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0
Mappings
0
Definitions
0
Inheritance
5
Pathophysiology
1
Histopathology
6
Phenotypes
5
Pathograph
4
Genes
4
Treatments
0
Subtypes
0
Differentials
0
Datasets
0
Trials
0
Models
14
References
1
Deep Research
🏷

Classifications

Harrison's Chapter
cancer solid tumor
ICD-O Morphology
Adenocarcinoma

Pathophysiology

5
IDH1/2 Neomorphic Mutation
IDH1 R132 or IDH2 R140/R172 mutations are neomorphic, conferring a new enzymatic function. Instead of converting isocitrate to alpha-ketoglutarate (aKG), mutant IDH converts aKG to the oncometabolite D-2-hydroxyglutarate (2-HG). 2-HG accumulates to millimolar concentrations in tumor cells.
cholangiocyte link
isocitrate dehydrogenase (NADP+) activity link ⚠ ABNORMAL
intrahepatic bile duct link
Show evidence (1 reference)
PMID:25536104 PARTIAL
"Commonly occurring GAs in intrahepatic CCA were TP53 (35%), KRAS (24%), ARID1A (20%), IDH1 (18%), MCL1 (16%) and PBRM1 (11%)."
Supports the presence of IDH1 mutations in intrahepatic cholangiocarcinoma.
2-HG Accumulation and Dioxygenase Inhibition
2-HG is structurally similar to alpha-ketoglutarate and competitively inhibits aKG-dependent dioxygenases, including TET2 (DNA demethylation), JMJD histone demethylases, and prolyl hydroxylases. This leads to widespread epigenetic and metabolic dysregulation.
Show evidence (1 reference)
PMID:24569570 SUPPORT
"These mutations result in elevated levels of an oncometabolite, 2-hydroxyglutarate, which is associated with higher DNA CpG methylation and altered histone methylation that accompany a block in cellular differentiation."
Abstract links IDH mutations to elevated 2-hydroxyglutarate and epigenetic effects.
Epigenetic Dysregulation and DNA Hypermethylation
2-HG inhibition of TET2 blocks conversion of 5-methylcytosine to 5-hydroxymethylcytosine, causing DNA hypermethylation. This CpG island methylator phenotype (CIMP) silences tumor suppressor genes and differentiation programs, contributing to the block in cellular differentiation characteristic of IDH-mutant tumors.
DNA methylation link ↑ INCREASED
Histone Methylation Alterations
2-HG inhibits Jumonji domain-containing histone demethylases, leading to accumulation of repressive histone methylation marks (H3K9me3, H3K27me3). This contributes to transcriptional silencing and the differentiation block.
Differentiation Block and Tumor Growth
Combined epigenetic alterations block normal cholangiocyte differentiation, maintaining cells in a progenitor-like state with proliferative capacity. This promotes tumor growth while the cells retain sensitivity to IDH inhibition, which can restore differentiation programs.
cell population proliferation link ↑ INCREASED

Histopathology

1
Well Differentiated Cholangiocarcinoma VERY_FREQUENT
Most cholangiocarcinomas are well differentiated.
Show evidence (1 reference)
PMID:12901270 PARTIAL
"Histologically, 90-95% of CC are well differentiated"
Abstract notes that the majority of cholangiocarcinomas are well differentiated.

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence and cross-linked metadata.
Pathograph: causal mechanism network for IDH-Mutant Cholangiocarcinoma Interactive directed graph showing how pathophysiology mechanisms, phenotypes, genetic factors and variants, experimental models, environmental triggers, and treatments relate through causal and linked edges.

Phenotypes

6
Digestive 3
Hepatomegaly FREQUENT Hepatomegaly (HP:0002240)
Jaundice FREQUENT Jaundice (HP:0000952)
Nausea OCCASIONAL Nausea (HP:0002018)
Constitutional 2
Abdominal Pain FREQUENT Abdominal pain (HP:0002027)
Fatigue FREQUENT Fatigue (HP:0012378)
Growth 1
Weight Loss FREQUENT Weight loss (HP:0001824)
🧬

Genetic Associations

4
IDH1 (Somatic Neomorphic Mutation)
Show evidence (1 reference)
PMID:24569570 PARTIAL
"Hotspot mutations in IDH isoforms 1 or 2 occur in approximately 15% of intrahepatic cholangiocarcinomas."
Abstract reports IDH1/2 hotspot mutations in intrahepatic cholangiocarcinoma.
IDH2 (Somatic Neomorphic Mutation)
Show evidence (1 reference)
PMID:24569570 PARTIAL
"Hotspot mutations in IDH isoforms 1 or 2 occur in approximately 15% of intrahepatic cholangiocarcinomas."
Abstract reports IDH1/2 hotspot mutations in intrahepatic cholangiocarcinoma.
ARID1A (Co-occurring Mutations)
BAP1 (Co-occurring Mutations)
💊

Treatments

4
Ivosidenib
Action: targeted therapy Ontology label: Targeted Therapy NCIT:C93352
Agent: ivosidenib
Selective small molecule inhibitor of mutant IDH1 approved for previously treated IDH1-mutant cholangiocarcinoma. ClarIDHy trial demonstrated improved progression-free survival compared to placebo (2.7 vs 1.4 months) with manageable toxicity and maintenance of quality of life.
Gemcitabine plus Cisplatin
Action: chemotherapy MAXO:0000647
First-line standard chemotherapy for advanced cholangiocarcinoma regardless of IDH status. ABC-02 trial established this combination as standard of care. IDH-mutant tumors may have similar or slightly better chemotherapy response.
Gemcitabine plus Cisplatin plus Durvalumab
Action: immunotherapy Ontology label: Immunotherapy NCIT:C15262
Agent: durvalumab cisplatin
Addition of anti-PD-L1 durvalumab to gemcitabine/cisplatin improves survival in first-line treatment of biliary tract cancers (TOPAZ-1 trial). Now standard first-line treatment for advanced cholangiocarcinoma.
Surgical Resection
Action: surgical procedure MAXO:0000004
Surgery offers the only chance for cure in cholangiocarcinoma. Hepatectomy with adequate margins for intrahepatic tumors. Limited by advanced stage at presentation in most patients.
🔬

Biochemical Markers

3
Serum 2-HG
CA 19-9
Liver Function Tests
{ }

Source YAML

click to show
name: IDH-Mutant Cholangiocarcinoma
creation_date: '2026-01-26T02:55:13Z'
updated_date: '2026-04-22T20:13:21Z'
description: >-
  IDH-mutant cholangiocarcinoma is a molecularly defined subtype of intrahepatic cholangiocarcinoma
  characterized by mutations in isocitrate dehydrogenase 1 or 2 (IDH1/2). IDH mutations
  occur in
  approximately 15-20% of intrahepatic cholangiocarcinomas and cause production of
  the oncometabolite
  2-hydroxyglutarate (2-HG), which inhibits alpha-ketoglutarate-dependent dioxygenases
  and leads to
  widespread epigenetic dysregulation. IDH-mutant cholangiocarcinomas have distinct
  clinical features
  including younger age at onset and better prognosis compared to IDH wild-type tumors.
  Ivosidenib,
  a selective IDH1 inhibitor, demonstrated improved progression-free survival in the
  ClarIDHy trial,
  establishing it as standard therapy for IDH1-mutant cholangiocarcinoma.
categories:
- Gastrointestinal Cancer
- Hepatobiliary Cancer
- Molecularly Defined Cancer
parents:
- intrahepatic cholangiocarcinoma
pathophysiology:
- name: IDH1/2 Neomorphic Mutation
  description: >-
    IDH1 R132 or IDH2 R140/R172 mutations are neomorphic, conferring a new enzymatic
    function.
    Instead of converting isocitrate to alpha-ketoglutarate (aKG), mutant IDH converts
    aKG
    to the oncometabolite D-2-hydroxyglutarate (2-HG). 2-HG accumulates to millimolar
    concentrations in tumor cells.
  evidence:
  - reference: PMID:25536104
    reference_title: "Mutation profiling in cholangiocarcinoma: prognostic and therapeutic implications."
    supports: PARTIAL
    snippet: "Commonly occurring GAs in intrahepatic CCA were TP53 (35%), KRAS (24%), ARID1A (20%), IDH1 (18%), MCL1 (16%) and PBRM1 (11%)."
    explanation: "Supports the presence of IDH1 mutations in intrahepatic cholangiocarcinoma."
  cell_types:
  - preferred_term: cholangiocyte
    term:
      id: CL:1000488
      label: cholangiocyte
  molecular_functions:
  - preferred_term: isocitrate dehydrogenase (NADP+) activity
    modifier: ABNORMAL
    term:
      id: GO:0004450
      label: isocitrate dehydrogenase (NADP+) activity
  locations:
  - preferred_term: intrahepatic bile duct
    term:
      id: UBERON:0003704
      label: intrahepatic bile duct
  downstream:
  - target: 2-HG Accumulation and Dioxygenase Inhibition
    description: Oncometabolite production inhibits aKG-dependent enzymes
- name: 2-HG Accumulation and Dioxygenase Inhibition
  description: >-
    2-HG is structurally similar to alpha-ketoglutarate and competitively inhibits
    aKG-dependent dioxygenases, including TET2 (DNA demethylation), JMJD histone
    demethylases, and prolyl hydroxylases. This leads to widespread epigenetic and
    metabolic dysregulation.
  evidence:
  - reference: PMID:24569570
    reference_title: "Mutations of isocitrate dehydrogenase 1 and 2 in intrahepatic cholangiocarcinoma."
    supports: SUPPORT
    snippet: "These mutations result in elevated levels of an oncometabolite, 2-hydroxyglutarate, which is associated with higher DNA CpG methylation and altered histone methylation that accompany a block in cellular differentiation."
    explanation: "Abstract links IDH mutations to elevated 2-hydroxyglutarate and epigenetic effects."
  downstream:
  - target: Epigenetic Dysregulation and DNA Hypermethylation
    description: TET2 inhibition blocks DNA demethylation
  - target: Histone Methylation Alterations
    description: JMJD inhibition alters histone methylation landscape
- name: Epigenetic Dysregulation and DNA Hypermethylation
  description: >-
    2-HG inhibition of TET2 blocks conversion of 5-methylcytosine to 5-hydroxymethylcytosine,
    causing DNA hypermethylation. This CpG island methylator phenotype (CIMP) silences
    tumor suppressor genes and differentiation programs, contributing to the block
    in
    cellular differentiation characteristic of IDH-mutant tumors.
  biological_processes:
  - preferred_term: DNA methylation
    modifier: INCREASED
    term:
      id: GO:0040029
      label: epigenetic regulation of gene expression
  downstream:
  - target: Differentiation Block and Tumor Growth
    description: Epigenetic silencing impairs normal differentiation programs
- name: Histone Methylation Alterations
  description: >-
    2-HG inhibits Jumonji domain-containing histone demethylases, leading to accumulation
    of repressive histone methylation marks (H3K9me3, H3K27me3). This contributes
    to
    transcriptional silencing and the differentiation block.
- name: Differentiation Block and Tumor Growth
  description: >-
    Combined epigenetic alterations block normal cholangiocyte differentiation, maintaining
    cells in a progenitor-like state with proliferative capacity. This promotes tumor
    growth while the cells retain sensitivity to IDH inhibition, which can restore
    differentiation programs.
  biological_processes:
  - preferred_term: cell population proliferation
    modifier: INCREASED
    term:
      id: GO:0008283
      label: cell population proliferation
histopathology:
- name: Well Differentiated Cholangiocarcinoma
  finding_term:
    preferred_term: Cholangiocarcinoma
    term:
      id: NCIT:C4436
      label: Cholangiocarcinoma
  frequency: VERY_FREQUENT
  description: Most cholangiocarcinomas are well differentiated.
  evidence:
  - reference: PMID:12901270
    reference_title: "[Cholangiocarcinoma--bile ducts cancer]."
    supports: PARTIAL
    snippet: "Histologically, 90-95% of CC are well differentiated"
    explanation: Abstract notes that the majority of cholangiocarcinomas are well differentiated.

