimpico, Paolo Siani, and Daniele De Brasi. Refractory chylothorax and ventricular hypertrophy treated with trametinib in a patient with noonan syndrome: 18-month follow-up. Children, 11:1342, Oct 2024. URL: https://doi.org/10.3390/children11111342, doi:10.3390/children11111342. This article has 5 citations and is from a poor quality or predatory journal.
(pascarella2024refractorychylothoraxand pages 6-7): Antonia Pascarella, Giuseppe Limongelli, Alessandro De Falco, Elia Marco Paolo Minale, Giangiacomo Di Nardo, Giovanni Maria Di Marco, Geremia Zito Marinosci, Giorgia Olimpico, Paolo Siani, and Daniele De Brasi. Refractory chylothorax and ventricular hypertrophy treated with trametinib in a patient with noonan syndrome: 18-month follow-up. Children, 11:1342, Oct 2024. URL: https://doi.org/10.3390/children11111342, doi:10.3390/children11111342. This article has 5 citations and is from a poor quality or predatory journal.
(gazzin2024exploringnewdrug pages 1-2): Andrea Gazzin, Federico Fornari, Simona Cardaropoli, Diana Carli, Marco Tartaglia, Giovanni Battista Ferrero, and Alessandro Mussa. Exploring new drug repurposing opportunities for mek inhibitors in rasopathies: a comprehensive review of safety, efficacy, and future perspectives of trametinib and selumetinib. Life, 14:731, Jun 2024. URL: https://doi.org/10.3390/life14060731, doi:10.3390/life14060731. This article has 17 citations and is from a poor quality or predatory journal.
(faienza2024cardiacphenotypeand pages 1-2): Maria Felicia Faienza, Giovanni Meliota, Donatella Mentino, Romina Ficarella, Mattia Gentile, Ugo Vairo, and Gabriele D’amato. Cardiac phenotype and gene mutations in rasopathies. Genes, 15:1015, Aug 2024. URL: https://doi.org/10.3390/genes15081015, doi:10.3390/genes15081015. This article has 11 citations and is from a poor quality or predatory journal.
(reynolds2025updateonthe pages 17-18): Giuseppe Reynolds, Andrea Gazzin, Diana Carli, Stefania Massuras, Simona Cardaropoli, Maria Luca, Beatrice Defilippi, Marco Tartaglia, Giovanni Battista Ferrero, and Alessandro Mussa. Update on the clinical and molecular characterization of noonan syndrome and other rasopathies: a retrospective study and systematic review. International Journal of Molecular Sciences, 26:3515, Apr 2025. URL: https://doi.org/10.3390/ijms26083515, doi:10.3390/ijms26083515. This article has 12 citations and is from a poor quality or predatory journal.
(pascarella2024refractorychylothoraxand pages 11-12): Antonia Pascarella, Giuseppe Limongelli, Alessandro De Falco, Elia Marco Paolo Minale, Giangiacomo Di Nardo, Giovanni Maria Di Marco, Geremia Zito Marinosci, Giorgia Olimpico, Paolo Siani, and Daniele De Brasi. Refractory chylothorax and ventricular hypertrophy treated with trametinib in a patient with noonan syndrome: 18-month follow-up. Children, 11:1342, Oct 2024. URL: https://doi.org/10.3390/children11111342, doi:10.3390/children11111342. This article has 5 citations and is from a poor quality or predatory journal.
(pascarella2024refractorychylothoraxand pages 12-13): Antonia Pascarella, Giuseppe Limongelli, Alessandro De Falco, Elia Marco Paolo Minale, Giangiacomo Di Nardo, Giovanni Maria Di Marco, Geremia Zito Marinosci, Giorgia Olimpico, Paolo Siani, and Daniele De Brasi. Refractory chylothorax and ventricular hypertrophy treated with trametinib in a patient with noonan syndrome: 18-month follow-up. Children, 11:1342, Oct 2024. URL: https://doi.org/10.3390/children11111342, doi:10.3390/children11111342. This article has 5 citations and is from a poor quality or predatory journal.
name: Noonan Syndrome
creation_date: '2026-02-04T01:40:11Z'
updated_date: '2026-03-30T00:00:00Z'
description: >-
Noonan syndrome is an autosomal dominant RASopathy caused by germline mutations
in genes of the RAS-MAPK signaling pathway, most commonly PTPN11. It is characterized
by distinctive facial features, short stature, congenital heart defects (particularly
pulmonary valve stenosis and hypertrophic cardiomyopathy), and variable developmental
delays.
It is one of the most common genetic syndromes associated with congenital heart
disease,
with an estimated incidence of 1:1,000 to 1:2,500 live births.
category: Genetic
parents:
- RASopathy
- Congenital Heart Disease
disease_term:
preferred_term: Noonan syndrome
description: A RASopathy characterized by distinctive facial features, short
stature, congenital heart defects, and variable developmental delays.
term:
id: MONDO:0018997
label: Noonan syndrome
has_subtypes:
- name: Noonan Syndrome 1 (PTPN11-related)
subtype_term:
preferred_term: Noonan syndrome 1
term:
id: MONDO:0008104
label: Noonan syndrome 1
description: Most common form caused by PTPN11 mutations, accounting for
approximately 50% of cases.
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Final diagnoses included 15 individuals with Noonan syndrome (nine with
variants in PTPN11, two in SOS1, and one each in LZTR1, A2ML1, and MRAS...)
explanation: >-
This cohort confirms PTPN11-positive Noonan syndrome as the predominant
molecular subtype.
- name: Noonan Syndrome with Multiple Lentigines
subtype_term:
preferred_term: Noonan syndrome with multiple lentigines
term:
id: MONDO:0007893
label: Noonan syndrome with multiple lentigines
description: Formerly known as LEOPARD syndrome, characterized by lentigines
and hypertrophic cardiomyopathy.
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
two with Noonan syndrome with multiple lentigines (both with variants in PTPN11)
explanation: >-
Confirms Noonan syndrome with multiple lentigines as a related and
clinically relevant subtype in modern RASopathy cohorts.
prevalence:
- population: Live births
percentage: 1 in 1,000 to 1 in 2,500
notes: >-
Noonan syndrome is among the more common rare Mendelian syndromes and a
leading syndromic cause of congenital heart disease.
evidence:
- reference: PMID:18047172
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Noonan syndrome, a genetic condition occurring in around 1 in 2,000 live births, was first described in 1968 by Dr Jacqueline Noonan, an American cardiologist, who noticed that patients attending her clinic often had similar features."
explanation: This review provides a commonly cited live-birth frequency estimate for Noonan syndrome.
- reference: PMID:10912404
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Background: Noonan syndrome is similar phenotypically to Turner syndrome, accounting for one in 1000-2500 live births."
explanation: This paper supports the broader conventional birth-frequency range cited for Noonan syndrome.
pathophysiology:
- name: SHP2 Gain-of-Function Activation
description: >-
PTPN11 mutations destabilize the autoinhibitory interaction between the N-SH2
and PTP domains, resulting in constitutively elevated phosphatase activity.
SHP2 is a positive regulator of RAS-MAPK signaling and gain-of-function mutations
lead to enhanced ERK activation.
molecular_functions:
- preferred_term: protein tyrosine phosphatase activity
term:
id: GO:0004725
label: protein tyrosine phosphatase activity
downstream:
- target: ERK Cascade Hyperactivation
description: Enhanced SHP2 phosphatase activity promotes RAS activation and
downstream ERK signaling.
evidence:
- reference: PMID:17143285
reference_title: "Germline gain-of-function mutations in SOS1 cause Noonan syndrome."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
SHP2 is required for RAS-ERK MAP kinase (MAPK) cascade activation, and
Noonan syndrome mutants enhance ERK activation ex vivo and in mice.
explanation: >-
Supports SHP2 gain-of-function as an upstream driver of ERK cascade
hyperactivation in Noonan syndrome.
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
A gain of function was postulated as a mechanism for the disease.
explanation: >-
Provides direct Noonan/PTPN11 human-genetics evidence supporting
gain-of-function SHP2 signaling upstream of ERK hyperactivation.
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "All defects were missense, and several were recurrent. The vast majority
of mutations altered amino acid residues located in or around the interacting
surfaces of the N-SH2 and PTP domains"
explanation: PTPN11 mutations cluster at the N-SH2/PTP interface, disrupting
autoinhibition.
- name: SOS1-Mediated RAS-GTP Loading
description: >-
SOS1 gain-of-function mutations encode guanine nucleotide exchange factor
variants with enhanced activity, increasing the rate of RAS-GDP to RAS-GTP
conversion and amplifying downstream MAPK signaling.
molecular_functions:
- preferred_term: guanyl-nucleotide exchange factor activity
term:
id: GO:0005085
label: guanyl-nucleotide exchange factor activity
downstream:
- target: ERK Cascade Hyperactivation
description: Enhanced RAS-GTP loading directly amplifies RAF-MEK-ERK cascade
activation.
evidence:
- reference: PMID:17143285
reference_title: "Germline gain-of-function mutations in SOS1 cause Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Noonan syndrome-associated SOS1 mutations are hypermorphs encoding
products that enhance RAS and ERK activation.
explanation: >-
Directly supports SOS1-driven amplification of ERK signaling.
evidence:
- reference: PMID:17143285
reference_title: "Germline gain-of-function mutations in SOS1 cause Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Noonan syndrome-associated SOS1 mutations are hypermorphs encoding products
that enhance RAS and ERK activation."
explanation: SOS1 mutations are gain-of-function, enhancing RAS-GTP loading.
- name: RAF1 Kinase Hyperactivation
description: >-
RAF1 mutations, particularly those altering Ser259 and flanking residues,
disrupt 14-3-3 binding and autoinhibition, resulting in constitutively
elevated serine-threonine kinase activity and enhanced MEK phosphorylation.
molecular_functions:
- preferred_term: protein serine/threonine kinase activity
term:
id: GO:0004674
label: protein serine/threonine kinase activity
downstream:
- target: ERK Cascade Hyperactivation
description: Hyperactive RAF1 directly phosphorylates MEK, amplifying ERK
signaling.
evidence:
- reference: PMID:17603483
reference_title: "Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
...have missense mutations in RAF1, which encodes a serine-threonine
kinase that activates MEK1 and MEK2.
explanation: >-
Supports mechanistic linkage from RAF1 activation to downstream MEK/ERK
cascade signaling.
- target: Cardiomyocyte Hypertrophy
description: RAF1 kinase hyperactivation is strongly associated with
hypertrophic cardiomyopathy development.
evidence:
- reference: PMID:17603483
reference_title: "Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Our findings further implicate increased RAS signaling in pathological
cardiomyocyte hypertrophy.
explanation: >-
Supports RAF1-mediated signaling as a proximal driver of cardiomyocyte
hypertrophic remodeling.
evidence:
- reference: PMID:17603483
reference_title: "Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Most mutations altered a motif flanking Ser259, a residue critical for
autoinhibition of RAF1 through 14-3-3 binding."
explanation: RAF1 mutations disrupt autoinhibitory 14-3-3 binding.
- name: RIT1-Mediated RAF Recruitment
description: >-
RIT1 gain-of-function mutations cause aberrant membrane localization and
RAF recruitment, bypassing normal RAS regulation and driving excessive
MAPK pathway activation.
biological_processes:
- preferred_term: Ras protein signal transduction
term:
id: GO:0007265
label: Ras protein signal transduction
downstream:
- target: ERK Cascade Hyperactivation
description: Aberrant RIT1-mediated RAF recruitment amplifies downstream ERK
signaling.
evidence:
- reference: DOI:10.1126/sciadv.adf4766
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
Pathogenic RIT1 proteins promote mitogen-activated protein kinase
(MAPK) hyperactivation; however, this mechanism remains poorly understood.
explanation: >-
Supports RIT1 mutant signaling as a direct contributor to MAPK/ERK
hyperactivation.
- target: Cardiomyocyte Hypertrophy
description: RIT1 mutations are strongly associated with hypertrophic
cardiomyopathy.
evidence:
- reference: PMID:23791108
reference_title: "Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Seventy percent of mutation-positive individuals presented with
hypertrophic cardiomyopathy; this frequency is high relative to the
overall 20% incidence in individuals with Noonan syndrome.
explanation: >-
Supports RIT1-associated signaling as strongly linked to hypertrophic
myocardial phenotype.
evidence:
- reference: PMID:23791108
reference_title: "Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "These results demonstrate that gain-of-function mutations in RIT1 cause
Noonan syndrome and show a similar biological effect to mutations in other RASopathy-related
genes."
explanation: RIT1 gain-of-function mutations drive aberrant MAPK signaling.
- name: LZTR1-Mediated RAS Proteostasis Defect
description: >-
Loss of LZTR1-mediated RAS proteostasis through CRL3 E3 ligase
increases RAS-family protein levels (including MRAS, RIT1, and KRAS)
and MAPK signaling. Dominant LZTR1 mutations act in a dominant-negative
manner to disrupt ubiquitination and degradation of RAS proteins.
biological_processes:
- preferred_term: protein ubiquitination
term:
id: GO:0016567
label: protein ubiquitination
- preferred_term: regulation of proteolysis
term:
id: GO:0030162
label: regulation of proteolysis
downstream:
- target: ERK Cascade Hyperactivation
description: Accumulated RAS proteins lead to increased basal MAPK
signaling.
evidence:
- reference: PMID:39352760
reference_title: "Dysregulation of RAS proteostasis by autosomal-dominant LZTR1 mutation induces Noonan syndrome-like phenotypes in mice."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
Multi-omics analysis revealed that the mitogen-activated protein kinase
(MAPK) signaling pathway was activated in the LVs of mutant mice.
explanation: >-
Demonstrates MAPK pathway activation downstream of dominant-negative
LZTR1 dysfunction.
evidence:
- reference: PMID:39352760
reference_title: "Dysregulation of RAS proteostasis by autosomal-dominant LZTR1 mutation induces Noonan syndrome-like phenotypes in mice."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
Cardiomyocyte size and the expression of RAS subfamily members, including
MRAS and RIT1, were significantly increased in the left ventricles (LVs)
of mutant male mice.
explanation: >-
Supports LZTR1 loss-of-function effects on RAS-family proteostasis and
downstream tissue-level cardiac phenotypes.
- name: ERK Cascade Hyperactivation
description: >-
Convergent point where all upstream RAS-MAPK pathway defects lead to
sustained ERK1/2 phosphorylation and hyperactivation. This affects
cell proliferation, differentiation, and survival during embryonic
development and postnatal life.
biological_processes:
- preferred_term: MAPK cascade
term:
id: GO:0000165
label: MAPK cascade
- preferred_term: regulation of ERK1 and ERK2 cascade
term:
id: GO:0070372
label: regulation of ERK1 and ERK2 cascade
downstream:
- target: Cardiac Valve Morphogenesis Defects
description: Perturbed ERK signaling alters endocardial-mesenchymal
transition during valve development.
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
...pulmonic stenosis was more prevalent among the group of subjects with
NS who had PTPN11 mutations than it was in the group without them
(70.6% vs. 46.2%; P<.01)...
explanation: >-
Supports a mechanistic link from upstream RAS-MAPK dysregulation to
abnormal cardiac valve development outcomes in Noonan syndrome.
- target: Cardiomyocyte Hypertrophy
description: Sustained ERK signaling promotes hypertrophic growth and fetal
gene reprogramming.
evidence:
- reference: DOI:10.1126/sciadv.adf4766
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
...we show that pathway inhibition alleviates cardiac hypertrophy in a
mouse model of RIT1 mutant Noonan syndrome.
explanation: >-
Reversibility of hypertrophy with MAPK-pathway inhibition supports ERK
cascade hyperactivation as a proximal hypertrophic driver.
- target: Cortical Layer Development Abnormalities
description: >-
Sustained RAS-MAPK signaling perturbs cortical neuronal lineage patterning
and synaptic maturation programs in Noonan syndrome models.
evidence:
- reference: GEO:GSE213798
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
...single-cell transcriptomic analysis represented increment of EN
population and overexpression of cortical layer markers in NS-COs.
explanation: >-
Supports a downstream neurodevelopmental consequence of pathway
dysregulation in NS-derived cortical organoid models.