phenotypes:
- category: Hepatic
  name: Hepatomegaly
  frequency: FREQUENT
  description: >-
    Liver enlargement from tumor mass. Intrahepatic cholangiocarcinoma typically presents
    as a liver mass.
  phenotype_term:
    preferred_term: Hepatomegaly
    term:
      id: HP:0002240
      label: Hepatomegaly
- category: Hepatic
  name: Jaundice
  frequency: FREQUENT
  description: >-
    Jaundice may result from biliary obstruction by tumor or diffuse hepatic involvement.
    Less common in intrahepatic compared to hilar or distal cholangiocarcinoma.
  phenotype_term:
    preferred_term: Jaundice
    term:
      id: HP:0000952
      label: Jaundice
- category: Gastrointestinal
  name: Abdominal Pain
  frequency: FREQUENT
  description: >-
    Right upper quadrant pain or discomfort from tumor mass effect or liver capsule
    involvement.
  phenotype_term:
    preferred_term: Abdominal pain
    term:
      id: HP:0002027
      label: Abdominal pain
- category: Constitutional
  name: Weight Loss
  frequency: FREQUENT
  description: >-
    Unintentional weight loss from cancer cachexia and reduced oral intake.
  phenotype_term:
    preferred_term: Weight loss
    term:
      id: HP:0001824
      label: Weight loss
- category: Constitutional
  name: Fatigue
  frequency: FREQUENT
  description: >-
    Fatigue from hepatic dysfunction and advanced disease.
  phenotype_term:
    preferred_term: Fatigue
    term:
      id: HP:0012378
      label: Fatigue
- category: Gastrointestinal
  name: Nausea
  frequency: OCCASIONAL
  description: >-
    Nausea from hepatic dysfunction or disease-related effects.
  phenotype_term:
    preferred_term: Nausea
    term:
      id: HP:0002018
      label: Nausea
biochemical:
- name: Serum 2-HG
  notes: >-
    D-2-hydroxyglutarate can be measured in serum and serves as a pharmacodynamic
    biomarker
    for IDH inhibitor activity. Levels decrease with effective IDH inhibition.
- name: CA 19-9
  notes: >-
    Carbohydrate antigen 19-9 is often elevated in cholangiocarcinoma but is not specific.
    Useful for monitoring treatment response when elevated at baseline.
- name: Liver Function Tests
  notes: >-
    Elevated alkaline phosphatase, GGT, and bilirubin may indicate biliary obstruction.
    Transaminases may be elevated with hepatic involvement.
genetic:
- name: IDH1
  association: Somatic Neomorphic Mutation
  notes: >-
    IDH1 R132 mutations (R132C, R132H, R132G, R132S, R132L) occur in approximately
    15%
    of intrahepatic cholangiocarcinomas. The R132C substitution is most common in
    cholangiocarcinoma (unlike R132H in glioma). Ivosidenib specifically targets IDH1
    mutant protein.
  evidence:
  - reference: PMID:24569570
    reference_title: "Mutations of isocitrate dehydrogenase 1 and 2 in intrahepatic cholangiocarcinoma."
    supports: PARTIAL
    snippet: "Hotspot mutations in IDH isoforms 1 or 2 occur in approximately 15% of intrahepatic cholangiocarcinomas."
    explanation: "Abstract reports IDH1/2 hotspot mutations in intrahepatic cholangiocarcinoma."
- name: IDH2
  association: Somatic Neomorphic Mutation
  notes: >-
    IDH2 R172 and R140 mutations occur in approximately 3-5% of intrahepatic
    cholangiocarcinomas. Enasidenib targets IDH2 mutations but is not FDA-approved
    for cholangiocarcinoma.
  evidence:
  - reference: PMID:24569570
    reference_title: "Mutations of isocitrate dehydrogenase 1 and 2 in intrahepatic cholangiocarcinoma."
    supports: PARTIAL
    snippet: "Hotspot mutations in IDH isoforms 1 or 2 occur in approximately 15% of intrahepatic cholangiocarcinomas."
    explanation: "Abstract reports IDH1/2 hotspot mutations in intrahepatic cholangiocarcinoma."
- name: ARID1A
  association: Co-occurring Mutations
  notes: >-
    ARID1A mutations co-occur with IDH mutations in cholangiocarcinoma more frequently
    than expected by chance, suggesting cooperative oncogenic effects.
- name: BAP1
  association: Co-occurring Mutations
  notes: >-
    BAP1 mutations may co-occur with IDH mutations in cholangiocarcinoma. Germline
    BAP1
    mutations are associated with tumor predisposition syndrome including cholangiocarcinoma.
treatments:
- name: Ivosidenib
  description: >-
    Selective small molecule inhibitor of mutant IDH1 approved for previously treated
    IDH1-mutant cholangiocarcinoma. ClarIDHy trial demonstrated improved progression-free
    survival compared to placebo (2.7 vs 1.4 months) with manageable toxicity and
    maintenance of quality of life.
  treatment_term:
    preferred_term: targeted therapy
    term:
      id: NCIT:C93352
      label: Targeted Therapy
    therapeutic_agent:
    - preferred_term: ivosidenib
      term:
        id: CHEBI:145430
        label: ivosidenib
- name: Gemcitabine plus Cisplatin
  description: >-
    First-line standard chemotherapy for advanced cholangiocarcinoma regardless of
    IDH
    status. ABC-02 trial established this combination as standard of care. IDH-mutant
    tumors may have similar or slightly better chemotherapy response.
  treatment_term:
    preferred_term: chemotherapy
    term:
      id: MAXO:0000647
      label: chemotherapy
- name: Gemcitabine plus Cisplatin plus Durvalumab
  description: >-
    Addition of anti-PD-L1 durvalumab to gemcitabine/cisplatin improves survival in
    first-line treatment of biliary tract cancers (TOPAZ-1 trial). Now standard first-line
    treatment for advanced cholangiocarcinoma.
  treatment_term:
    preferred_term: immunotherapy
    term:
      id: NCIT:C15262
      label: Immunotherapy
    therapeutic_agent:
    - preferred_term: durvalumab
      term:
        id: NCIT:C103194
        label: Durvalumab
    - preferred_term: cisplatin
      term:
        id: CHEBI:27899
        label: cisplatin
- name: Surgical Resection
  description: >-
    Surgery offers the only chance for cure in cholangiocarcinoma. Hepatectomy with
    adequate margins for intrahepatic tumors. Limited by advanced stage at presentation
    in most patients.
  treatment_term:
    preferred_term: surgical procedure
    term:
      id: MAXO:0000004
      label: surgical procedure
disease_term:
  preferred_term: IDH-mutant cholangiocarcinoma
  term:
    id: MONDO:0003210
    label: intrahepatic cholangiocarcinoma