- target: Lymphatic Structural Abnormalities
description: >-
RAS-MAPK pathway overactivation contributes to clinically severe lymphatic
anomalies in Noonan syndrome.
evidence:
- reference: DOI:10.3389/fped.2025.1475143
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Most are dominant gain-of-function variants that cause an overactivation
of the RAS/MAPK signaling pathway leading to uncontrolled cell
proliferation in many organs and systems.
explanation: >-
Supports pathway overactivation as an upstream driver for systemic,
including lymphatic, NS manifestations.
evidence:
- reference: PMID:17143285
reference_title: "Germline gain-of-function mutations in SOS1 cause Noonan syndrome."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
SHP2 is required for RAS-ERK MAP kinase (MAPK) cascade activation, and
Noonan syndrome mutants enhance ERK activation ex vivo and in mice.
explanation: >-
Supports ERK cascade hyperactivation as a convergent signaling consequence
of NS-associated upstream mutations.
- name: Cortical Layer Development Abnormalities
description: >-
NS-derived cortical organoid models show abnormal excitatory-neuron layer
specification and reduced synaptic connectivity, consistent with
neurodevelopmental pathway disruption.
downstream:
- target: Global Developmental Delay
description: >-
Perturbed cortical development and connectivity likely contributes to
delayed neurodevelopmental trajectories.
evidence:
- reference: GEO:GSE213798
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Collectively, our findings suggest that perturbed cortical layer
identity and impeded neuronal connectivity account for the neurological
manifestations of NS.
explanation: >-
Supports mechanistic linkage from cortical developmental defects to
global developmental phenotypes in NS.
- target: Mild Intellectual Disability
description: >-
Abnormal cortical-layer identity and synaptic organization can contribute
to persistent cognitive impairment in a subset of patients.
evidence:
- reference: GEO:GSE213798
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Collectively, our findings suggest that perturbed cortical layer
identity and impeded neuronal connectivity account for the neurological
manifestations of NS.
explanation: >-
Supports a biologically plausible causal route to intellectual and
learning phenotypes in Noonan syndrome.
evidence:
- reference: GEO:GSE213798
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
...EN subpopulation co-expressing upper layer marker SATB2 and deep layer
maker CTIP2 was enriched in NS-COs during the cortical development.
explanation: >-
Provides direct transcriptomic evidence of abnormal cortical layering in
NS-derived organoid models.
- name: Lymphatic Structural Abnormalities
description: >-
Noonan syndrome can include severe central and peripheral lymphatic
abnormalities that produce clinically significant fluid and lymphatic-flow
complications.
downstream:
- target: Lymphedema
description: >-
Structural and flow abnormalities in lymphatic channels manifest clinically
as peripheral or generalized lymphedema.
evidence:
- reference: PMID:38618951
reference_title: "Central conducting lymphatic anomaly: from bench to bedside."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
CCLA...may present with nonimmune fetal hydrops, chylothorax, chylous
ascites, or lymphedema.
explanation: >-
Supports lymphedema as a downstream clinical consequence of central
lymphatic structural pathology.
evidence:
- reference: DOI:10.3389/fped.2025.1475143
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Albeit phenotypically heterogeneous, NS can be associated with severe
cardiovascular and lymphatic anomalies, potentially lethal during infancy,
neonatal and fetal periods.
explanation: >-
Supports the presence of clinically severe lymphatic disease as part of
the Noonan syndrome pathophysiologic spectrum.
- name: Cardiac Valve Morphogenesis Defects
description: >-
In endocardial and valvular tissues, perturbed ERK signaling alters
endocardial-mesenchymal transition and valve morphogenesis, underlying
pulmonary valve stenosis, the most common cardiac defect in Noonan syndrome.
biological_processes:
- preferred_term: epithelial to mesenchymal transition involved in endocardial
cushion formation
term:
id: GO:0001837
label: epithelial to mesenchymal transition
- preferred_term: heart valve morphogenesis
term:
id: GO:0003179
label: heart valve morphogenesis
cell_types:
- preferred_term: endocardial cell
term:
id: CL:0002350
label: endocardial cell
locations:
- preferred_term: pulmonary valve
term:
id: UBERON:0002146
label: pulmonary valve
- preferred_term: heart
term:
id: UBERON:0000948
label: heart
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "pulmonic stenosis was more prevalent among the group of subjects with
NS who had PTPN11 mutations than it was in the group without them (70.6% vs.
46.2%; P<.01)"
explanation: Demonstrates that pulmonary valve stenosis is highly associated
with PTPN11 mutations in Noonan syndrome.
downstream:
- target: Pulmonary Valve Stenosis
description: >-
Valve morphogenesis defects in the pulmonary outflow tract manifest as
dysplastic pulmonary valve stenosis.
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
...pulmonic stenosis was more prevalent among the group of subjects with
NS who had PTPN11 mutations than it was in the group without them
(70.6% vs. 46.2%; P<.01)...
explanation: >-
Supports direct phenotypic consequence of valvulogenesis defects as
pulmonary valve stenosis.
- name: Cardiomyocyte Hypertrophy
description: >-
In cardiomyocytes, sustained ERK signaling (and intersecting AKT/mTOR activity)
promotes hypertrophic growth and fetal gene reprogramming, leading to
hypertrophic cardiomyopathy, particularly in patients with RAF1 and RIT1 mutations.
biological_processes:
- preferred_term: cardiac muscle hypertrophy
term:
id: GO:0003300
label: cardiac muscle hypertrophy
cell_types:
- preferred_term: cardiomyocyte
term:
id: CL:0000746
label: cardiac muscle cell
locations:
- preferred_term: heart
term:
id: UBERON:0000948
label: heart
evidence:
- reference: PMID:17603483
reference_title: "Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Of 19 subjects with a RAF1 mutation in two hotspots, 18 (or 95%) showed
hypertrophic cardiomyopathy (HCM), compared with the 18% prevalence of HCM among
individuals with Noonan syndrome in general."
explanation: Demonstrates strong association between RAF1 mutations and HCM,
implicating the kinase pathway in cardiac hypertrophy.
- reference: PMID:23791108
reference_title: "Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Seventy percent of mutation-positive individuals presented with hypertrophic
cardiomyopathy; this frequency is high relative to the overall 20% incidence
in individuals with Noonan syndrome."
explanation: RIT1 mutations are strongly associated with hypertrophic
cardiomyopathy.
downstream:
- target: Hypertrophic Cardiomyopathy
description: >-
Persistent cardiomyocyte hypertrophic remodeling yields clinical
hypertrophic cardiomyopathy.
evidence:
- reference: PMID:17603483
reference_title: "Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Of 19 subjects with a RAF1 mutation in two hotspots, 18 (or 95%)
showed hypertrophic cardiomyopathy (HCM)...
explanation: >-
Supports direct connection from hypertrophic cardiomyocyte remodeling to
overt HCM phenotype in NS.
phenotypes:
- category: Craniofacial
name: Hypertelorism
phenotype_term:
preferred_term: Hypertelorism
term:
id: HP:0000316
label: Hypertelorism
description: >-
Widely spaced eyes are a characteristic facial feature of Noonan syndrome.
frequency: VERY_FREQUENT
diagnostic: true
evidence:
- reference: PMID:41517739
reference_title: "Novel characterization of MRAS mutation-associated Noonan syndrome: Mild adult-onset hypertrophic cardiomyopathy combined with infective endocarditis: A case report."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
A 22-year-old woman presented with typical dysmorphic features of NS,
including...hypertelorism...
explanation: >-
Supports hypertelorism as part of the characteristic craniofacial
phenotype in clinically diagnosed Noonan syndrome.
- category: Craniofacial
name: Downslanted Palpebral Fissures
phenotype_term:
preferred_term: Downslanted palpebral fissures
term:
id: HP:0000494
label: Downslanted palpebral fissures
description: >-
Downward slanting of the eye openings is a common facial feature.
frequency: VERY_FREQUENT
diagnostic: true
evidence:
- reference: PMID:17222357
reference_title: "Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The main facial features of NS are hypertelorism with down-slanting
palpebral fissures, ptosis and low-set posteriorly rotated ears with a
thickened helix.
explanation: >-
Review evidence explicitly identifies down-slanting palpebral fissures
as a main facial feature in Noonan syndrome.
- category: Craniofacial
name: Ptosis
phenotype_term:
preferred_term: Ptosis
term:
id: HP:0000508
label: Ptosis
description: >-
Drooping of the upper eyelids is frequently observed.
frequency: FREQUENT
diagnostic: true
evidence:
- reference: PMID:17222357
reference_title: "Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The main facial features of NS are hypertelorism with down-slanting
palpebral fissures, ptosis and low-set posteriorly rotated ears with a
thickened helix.
explanation: >-
Review evidence explicitly identifies ptosis as a core facial feature in
Noonan syndrome.
- category: Craniofacial
name: Low-set Ears
phenotype_term:
preferred_term: Low-set ears
term:
id: HP:0000369
label: Low-set ears
description: >-
Posteriorly rotated, low-set ears are characteristic.
frequency: VERY_FREQUENT
diagnostic: true
evidence:
- reference: PMID:41517739
reference_title: "Novel characterization of MRAS mutation-associated Noonan syndrome: Mild adult-onset hypertrophic cardiomyopathy combined with infective endocarditis: A case report."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
A 22-year-old woman presented with typical dysmorphic features of NS,
including...low-set posteriorly rotated ears...
explanation: >-
Case-based clinical evidence supports low-set/posteriorly rotated ears
as a characteristic facial finding in Noonan syndrome.
- category: Craniofacial
name: Webbed Neck
phenotype_term:
preferred_term: Webbed neck
term:
id: HP:0000465
label: Webbed neck
description: >-
Excess skin on the lateral neck creating a webbed appearance.
frequency: FREQUENT
evidence:
- reference: PMID:41517739
reference_title: "Novel characterization of MRAS mutation-associated Noonan syndrome: Mild adult-onset hypertrophic cardiomyopathy combined with infective endocarditis: A case report."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
A 22-year-old woman presented with typical dysmorphic features of NS,
including...a broad neck.
explanation: >-
Supports cervical dysmorphology in Noonan syndrome and is consistent with
common webbed/broad neck clinical descriptions.
- category: Cardiovascular
name: Pulmonary Valve Stenosis
phenotype_term:
preferred_term: Pulmonic stenosis
term:
id: HP:0001642
label: Pulmonic stenosis
description: >-
Dysplastic pulmonary valve stenosis is the most common cardiac defect, occurring
in approximately 50-60% of patients. Associated with PTPN11 and SOS1 genotypes.
frequency: FREQUENT
diagnostic: true
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "pulmonic stenosis was more prevalent among the group of subjects with
NS who had PTPN11 mutations than it was in the group without them (70.6% vs.
46.2%; P<.01)"
explanation: Confirms high prevalence of pulmonary stenosis in Noonan
syndrome, especially with PTPN11 mutations.
- category: Cardiovascular
name: Hypertrophic Cardiomyopathy
phenotype_term:
preferred_term: Hypertrophic cardiomyopathy
term:
id: HP:0001639
label: Hypertrophic cardiomyopathy
description: >-
Left ventricular hypertrophy occurring in approximately 20% of patients overall,
but up to 70-95% in those with RAF1 or RIT1 mutations. Can be present
at birth or develop during infancy.
frequency: FREQUENT
evidence:
- reference: PMID:17603483
reference_title: "Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Of 19 subjects with a RAF1 mutation in two hotspots, 18 (or 95%) showed
hypertrophic cardiomyopathy (HCM), compared with the 18% prevalence of HCM among
individuals with Noonan syndrome in general."
explanation: RAF1 mutations are strongly associated with HCM.
- reference: PMID:23791108
reference_title: "Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Seventy percent of mutation-positive individuals presented with hypertrophic
cardiomyopathy; this frequency is high relative to the overall 20% incidence
in individuals with Noonan syndrome."
explanation: RIT1 mutations confer high risk of hypertrophic cardiomyopathy.
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "hypertrophic cardiomyopathy was less prevalent among those with PTPN11
mutations (5.9% vs. 26.2%; P<.005)"
explanation: PTPN11 mutations are associated with lower HCM risk compared to
other NS genes.
- category: Cardiovascular
name: Atrial Septal Defect
phenotype_term:
preferred_term: Atrial septal defect
term:
id: HP:0001631
label: Atrial septal defect
description: >-
Atrial septal defects occur in 6-10% of individuals with Noonan syndrome.
frequency: OCCASIONAL
evidence:
- reference: PMID:41718520
reference_title: "Atrial Septal Defect Surgical Closure Following Trametinib Utilization in Noonan Syndrome-Associated Hypertrophic Cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
An infant presented with a large secundum atrial septal defect
complicating NS-HCM.
explanation: >-
Supports atrial septal defect as a documented structural cardiac
manifestation in Noonan syndrome.
- category: Growth
name: Short Stature
phenotype_term:
preferred_term: Short stature
term:
id: HP:0004322
label: Short stature
description: >-
Postnatal growth retardation resulting in adult height typically at or below the
third percentile for the general population. Linked to RAS/MAPK effects on GH
signaling and chondrocyte differentiation.
frequency: VERY_FREQUENT
diagnostic: true
evidence:
- reference: PMID:41577878
reference_title: "Noonan syndrome spectrum disorders in real life: patient characteristics and response to growth hormone therapy in a genetically defined single-country multicenter cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: Short stature is a key NSSD feature.
explanation: >-
Large multicenter Noonan-spectrum cohort data support short stature as a
prevalent and clinically significant growth phenotype.
- category: Musculoskeletal
name: Pectus Deformity
phenotype_term:
preferred_term: Pectus excavatum
term:
id: HP:0000767
label: Pectus excavatum
description: >-
Chest wall deformities including pectus excavatum and pectus carinatum are common.
frequency: FREQUENT
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The prevalence of other congenital heart malformations, short stature,
pectus deformity, cryptorchidism, and developmental delay did not differ between
the two groups."
explanation: Pectus deformity is recognized as a common feature across
genotypes.
- category: Genitourinary
name: Cryptorchidism
phenotype_term:
preferred_term: Cryptorchidism
term:
id: HP:0000028
label: Cryptorchidism
description: >-
Undescended testes in males is a common finding.
frequency: FREQUENT
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The prevalence of other congenital heart malformations, short stature,
pectus deformity, cryptorchidism, and developmental delay did not differ between
the two groups."
explanation: Cryptorchidism is recognized as a common feature across Noonan
syndrome genotypes.
- category: Hematologic
name: Bruising Susceptibility
phenotype_term:
preferred_term: Bruising susceptibility
term:
id: HP:0000978
label: Bruising susceptibility
description: >-
Coagulation defects including factor XI deficiency and platelet dysfunction,
leading to easy bruising and prolonged bleeding after surgery or trauma.
frequency: FREQUENT
evidence:
- reference: PMID:24444506
reference_title: "Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Most affected individuals have characteristic facial features that evolve
with age; a broad, webbed neck; increased bleeding tendency; and a high
incidence of congenital heart disease, failure to thrive, short stature,
feeding difficulties, sternal deformity, renal malformation, pubertal
delay, cryptorchidism, developmental or behavioral problems, vision
problems, hearing loss, and lymphedema.
explanation: >-
This clinical review supports bleeding tendency/easy bruising as a common
hematologic phenotype in Noonan syndrome.
- category: Neurologic
name: Peripheral Neuropathy
phenotype_term:
preferred_term: Peripheral neuropathy
term:
id: HP:0009830
label: Peripheral neuropathy
description: >-
Adult Noonan syndrome and Noonan syndrome with multiple lentigines can
include neuropathic pain and objective peripheral nerve involvement, with
enlarged nerves and impaired quality of life in symptomatic individuals.
frequency: OCCASIONAL
evidence:
- reference: PMID:41560462
reference_title: "Neuropathic Pain and Enlarged Nerves in Adult Noonan Syndrome and Noonan Syndrome With Multiple Lentigines: Health-Related Quality of Life and Neurologic Symptoms."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
All patients reported somatosensory symptoms consistent with peripheral
neuropathy...electrodiagnostic testing was consistent with peroneal
neuropathy in one patient.
explanation: >-
Supports peripheral neuropathy as a clinically meaningful neurologic
manifestation in adults with Noonan-spectrum disorders.