classifications:
  icdo_morphology:
    classification_value: Adenocarcinoma
  harrisons_chapter:
  - classification_value: cancer
  - classification_value: solid tumor
references:
- reference: DOI:10.1007/s00280-023-04633-5
  title: 'Pharmacokinetics/pharmacodynamics of ivosidenib in advanced IDH1-mutant cholangiocarcinoma: findings from the phase III ClarIDHy study'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: Report pharmacokinetic (PK)/pharmacodynamic (PD) findings from the phase III ClarIDHy study and any association between PK/PD parameters and treatment outcomes in this population.
    supporting_text: Report pharmacokinetic (PK)/pharmacodynamic (PD) findings from the phase III ClarIDHy study and any association between PK/PD parameters and treatment outcomes in this population.
    evidence:
    - reference: DOI:10.1007/s00280-023-04633-5
      reference_title: 'Pharmacokinetics/pharmacodynamics of ivosidenib in advanced IDH1-mutant cholangiocarcinoma: findings from the phase III ClarIDHy study'
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: Report pharmacokinetic (PK)/pharmacodynamic (PD) findings from the phase III ClarIDHy study and any association between PK/PD parameters and treatment outcomes in this population.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.1007/s11523-023-01002-3
  title: 'Ivosidenib: A Review in Advanced Cholangiocarcinoma'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: 'Ivosidenib: A Review in Advanced Cholangiocarcinoma'
    supporting_text: 'Ivosidenib: A Review in Advanced Cholangiocarcinoma'
- reference: DOI:10.1080/20450923.2024.2403334
  title: 'Integration of circulating tumor DNA in biliary tract cancer: the emerging landscape'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: 'Integration of circulating tumor DNA in biliary tract cancer: the emerging landscape'
    supporting_text: 'Integration of circulating tumor DNA in biliary tract cancer: the emerging landscape'
- reference: DOI:10.1126/scitranslmed.adj7685
  title: SRC inhibition enables formation of a growth suppressive MAGI1-PP2A complex in isocitrate dehydrogenase-mutant cholangiocarcinoma
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: Intrahepatic cholangiocarcinoma (ICC) is an aggressive bile duct malignancy that frequently exhibits isocitrate dehydrogenase ( IDH1/IDH2 ) mutations.
    supporting_text: Intrahepatic cholangiocarcinoma (ICC) is an aggressive bile duct malignancy that frequently exhibits isocitrate dehydrogenase ( IDH1/IDH2 ) mutations.
    evidence:
    - reference: DOI:10.1126/scitranslmed.adj7685
      reference_title: SRC inhibition enables formation of a growth suppressive MAGI1-PP2A complex in isocitrate dehydrogenase-mutant cholangiocarcinoma
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: Intrahepatic cholangiocarcinoma (ICC) is an aggressive bile duct malignancy that frequently exhibits isocitrate dehydrogenase ( IDH1/IDH2 ) mutations.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.1136/gutjnl-2021-326514
  title: Novel microenvironment-based classification of intrahepatic cholangiocarcinoma with therapeutic implications
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: The diversity of the tumour microenvironment (TME) of intrahepatic cholangiocarcinoma (iCCA) has not been comprehensively assessed.
    supporting_text: The diversity of the tumour microenvironment (TME) of intrahepatic cholangiocarcinoma (iCCA) has not been comprehensively assessed.
    evidence:
    - reference: DOI:10.1136/gutjnl-2021-326514
      reference_title: Novel microenvironment-based classification of intrahepatic cholangiocarcinoma with therapeutic implications
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: The diversity of the tumour microenvironment (TME) of intrahepatic cholangiocarcinoma (iCCA) has not been comprehensively assessed.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.1158/1078-0432.ccr-21-4462
  title: 'FDA Approval Summary: Ivosidenib for the Treatment of Patients with Advanced Unresectable or Metastatic, Chemotherapy Refractory Cholangiocarcinoma with an IDH1 Mutation'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: 'FDA Approval Summary: Ivosidenib for the Treatment of Patients with Advanced Unresectable or Metastatic, Chemotherapy Refractory Cholangiocarcinoma with an IDH1 Mutation'
    supporting_text: On August 25, 2021, the FDA approved ivosidenib for the treatment of adult patients with unresectable locally advanced or metastatic hepatocellular isocitrate dehydrogenase 1 (IDH1) mutated cholangiocarcinoma (CCA) as detected by an FDA-approved test with disease progression after 1 to 2 prior lines of systemic therapy for advanced disease.
    evidence:
    - reference: DOI:10.1158/1078-0432.ccr-21-4462
      reference_title: 'FDA Approval Summary: Ivosidenib for the Treatment of Patients with Advanced Unresectable or Metastatic, Chemotherapy Refractory Cholangiocarcinoma with an IDH1 Mutation'
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: On August 25, 2021, the FDA approved ivosidenib for the treatment of adult patients with unresectable locally advanced or metastatic hepatocellular isocitrate dehydrogenase 1 (IDH1) mutated cholangiocarcinoma (CCA) as detected by an FDA-approved test with disease progression after 1 to 2 prior lines of systemic therapy for advanced disease.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.1159/000534443
  title: 'Genetic/Epigenetic Alteration and Tumor Immune Microenvironment in Intrahepatic Cholangiocarcinoma: Transforming the Immune Microenvironment with Molecular-Targeted Agents'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: Intrahepatic cholangiocarcinoma (iCCA) is often diagnosed at an advanced stage, leading to limited treatment options and a poor prognosis.
    supporting_text: Intrahepatic cholangiocarcinoma (iCCA) is often diagnosed at an advanced stage, leading to limited treatment options and a poor prognosis.
    evidence:
    - reference: DOI:10.1159/000534443
      reference_title: 'Genetic/Epigenetic Alteration and Tumor Immune Microenvironment in Intrahepatic Cholangiocarcinoma: Transforming the Immune Microenvironment with Molecular-Targeted Agents'
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: Intrahepatic cholangiocarcinoma (iCCA) is often diagnosed at an advanced stage, leading to limited treatment options and a poor prognosis.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.1159/000539665
  title: 'Sustained Clinical Response to Ivosidenib in Previously Treated Patients with Advanced Intrahepatic Cholangiocarcinoma Harboring an IDH1 R132 Mutation: Two Case Reports'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: 'Sustained Clinical Response to Ivosidenib in Previously Treated Patients with Advanced Intrahepatic Cholangiocarcinoma Harboring an IDH1 R132 Mutation: Two Case Reports'
    supporting_text: Patients with progressing intrahepatic cholangiocarcinoma (iCCA) harboring an isocitrate dehydrogenase 1 (IDH1) mutation who received ivosidenib showed a median progression-free survival (PFS) benefit of 1.3 months compared to placebo in the phase 3 ClarIDHy trial.
    evidence:
    - reference: DOI:10.1159/000539665
      reference_title: 'Sustained Clinical Response to Ivosidenib in Previously Treated Patients with Advanced Intrahepatic Cholangiocarcinoma Harboring an IDH1 R132 Mutation: Two Case Reports'
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: Patients with progressing intrahepatic cholangiocarcinoma (iCCA) harboring an isocitrate dehydrogenase 1 (IDH1) mutation who received ivosidenib showed a median progression-free survival (PFS) benefit of 1.3 months compared to placebo in the phase 3 ClarIDHy trial.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.1177/17588359231171574
  title: 'Updated survival outcomes with ivosidenib in patients with previously treated IDH1-mutated intrahepatic-cholangiocarcinoma: an Italian real-world experience'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: The results of the phase III ClarIDHy trial led to the FDA approval of ivosidenib as a therapeutic option for patients with locally advanced or metastatic cholangiocarcinoma (CCA) harboring isocitrate dehydrogenase 1 (IDH1) mutations.
    supporting_text: The results of the phase III ClarIDHy trial led to the FDA approval of ivosidenib as a therapeutic option for patients with locally advanced or metastatic cholangiocarcinoma (CCA) harboring isocitrate dehydrogenase 1 (IDH1) mutations.
    evidence:
    - reference: DOI:10.1177/17588359231171574
      reference_title: 'Updated survival outcomes with ivosidenib in patients with previously treated IDH1-mutated intrahepatic-cholangiocarcinoma: an Italian real-world experience'
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: The results of the phase III ClarIDHy trial led to the FDA approval of ivosidenib as a therapeutic option for patients with locally advanced or metastatic cholangiocarcinoma (CCA) harboring isocitrate dehydrogenase 1 (IDH1) mutations.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.1186/s40164-023-00470-7
  title: Molecular profiling of biliary tract cancers reveals distinct genomic landscapes between circulating and tissue tumor DNA
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: Biliary tract cancers (BTCs) are heterogeneous malignancies with dismal prognosis due to tumor aggressiveness and poor response to limited current therapeutic options.
    supporting_text: Biliary tract cancers (BTCs) are heterogeneous malignancies with dismal prognosis due to tumor aggressiveness and poor response to limited current therapeutic options.
    evidence:
    - reference: DOI:10.1186/s40164-023-00470-7
      reference_title: Molecular profiling of biliary tract cancers reveals distinct genomic landscapes between circulating and tissue tumor DNA
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: Biliary tract cancers (BTCs) are heterogeneous malignancies with dismal prognosis due to tumor aggressiveness and poor response to limited current therapeutic options.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.1200/po.23.00544
  title: Comprehensive Immunogenomic Profiling of <i>IDH1-</i>/<i>2</i>-Altered Cholangiocarcinoma
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: Isocitrate dehydrogenase ( IDH) 1/ 2 genomic alterations (GA) occur in 20% of intrahepatic cholangiocarcinoma (iCCA); however, the immunogenomic landscape of IDH1-/2-mutated iCCA is largely unknown.
    supporting_text: Isocitrate dehydrogenase ( IDH) 1/ 2 genomic alterations (GA) occur in 20% of intrahepatic cholangiocarcinoma (iCCA); however, the immunogenomic landscape of IDH1-/2-mutated iCCA is largely unknown.
    evidence:
    - reference: DOI:10.1200/po.23.00544
      reference_title: Comprehensive Immunogenomic Profiling of <i>IDH1-</i>/<i>2</i>-Altered Cholangiocarcinoma
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: Isocitrate dehydrogenase ( IDH) 1/ 2 genomic alterations (GA) occur in 20% of intrahepatic cholangiocarcinoma (iCCA); however, the immunogenomic landscape of IDH1-/2-mutated iCCA is largely unknown.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.2139/ssrn.3977450
  title: 'Ivosidenib in IDH1-Mutated Cholangiocarcinoma: Clinical Evaluation and Future Directions'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: 'Ivosidenib in IDH1-Mutated Cholangiocarcinoma: Clinical Evaluation and Future Directions'
    supporting_text: 'Ivosidenib in IDH1-Mutated Cholangiocarcinoma: Clinical Evaluation and Future Directions'
- reference: DOI:10.3390/biology13090662
  title: 'The Constellation of Risk Factors and Paraneoplastic Syndromes in Cholangiocarcinoma: Integrating the Endocrine Panel Amid Tumour-Related Biology (A Narrative Review)'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: 'The Constellation of Risk Factors and Paraneoplastic Syndromes in Cholangiocarcinoma: Integrating the Endocrine Panel Amid Tumour-Related Biology (A Narrative Review)'
    supporting_text: Cholangiocarcinomas (CCAs), a heterogeneous group of challenging malignant tumours which originate from the biliary epithelium, are associated with an alarming increasing incidence during recent decades that varies between different regions of the globe.
    evidence:
    - reference: DOI:10.3390/biology13090662
      reference_title: 'The Constellation of Risk Factors and Paraneoplastic Syndromes in Cholangiocarcinoma: Integrating the Endocrine Panel Amid Tumour-Related Biology (A Narrative Review)'
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: Cholangiocarcinomas (CCAs), a heterogeneous group of challenging malignant tumours which originate from the biliary epithelium, are associated with an alarming increasing incidence during recent decades that varies between different regions of the globe.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
- reference: DOI:10.3390/cancers15204947
  title: 'Primary Sclerosing Cholangitis-Associated Cholangiocarcinoma: From Pathogenesis to Diagnostic and Surveillance Strategies'
  found_in:
  - IDH_Mutant_Cholangiocarcinoma-deep-research-falcon.md
  findings:
  - statement: Cholangiocarcinoma (CCA) is the most common malignancy in patients with primary sclerosing cholangitis (PSC), accounting for 2–8% of cases and being the leading cause of death in these patients.
    supporting_text: Cholangiocarcinoma (CCA) is the most common malignancy in patients with primary sclerosing cholangitis (PSC), accounting for 2–8% of cases and being the leading cause of death in these patients.
    evidence:
    - reference: DOI:10.3390/cancers15204947
      reference_title: 'Primary Sclerosing Cholangitis-Associated Cholangiocarcinoma: From Pathogenesis to Diagnostic and Surveillance Strategies'
      supports: SUPPORT
      evidence_source: OTHER
      snippet: Cholangiocarcinoma (CCA) is the most common malignancy in patients with primary sclerosing cholangitis (PSC), accounting for 2–8% of cases and being the leading cause of death in these patients.
      explanation: Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
📚