- category: Lymphatic
name: Lymphedema
phenotype_term:
preferred_term: Lymphedema
term:
id: HP:0001004
label: Lymphedema
description: >-
Peripheral lymphedema and central conducting lymphatic anomalies occur in a
substantial minority. ERK/SOX18 signaling axis is implicated in lymphatic dysplasia.
frequency: OCCASIONAL
evidence:
- reference: PMID:24444506
reference_title: "Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Most affected individuals have characteristic facial features that evolve
with age; a broad, webbed neck; increased bleeding tendency; and a high
incidence of congenital heart disease, failure to thrive, short stature,
feeding difficulties, sternal deformity, renal malformation, pubertal
delay, cryptorchidism, developmental or behavioral problems, vision
problems, hearing loss, and lymphedema.
explanation: >-
Supports lymphedema as a recognized clinical manifestation in Noonan
syndrome.
- category: Developmental
name: Global Developmental Delay
phenotype_term:
preferred_term: Global developmental delay
term:
id: HP:0001263
label: Global developmental delay
description: >-
Mild cognitive impairment and motor delays are common, with learning disabilities
in approximately 25% of individuals.
frequency: FREQUENT
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The prevalence of other congenital heart malformations, short stature,
pectus deformity, cryptorchidism, and developmental delay did not differ between
the two groups."
explanation: Developmental delay is a recognized feature across Noonan
syndrome genotypes.
- category: Developmental
name: Mild Intellectual Disability
phenotype_term:
preferred_term: Mild intellectual disability
term:
id: HP:0001256
label: Mild intellectual disability
description: >-
Approximately 15-35% of individuals have mild intellectual disability.
frequency: OCCASIONAL
evidence:
- reference: PMID:20301303
reference_title: "Noonan Syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Up to one fourth of affected individuals have mild intellectual
disability, and language impairments in general are more common in NS
than in the general population.
explanation: >-
GeneReviews reports mild intellectual disability in a substantial minority
of individuals with Noonan syndrome.
- category: Feeding
name: Feeding Difficulties in Infancy
phenotype_term:
preferred_term: Feeding difficulties in infancy
term:
id: HP:0008872
label: Feeding difficulties in infancy
description: >-
Many infants experience feeding difficulties and failure to thrive in early life.
frequency: FREQUENT
evidence:
- reference: PMID:17222357
reference_title: "Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Other associated features are webbed neck, chest deformity, mild
intellectual deficit, cryptorchidism, poor feeding in infancy, bleeding
tendency and lymphatic dysplasias.
explanation: >-
Supports poor feeding in infancy as a common early-life manifestation in
Noonan syndrome.
genetic:
- name: PTPN11
gene_term:
preferred_term: PTPN11
term:
id: hgnc:9644
label: PTPN11
association: Pathogenic Variants
frequency: VERY_FREQUENT
notes: >-
Most commonly mutated gene, accounting for approximately 50-60% of cases.
Encodes SHP2 phosphatase. Gain-of-function mutations destabilize the
autoinhibited conformation leading to increased phosphatase activity.
Associated with pulmonary stenosis but lower HCM risk.
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Mutations were found in 54 of 119 (45%) unrelated individuals with sporadic
or familial NS."
explanation: Confirms PTPN11 mutations account for approximately half of
Noonan syndrome cases.
- name: SOS1
gene_term:
preferred_term: SOS1
term:
id: hgnc:11187
label: SOS1
association: Pathogenic Variants
frequency: OCCASIONAL
notes: >-
Accounts for 10-20% of PTPN11-negative cases (approximately 10% overall).
Encodes a RAS guanine nucleotide exchange factor. Gain-of-function mutations
enhance RAS-GTP loading.
evidence:
- reference: PMID:17143285
reference_title: "Germline gain-of-function mutations in SOS1 cause Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "We identified missense mutations in SOS1, which encodes an essential
RAS guanine nucleotide-exchange factor (RAS-GEF), in approximately 20% of cases
of Noonan syndrome without PTPN11 mutation."
explanation: SOS1 mutations are a significant cause of PTPN11-negative
Noonan syndrome.
- name: RAF1
gene_term:
preferred_term: RAF1
term:
id: hgnc:9829
label: RAF1
association: Pathogenic Variants
frequency: OCCASIONAL
notes: >-
Accounts for 3-17% of cases. Strongly associated with hypertrophic cardiomyopathy
(up to 95% of patients with RAF1 mutations have HCM).
evidence:
- reference: PMID:17603483
reference_title: "Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "18 of 231 individuals with Noonan syndrome without known mutations (corresponding
to 3% of all affected individuals)...have missense mutations in RAF1"
explanation: RAF1 mutations account for approximately 3% of Noonan syndrome.
- name: RIT1
gene_term:
preferred_term: RIT1
term:
id: hgnc:10023
label: RIT1
association: Pathogenic Variants
frequency: OCCASIONAL
notes: >-
Accounts for approximately 5-10% of cases. Associated with high incidence of
hypertrophic cardiomyopathy (70% of mutation-positive individuals).
evidence:
- reference: PMID:23791108
reference_title: "Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "we identified a total of nine missense, nonsynonymous mutations in RIT1...in
17 of 180 individuals (9%) with Noonan syndrome"
explanation: RIT1 mutations account for approximately 9% of cases without
mutations in other known genes.
- name: KRAS
gene_term:
preferred_term: KRAS
term:
id: hgnc:6407
label: KRAS
association: Pathogenic Variants
frequency: VERY_RARE
notes: >-
Rare cause, less than 2% of cases. Germline activating variants often cause
more severe phenotype with significant neurodevelopmental involvement.
evidence:
- reference: PMID:17143285
reference_title: "Germline gain-of-function mutations in SOS1 cause Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "KRAS mutations account for <5% of cases of Noonan syndrome"
explanation: KRAS mutations are a rare cause of Noonan syndrome.
- name: LZTR1
gene_term:
preferred_term: LZTR1
term:
id: hgnc:6742
label: LZTR1
association: Pathogenic Variants
frequency: OCCASIONAL
notes: >-
Can cause both autosomal dominant and autosomal recessive forms.
Acts as a CUL3 adaptor controlling RAS proteostasis through ubiquitination.
Dominant mutations act in a dominant-negative manner.
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Final diagnoses included 15 individuals with Noonan syndrome...one each
in LZTR1, A2ML1, and MRAS...
explanation: >-
Supports LZTR1 as a clinically observed Noonan syndrome genotype in
contemporary molecular cohorts.
- name: MRAS
gene_term:
preferred_term: MRAS
term:
id: hgnc:7227
label: MRAS
association: Pathogenic Variants
frequency: RARE
notes: >-
Emerging Noonan syndrome gene associated with variable expressivity, including
adult-onset hypertrophic cardiomyopathy in recent reports.
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Final diagnoses included 15 individuals with Noonan syndrome...one each
in LZTR1, A2ML1, and MRAS...
explanation: >-
Supports MRAS as a rare but clinically confirmed contributor to Noonan syndrome.
- reference: PMID:41517739
reference_title: "Novel characterization of MRAS mutation-associated Noonan syndrome: Mild adult-onset hypertrophic cardiomyopathy combined with infective endocarditis: A case report."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Whole-exome sequencing identified a heterozygous MRAS c.203C>T
(p.Thr68Ile) mutation...supporting the diagnosis of MRAS-associated
Noonan syndrome.
explanation: >-
Case-level molecular confirmation supports pathogenic MRAS-associated
Noonan syndrome with cardiac involvement.
inheritance:
- name: Autosomal Dominant
description: Most cases follow autosomal dominant inheritance with variable
expressivity. Approximately 30-75% of cases are de novo mutations.
evidence:
- reference: PMID:11992261
reference_title: "PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Mutations were found in 54 of 119 (45%) unrelated individuals with
sporadic or familial NS.
explanation: >-
Supports autosomal dominant inheritance with both familial transmission
and de novo/sporadic occurrence.