References & Deep Research

References

14
Pharmacokinetics/pharmacodynamics of ivosidenib in advanced IDH1-mutant cholangiocarcinoma: findings from the phase III ClarIDHy study
1 finding
Report pharmacokinetic (PK)/pharmacodynamic (PD) findings from the phase III ClarIDHy study and any association between PK/PD parameters and treatment outcomes in this population.
"Report pharmacokinetic (PK)/pharmacodynamic (PD) findings from the phase III ClarIDHy study and any association between PK/PD parameters and treatment outcomes in this population."
Show evidence (1 reference)
DOI:10.1007/s00280-023-04633-5 SUPPORT Human Clinical
"Report pharmacokinetic (PK)/pharmacodynamic (PD) findings from the phase III ClarIDHy study and any association between PK/PD parameters and treatment outcomes in this population."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
Ivosidenib: A Review in Advanced Cholangiocarcinoma
1 finding
Ivosidenib: A Review in Advanced Cholangiocarcinoma
"Ivosidenib: A Review in Advanced Cholangiocarcinoma"
Integration of circulating tumor DNA in biliary tract cancer: the emerging landscape
1 finding
Integration of circulating tumor DNA in biliary tract cancer: the emerging landscape
"Integration of circulating tumor DNA in biliary tract cancer: the emerging landscape"
SRC inhibition enables formation of a growth suppressive MAGI1-PP2A complex in isocitrate dehydrogenase-mutant cholangiocarcinoma
1 finding
Intrahepatic cholangiocarcinoma (ICC) is an aggressive bile duct malignancy that frequently exhibits isocitrate dehydrogenase ( IDH1/IDH2 ) mutations.
"Intrahepatic cholangiocarcinoma (ICC) is an aggressive bile duct malignancy that frequently exhibits isocitrate dehydrogenase ( IDH1/IDH2 ) mutations."
Show evidence (1 reference)
DOI:10.1126/scitranslmed.adj7685 SUPPORT Human Clinical
"Intrahepatic cholangiocarcinoma (ICC) is an aggressive bile duct malignancy that frequently exhibits isocitrate dehydrogenase ( IDH1/IDH2 ) mutations."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
Novel microenvironment-based classification of intrahepatic cholangiocarcinoma with therapeutic implications
1 finding
The diversity of the tumour microenvironment (TME) of intrahepatic cholangiocarcinoma (iCCA) has not been comprehensively assessed.
"The diversity of the tumour microenvironment (TME) of intrahepatic cholangiocarcinoma (iCCA) has not been comprehensively assessed."
Show evidence (1 reference)
DOI:10.1136/gutjnl-2021-326514 SUPPORT Human Clinical
"The diversity of the tumour microenvironment (TME) of intrahepatic cholangiocarcinoma (iCCA) has not been comprehensively assessed."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
FDA Approval Summary: Ivosidenib for the Treatment of Patients with Advanced Unresectable or Metastatic, Chemotherapy Refractory Cholangiocarcinoma with an IDH1 Mutation
1 finding
FDA Approval Summary: Ivosidenib for the Treatment of Patients with Advanced Unresectable or Metastatic, Chemotherapy Refractory Cholangiocarcinoma with an IDH1 Mutation
"On August 25, 2021, the FDA approved ivosidenib for the treatment of adult patients with unresectable locally advanced or metastatic hepatocellular isocitrate dehydrogenase 1 (IDH1) mutated cholangiocarcinoma (CCA) as detected by an FDA-approved test with disease progression after 1 to 2 prior..."
Show evidence (1 reference)
DOI:10.1158/1078-0432.ccr-21-4462 SUPPORT Human Clinical
"On August 25, 2021, the FDA approved ivosidenib for the treatment of adult patients with unresectable locally advanced or metastatic hepatocellular isocitrate dehydrogenase 1 (IDH1) mutated cholangiocarcinoma (CCA) as detected by an FDA-approved test with disease progression after 1 to 2 prior..."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
Genetic/Epigenetic Alteration and Tumor Immune Microenvironment in Intrahepatic Cholangiocarcinoma: Transforming the Immune Microenvironment with Molecular-Targeted Agents
1 finding
Intrahepatic cholangiocarcinoma (iCCA) is often diagnosed at an advanced stage, leading to limited treatment options and a poor prognosis.
"Intrahepatic cholangiocarcinoma (iCCA) is often diagnosed at an advanced stage, leading to limited treatment options and a poor prognosis."
Show evidence (1 reference)
DOI:10.1159/000534443 SUPPORT Human Clinical
"Intrahepatic cholangiocarcinoma (iCCA) is often diagnosed at an advanced stage, leading to limited treatment options and a poor prognosis."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
Sustained Clinical Response to Ivosidenib in Previously Treated Patients with Advanced Intrahepatic Cholangiocarcinoma Harboring an IDH1 R132 Mutation: Two Case Reports
1 finding
Sustained Clinical Response to Ivosidenib in Previously Treated Patients with Advanced Intrahepatic Cholangiocarcinoma Harboring an IDH1 R132 Mutation: Two Case Reports
"Patients with progressing intrahepatic cholangiocarcinoma (iCCA) harboring an isocitrate dehydrogenase 1 (IDH1) mutation who received ivosidenib showed a median progression-free survival (PFS) benefit of 1.3 months compared to placebo in the phase 3 ClarIDHy trial."
Show evidence (1 reference)
DOI:10.1159/000539665 SUPPORT Human Clinical
"Patients with progressing intrahepatic cholangiocarcinoma (iCCA) harboring an isocitrate dehydrogenase 1 (IDH1) mutation who received ivosidenib showed a median progression-free survival (PFS) benefit of 1.3 months compared to placebo in the phase 3 ClarIDHy trial."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
Updated survival outcomes with ivosidenib in patients with previously treated IDH1-mutated intrahepatic-cholangiocarcinoma: an Italian real-world experience
1 finding
The results of the phase III ClarIDHy trial led to the FDA approval of ivosidenib as a therapeutic option for patients with locally advanced or metastatic cholangiocarcinoma (CCA) harboring isocitrate dehydrogenase 1 (IDH1) mutations.
"The results of the phase III ClarIDHy trial led to the FDA approval of ivosidenib as a therapeutic option for patients with locally advanced or metastatic cholangiocarcinoma (CCA) harboring isocitrate dehydrogenase 1 (IDH1) mutations."
Show evidence (1 reference)
DOI:10.1177/17588359231171574 SUPPORT Human Clinical
"The results of the phase III ClarIDHy trial led to the FDA approval of ivosidenib as a therapeutic option for patients with locally advanced or metastatic cholangiocarcinoma (CCA) harboring isocitrate dehydrogenase 1 (IDH1) mutations."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
Molecular profiling of biliary tract cancers reveals distinct genomic landscapes between circulating and tissue tumor DNA
1 finding
Biliary tract cancers (BTCs) are heterogeneous malignancies with dismal prognosis due to tumor aggressiveness and poor response to limited current therapeutic options.
"Biliary tract cancers (BTCs) are heterogeneous malignancies with dismal prognosis due to tumor aggressiveness and poor response to limited current therapeutic options."
Show evidence (1 reference)
DOI:10.1186/s40164-023-00470-7 SUPPORT Human Clinical
"Biliary tract cancers (BTCs) are heterogeneous malignancies with dismal prognosis due to tumor aggressiveness and poor response to limited current therapeutic options."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
Comprehensive Immunogenomic Profiling of <i>IDH1-</i>/<i>2</i>-Altered Cholangiocarcinoma
1 finding
Isocitrate dehydrogenase ( IDH) 1/ 2 genomic alterations (GA) occur in 20% of intrahepatic cholangiocarcinoma (iCCA); however, the immunogenomic landscape of IDH1-/2-mutated iCCA is largely unknown.
"Isocitrate dehydrogenase ( IDH) 1/ 2 genomic alterations (GA) occur in 20% of intrahepatic cholangiocarcinoma (iCCA); however, the immunogenomic landscape of IDH1-/2-mutated iCCA is largely unknown."
Show evidence (1 reference)
DOI:10.1200/po.23.00544 SUPPORT Human Clinical
"Isocitrate dehydrogenase ( IDH) 1/ 2 genomic alterations (GA) occur in 20% of intrahepatic cholangiocarcinoma (iCCA); however, the immunogenomic landscape of IDH1-/2-mutated iCCA is largely unknown."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
Ivosidenib in IDH1-Mutated Cholangiocarcinoma: Clinical Evaluation and Future Directions
1 finding
Ivosidenib in IDH1-Mutated Cholangiocarcinoma: Clinical Evaluation and Future Directions
"Ivosidenib in IDH1-Mutated Cholangiocarcinoma: Clinical Evaluation and Future Directions"
The Constellation of Risk Factors and Paraneoplastic Syndromes in Cholangiocarcinoma: Integrating the Endocrine Panel Amid Tumour-Related Biology (A Narrative Review)
1 finding
The Constellation of Risk Factors and Paraneoplastic Syndromes in Cholangiocarcinoma: Integrating the Endocrine Panel Amid Tumour-Related Biology (A Narrative Review)
"Cholangiocarcinomas (CCAs), a heterogeneous group of challenging malignant tumours which originate from the biliary epithelium, are associated with an alarming increasing incidence during recent decades that varies between different regions of the globe."
Show evidence (1 reference)
DOI:10.3390/biology13090662 SUPPORT Human Clinical
"Cholangiocarcinomas (CCAs), a heterogeneous group of challenging malignant tumours which originate from the biliary epithelium, are associated with an alarming increasing incidence during recent decades that varies between different regions of the globe."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.
Primary Sclerosing Cholangitis-Associated Cholangiocarcinoma: From Pathogenesis to Diagnostic and Surveillance Strategies
1 finding
Cholangiocarcinoma (CCA) is the most common malignancy in patients with primary sclerosing cholangitis (PSC), accounting for 2–8% of cases and being the leading cause of death in these patients.
"Cholangiocarcinoma (CCA) is the most common malignancy in patients with primary sclerosing cholangitis (PSC), accounting for 2–8% of cases and being the leading cause of death in these patients."
Show evidence (1 reference)
"Cholangiocarcinoma (CCA) is the most common malignancy in patients with primary sclerosing cholangitis (PSC), accounting for 2–8% of cases and being the leading cause of death in these patients."
Deep research cited this publication as relevant literature for IDH Mutant Cholangiocarcinoma.

Deep Research

1
Falcon
1. Disease Information
Edison Scientific Literature 40 citations 2026-04-05T17:32:17.633874

1. Disease Information

Overview and classification

Cholangiocarcinoma (CCA) is a biliary tract cancer classified anatomically into intrahepatic, perihilar, and distal tumors. One recent review summarizes typical fractions as: intrahepatic 10–20%, perihilar 50–60%, distal 20–30% (Oct 2023) (frampton2023ivosidenibareview pages 1-2). IDH mutations are enriched in iCCA relative to extrahepatic CCA (lavacchi2022ivosidenibinidh1mutated pages 2-3, vaquero2024decipheringtheroleb pages 29-32).

Synonyms / alternative names (used in clinical research)

  • IDH1‑mutated cholangiocarcinoma” / “IDH1‑mutant cholangiocarcinoma” (casak2022fdaapprovalsummary pages 1-2)
  • mIDH1 cholangiocarcinoma” (mutant‑IDH1 cholangiocarcinoma) (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2, frampton2023ivosidenibareview pages 1-2)
  • IDH1/2‑altered iCCA” (makawita2024comprehensiveimmunogenomicprofiling pages 1-2)

Evidence source types represented in this report

  • Aggregated disease‑level resources / large cohorts: CGP cohort (n=3,067 iCCA) (makawita2024comprehensiveimmunogenomicprofiling pages 1-2)
  • Randomized phase III trial and regulatory summary: ClarIDHy / FDA approval summary (casak2022fdaapprovalsummary pages 1-2, casak2022fdaapprovalsummary media 6fe1eb4a, casak2022fdaapprovalsummary media 2f70fd07)
  • Real‑world clinical practice cohort: Italian experience (n=11) (muller2024sustainedclinicalresponse pages 1-2)
  • Mechanistic preclinical studies / models: organoids/PDX/cell lines; GEMMs (luk2024srcinhibitionenables pages 1-2, vaquero2024decipheringtherole pages 25-29)
  • High‑risk population disease context (PSC‑CCA): surveillance and risk estimates (catanzaro2023primarysclerosingcholangitisassociated pages 1-2, catanzaro2023primarysclerosingcholangitisassociated pages 9-11)

2. Etiology

Molecular etiology (defining causal factor for the subtype)

  • Primary causal molecular factor: somatic hotspot mutation in IDH1 (R132 substitutions; most commonly R132C) and/or IDH2 (R172, R140) (makawita2024comprehensiveimmunogenomicprofiling pages 1-2, casak2022fdaapprovalsummary pages 1-2).
  • Mechanistic hallmark: mutant IDH converts α‑KG to 2‑HG, which accumulates and disrupts α‑KG–dependent enzymes, including DNA/histone demethylases; this creates a hypermethylated state and altered differentiation programs (vaquero2024decipheringtheroleb pages 29-32).

Clinical risk factors (general CCA / iCCA; subtype-specific data limited)

Direct epidemiologic risk-factor data specific to IDH-mutant iCCA were not identified in the available primary evidence. However, several strong risk factors for cholangiocarcinoma in general, and for specific etiologic subtypes, are well supported in the retrieved corpus:

1) Primary sclerosing cholangitis (PSC) (high-risk context for CCA overall) - PSC confers a very large increase in CCA risk; one 2023 review reports “400–600‑fold increased risk” versus the general population and an annual risk 0.5–1.5% (Oct 2023) (catanzaro2023primarysclerosingcholangitisassociated pages 1-2). - Reported PSC‑CCA lifetime prevalence in that review ranges 6–13%, with a substantial fraction (≈30–50%) diagnosed within the first year after PSC diagnosis (catanzaro2023primarysclerosingcholangitisassociated pages 1-2, catanzaro2023primarysclerosingcholangitisassociated pages 2-4).

2) Liver fluke infection (etiologic driver for endemic fluke‑related CCA; largely perihilar/extrahepatic patterns in many settings; IDH-mutant enrichment in non-fluke iCCA is suggested in a review) - A 2024 high‑risk community screening in Lao PDR (Opisthorchis viverrini endemic) reported a prevalence of suspected CCA of 7.2% among 3,400 participants and association with O. viverrini infection (aOR 3.4, 95% CI 1.7–6.5) (Nov 2024) (homsana2024; retrieved earlier but not in cite list—no context id available for citation in this run; therefore not asserted here). - In the retrieved corpus, liver fluke infection is repeatedly described as a major cause in endemic regions (qualitative, not subtype-specific) (ciobica2024theconstellationof pages 2-3, catanzaro2023primarysclerosingcholangitisassociated pages 2-4).

3) Chronic viral hepatitis and chronic liver disease - iCCA risk factors include chronic hepatitis B/C in a 2024 Liver Cancer review (Oct 2024) (nishida2024geneticepigeneticalterationand pages 1-2).

Protective factors

Subtype‑specific protective genetic or environmental factors were not identified in the retrieved primary evidence.

Gene–environment interactions

Direct evidence for gene–environment interactions specifically shaping IDH‑mutant cholangiocarcinoma was not found in the retrieved primary sources.

3. Phenotypes (clinical presentation; HPO mapping)

The retrieved sources emphasize that cholangiocarcinoma is often detected late and may be clinically silent early: - iCCA is “typically asymptomatic early and often diagnosed at an advanced stage” (Oct 2024) (nishida2024geneticepigeneticalterationand pages 1-2).

However, specific symptom frequencies (e.g., jaundice, pruritus, RUQ pain, weight loss) and phenotype prevalence statistics for IDH‑mutant iCCA were not present in the retrieved evidence base used for this report.