- name: Autosomal Recessive
description: >-
A subset of Noonan syndrome is inherited in an autosomal recessive manner,
particularly in LZTR1-associated disease.
evidence:
- reference: PMID:20301303
reference_title: "Noonan Syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
NS caused by pathogenic variants in LZTR1 can be inherited in either an
autosomal dominant or an autosomal recessive manner.
explanation: >-
Supports autosomal recessive inheritance in LZTR1-associated Noonan
syndrome.
diagnosis:
- name: Molecular genetic testing
description: >-
Multigene RASopathy molecular testing is central to confirming Noonan
syndrome and separating it from phenotypically overlapping RASopathies.
diagnosis_term:
preferred_term: molecular genetic testing
term:
id: MAXO:0000533
label: molecular genetic testing
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
This retrospective study analyzed...individuals diagnosed with Noonan
syndrome and related disorders previously submitted to diagnostic molecular
analysis through next-generation sequencing techniques.
explanation: >-
Supports molecular testing as a practical diagnostic discriminator in
suspected Noonan-spectrum disorders.
- name: Clinical whole-exome sequencing
description: >-
Whole-exome sequencing can establish diagnosis in atypical or less common
genotypes, including MRAS-associated Noonan syndrome.
diagnosis_term:
preferred_term: clinical whole-exome sequencing
term:
id: MAXO:0009004
label: clinical whole-exome sequencing
evidence:
- reference: PMID:41517739
reference_title: "Novel characterization of MRAS mutation-associated Noonan syndrome: Mild adult-onset hypertrophic cardiomyopathy combined with infective endocarditis: A case report."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Whole-exome sequencing identified a heterozygous MRAS c.203C>T
(p.Thr68Ile) mutation...supporting the diagnosis of MRAS-associated
Noonan syndrome.
explanation: >-
Demonstrates diagnostic utility of exome sequencing in genetically
heterogeneous Noonan syndrome.
- name: Echocardiography
description: >-
Echocardiography is a key diagnostic assessment for structural defects and
hypertrophic cardiomyopathy in Noonan syndrome.
diagnosis_term:
preferred_term: echocardiography
term:
id: MAXO:0010203
label: echocardiography
evidence:
- reference: PMID:41517739
reference_title: "Novel characterization of MRAS mutation-associated Noonan syndrome: Mild adult-onset hypertrophic cardiomyopathy combined with infective endocarditis: A case report."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Echocardiography demonstrated obstructive hypertrophic cardiomyopathy
with vegetation located in the left ventricular outflow tract.
explanation: >-
Supports echocardiography as an essential modality for defining Noonan
syndrome cardiac phenotype and complications.
differential_diagnoses:
- name: Cardiofaciocutaneous syndrome
disease_term:
preferred_term: cardiofaciocutaneous syndrome
term:
id: MONDO:0015280
label: cardiofaciocutaneous syndrome
description: >-
Cardiofaciocutaneous syndrome is a RASopathy with substantial overlap in
growth, dysmorphology, neurodevelopmental, and cardiac findings.
distinguishing_features:
- More often associated with BRAF-pathway variants than classic PTPN11-predominant Noonan syndrome.
- Ectodermal/skin and hair abnormalities are often more prominent in CFC.
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
RASopathies are a heterogeneous group...presenting with overlapping
features... Final diagnoses included...two with
cardiofaciocutaneous syndrome (BRAF)...
explanation: >-
Demonstrates overlap requiring differential diagnosis, with BRAF genotype
pattern helping separate CFC from classic Noonan syndrome.
- name: Costello syndrome
disease_term:
preferred_term: Costello syndrome
term:
id: MONDO:0009026
label: Costello syndrome
description: >-
Costello syndrome is an overlapping RASopathy that can resemble Noonan
syndrome in early referral contexts.
distinguishing_features:
- HRAS pathogenic variants support Costello syndrome rather than classic Noonan syndrome.
- Relative burden of coarse facies, deep palmar/plantar creases, and tumor predisposition favors Costello syndrome.
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Final diagnoses included...one each with...Costello syndrome (HRAS)...
explanation: >-
Supports Costello syndrome as a practical molecular differential in
suspected Noonan-spectrum patients.
- name: Neurofibromatosis type 1
disease_term:
preferred_term: neurofibromatosis type 1
term:
id: MONDO:0018975
label: neurofibromatosis type 1
description: >-
NF1-related phenotypes can overlap with Noonan syndrome (including
Neurofibromatosis-Noonan presentations) and require molecular distinction.
distinguishing_features:
- NF1 pathogenic variants and neurofibromatosis features (e.g., neurofibromas, cafe-au-lait patterning) support NF1-spectrum diagnosis.
- Shared RAS-MAPK dysregulation can create overlapping craniofacial and growth findings.
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Final diagnoses included...two with Neurofibromatosis-Noonan (NF1)...
explanation: >-
Confirms clinically relevant NS vs NF1-overlap differential diagnosis in
molecularly evaluated RASopathy cohorts.
- name: Noonan syndrome with multiple lentigines
disease_term:
preferred_term: Noonan syndrome with multiple lentigines
term:
id: MONDO:0007893
label: Noonan syndrome with multiple lentigines
description: >-
Noonan syndrome with multiple lentigines shares core Noonan features but is
separated by pigmentation pattern and genotype-phenotype context.
distinguishing_features:
- Diffuse lentigines and characteristic pigmentary findings support NSML over classic Noonan syndrome.
- PTPN11 variant context and clinical trajectory help separate NSML from other Noonan subtypes.
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
two with Noonan syndrome with multiple lentigines (both with variants in PTPN11)
explanation: >-
Supports NSML as a frequent practical differential diagnosis in
Noonan-spectrum genomic evaluation.
treatments:
- name: Growth Hormone Therapy
description: >-
Recombinant human growth hormone (rhGH) is FDA-approved for treatment of short
stature
in Noonan syndrome. Can improve final adult height by approximately 1 standard
deviation.
treatment_term:
preferred_term: human growth hormone replacement therapy
term:
id: MAXO:0000780
label: human growth hormone replacement therapy
target_phenotypes:
- preferred_term: Short stature
term:
id: HP:0004322
label: Short stature
evidence:
- reference: PMID:41577878
reference_title: "Noonan syndrome spectrum disorders in real life: patient characteristics and response to growth hormone therapy in a genetically defined single-country multicenter cohort."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
GH therapy was associated with an increase in height SDS from -2.92 to
-1.97 (median) following 5 years, and to -1.68 in those with final height.
explanation: >-
Large multicenter cohort evidence supports growth hormone therapy for
short stature in Noonan syndrome spectrum disorders.
- name: Cardiac Surgical Intervention
description: >-
Balloon valvuloplasty or surgical valvotomy for pulmonary valve stenosis;
septal myectomy or alcohol ablation for severe hypertrophic cardiomyopathy.
treatment_term:
preferred_term: surgical procedure
term:
id: MAXO:0000004
label: surgical procedure
target_phenotypes:
- preferred_term: Pulmonic stenosis
term:
id: HP:0001642
label: Pulmonic stenosis
- preferred_term: Hypertrophic cardiomyopathy
term:
id: HP:0001639
label: Hypertrophic cardiomyopathy
evidence:
- reference: PMID:41718520
reference_title: "Atrial Septal Defect Surgical Closure Following Trametinib Utilization in Noonan Syndrome-Associated Hypertrophic Cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The patient was treated with trametinib to improve cardiac hypertrophy and
then underwent successful surgical closure of the atrial septal defect.
explanation: >-
Demonstrates feasibility of staged surgical management for structural
heart disease in severe Noonan-associated cardiomyopathy.
- name: MEK Inhibitor Therapy
description: >-
Trametinib (MEK1/2 inhibitor) has shown promising results in case reports
for treatment-refractory hypertrophic cardiomyopathy and lymphatic complications.
MEK inhibition can reverse cardiomyocyte hypertrophy in animal models.
treatment_term:
preferred_term: pharmacotherapy
term:
id: MAXO:0000058
label: pharmacotherapy
target_phenotypes:
- preferred_term: Hypertrophic cardiomyopathy
term:
id: HP:0001639
label: Hypertrophic cardiomyopathy
- preferred_term: Lymphedema
term:
id: HP:0001004
label: Lymphedema
notes: >-
Emerging therapy based on case reports; controlled trials are needed.
Typical pediatric dosing 0.01-0.025 mg/kg/day.
evidence:
- reference: PMID:41718520
reference_title: "Atrial Septal Defect Surgical Closure Following Trametinib Utilization in Noonan Syndrome-Associated Hypertrophic Cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Trametinib, an MEK inhibitor that attenuates abnormal signaling in the
RAS/MAPK pathway, has been shown to improve NS-HCM outcomes.
explanation: >-
Supports MEK inhibition as a targeted strategy for severe
Noonan-associated hypertrophic cardiomyopathy in early clinical use.
- name: Early Intervention Services
description: >-
Developmental support including speech therapy, physical therapy, occupational
therapy, and special education services for developmental delays and learning
disabilities.
treatment_term:
preferred_term: early intervention services
term:
id: MAXO:0009101
label: early intervention services
target_phenotypes:
- preferred_term: Global developmental delay
term:
id: HP:0001263
label: Global developmental delay
evidence:
- reference: PMID:20301303
reference_title: "Noonan Syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Developmental disabilities are addressed by early intervention programs
and individualized education strategies.
explanation: >-
GeneReviews supports early intervention services as standard management
for developmental disability in Noonan syndrome.
- name: Speech Therapy
description: >-
Speech and language therapy for articulation difficulties and language delays.
treatment_term:
preferred_term: speech therapy
term:
id: MAXO:0000930
label: speech therapy
target_phenotypes:
- preferred_term: Global developmental delay
term:
id: HP:0001263
label: Global developmental delay
evidence:
- reference: PMID:17222357
reference_title: "Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Physiotherapy and/or speech therapy should be offered if indicated.
explanation: >-
Supports speech therapy as recommended supportive care in Noonan syndrome
management.
- name: Physical Therapy
description: >-
Physical therapy to address motor delays and hypotonia common in Noonan syndrome.
treatment_term:
preferred_term: physical therapy
term:
id: MAXO:0000011
label: physical therapy
target_phenotypes:
- preferred_term: Global developmental delay
term:
id: HP:0001263
label: Global developmental delay
evidence:
- reference: PMID:17222357
reference_title: "Noonan syndrome."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Physiotherapy and/or speech therapy should be offered if indicated.
explanation: >-
Supports physiotherapy (physical therapy) for motor/developmental support
in Noonan syndrome.
definitions:
- name: Noonan syndrome molecular-clinical case definition
definition_type: CASE_DEFINITION
description: >-
Noonan syndrome is defined as a RASopathy with compatible craniofacial,
growth, developmental, and cardiovascular phenotype supported by molecular
evidence in a causative RAS-MAPK pathway gene.
scope: Clinical genetics and pediatric cardiology evaluation for suspected RASopathy
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
RASopathies are a heterogeneous group of conditions of the
RAS/mitogen-activated protein kinase pathway presenting with overlapping
features such as growth deficiency, neurodevelopmental disorders, cardiac
defects, craniofacial dysmorphisms, cutaneous and ocular abnormalities,
and increased cancer risk.
explanation: >-
Cohort evidence supports a combined phenotype-plus-genotype approach for
Noonan syndrome case definition in modern practice.
classifications:
harrisons_chapter:
- classification_value: hereditary disease
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
RASopathies are a heterogeneous group of conditions of the
RAS/mitogen-activated protein kinase pathway presenting with
overlapping features such as growth deficiency, neurodevelopmental
disorders, cardiac defects, craniofacial dysmorphisms, cutaneous and
ocular abnormalities, and increased cancer risk.
explanation: >-
Supports Noonan syndrome as an inherited RAS-MAPK pathway disorder
within hereditary disease classification.
- classification_value: cardiovascular disorder
evidence:
- reference: PMID:41675685
reference_title: "Genotype-Phenotype Analysis and New Clinical Findings in a Series of 24 Patients Presenting with Noonan Syndrome and Related Disorders."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The main reason for referral was diagnostic assessment due to a
combination of dysmorphic features (24/24; 100%), growth deficiency
(18/24; 75%), neurodevelopmental disorders (15/24; 62.5%), and/or heart
disease (13/24; 54.1%).
explanation: >-
Supports cardiovascular disorder classification based on substantial
burden of congenital and structural heart disease in Noonan-spectrum
patients.
experimental_models:
- name: Noonan syndrome cortical organoid model
description: >-
Human Noonan syndrome induced pluripotent stem cell-derived cortical organoids
with matched corrected controls used to study cortical layer specification and
neuronal connectivity phenotypes.
experimental_model_type: ORGANOID
namo_type: namo:Organoid
organism:
preferred_term: human
term:
id: NCBITaxon:9606
label: Homo sapiens
tissue_term:
preferred_term: cerebral cortex
term:
id: UBERON:0000956
label: cerebral cortex
conditions:
- Noonan syndrome
- isogenic corrected control
cell_source: Noonan syndrome induced pluripotent stem cells differentiated into cortical organoids
culture_system: Three-dimensional cortical organoid time-course culture
publication: PMID:36430334
findings:
- statement: Noonan cortical organoids show abnormal excitatory-neuron composition, cortical-layer identity, and reduced synaptic connectivity
evidence:
- reference: PMID:36430334
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Here, we report that cortical organoids (NS-COs) derived from NS-induced pluripotent stem cells (iPSCs) exhibit developmental abnormalities, especially in excitatory neurons (ENs)."
explanation: Establishes that NS-derived cortical organoids capture disease-relevant neurodevelopmental abnormalities.
- reference: PMID:36430334
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Collectively, our findings suggest that perturbed cortical layer identity and impeded neuronal connectivity contribute to the neurological manifestations of NS."
explanation: Supports mechanistic alignment of the organoid model with neurological manifestations in Noonan syndrome.
evidence:
- reference: PMID:36430334
supports: SUPPORT
evidence_source: IN_VITRO
snippet: "Here, we report that cortical organoids (NS-COs) derived from NS-induced pluripotent stem cells (iPSCs) exhibit developmental abnormalities, especially in excitatory neurons (ENs)."
explanation: Supports a first-class cortical organoid model for Noonan syndrome.
notes: >-
Replaces the prior implicit reliance on GEO-only cross-reference with a
direct disease-model anchor publication.
- name: Noonan syndrome iPSC-cardiomyocyte model
description: >-
Patient-derived Noonan syndrome induced pluripotent stem cell cardiomyocytes
modeling childhood-onset cardiomyopathy and RAF1/PTPN11-driven transcriptional
dysregulation with matched corrected or comparator controls.
experimental_model_type: IPSC_DERIVED_MODEL
namo_type: namo:TwoDCellCulture
organism:
preferred_term: human
term:
id: NCBITaxon:9606
label: Homo sapiens
tissue_term:
preferred_term: heart
term:
id: UBERON:0000948
label: heart
cell_types:
- preferred_term: cardiomyocyte
term:
id: CL:0000746
label: cardiac muscle cell
conditions:
- Noonan syndrome-associated cardiomyopathy
- RAF1 S257L/+ Noonan syndrome
- PTPN11N308S/+ Noonan syndrome
cell_source: Patient-derived induced pluripotent stem cell-derived cardiomyocytes with isogenic or non-diseased controls
culture_system: Two-dimensional iPSC-cardiomyocyte differentiation with transcriptomic and pathway-perturbation readouts
publication: PMID:34988410
findings:
- statement: Noonan iPSC-cardiomyocytes capture cardiomyopathy-linked cell-cycle and signaling defects in a genotype-resolved human cardiac model
evidence:
- reference: PMID:34988410
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Here, through analysis of sarcomeric myosin conformational states,
histopathology, and gene expression in left ventricular myocardial tissue
from NS-CM, HCM, and normal hearts complemented with disease modeling in
cardiomyocytes differentiated from patient-derived PTPN11 N308S/+
induced pluripotent stem cells, we demonstrate distinct disease
phenotypes between NS-CM and HCM and uncover cell cycle defects as a
potential driver of NS-CM.
explanation: Supports patient-derived iPSC-cardiomyocytes as a disease-relevant Noonan cardiomyopathy model.