Practical phenotype/HPO suggestions (generic for cholangiocarcinoma; requires confirmation in dedicated clinical sources)

Because phenotype evidence was not captured by the current corpus, the following should be treated as ontology placeholders requiring confirmation from dedicated clinical phenotype literature: - Obstructive jaundice (HPO: Jaundice HP:0000952) - Pruritus (HP:0000989) - Abdominal pain (HP:0002027) - Weight loss (HP:0001824) - Elevated bilirubin / cholestasis labs (e.g., Hyperbilirubinemia HP:0002904)

4. Genetic / Molecular Information

Causal genes and mutation spectrum

  • Causal genes (somatic drivers for this molecular subtype):
  • IDH1 (isocitrate dehydrogenase (NADP(+)) 1)
  • IDH2 (isocitrate dehydrogenase (NADP(+)) 2)

  • Large cohort frequencies (advanced iCCA): in 3,067 iCCA cases, IDH1 alterations 14% and IDH2 alterations 4% (Mar 2024) (makawita2024comprehensiveimmunogenomicprofiling pages 1-2).

  • Variant spectrum (same cohort):
  • IDH1: R132C 69%; R132L/G/S/H/F 16%/7%/4%/3%/<1% (makawita2024comprehensiveimmunogenomicprofiling pages 1-2).
  • IDH2: R172 94.4%; R140 6.6% (makawita2024comprehensiveimmunogenomicprofiling pages 1-2).

  • ClarIDHy trial baseline mutation distribution (IDH1‑mutant CCA): R132C was predominant (68–74% depending on arm), with other R132 substitutions present (Mar 2022) (casak2022fdaapprovalsummary pages 1-2).

Cohort / source Disease cohort / setting Sample size % IDH1 % IDH2 Predominant variant(s) and proportions Key associated features
Makawita et al., JCO Precision Oncology 2024 Advanced intrahepatic cholangiocarcinoma (comprehensive genomic profiling cohort) 3,067 iCCA cases 14% (426/3,067) 4% (125/3,067) IDH1: R132C 69%; R132L/G/S/H/F 16%/7%/4%/3%/<1%. IDH2: R172 94.4%; R140 6.6% (makawita2024comprehensiveimmunogenomicprofiling pages 1-2) IDH1/2-altered tumors were described as “immunologically cold”; compared with IDH-wildtype iCCA they had lower MSI-High, lower TMB ≥10 mut/Mb, and lower PD-L1 positivity; co-mutation patterns differed from IDH-wildtype; no significant mOS difference in retrospective analysis (makawita2024comprehensiveimmunogenomicprofiling pages 1-2)
Casak et al., Clinical Cancer Research 2022 FDA approval summary (ClarIDHy baseline population) Previously treated advanced unresectable/metastatic IDH1-mutant cholangiocarcinoma, predominantly intrahepatic 185 total (124 ivosidenib; 61 placebo) 100% by trial eligibility Not reported / not eligible IDH1 arm distributions: R132C 68% and 74% (ivosidenib/placebo), R132G 14% and 10%, R132L 17% and 11%, R132H 0% and 3%, R132S 2% and 2% (casak2022fdaapprovalsummary pages 1-2) Population was predominantly intrahepatic (90–95%), metastatic (92–93%), with female predominance (~61–65%); this source is a treatment-registration cohort and does not report IDH2 frequency, immunogenomic phenotype, or co-mutation landscape (casak2022fdaapprovalsummary pages 1-2)
Lavacchi et al., Pharmacology & Therapeutics 2022 (review summarizing phase I and disease biology) IDH1-mutant cholangiocarcinoma, mainly intrahepatic; includes phase I ivosidenib cohort and background epidemiology Phase I cohort: 73 pretreated patients (89% intrahepatic) ~10–20% of iCCA; <1% of extrahepatic CCA Hotspots noted at IDH2 R140/R172, but cohort-level % IDH2 not given In phase I background cohort, R132C 77% and R132L 11% were the most frequent IDH1 variants; hotspot codons emphasized: IDH1 R132, IDH2 R140/R172 (lavacchi2022ivosidenibinidh1mutated pages 2-3) IDH mutations drive 2-HG accumulation and epigenetic dysregulation; reported baseline/acquired co-alterations included PBRM1, ARID1A, PIK3CA, KRAS; resistance mutations included IDH2-R172V and IDH1-R132F at progression (lavacchi2022ivosidenibinidh1mutated pages 2-3)

Table: This table compares key published sources on IDH1/IDH2 alterations in cholangiocarcinoma, emphasizing intrahepatic cholangiocarcinoma. It highlights mutation frequencies, dominant hotspot variants, and clinically relevant associated features such as immune phenotype and co-alteration patterns.

Somatic vs germline

All evidence in this report treats IDH1/2 alterations as tumor genomic alterations (somatic) in cholangiocarcinoma; germline causal IDH1/2 variants were not discussed in retrieved sources (makawita2024comprehensiveimmunogenomicprofiling pages 1-2, casak2022fdaapprovalsummary pages 1-2).

Functional consequences and oncometabolite biology

A key mechanistic chain supported by multiple sources: 1) Mutant IDH1 (cytosolic) converts α‑KG → 2‑HG (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2, vaquero2024decipheringtheroleb pages 29-32). 2) 2‑HG accumulation inhibits α‑KG–dependent enzymes (including DNA/histone demethylases), producing hypermethylation and altered differentiation programs (vaquero2024decipheringtheroleb pages 29-32). 3) Immune consequences: IDH1/2 mutations are linked to hypermethylation and downregulation of antigen processing/presentation machinery and are enriched in non‑inflamed (“cold”) iCCA microenvironments (nishida2024geneticepigeneticalterationand pages 1-2, makawita2024comprehensiveimmunogenomicprofiling pages 1-2).

Direct abstract quote (PK/PD mechanistic biomarker): Fan et al. measured that in ivosidenib‑treated patients, “mean plasma 2‑HG concentration was reduced from 1108 ng/mL at baseline to 97.7 ng/mL at C2D1… An average 2‑HG inhibition of 75.0% was observed at steady state” (Jan 2024) (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2).

Co-mutations / molecular context

  • In a real‑world cohort of 11 IDH1‑mutant CCA treated with ivosidenib, common co‑alterations included TP53, BAP1, CDKN2A, CDKN2B (Jan 2023) (muller2024sustainedclinicalresponse pages 1-2).
  • In the 2024 CGP cohort study, patterns of comutations differed between IDH1/2+ and IDH‑wildtype iCCA, though detailed lists were not fully captured in the excerpt (makawita2024comprehensiveimmunogenomicprofiling pages 1-2).

Immunogenomic phenotype (2024 large-cohort evidence)

Compared with IDH‑wildtype iCCA, IDH1/2‑altered iCCA showed lower frequency of multiple immune biomarkers: - MSI‑High lower (P=0.009) - TMB ≥10 mut/Mb lower (P<0.0001) - PD‑L1 positivity lower and the authors conclude: “IDH1-/2-mutated tumors appear immunologically cold” (Mar 2024) (makawita2024comprehensiveimmunogenomicprofiling pages 1-2).

Ontology suggestions (molecular processes and cell types)

GO Biological Process (suggested): - DNA methylation / epigenetic regulation (supported by hypermethylation phenotype) (vaquero2024decipheringtheroleb pages 29-32) - Antigen processing and presentation (downregulated/hypermethylated in IDH-mutant iCCA) (nishida2024geneticepigeneticalterationand pages 1-2) - Translation / ribosomal signaling and S6 phosphorylation (IDHm dependency discussed below) (luk2024srcinhibitionenables pages 1-2)

Cell Ontology (CL) candidates (supported by TME-class studies): - Macrophage populations enriched in certain IDH-enriched TME classes (“M2-like” macrophage enrichment) (martinserrano2023novelmicroenvironmentbasedclassification pages 1-3)

5. Environmental Information

Evidence captured here is largely for general CCA etiologies, not specifically IDH-mutant tumors. - Infectious agent exposure: liver flukes as etiologic factors for CCA in endemic regions (qualitative) (ciobica2024theconstellationof pages 2-3, catanzaro2023primarysclerosingcholangitisassociated pages 2-4). - Autoimmune/inflammatory biliary disease: PSC as a strong risk condition (catanzaro2023primarysclerosingcholangitisassociated pages 1-2).

6. Mechanism / Pathophysiology

Causal chain (from mutation to phenotype)

A current integrated causal chain for IDH‑mutant iCCA supported by retrieved evidence: 1) Somatic IDH1/2 hotspot mutation → 2) 2‑HG accumulation → 3) Epigenetic reprogramming / hypermethylation (TET/Jmj inhibition) and downstream differentiation programs (vaquero2024decipheringtheroleb pages 29-32) → 4) Immune-cold tumor microenvironment through hypermethylation/downregulation of antigen presentation machinery (nishida2024geneticepigeneticalterationand pages 1-2) → 5) Clinically relevant therapeutic vulnerability to mutant IDH1 inhibition (2‑HG suppression) and additional pathway dependencies (SRC/S6K) (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2, luk2024srcinhibitionenables pages 1-2).

Immune microenvironment classification (iCCA)

A large transcriptomic meta‑analysis (~900 iCCAs) introduced a TME-based “STIM” classification with both inflamed and non‑inflamed classes (May 2023) (martinserrano2023novelmicroenvironmentbasedclassification pages 1-3). Of particular relevance: - A non‑inflamed “hepatic stem‑like” class (~35%) is enriched in IDH1/2 mutations and BAP1, and includes enrichment of “M2‑like macrophages” (martinserrano2023novelmicroenvironmentbasedclassification pages 1-3).

Mechanistic dependency discovered in 2024 (SRC → MAGI1‑PP2A → S6K/S6)

A 2024 Science Translational Medicine study reported an actionable dependency in IDH‑mutant iCCA: - “Mutant IDH (IDHm) ICC is dependent on SRC kinase for growth and survival and is hypersensitive to inhibition by dasatinib” (May 2024) (luk2024srcinhibitionenables pages 1-2). - Mechanism: SRC suppresses a tumor‑suppressive MAGI1–PP2A complex; SRC inhibition enables PP2A-mediated dephosphorylation of S6K, decreasing protein synthesis and promoting cell death; resistance correlates with increased pS6; combination of dasatinib + M2698 showed enhanced inhibition in cell lines, organoids, and PDX (luk2024srcinhibitionenables pages 1-2).

Ontology suggestions (GO/CL/UBERON)

  • UBERON (anatomy): intrahepatic bile duct / liver intrahepatic biliary tree (not explicitly provided in the retrieved corpus; recommended as the primary affected site based on iCCA focus).
  • GO Cellular Component (suggested): mitochondrion / cytosol (IDH isoform localization is relevant: IDH1 cytosolic; IDH2 mitochondrial) (vaquero2024decipheringtheroleb pages 29-32).

7. Anatomical Structures Affected

  • Primary site for this molecular subtype in clinical datasets and trials is overwhelmingly intrahepatic cholangiocarcinoma (e.g., ClarIDHy population was 90–95% intrahepatic) (casak2022fdaapprovalsummary pages 1-2).

8. Temporal Development

  • iCCA is frequently diagnosed at an advanced stage due to asymptomatic early course (nishida2024geneticepigeneticalterationand pages 1-2).
  • In PSC high-risk populations, a large fraction of PSC‑CCA is diagnosed early after PSC diagnosis: ≈30–50% within the first year (catanzaro2023primarysclerosingcholangitisassociated pages 1-2, catanzaro2023primarysclerosingcholangitisassociated pages 2-4).

9. Inheritance and Population

Epidemiology (general CCA/iCCA; not IDH-specific incidence)

  • Age-standardized incidence cited in one 2023 therapeutic review: 0.3–3.5 per 100,000 in EU/USA/Australasia (Oct 2023) (frampton2023ivosidenibareview pages 1-2).
  • Another report (case-based) states incidence “approximately 6 per 100,000” and rising (Jul 2024) (muller2024sustainedclinicalresponse pages 1-2).

Proportion of iCCA with IDH mutations

  • iCCA tumor frequency of IDH1/2 alterations is consistently in the ~14–20% range for IDH1 and lower for IDH2, with R132C dominant (makawita2024comprehensiveimmunogenomicprofiling pages 1-2, frampton2023ivosidenibareview pages 1-2, vaquero2024decipheringtheroleb pages 29-32).

10. Diagnostics

Molecular confirmation of IDH mutation (standard clinical implementation)

Tissue NGS remains central; ClarIDHy eligibility required an IDH1 mutation “as detected by an FDA‑approved test” (FDA summary abstract, Mar 2022) (casak2022fdaapprovalsummary pages 1-2). Baseline distributions of specific IDH1 variants were reported (casak2022fdaapprovalsummary pages 1-2).

Liquid biopsy (ctDNA) integration (2024 evidence)

  • In a 2024 matched tissue/ctDNA cohort (128 total BTC; 32 matched pairs), “All IDH1 mutations detected in tumor DNA were also identified in liquid biopsies” (Jan 2024) (astier2024molecularprofilingof pages 1-2).
  • A 2024 review reports tissue–blood concordance can be high but variable and timing-dependent; it notes IDH1 concordance reached 100% when ctDNA collected before systemic therapy and dropped to 56% when collected on therapy/stable disease, and cites overall concordance values including 74% overall with 92% in iCCA in one report (Oct 2024) (awosika2024integrationofcirculating pages 5-6).

Diagnostic workup in high-risk PSC (surveillance/diagnostic performance)

Although PSC‑CCA is a distinct etiologic setting (not specific to IDH-mutant iCCA), it provides real-world diagnostic strategies for biliary malignancy: - Combining brush cytology + biopsy + FISH increased sensitivity from 42% to 82% while keeping specificity ~100% in one cited analysis (Oct 2023) (catanzaro2023primarysclerosingcholangitisassociated pages 8-9). - CA19‑9 thresholds show variable performance; one summary reports 129 U/mL achieving specificity 98.5% and sensitivity 78.6% in one study but far lower sensitivity in another; lower cutoffs improve sensitivity but reduce specificity/PPV (Oct 2023) (catanzaro2023primarysclerosingcholangitisassociated pages 7-8). - An institutional PSC surveillance protocol described MRI/MRCP with DWI every 6 months (Oct 2023) (catanzaro2023primarysclerosingcholangitisassociated pages 9-11).

11. Outcome / Prognosis

General prognosis (advanced disease)

  • One review reports “around 70%” diagnosed with advanced disease (Oct 2023) (frampton2023ivosidenibareview pages 1-2).
  • A case-based review states only “about 30%” are eligible for resection at diagnosis, recurrence risk “up to 40%,” median OS for unresectable/metastatic disease “<12 months,” and 5‑year survival “<20%” (Jul 2024) (muller2024sustainedclinicalresponse pages 1-2).

IDH-mutant prognosis and immune phenotype

  • IDH1 mutations (and FGFR2 fusions) are described as being associated with a relatively good prognosis compared with KRAS/BRAF-driven tumors in a 2024 immune‑genomic review (Oct 2024) (nishida2024geneticepigeneticalterationand pages 1-2).
  • In the large 2024 CGP/immunogenomic cohort, no significant difference in retrospective mOS was observed between IDH1/2+ and IDH‑wildtype patients (Mar 2024) (makawita2024comprehensiveimmunogenomicprofiling pages 1-2).

12. Treatment

Approved targeted therapy: mutant IDH1 inhibition (ivosidenib)

Regulatory indication & pivotal trial - Direct abstract quote (FDA approval summary):On August 25, 2021, the FDA approved ivosidenib for the treatment of adult patients with unresectable locally advanced or metastatic… IDH1 mutated cholangiocarcinoma… with disease progression after 1 to 2 prior lines of systemic therapy” (Mar 2022) (casak2022fdaapprovalsummary pages 1-2). - FDA approval summary reports PFS HR 0.37 (P<0.0001) and median OS 10.3 vs 7.5 months with crossover confounding (casak2022fdaapprovalsummary pages 1-2, casak2022fdaapprovalsummary media 6fe1eb4a, casak2022fdaapprovalsummary media 2f70fd07).

Safety - FDA summary abstract lists common adverse reactions (>20%): “fatigue/asthenia, nausea, diarrhea, abdominal pain, ascites, vomiting, cough, and decreased appetite” (Mar 2022) (casak2022fdaapprovalsummary pages 1-2, casak2022fdaapprovalsummary media 085761fb).

Pharmacodynamics / biomarker effect - Plasma 2‑HG suppression to near healthy levels is shown in the ClarIDHy PK/PD analysis (Jan 2024) (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2).

Real‑world implementation - Italian real‑world cohort (n=11) reported median PFS 4.4 months and OS 15 months with no grade ≥3 treatment-related AEs (Jan 2023) (muller2024sustainedclinicalresponse pages 1-2).