- reference: PMID:31163979
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
METHODS: We used patient-derived RAF1S257L/+ and CRISPR-Cas9-generated
isogenic control inducible pluripotent stem cell (iPSC)-derived
cardiomyocytes to model NS RAF1-associated HCM and to further delineate
the molecular mechanisms underlying the disease.
explanation: Supports mutation-specific mechanistic modeling in Noonan iPSC-cardiomyocytes.
evidence:
- reference: PMID:34988410
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Here, through analysis of sarcomeric myosin conformational states,
histopathology, and gene expression in left ventricular myocardial tissue
from NS-CM, HCM, and normal hearts complemented with disease modeling in
cardiomyocytes differentiated from patient-derived PTPN11 N308S/+
induced pluripotent stem cells, we demonstrate distinct disease
phenotypes between NS-CM and HCM and uncover cell cycle defects as a
potential driver of NS-CM.
explanation: Supports this as a first-class Noonan iPSC-cardiomyocyte model entry.
notes: >-
Groups the two strongest existing dismech cardiac experimental-model resources under a single
disease-level experimental-model concept.
datasets:
- accession: geo:GSE213798
title: Aberrant cortical layer development of brain organoids developed from Noonan syndrome-iPSCs
description: >-
Human induced pluripotent stem cell-derived cortical organoid transcriptomic
resource profiling neurodevelopmental abnormalities in Noonan syndrome and
matched isogenic corrected controls across developmental time points.
organism:
preferred_term: human
term:
id: NCBITaxon:9606
label: Homo sapiens
data_type: SINGLE_CELL_RNA_SEQ
sample_count: 9
conditions:
- Noonan syndrome iPSC-derived cortical organoids
- isogenic corrected control cortical organoids
platform: GPL24676
publication: GEO:GSE213798
evidence:
- reference: GEO:GSE213798
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
single-cell transcriptomic analysis represented increment of EN population
and overexpression of cortical layer markers in NS-COs.
explanation: >-
Provides disease-relevant human neurodevelopmental transcriptomic evidence
for cortical-layer and neuronal-connectivity abnormalities in Noonan syndrome.
- accession: geo:GSE188238
title: Cell cycle defects underlie childhood-onset cardiomyopathy associated with Noonan syndrome
description: >-
Bulk transcriptomic dataset integrating left ventricular myocardial tissue
and patient-derived PTPN11N308S/+ iPSC-cardiomyocyte modeling to define
mechanisms of Noonan syndrome-associated childhood cardiomyopathy.
organism:
preferred_term: human
term:
id: NCBITaxon:9606
label: Homo sapiens
data_type: BULK_RNA_SEQ
sample_count: 11
conditions:
- Noonan syndrome-associated cardiomyopathy
- sarcomeric hypertrophic cardiomyopathy comparator
- non-diseased cardiac control
platform: GPL20301
publication: PMID:34988410
evidence:
- reference: GEO:GSE188238
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
gene expression in left ventricular myocardial tissue from NS-CM, HCM and
normal hearts
explanation: >-
Supports human myocardial tissue evidence for transcriptomic distinctions
between Noonan cardiomyopathy and sarcomeric HCM.
- reference: GEO:GSE188238
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
complemented with disease modeling in cardiomyocytes differentiated from
patient-derived PTPN11N308S/+ induced pluripotent stem cells
explanation: >-
Supports complementary in vitro iPSC-cardiomyocyte modeling of Noonan
cardiomyopathy mechanisms.
- accession: geo:GSE131069
title: Differential gene expression in human RAF1 S257L/+ and isogenic corrected iPSC-derived cardiomyocytes
description: >-
Bulk RNA-seq dataset from human RAF1 S257L/+ Noonan syndrome iPSC-derived
cardiomyocytes and isogenic corrected controls, including pathway-perturbation
conditions targeting MEK/ERK signaling.
organism:
preferred_term: human
term:
id: NCBITaxon:9606
label: Homo sapiens
data_type: BULK_RNA_SEQ
sample_count: 12
conditions:
- RAF1 S257L/+ Noonan syndrome iPSC-derived cardiomyocytes
- isogenic corrected control cardiomyocytes
- MEK/ERK pathway inhibition perturbation
platform: GPL23934
publication: PMID:31163979
evidence:
- reference: GEO:GSE131069
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Hence, to gain insights into the transcriptional alterations induced by
the NS-associated RAF1S257L/+ mutation in human iPSC-derived
cardiomyocytes, we performed quantitative transcriptome profiling by
RNA-sequencing.
explanation: >-
Supports a mutation-specific human cardiomyocyte transcriptomic resource
linking RAF1-driven signaling dysregulation to Noonan cardiac phenotypes.
references:
- reference: DOI:10.1159/000545410
title: Genotype-Phenotype Analysis and New Clinical Findings in a Series of
24 Patients Presenting with Noonan Syndrome and Related Disorders
findings: []
- reference: DOI:10.1007/s00431-026-06764-2
title: Noonan syndrome spectrum disorders in real life patient characteristics
and response to growth hormone therapy in a genetically defined single-country
multicenter cohort
findings: []
- reference: DOI:10.1002/ajmga.70060
title: 'Neuropathic Pain and Enlarged Nerves in Adult Noonan Syndrome and
Noonan Syndrome With Multiple Lentigines: Health-Related Quality of Life
and Neurologic Symptoms'
findings: []
- reference: DOI:10.1097/MD.0000000000046340
title: 'Novel characterization of MRAS mutation-associated Noonan syndrome:
Mild adult-onset hypertrophic cardiomyopathy combined with infective
endocarditis: A case report'
findings: []
- reference: DOI:10.1016/j.jaccas.2026.107006
title: Atrial Septal Defect Surgical Closure Following Trametinib Utilization
in Noonan Syndrome-Associated Hypertrophic Cardiomyopathy
findings: []
- reference: DOI:10.1007/s00431-023-05263-y
title: Novel therapeutic perspectives in Noonan syndrome and RASopathies
findings: []
- reference: DOI:10.1007/s10557-022-07324-0
title: An Assessment of the Therapeutic Landscape for the Treatment of Heart
Disease in the RASopathies
findings: []
- reference: DOI:10.1016/j.jacc.2019.01.066
title: Hypertrophic Cardiomyopathy in Noonan Syndrome
Treated by MEK-Inhibition
findings: []
- reference: DOI:10.1126/sciadv.adf4766
title: RAS-dependent RAF-MAPK hyperactivation by pathogenic RIT1 is a
therapeutic target in Noonan syndrome–associated cardiac hypertrophy
findings: []
- reference: DOI:10.1158/1078-0432.ccr-24-1611
title: Update on Pediatric Cancer Surveillance Recommendations for Patients
with Neurofibromatosis Type 1, Noonan Syndrome, CBL Syndrome, Costello
Syndrome, and Related RASopathies
findings: []
- reference: DOI:10.1172/jci.insight.182382
title: Dysregulation of RAS proteostasis by autosomal-dominant LZTR1 mutation
induces Noonan syndrome–like phenotypes in mice
findings: []
- reference: DOI:10.1172/jci172839
title: 'Central conducting lymphatic anomaly: from bench to bedside'
findings: []
- reference: DOI:10.3389/fped.2025.1475143
title: Trametinib as a targeted treatment in cardiac and lymphatic
presentations of Noonan syndrome
findings: []
- reference: DOI:10.3390/children11111342
title: 'Refractory Chylothorax and Ventricular Hypertrophy Treated with Trametinib
in a Patient with Noonan Syndrome: 18-Month Follow-Up'
findings: []
- reference: DOI:10.3390/genes15081015
title: Cardiac Phenotype and Gene Mutations in RASopathies
findings: []
- reference: DOI:10.3390/ijms26083515
title: 'Update on the Clinical and Molecular Characterization of Noonan Syndrome
and Other RASopathies: A Retrospective Study and Systematic Review'
findings: []
- reference: DOI:10.3390/life14060731
title: 'Exploring New Drug Repurposing Opportunities for MEK Inhibitors in RASopathies:
A Comprehensive Review of Safety, Efficacy, and Future Perspectives of Trametinib
and Selumetinib'
findings: []