Study / evidence source Therapy / regimen Setting / line Key endpoints and numeric results Notable safety signals Biomarker / PD findings Publication year/date or NCT URL
ClarIDHy phase III, FDA approval summary + immunogenomic background Ivosidenib 500 mg orally once daily vs placebo Previously treated, advanced unresectable/metastatic IDH1-mutant cholangiocarcinoma; progression after 1–2 prior systemic regimens; randomized 2:1; crossover allowed PFS HR 0.37 (95% CI 0.25–0.54; P<0.0001); median OS 10.3 mo vs 7.5 mo, HR 0.79 (95% CI 0.56–1.12); Makawita background also cites median PFS 2.7 vs 1.4 mo and mOS 10.3 vs 7.5 mo (casak2022fdaapprovalsummary pages 1-2, makawita2024comprehensiveimmunogenomicprofiling pages 1-2) AEs >20% with ivosidenib: fatigue/asthenia, nausea, diarrhea, abdominal pain, ascites, vomiting, cough, decreased appetite; placebo >20%: fatigue/asthenia, nausea, abdominal pain, vomiting (casak2022fdaapprovalsummary pages 1-2) Established mutant-IDH1 targeting in CCA; background notes IDH1/2-altered tumors are relatively immune-cold with lower PD-L1, TMB, MSI-H than IDH-wt iCCA (makawita2024comprehensiveimmunogenomicprofiling pages 1-2, casak2022fdaapprovalsummary pages 1-2) 2022 FDA summary; trial NCT02989857 (completed) https://doi.org/10.1158/1078-0432.CCR-21-4462
Phase I ivosidenib clinical study summarized by Lavacchi Ivosidenib 500 mg once daily Pretreated IDH1-mutant cholangiocarcinoma; 73 patients, 89% intrahepatic ORR 5%, DCR 61%, median PFS 3.8 mo (95% CI 3.6–7.3), 6-mo PFS 40.1%, 12-mo PFS 21.8%, median OS 13.8 mo (95% CI 11.1–29.3) (lavacchi2022ivosidenibinidh1mutated pages 2-3) Grade ≥3 ascites 5%, anemia 4%; QT prolongation 11% overall, grade 3 in 1 patient (lavacchi2022ivosidenibinidh1mutated pages 2-3) Background biology: mutant IDH1 causes 2-HG accumulation; common baseline variants R132C 77%, R132L 11%; resistance alterations included IDH2-R172V and IDH1-R132F at progression (lavacchi2022ivosidenibinidh1mutated pages 2-3) 2022 https://doi.org/10.2139/ssrn.3977450
Italian real-world experience (Rimini et al.) Ivosidenib monotherapy Clinical practice; second-/third-line advanced IDH1-mutant cholangiocarcinoma; 11 patients Median PFS 4.4 mo (95% CI 2.0–5.8), median OS 15.0 mo (95% CI 6.6–15.0), DCR 63%, PR 18% (2/11) (muller2024sustainedclinicalresponse pages 1-2) 18% had at least one treatment-related AE; no grade ≥3 events; most frequent grade 2 AEs: prolonged QT interval, hypomagnesemia (muller2024sustainedclinicalresponse pages 1-2) Molecular profiling in 8/11 showed common co-alterations in TP53, BAP1, CDKN2A, CDKN2B; R132C was the most prevalent IDH1 variant in related real-world reporting (muller2024sustainedclinicalresponse pages 1-2) 2023 https://doi.org/10.1177/17588359231171574
ClarIDHy PK/PD biomarker analysis (Fan et al.) Ivosidenib 500 mg once daily PK/PD subset from phase III ClarIDHy; advanced IDH1-mutant cholangiocarcinoma Clinical outcomes referenced from ClarIDHy; PK/PD paper itself emphasizes drug exposure and 2-HG suppression rather than new efficacy endpoints (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2) No new major safety signal highlighted in excerpt; focus was PK/PD characterization (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2) Rapid absorption (Tmax ~2.63 h single dose, 2.07 h multiple dose); mean plasma 2-HG fell from 1108 ng/mL at baseline to 97.7 ng/mL at C2D1; average 2-HG inhibition 75.0% at steady state; no 2-HG decrease with placebo (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2) 2024 https://doi.org/10.1007/s00280-023-04633-5
ClinicalTrials.gov: ClarIDHy Ivosidenib vs placebo Previously treated advanced cholangiocarcinoma with IDH1 mutation Registrational phase III trial; enrollment 187; completed (casak2022fdaapprovalsummary pages 1-2) See FDA summary row for safety outcomes (casak2022fdaapprovalsummary pages 1-2) Trial enabled approval; placebo-to-ivosidenib crossover permitted (casak2022fdaapprovalsummary pages 1-2) NCT02989857 https://clinicaltrials.gov/study/NCT02989857
ClinicalTrials.gov: first-line combination study Ivosidenib + durvalumab + gemcitabine/cisplatin First-line locally advanced or metastatic cholangiocarcinoma with IDH1 mutation Phase I/II; recruiting; planned enrollment 52; no efficacy results yet available in provided context Not yet reported in provided context Rationale: combine IDH1 inhibition with chemoimmunotherapy in molecularly selected disease NCT06501625 https://clinicaltrials.gov/study/NCT06501625
ClinicalTrials.gov: observational real-world study Ivosidenib in routine practice Locally advanced or metastatic cholangiocarcinoma with IDH1 R132 mutation after at least one prior systemic treatment Observational; recruiting; planned enrollment 100; intended to capture real-world effectiveness and treatment patterns Real-world safety collection expected; no results yet in provided context Reflects implementation of approved ivosidenib outside randomized trial setting NCT06607302 https://clinicaltrials.gov/study/NCT06607302
ClinicalTrials.gov: adjuvant / maintenance study Ivosidenib maintenance after standard adjuvant chemotherapy Curative-intent mIDH1 cholangiocarcinoma after SOC adjuvant chemotherapy Phase II; recruiting; planned enrollment 40; no outcome data yet in provided context Not yet reported in provided context Explores earlier-disease use after curative-intent therapy NCT07260175 https://clinicaltrials.gov/study/NCT07260175
ClinicalTrials.gov: IDH-mutant basket PARP study Olaparib Advanced glioma, cholangiocarcinoma, or solid tumors with IDH1/2 mutations Phase II basket trial; active, not recruiting; planned enrollment 89; cholangiocarcinoma included but no CCA-specific efficacy data in provided context Not reported in provided context Based on therapeutic exploitation of IDH-associated vulnerabilities; cholangiocarcinoma cohort included NCT03212274 https://clinicaltrials.gov/study/NCT03212274

Table: This table summarizes pivotal trial data, pharmacodynamic findings, real-world implementation, and active clinical studies for IDH1-mutant cholangiocarcinoma therapies. It is useful for comparing efficacy, safety, biomarker effects, and where the treatment landscape is moving next.

MAXO (Medical Action Ontology) suggestions - Small molecule therapy (ivosidenib) targeting mutant IDH1 (casak2022fdaapprovalsummary pages 1-2) - Tumor molecular profiling / genomic testing to select therapy (casak2022fdaapprovalsummary pages 1-2, astier2024molecularprofilingof pages 1-2)

Emerging / experimental treatment directions (2023–2024)

  • Combination strategies leveraging immune reprogramming: IDH inhibitors may restore antigen-presentation machinery and potentially improve ICI response (Oct 2024) (nishida2024geneticepigeneticalterationand pages 1-2).
  • SRC pathway targeting in IDH-mutant iCCA: preclinical evidence supports dasatinib sensitivity and combination with S6K/AKT inhibitor M2698 (May 2024) (luk2024srcinhibitionenables pages 1-2).
  • Active clinical trials (examples):
  • First-line combination: ivosidenib + durvalumab + gemcitabine/cisplatin (NCT06501625) (frampton2023ivosidenibareview pages 1-2)
  • Observational real-world: ivosidenib after ≥1 prior line (NCT06607302) (frampton2023ivosidenibareview pages 1-2)
  • Maintenance/adjuvant strategy: ivosidenib maintenance after SOC adjuvant chemotherapy (NCT07260175) (frampton2023ivosidenibareview pages 1-2)
  • Basket vulnerability exploitation: olaparib in IDH1/2‑mutant tumors including cholangiocarcinoma (NCT03212274) (frampton2023ivosidenibareview pages 1-2)

13. Prevention

Subtype-specific prevention for IDH-mutant iCCA is not established in the retrieved evidence.

High-risk prevention/surveillance paradigms exist for etiologic risk conditions: - PSC surveillance: imaging + biomarkers in structured follow-up; one review emphasizes surveillance is “mandatory” and provides MRI/MRCP-based protocols (catanzaro2023primarysclerosingcholangitisassociated pages 9-11). - Fluke-related CCA prevention: infection control (anti-helminthics, education, hygiene) is repeatedly noted as a preventive principle (qualitative) (ciobica2024theconstellationof pages 2-3).

14. Other Species / Natural Disease

No cross-species naturally occurring disease data were identified in the retrieved corpus.

15. Model organisms and experimental systems

Preclinical models used for IDH-mutant iCCA

  • Patient-derived organoids and patient-derived xenografts (PDX): used in mechanistic dependency work (SRC/MAGI1‑PP2A/S6K) (luk2024srcinhibitionenables pages 1-2).
  • Genetically engineered mouse model (GEMM) explicitly including Idh1 mutation: Alb‑Cre; KrasLSL‑G12D; Idh1LSL‑R132 reported with 100% penetrance and latency 27–54 weeks, producing multifocal iCCA with metastasis (reviewed in 2024) (vaquero2024decipheringtherole pages 25-29).

Key recent developments (prioritizing 2023–2024)

1) Large-scale immunogenomics of IDH1/2‑altered iCCA (Mar 2024): clear evidence that IDH-altered iCCA is relatively immune-cold and has lower MSI‑H/TMB‑high/PD‑L1 positivity than IDH‑wildtype iCCA (makawita2024comprehensiveimmunogenomicprofiling pages 1-2). 2) Mechanistic dependency in IDH-mutant iCCA (May 2024): SRC-driven translational signaling vulnerability actionable with dasatinib±M2698 in organoids/PDX (luk2024srcinhibitionenables pages 1-2). 3) Biomarker-confirmed on-target activity of ivosidenib (Jan 2024): robust plasma 2‑HG suppression in ClarIDHy PK/PD study (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2). 4) ctDNA evidence supporting IDH1 detection (Jan 2024; Oct 2024): high detection and timing-dependent concordance with tissue; IDH1 appears comparatively reliable in ctDNA relative to certain fusions (astier2024molecularprofilingof pages 1-2, awosika2024integrationofcirculating pages 5-6).

Evidence-backed statistics (selected)

  • iCCA proportion of CCA: 10–20% (frampton2023ivosidenibareview pages 1-2).
  • Advanced presentation: ~70% diagnosed at advanced stage (frampton2023ivosidenibareview pages 1-2).
  • IDH1 frequency in iCCA: ~14% in a 3,067-case CGP cohort (makawita2024comprehensiveimmunogenomicprofiling pages 1-2).
  • IDH2 frequency in iCCA: ~4% in the same cohort (makawita2024comprehensiveimmunogenomicprofiling pages 1-2).
  • Dominant variant: IDH1 R132C (69% in CGP cohort; 68–74% in ClarIDHy baseline) (makawita2024comprehensiveimmunogenomicprofiling pages 1-2, casak2022fdaapprovalsummary pages 1-2).
  • ClarIDHy FDA summary: PFS HR 0.37; median OS 10.3 vs 7.5 months (casak2022fdaapprovalsummary pages 1-2, casak2022fdaapprovalsummary media 6fe1eb4a, casak2022fdaapprovalsummary media 2f70fd07).
  • PD effect: mean plasma 2‑HG reduced 1108 → 97.7 ng/mL; 75% inhibition at steady state (fan2024pharmacokineticspharmacodynamicsofivosidenib pages 1-2).

Notes on limitations of this report

  • Several requested identifier types (ICD‑10/ICD‑11, MeSH, Orphanet, OMIM) and detailed phenotype frequencies were not available in the retrieved tool corpus and were therefore not asserted.
  • Where PSC-CCA surveillance or fluke-related prevention is discussed, it reflects general CCA prevention/surveillance rather than evidence specific to the IDH-mutant molecular subtype.

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